Multiple sequence alignment - TraesCS2D01G266600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G266600 chr2D 100.000 6925 0 0 1 6925 325366083 325359159 0.000000e+00 12789.0
1 TraesCS2D01G266600 chr2D 92.171 562 36 3 6366 6925 325346904 325346349 0.000000e+00 787.0
2 TraesCS2D01G266600 chr2D 89.027 565 56 5 6364 6925 489598773 489598212 0.000000e+00 695.0
3 TraesCS2D01G266600 chr2D 87.835 559 65 3 6368 6925 293281385 293280829 0.000000e+00 652.0
4 TraesCS2D01G266600 chr2D 87.676 568 58 11 6364 6925 448225636 448226197 0.000000e+00 651.0
5 TraesCS2D01G266600 chr2A 93.583 3226 99 52 3015 6176 392726081 392729262 0.000000e+00 4711.0
6 TraesCS2D01G266600 chr2A 89.860 2495 103 56 488 2909 392723666 392726083 0.000000e+00 3068.0
7 TraesCS2D01G266600 chr2A 95.890 219 6 2 1 217 392723185 392723402 1.110000e-92 351.0
8 TraesCS2D01G266600 chr2A 88.276 145 10 5 325 467 392723475 392723614 4.300000e-37 167.0
9 TraesCS2D01G266600 chr2B 96.103 2412 68 10 3838 6243 394361954 394359563 0.000000e+00 3910.0
10 TraesCS2D01G266600 chr2B 93.410 1912 55 18 611 2505 394365006 394363149 0.000000e+00 2767.0
11 TraesCS2D01G266600 chr2B 90.282 710 15 18 3015 3712 394362737 394362070 0.000000e+00 880.0
12 TraesCS2D01G266600 chr2B 92.025 326 14 6 36 351 394366165 394365842 1.370000e-121 448.0
13 TraesCS2D01G266600 chr2B 86.131 411 8 16 2512 2913 394363107 394362737 1.400000e-106 398.0
14 TraesCS2D01G266600 chr2B 94.286 105 6 0 352 456 394365582 394365478 2.000000e-35 161.0
15 TraesCS2D01G266600 chr4D 88.339 566 60 6 6363 6925 49195211 49195773 0.000000e+00 675.0
16 TraesCS2D01G266600 chr4D 87.500 568 61 9 6363 6925 14964097 14963535 0.000000e+00 647.0
17 TraesCS2D01G266600 chr5D 88.298 564 63 3 6364 6925 363163929 363163367 0.000000e+00 673.0
18 TraesCS2D01G266600 chr5D 90.090 111 11 0 2912 3022 94343223 94343113 2.010000e-30 145.0
19 TraesCS2D01G266600 chr3D 87.895 570 59 8 6359 6925 467291649 467292211 0.000000e+00 662.0
20 TraesCS2D01G266600 chr3D 82.273 220 37 2 1378 1596 574917125 574917343 9.170000e-44 189.0
21 TraesCS2D01G266600 chr3D 88.235 119 13 1 2909 3026 130549933 130549815 2.600000e-29 141.0
22 TraesCS2D01G266600 chr1D 87.809 566 63 6 6363 6925 386998694 386998132 0.000000e+00 658.0
23 TraesCS2D01G266600 chr1D 88.235 119 13 1 2909 3026 129479262 129479380 2.600000e-29 141.0
24 TraesCS2D01G266600 chr1D 96.875 32 1 0 6332 6363 204987179 204987148 3.000000e-03 54.7
25 TraesCS2D01G266600 chr6B 78.418 607 123 8 4561 5163 574463893 574464495 8.420000e-104 388.0
26 TraesCS2D01G266600 chr6B 81.735 219 38 2 1378 1595 60864349 60864132 1.530000e-41 182.0
27 TraesCS2D01G266600 chr6B 77.288 295 65 2 3883 4176 61224420 61224713 9.230000e-39 172.0
28 TraesCS2D01G266600 chr6B 80.569 211 41 0 1386 1596 574460723 574460933 5.560000e-36 163.0
29 TraesCS2D01G266600 chr6B 80.090 221 40 4 1378 1596 61223605 61223823 2.000000e-35 161.0
30 TraesCS2D01G266600 chr6B 90.265 113 10 1 2912 3024 582397153 582397042 5.600000e-31 147.0
31 TraesCS2D01G266600 chr6B 88.034 117 14 0 2912 3028 319535030 319534914 9.370000e-29 139.0
32 TraesCS2D01G266600 chr6A 78.254 607 124 8 4561 5163 526119130 526119732 3.920000e-102 383.0
33 TraesCS2D01G266600 chr6A 79.377 257 53 0 3883 4139 33541690 33541434 1.530000e-41 182.0
34 TraesCS2D01G266600 chr6A 77.627 295 64 2 3883 4176 33584217 33584510 1.980000e-40 178.0
35 TraesCS2D01G266600 chr6A 81.517 211 39 0 1386 1596 526115974 526116184 2.570000e-39 174.0
36 TraesCS2D01G266600 chr6A 100.000 32 0 0 6332 6363 610343521 610343490 7.500000e-05 60.2
37 TraesCS2D01G266600 chr6D 78.089 607 125 8 4561 5163 384221992 384222594 1.820000e-100 377.0
38 TraesCS2D01G266600 chr6D 79.087 263 55 0 3877 4139 28999646 28999908 1.530000e-41 182.0
39 TraesCS2D01G266600 chr6D 80.995 221 38 4 1378 1596 28942775 28942557 9.230000e-39 172.0
40 TraesCS2D01G266600 chr6D 78.947 247 50 2 3883 4128 28941829 28941584 4.300000e-37 167.0
41 TraesCS2D01G266600 chr6D 80.569 211 41 0 1386 1596 384218667 384218877 5.560000e-36 163.0
42 TraesCS2D01G266600 chr6D 88.235 119 13 1 2909 3026 276068417 276068299 2.600000e-29 141.0
43 TraesCS2D01G266600 chr6D 100.000 29 0 0 1223 1251 339969905 339969933 3.000000e-03 54.7
44 TraesCS2D01G266600 chr1A 91.589 107 9 0 2912 3018 13420653 13420759 1.560000e-31 148.0
45 TraesCS2D01G266600 chr4A 90.179 112 11 0 2910 3021 729138369 729138480 5.600000e-31 147.0
46 TraesCS2D01G266600 chr7D 88.696 115 12 1 2904 3018 568184368 568184255 9.370000e-29 139.0
47 TraesCS2D01G266600 chr7D 100.000 32 0 0 6332 6363 82857960 82857991 7.500000e-05 60.2
48 TraesCS2D01G266600 chr7D 100.000 32 0 0 6332 6363 106309871 106309840 7.500000e-05 60.2
49 TraesCS2D01G266600 chr7D 100.000 32 0 0 6332 6363 486174884 486174915 7.500000e-05 60.2
50 TraesCS2D01G266600 chr7D 100.000 28 0 0 6332 6359 101245963 101245990 1.300000e-02 52.8
51 TraesCS2D01G266600 chr5B 96.774 31 1 0 6332 6362 427842101 427842071 1.300000e-02 52.8
52 TraesCS2D01G266600 chr3B 96.774 31 1 0 6332 6362 27955736 27955706 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G266600 chr2D 325359159 325366083 6924 True 12789.000000 12789 100.00000 1 6925 1 chr2D.!!$R3 6924
1 TraesCS2D01G266600 chr2D 325346349 325346904 555 True 787.000000 787 92.17100 6366 6925 1 chr2D.!!$R2 559
2 TraesCS2D01G266600 chr2D 489598212 489598773 561 True 695.000000 695 89.02700 6364 6925 1 chr2D.!!$R4 561
3 TraesCS2D01G266600 chr2D 293280829 293281385 556 True 652.000000 652 87.83500 6368 6925 1 chr2D.!!$R1 557
4 TraesCS2D01G266600 chr2D 448225636 448226197 561 False 651.000000 651 87.67600 6364 6925 1 chr2D.!!$F1 561
5 TraesCS2D01G266600 chr2A 392723185 392729262 6077 False 2074.250000 4711 91.90225 1 6176 4 chr2A.!!$F1 6175
6 TraesCS2D01G266600 chr2B 394359563 394366165 6602 True 1427.333333 3910 92.03950 36 6243 6 chr2B.!!$R1 6207
7 TraesCS2D01G266600 chr4D 49195211 49195773 562 False 675.000000 675 88.33900 6363 6925 1 chr4D.!!$F1 562
8 TraesCS2D01G266600 chr4D 14963535 14964097 562 True 647.000000 647 87.50000 6363 6925 1 chr4D.!!$R1 562
9 TraesCS2D01G266600 chr5D 363163367 363163929 562 True 673.000000 673 88.29800 6364 6925 1 chr5D.!!$R2 561
10 TraesCS2D01G266600 chr3D 467291649 467292211 562 False 662.000000 662 87.89500 6359 6925 1 chr3D.!!$F1 566
11 TraesCS2D01G266600 chr1D 386998132 386998694 562 True 658.000000 658 87.80900 6363 6925 1 chr1D.!!$R2 562
12 TraesCS2D01G266600 chr6B 574460723 574464495 3772 False 275.500000 388 79.49350 1386 5163 2 chr6B.!!$F2 3777
13 TraesCS2D01G266600 chr6A 526115974 526119732 3758 False 278.500000 383 79.88550 1386 5163 2 chr6A.!!$F2 3777
14 TraesCS2D01G266600 chr6D 384218667 384222594 3927 False 270.000000 377 79.32900 1386 5163 2 chr6D.!!$F3 3777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 1368 0.611062 GGTTAGTTCCCTTGTGGCCC 60.611 60.0 0.00 0.00 0.00 5.80 F
1816 2454 0.109827 TTGATCGTTTGGTGCATGCG 60.110 50.0 14.09 0.00 0.00 4.73 F
2629 3448 0.177373 TCGACGACCAGCTAGCTAGA 59.823 55.0 25.15 5.69 0.00 2.43 F
3061 4167 0.532573 CCTCACTGCTATCCACACGT 59.467 55.0 0.00 0.00 0.00 4.49 F
4061 5228 0.335019 GGGCCTTCAACCCCAAGTAT 59.665 55.0 0.84 0.00 42.01 2.12 F
5824 8348 0.888736 TAACGGACCGGTCTCGACAA 60.889 55.0 36.08 23.36 39.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2785 0.596600 CGAACGTACCGCCTGCATAT 60.597 55.000 0.00 0.00 0.00 1.78 R
3143 4249 0.037882 CAGGTGTGTGCATCTCGAGT 60.038 55.000 13.13 0.00 32.89 4.18 R
3499 4622 0.038892 TAGAGGTTTCACACGCCGTC 60.039 55.000 0.00 0.00 0.00 4.79 R
4283 6423 0.901580 TCGGGGTGGACCTGTAGAAC 60.902 60.000 0.00 0.00 46.44 3.01 R
5826 8350 1.007238 AGGACTGCAGGCTAGGTAGAA 59.993 52.381 21.42 0.00 0.00 2.10 R
6781 9335 3.973973 AGATTCCACTCGGATATCCCAAA 59.026 43.478 16.36 1.26 42.41 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.500205 CGGTGTGTCCACTCTTAACTAACA 60.500 45.833 0.00 0.00 41.53 2.41
185 186 7.443302 AAATCTCCATCAGAAATCTAGGACA 57.557 36.000 0.00 0.00 33.62 4.02
219 237 8.153550 AGATTAAGTGTTGAGTTGTTCAGAGAT 58.846 33.333 0.00 0.00 37.07 2.75
220 238 8.682936 ATTAAGTGTTGAGTTGTTCAGAGATT 57.317 30.769 0.00 0.00 37.07 2.40
223 241 7.721286 AGTGTTGAGTTGTTCAGAGATTAAG 57.279 36.000 0.00 0.00 37.07 1.85
267 290 4.334552 ACATGCATGTCAGTGTTAATCCA 58.665 39.130 26.61 0.00 35.87 3.41
296 319 7.716799 ATTTGTCAAGGAAACTATAATGGCA 57.283 32.000 0.00 0.00 42.68 4.92
354 636 3.243737 TGGCGCTTCCTGTGTACTATATG 60.244 47.826 7.64 0.00 35.26 1.78
366 648 5.049612 TGTGTACTATATGCTCGTAGCTGAC 60.050 44.000 0.00 0.00 42.97 3.51
389 671 6.039616 ACGAAGAAGAGATTGAAGAGCATAC 58.960 40.000 0.00 0.00 0.00 2.39
450 732 2.849294 AAAGGCCAGACAGAAGAGAC 57.151 50.000 5.01 0.00 0.00 3.36
460 742 1.068741 ACAGAAGAGACACAACCCGAC 59.931 52.381 0.00 0.00 0.00 4.79
462 744 1.341531 AGAAGAGACACAACCCGACTG 59.658 52.381 0.00 0.00 0.00 3.51
463 745 1.340248 GAAGAGACACAACCCGACTGA 59.660 52.381 0.00 0.00 0.00 3.41
465 747 1.971357 AGAGACACAACCCGACTGAAT 59.029 47.619 0.00 0.00 0.00 2.57
466 748 2.028930 AGAGACACAACCCGACTGAATC 60.029 50.000 0.00 0.00 0.00 2.52
468 750 2.104111 AGACACAACCCGACTGAATCAA 59.896 45.455 0.00 0.00 0.00 2.57
469 751 2.218603 ACACAACCCGACTGAATCAAC 58.781 47.619 0.00 0.00 0.00 3.18
470 752 1.194547 CACAACCCGACTGAATCAACG 59.805 52.381 3.28 3.28 0.00 4.10
471 753 1.202604 ACAACCCGACTGAATCAACGT 60.203 47.619 8.21 0.00 0.00 3.99
472 754 2.036217 ACAACCCGACTGAATCAACGTA 59.964 45.455 0.00 0.00 0.00 3.57
474 756 1.265568 CCCGACTGAATCAACGTACG 58.734 55.000 15.01 15.01 0.00 3.67
475 757 1.401931 CCCGACTGAATCAACGTACGT 60.402 52.381 16.72 16.72 0.00 3.57
556 1004 4.299586 TGAGTGGATCCAAGCAACATAA 57.700 40.909 18.20 0.00 0.00 1.90
747 1347 6.073385 AGCTACAGCAATGAATTATGATCACG 60.073 38.462 0.00 0.00 45.16 4.35
768 1368 0.611062 GGTTAGTTCCCTTGTGGCCC 60.611 60.000 0.00 0.00 0.00 5.80
769 1369 0.958876 GTTAGTTCCCTTGTGGCCCG 60.959 60.000 0.00 0.00 0.00 6.13
770 1370 1.128809 TTAGTTCCCTTGTGGCCCGA 61.129 55.000 0.00 0.00 0.00 5.14
771 1371 0.912487 TAGTTCCCTTGTGGCCCGAT 60.912 55.000 0.00 0.00 0.00 4.18
931 1541 1.135112 CAGCAGCACGTATGTACTCCA 60.135 52.381 0.00 0.00 0.00 3.86
1063 1690 5.733373 GCTCATTATAAAAGGGAAGGTTGCG 60.733 44.000 0.00 0.00 0.00 4.85
1239 1870 1.197264 CTGAGCAGCAACAGAAGAAGC 59.803 52.381 12.46 0.00 36.38 3.86
1240 1871 1.233019 GAGCAGCAACAGAAGAAGCA 58.767 50.000 0.00 0.00 0.00 3.91
1241 1872 1.197264 GAGCAGCAACAGAAGAAGCAG 59.803 52.381 0.00 0.00 0.00 4.24
1242 1873 0.386985 GCAGCAACAGAAGAAGCAGC 60.387 55.000 0.00 0.00 32.58 5.25
1243 1874 0.949397 CAGCAACAGAAGAAGCAGCA 59.051 50.000 0.00 0.00 0.00 4.41
1244 1875 1.069159 CAGCAACAGAAGAAGCAGCAG 60.069 52.381 0.00 0.00 0.00 4.24
1245 1876 0.386985 GCAACAGAAGAAGCAGCAGC 60.387 55.000 0.00 0.00 42.56 5.25
1246 1877 0.949397 CAACAGAAGAAGCAGCAGCA 59.051 50.000 3.17 0.00 45.49 4.41
1247 1878 1.069159 CAACAGAAGAAGCAGCAGCAG 60.069 52.381 3.17 0.00 45.49 4.24
1248 1879 1.235948 ACAGAAGAAGCAGCAGCAGC 61.236 55.000 3.17 0.46 45.49 5.25
1249 1880 1.072678 AGAAGAAGCAGCAGCAGCA 59.927 52.632 12.92 0.00 45.49 4.41
1250 1881 0.956410 AGAAGAAGCAGCAGCAGCAG 60.956 55.000 12.92 0.00 45.49 4.24
1262 1893 2.821366 CAGCAGGGTGGCGATGAC 60.821 66.667 0.00 0.00 39.27 3.06
1376 2007 4.758251 CACCACGGCCATGAGCGA 62.758 66.667 0.00 0.00 45.17 4.93
1614 2245 4.932268 GGTACGCACACAAATTAGCTTA 57.068 40.909 0.00 0.00 0.00 3.09
1615 2246 4.893795 GGTACGCACACAAATTAGCTTAG 58.106 43.478 0.00 0.00 0.00 2.18
1624 2255 5.128919 CACAAATTAGCTTAGCTCCTCCAT 58.871 41.667 11.09 0.00 40.44 3.41
1629 2260 3.044873 AGCTTAGCTCCTCCATCTTCT 57.955 47.619 0.00 0.00 30.62 2.85
1816 2454 0.109827 TTGATCGTTTGGTGCATGCG 60.110 50.000 14.09 0.00 0.00 4.73
2117 2785 9.979578 AAATTAAAGAAGTTGTTGCATGACATA 57.020 25.926 0.00 0.00 0.00 2.29
2453 3224 2.665000 CTCAAGGAGAAGGCGCCA 59.335 61.111 31.54 2.57 36.29 5.69
2500 3274 8.244113 CCGTGCATATATATCTTTCAGTCTACA 58.756 37.037 0.00 0.00 0.00 2.74
2550 3359 6.876155 AGCTAGAGGCATCAATATCATACTG 58.124 40.000 0.00 0.00 44.79 2.74
2627 3446 2.391469 GTCGACGACCAGCTAGCTA 58.609 57.895 18.86 0.00 0.00 3.32
2629 3448 0.177373 TCGACGACCAGCTAGCTAGA 59.823 55.000 25.15 5.69 0.00 2.43
2630 3449 0.584396 CGACGACCAGCTAGCTAGAG 59.416 60.000 25.15 14.89 0.00 2.43
2631 3450 1.670791 GACGACCAGCTAGCTAGAGT 58.329 55.000 25.15 15.16 0.00 3.24
2632 3451 1.332375 GACGACCAGCTAGCTAGAGTG 59.668 57.143 25.15 18.68 0.00 3.51
2633 3452 1.340211 ACGACCAGCTAGCTAGAGTGT 60.340 52.381 25.15 15.84 0.00 3.55
2644 3463 4.134379 AGCTAGAGTGTAGTGTAGCGTA 57.866 45.455 9.40 0.00 42.68 4.42
2702 3527 5.471116 GGAAAAGCAAAAATCATTTGAGGCT 59.529 36.000 5.17 0.00 34.60 4.58
2703 3528 5.934935 AAAGCAAAAATCATTTGAGGCTG 57.065 34.783 0.00 0.00 33.90 4.85
2704 3529 3.332034 AGCAAAAATCATTTGAGGCTGC 58.668 40.909 0.00 0.00 33.00 5.25
2705 3530 3.068560 GCAAAAATCATTTGAGGCTGCA 58.931 40.909 0.50 0.00 0.00 4.41
2910 4016 4.937620 TCGGTCCATCGGTATGTATAGTAC 59.062 45.833 0.00 0.00 0.00 2.73
2913 4019 6.036517 CGGTCCATCGGTATGTATAGTACTAC 59.963 46.154 4.31 0.00 0.00 2.73
2915 4021 7.279758 GGTCCATCGGTATGTATAGTACTACTC 59.720 44.444 4.31 2.15 0.00 2.59
2916 4022 8.040132 GTCCATCGGTATGTATAGTACTACTCT 58.960 40.741 4.31 0.00 0.00 3.24
2917 4023 8.256605 TCCATCGGTATGTATAGTACTACTCTC 58.743 40.741 4.31 0.00 0.00 3.20
2918 4024 8.259411 CCATCGGTATGTATAGTACTACTCTCT 58.741 40.741 4.31 0.00 0.00 3.10
2919 4025 9.304731 CATCGGTATGTATAGTACTACTCTCTC 57.695 40.741 4.31 0.00 0.00 3.20
2920 4026 7.835822 TCGGTATGTATAGTACTACTCTCTCC 58.164 42.308 4.31 4.16 0.00 3.71
2921 4027 7.452813 TCGGTATGTATAGTACTACTCTCTCCA 59.547 40.741 4.31 0.00 0.00 3.86
2922 4028 8.259411 CGGTATGTATAGTACTACTCTCTCCAT 58.741 40.741 4.31 3.08 0.00 3.41
2923 4029 9.962809 GGTATGTATAGTACTACTCTCTCCATT 57.037 37.037 4.31 0.00 0.00 3.16
2925 4031 8.780846 ATGTATAGTACTACTCTCTCCATTCG 57.219 38.462 4.31 0.00 0.00 3.34
2926 4032 7.160049 TGTATAGTACTACTCTCTCCATTCGG 58.840 42.308 4.31 0.00 0.00 4.30
2927 4033 4.774660 AGTACTACTCTCTCCATTCGGA 57.225 45.455 0.00 0.00 39.79 4.55
2928 4034 5.113446 AGTACTACTCTCTCCATTCGGAA 57.887 43.478 0.00 0.00 42.21 4.30
2929 4035 5.697067 AGTACTACTCTCTCCATTCGGAAT 58.303 41.667 0.00 0.00 42.21 3.01
2930 4036 6.130569 AGTACTACTCTCTCCATTCGGAATT 58.869 40.000 0.00 0.00 42.21 2.17
2931 4037 7.288560 AGTACTACTCTCTCCATTCGGAATTA 58.711 38.462 0.00 0.00 42.21 1.40
2932 4038 6.394025 ACTACTCTCTCCATTCGGAATTAC 57.606 41.667 0.00 0.00 42.21 1.89
2933 4039 6.130569 ACTACTCTCTCCATTCGGAATTACT 58.869 40.000 0.00 0.00 42.21 2.24
2934 4040 5.523438 ACTCTCTCCATTCGGAATTACTC 57.477 43.478 0.00 0.00 42.21 2.59
2935 4041 4.036971 ACTCTCTCCATTCGGAATTACTCG 59.963 45.833 0.00 0.00 42.21 4.18
2936 4042 3.952323 TCTCTCCATTCGGAATTACTCGT 59.048 43.478 0.00 0.00 42.21 4.18
2937 4043 4.036498 TCTCTCCATTCGGAATTACTCGTC 59.964 45.833 0.00 0.00 42.21 4.20
2938 4044 3.952323 TCTCCATTCGGAATTACTCGTCT 59.048 43.478 0.00 0.00 42.21 4.18
2939 4045 5.128205 TCTCCATTCGGAATTACTCGTCTA 58.872 41.667 0.00 0.00 42.21 2.59
2940 4046 5.591472 TCTCCATTCGGAATTACTCGTCTAA 59.409 40.000 0.00 0.00 42.21 2.10
2941 4047 5.828747 TCCATTCGGAATTACTCGTCTAAG 58.171 41.667 0.00 0.00 38.83 2.18
2942 4048 5.591472 TCCATTCGGAATTACTCGTCTAAGA 59.409 40.000 0.00 0.00 38.83 2.10
2943 4049 6.095860 TCCATTCGGAATTACTCGTCTAAGAA 59.904 38.462 0.00 0.00 38.83 2.52
2944 4050 6.755141 CCATTCGGAATTACTCGTCTAAGAAA 59.245 38.462 0.00 0.00 0.00 2.52
2945 4051 7.438459 CCATTCGGAATTACTCGTCTAAGAAAT 59.562 37.037 0.00 0.00 0.00 2.17
2946 4052 7.751047 TTCGGAATTACTCGTCTAAGAAATG 57.249 36.000 0.00 0.00 0.00 2.32
2947 4053 7.092137 TCGGAATTACTCGTCTAAGAAATGA 57.908 36.000 0.00 0.00 0.00 2.57
2948 4054 7.541162 TCGGAATTACTCGTCTAAGAAATGAA 58.459 34.615 0.00 0.00 0.00 2.57
2949 4055 8.195436 TCGGAATTACTCGTCTAAGAAATGAAT 58.805 33.333 0.00 0.00 0.00 2.57
2950 4056 8.269424 CGGAATTACTCGTCTAAGAAATGAATG 58.731 37.037 0.00 0.00 0.00 2.67
2951 4057 8.064814 GGAATTACTCGTCTAAGAAATGAATGC 58.935 37.037 0.00 0.00 0.00 3.56
2952 4058 8.492673 AATTACTCGTCTAAGAAATGAATGCA 57.507 30.769 0.00 0.00 0.00 3.96
2956 4062 7.492524 ACTCGTCTAAGAAATGAATGCATCTA 58.507 34.615 0.00 0.00 32.35 1.98
2957 4063 7.651304 ACTCGTCTAAGAAATGAATGCATCTAG 59.349 37.037 0.00 0.00 32.35 2.43
2960 4066 8.433893 CGTCTAAGAAATGAATGCATCTAGATG 58.566 37.037 25.64 25.64 41.60 2.90
2997 4103 6.518493 AGATGCATTCATTTTTGTGACAAGT 58.482 32.000 0.00 0.00 31.96 3.16
2999 4105 8.143193 AGATGCATTCATTTTTGTGACAAGTAA 58.857 29.630 0.00 0.00 31.96 2.24
3000 4106 8.836268 ATGCATTCATTTTTGTGACAAGTAAT 57.164 26.923 0.00 0.32 0.00 1.89
3001 4107 8.659925 TGCATTCATTTTTGTGACAAGTAATT 57.340 26.923 0.00 0.00 0.00 1.40
3002 4108 9.107177 TGCATTCATTTTTGTGACAAGTAATTT 57.893 25.926 0.00 0.00 0.00 1.82
3003 4109 9.584839 GCATTCATTTTTGTGACAAGTAATTTC 57.415 29.630 0.00 0.00 0.00 2.17
3004 4110 9.782028 CATTCATTTTTGTGACAAGTAATTTCG 57.218 29.630 0.00 0.00 0.00 3.46
3005 4111 9.743057 ATTCATTTTTGTGACAAGTAATTTCGA 57.257 25.926 0.00 0.00 0.00 3.71
3006 4112 9.574458 TTCATTTTTGTGACAAGTAATTTCGAA 57.426 25.926 0.00 0.00 0.00 3.71
3007 4113 9.015577 TCATTTTTGTGACAAGTAATTTCGAAC 57.984 29.630 0.00 0.00 0.00 3.95
3008 4114 7.425915 TTTTTGTGACAAGTAATTTCGAACG 57.574 32.000 0.00 0.00 0.00 3.95
3009 4115 5.970140 TTGTGACAAGTAATTTCGAACGA 57.030 34.783 0.00 0.00 0.00 3.85
3010 4116 5.970140 TGTGACAAGTAATTTCGAACGAA 57.030 34.783 0.00 5.53 0.00 3.85
3011 4117 5.969741 TGTGACAAGTAATTTCGAACGAAG 58.030 37.500 9.46 0.23 35.38 3.79
3012 4118 5.050634 TGTGACAAGTAATTTCGAACGAAGG 60.051 40.000 9.46 0.00 35.38 3.46
3013 4119 5.176223 GTGACAAGTAATTTCGAACGAAGGA 59.824 40.000 9.46 0.00 35.38 3.36
3014 4120 5.754406 TGACAAGTAATTTCGAACGAAGGAA 59.246 36.000 9.46 0.00 35.38 3.36
3015 4121 6.073980 TGACAAGTAATTTCGAACGAAGGAAG 60.074 38.462 9.46 1.94 35.38 3.46
3016 4122 5.756833 ACAAGTAATTTCGAACGAAGGAAGT 59.243 36.000 9.46 0.00 35.38 3.01
3017 4123 6.925165 ACAAGTAATTTCGAACGAAGGAAGTA 59.075 34.615 9.46 0.00 35.38 2.24
3040 4146 8.877779 AGTAGTATATATAGTGGAGTTTACGCG 58.122 37.037 3.53 3.53 0.00 6.01
3060 4166 0.807667 GCCTCACTGCTATCCACACG 60.808 60.000 0.00 0.00 0.00 4.49
3061 4167 0.532573 CCTCACTGCTATCCACACGT 59.467 55.000 0.00 0.00 0.00 4.49
3062 4168 1.749063 CCTCACTGCTATCCACACGTA 59.251 52.381 0.00 0.00 0.00 3.57
3063 4169 2.479730 CCTCACTGCTATCCACACGTAC 60.480 54.545 0.00 0.00 0.00 3.67
3064 4170 1.131693 TCACTGCTATCCACACGTACG 59.868 52.381 15.01 15.01 0.00 3.67
3065 4171 1.131693 CACTGCTATCCACACGTACGA 59.868 52.381 24.41 0.00 0.00 3.43
3141 4247 1.416401 TCCACCTCTTGTGTTCAGACC 59.584 52.381 0.00 0.00 43.85 3.85
3142 4248 1.140852 CCACCTCTTGTGTTCAGACCA 59.859 52.381 0.00 0.00 43.85 4.02
3143 4249 2.421388 CCACCTCTTGTGTTCAGACCAA 60.421 50.000 0.00 0.00 43.85 3.67
3144 4250 2.614057 CACCTCTTGTGTTCAGACCAAC 59.386 50.000 0.00 0.00 40.26 3.77
3188 4294 3.855689 AATGTTCAACTACTGCATGCC 57.144 42.857 16.68 0.00 0.00 4.40
3321 4444 7.453980 TCAATAAATCTTGCATTTCAATCGC 57.546 32.000 0.00 0.00 33.57 4.58
3356 4479 3.492421 TGTGTATACGAGAACCGAACC 57.508 47.619 0.00 0.00 41.76 3.62
3357 4480 2.159531 TGTGTATACGAGAACCGAACCG 60.160 50.000 0.00 0.00 41.76 4.44
3422 4545 5.265191 AGATAGGCTGTCACTCTCTAAACA 58.735 41.667 13.98 0.00 0.00 2.83
3442 4565 3.877508 ACACAAGAGCAACAGTAAACTCC 59.122 43.478 0.00 0.00 0.00 3.85
3447 4570 6.942576 ACAAGAGCAACAGTAAACTCCATTAT 59.057 34.615 0.00 0.00 0.00 1.28
3562 4685 5.363101 TGCAACCTCAATTAATGTTTGCAA 58.637 33.333 14.88 0.00 42.17 4.08
3592 4717 1.660575 GACGCCCATCCATCGTACG 60.661 63.158 9.53 9.53 36.50 3.67
3593 4718 2.345880 GACGCCCATCCATCGTACGT 62.346 60.000 16.05 0.00 36.50 3.57
3594 4719 1.660575 CGCCCATCCATCGTACGTC 60.661 63.158 16.05 0.00 0.00 4.34
3617 4742 5.709631 TCCTAACTTGCAAATCAGCATACAA 59.290 36.000 0.00 0.00 45.19 2.41
3619 4744 4.178545 ACTTGCAAATCAGCATACAACC 57.821 40.909 0.00 0.00 45.19 3.77
3621 4746 3.853831 TGCAAATCAGCATACAACCTG 57.146 42.857 0.00 0.00 40.11 4.00
3684 4812 8.082242 AGCTTACATGTTGGAGTAAAATGTTTC 58.918 33.333 2.30 0.00 43.22 2.78
3783 4938 5.079689 TGCAATCAATCAACTCGGTAGTA 57.920 39.130 0.00 0.00 33.75 1.82
3784 4939 4.868171 TGCAATCAATCAACTCGGTAGTAC 59.132 41.667 0.00 0.00 33.75 2.73
4061 5228 0.335019 GGGCCTTCAACCCCAAGTAT 59.665 55.000 0.84 0.00 42.01 2.12
4097 5264 2.170985 CGCAACAAGAAGGACGCG 59.829 61.111 3.53 3.53 36.47 6.01
4589 7107 1.135915 GTCCTCGTCATGCTCATCACT 59.864 52.381 0.00 0.00 0.00 3.41
4808 7326 2.322161 GTGAAGCGCTACAAGTACGAA 58.678 47.619 12.05 0.00 0.00 3.85
5000 7518 2.358737 GTCAAGCACCTCCCCGTG 60.359 66.667 0.00 0.00 36.80 4.94
5342 7866 3.644399 GAGGGCAAGGTCGACGTCC 62.644 68.421 11.73 7.87 0.00 4.79
5555 8079 4.941609 GCGAAGATGAGCCTGGAA 57.058 55.556 0.00 0.00 0.00 3.53
5699 8223 3.663078 CGTCAACTACGTCTACGCA 57.337 52.632 1.74 0.00 46.72 5.24
5744 8268 1.555075 GGGGATAAGATGCTCGCCATA 59.445 52.381 0.26 0.00 42.43 2.74
5824 8348 0.888736 TAACGGACCGGTCTCGACAA 60.889 55.000 36.08 23.36 39.00 3.18
5826 8350 2.623915 CGGACCGGTCTCGACAACT 61.624 63.158 32.52 0.00 39.00 3.16
5832 8356 1.135460 CCGGTCTCGACAACTTCTACC 60.135 57.143 0.00 0.00 39.00 3.18
5833 8357 1.811359 CGGTCTCGACAACTTCTACCT 59.189 52.381 0.00 0.00 39.00 3.08
5834 8358 3.005554 CGGTCTCGACAACTTCTACCTA 58.994 50.000 0.00 0.00 39.00 3.08
5835 8359 3.063725 CGGTCTCGACAACTTCTACCTAG 59.936 52.174 0.00 0.00 39.00 3.02
5836 8360 3.181498 GGTCTCGACAACTTCTACCTAGC 60.181 52.174 0.00 0.00 0.00 3.42
5837 8361 3.015327 TCTCGACAACTTCTACCTAGCC 58.985 50.000 0.00 0.00 0.00 3.93
5838 8362 3.018149 CTCGACAACTTCTACCTAGCCT 58.982 50.000 0.00 0.00 0.00 4.58
5839 8363 2.753452 TCGACAACTTCTACCTAGCCTG 59.247 50.000 0.00 0.00 0.00 4.85
5840 8364 2.735762 CGACAACTTCTACCTAGCCTGC 60.736 54.545 0.00 0.00 0.00 4.85
5841 8365 2.233922 GACAACTTCTACCTAGCCTGCA 59.766 50.000 0.00 0.00 0.00 4.41
5842 8366 2.234908 ACAACTTCTACCTAGCCTGCAG 59.765 50.000 6.78 6.78 0.00 4.41
5843 8367 2.234908 CAACTTCTACCTAGCCTGCAGT 59.765 50.000 13.81 0.00 0.00 4.40
5996 8542 4.891260 TCATCCATCGATCAAGGAAGATG 58.109 43.478 7.01 2.40 39.92 2.90
6021 8567 6.183360 GCGTAGTATTGTATACTACTAGGGCC 60.183 46.154 23.88 0.00 44.56 5.80
6036 8582 1.061657 AGGGCCTACATAGCACCCTTA 60.062 52.381 2.82 0.00 42.50 2.69
6041 8587 5.429130 GGCCTACATAGCACCCTTATATTC 58.571 45.833 0.00 0.00 0.00 1.75
6044 8590 7.266400 GCCTACATAGCACCCTTATATTCTAC 58.734 42.308 0.00 0.00 0.00 2.59
6172 8722 2.828877 TGGTTGTCGAGTCATTTCGTT 58.171 42.857 0.00 0.00 41.22 3.85
6195 8745 7.464577 CGTTGGATACTAGTCAAACATGACATG 60.465 40.741 14.02 14.02 38.29 3.21
6197 8747 7.041721 TGGATACTAGTCAAACATGACATGAC 58.958 38.462 22.19 10.38 39.93 3.06
6198 8748 7.041721 GGATACTAGTCAAACATGACATGACA 58.958 38.462 22.19 0.00 44.55 3.58
6199 8749 7.712639 GGATACTAGTCAAACATGACATGACAT 59.287 37.037 22.19 4.76 44.55 3.06
6200 8750 9.102757 GATACTAGTCAAACATGACATGACATT 57.897 33.333 22.19 10.53 44.55 2.71
6201 8751 7.750229 ACTAGTCAAACATGACATGACATTT 57.250 32.000 22.19 9.27 44.55 2.32
6202 8752 8.846943 ACTAGTCAAACATGACATGACATTTA 57.153 30.769 22.19 6.35 44.55 1.40
6203 8753 8.939929 ACTAGTCAAACATGACATGACATTTAG 58.060 33.333 22.19 15.70 44.55 1.85
6213 8763 5.044919 TGACATGACATTTAGGGAGTTCCAT 60.045 40.000 0.00 0.00 38.24 3.41
6214 8764 5.195940 ACATGACATTTAGGGAGTTCCATG 58.804 41.667 0.00 0.00 38.24 3.66
6233 8783 7.589958 TCCATGAAGTAAAAACTAGGCAAAA 57.410 32.000 0.00 0.00 0.00 2.44
6239 8789 7.286775 TGAAGTAAAAACTAGGCAAAAGGATGT 59.713 33.333 0.00 0.00 0.00 3.06
6243 8793 3.073274 ACTAGGCAAAAGGATGTCACC 57.927 47.619 0.00 0.00 0.00 4.02
6244 8794 2.290960 ACTAGGCAAAAGGATGTCACCC 60.291 50.000 0.00 0.00 0.00 4.61
6245 8795 0.609131 AGGCAAAAGGATGTCACCCG 60.609 55.000 0.00 0.00 0.00 5.28
6246 8796 1.595093 GGCAAAAGGATGTCACCCGG 61.595 60.000 0.00 0.00 0.00 5.73
6247 8797 0.608035 GCAAAAGGATGTCACCCGGA 60.608 55.000 0.73 0.00 0.00 5.14
6248 8798 1.453155 CAAAAGGATGTCACCCGGAG 58.547 55.000 0.73 0.00 0.00 4.63
6249 8799 1.064825 AAAAGGATGTCACCCGGAGT 58.935 50.000 0.73 0.00 0.00 3.85
6250 8800 1.064825 AAAGGATGTCACCCGGAGTT 58.935 50.000 0.73 0.00 0.00 3.01
6251 8801 1.064825 AAGGATGTCACCCGGAGTTT 58.935 50.000 0.73 0.00 0.00 2.66
6252 8802 0.613777 AGGATGTCACCCGGAGTTTC 59.386 55.000 0.73 0.00 0.00 2.78
6253 8803 0.613777 GGATGTCACCCGGAGTTTCT 59.386 55.000 0.73 0.00 0.00 2.52
6254 8804 1.003233 GGATGTCACCCGGAGTTTCTT 59.997 52.381 0.73 0.00 0.00 2.52
6255 8805 2.347731 GATGTCACCCGGAGTTTCTTC 58.652 52.381 0.73 0.00 0.00 2.87
6256 8806 0.395312 TGTCACCCGGAGTTTCTTCC 59.605 55.000 0.73 0.00 0.00 3.46
6257 8807 0.395312 GTCACCCGGAGTTTCTTCCA 59.605 55.000 0.73 0.00 37.05 3.53
6258 8808 0.395312 TCACCCGGAGTTTCTTCCAC 59.605 55.000 0.73 0.00 37.05 4.02
6259 8809 0.107831 CACCCGGAGTTTCTTCCACA 59.892 55.000 0.73 0.00 37.05 4.17
6260 8810 0.841289 ACCCGGAGTTTCTTCCACAA 59.159 50.000 0.73 0.00 37.05 3.33
6261 8811 1.202770 ACCCGGAGTTTCTTCCACAAG 60.203 52.381 0.73 0.00 37.05 3.16
6262 8812 1.523758 CCGGAGTTTCTTCCACAAGG 58.476 55.000 0.00 0.00 37.05 3.61
6263 8813 0.875059 CGGAGTTTCTTCCACAAGGC 59.125 55.000 0.00 0.00 37.05 4.35
6264 8814 1.813862 CGGAGTTTCTTCCACAAGGCA 60.814 52.381 0.00 0.00 37.05 4.75
6265 8815 1.609072 GGAGTTTCTTCCACAAGGCAC 59.391 52.381 0.00 0.00 37.20 5.01
6266 8816 2.749800 GGAGTTTCTTCCACAAGGCACT 60.750 50.000 0.00 0.00 37.49 4.40
6267 8817 2.550180 GAGTTTCTTCCACAAGGCACTC 59.450 50.000 0.00 0.00 38.49 3.51
6268 8818 1.264288 GTTTCTTCCACAAGGCACTCG 59.736 52.381 0.00 0.00 38.49 4.18
6269 8819 0.756294 TTCTTCCACAAGGCACTCGA 59.244 50.000 0.00 0.00 38.49 4.04
6270 8820 0.033504 TCTTCCACAAGGCACTCGAC 59.966 55.000 0.00 0.00 38.49 4.20
6271 8821 0.249868 CTTCCACAAGGCACTCGACA 60.250 55.000 0.00 0.00 38.49 4.35
6272 8822 0.179234 TTCCACAAGGCACTCGACAA 59.821 50.000 0.00 0.00 38.49 3.18
6273 8823 0.179234 TCCACAAGGCACTCGACAAA 59.821 50.000 0.00 0.00 38.49 2.83
6274 8824 0.307760 CCACAAGGCACTCGACAAAC 59.692 55.000 0.00 0.00 38.49 2.93
6275 8825 0.042188 CACAAGGCACTCGACAAACG 60.042 55.000 0.00 0.00 38.49 3.60
6285 8835 2.113214 CGACAAACGAACGCTTTGC 58.887 52.632 15.81 10.86 45.77 3.68
6286 8836 0.315869 CGACAAACGAACGCTTTGCT 60.316 50.000 15.81 8.33 45.77 3.91
6287 8837 1.112459 GACAAACGAACGCTTTGCTG 58.888 50.000 15.81 1.60 32.71 4.41
6288 8838 0.730265 ACAAACGAACGCTTTGCTGA 59.270 45.000 15.81 0.00 32.71 4.26
6289 8839 1.268032 ACAAACGAACGCTTTGCTGAG 60.268 47.619 15.81 0.00 32.71 3.35
6290 8840 1.014352 AAACGAACGCTTTGCTGAGT 58.986 45.000 0.00 0.00 0.00 3.41
6291 8841 1.014352 AACGAACGCTTTGCTGAGTT 58.986 45.000 0.00 0.00 32.92 3.01
6292 8842 0.582005 ACGAACGCTTTGCTGAGTTC 59.418 50.000 0.00 9.86 41.24 3.01
6293 8843 0.110644 CGAACGCTTTGCTGAGTTCC 60.111 55.000 12.60 1.46 41.48 3.62
6294 8844 0.944386 GAACGCTTTGCTGAGTTCCA 59.056 50.000 9.13 0.00 39.63 3.53
6295 8845 0.947244 AACGCTTTGCTGAGTTCCAG 59.053 50.000 0.00 0.00 45.67 3.86
6302 8852 3.957260 CTGAGTTCCAGCCACGTG 58.043 61.111 9.08 9.08 35.89 4.49
6303 8853 1.669115 CTGAGTTCCAGCCACGTGG 60.669 63.158 30.66 30.66 39.19 4.94
6304 8854 2.099652 CTGAGTTCCAGCCACGTGGA 62.100 60.000 38.30 14.79 45.37 4.02
6308 8858 2.741092 TCCAGCCACGTGGAACTC 59.259 61.111 38.30 19.93 44.01 3.01
6324 8874 7.260365 CGTGGAACTCGACAAACTTATTTGTG 61.260 42.308 9.99 3.78 46.78 3.33
6325 8875 9.510490 CGTGGAACTCGACAAACTTATTTGTGT 62.510 40.741 9.99 0.21 46.78 3.72
6336 8886 8.183830 CAAACTTATTTGTGTTTTTCAGAGCA 57.816 30.769 0.00 0.00 40.39 4.26
6337 8887 8.819974 CAAACTTATTTGTGTTTTTCAGAGCAT 58.180 29.630 0.00 0.00 40.39 3.79
6338 8888 8.579682 AACTTATTTGTGTTTTTCAGAGCATC 57.420 30.769 0.00 0.00 0.00 3.91
6350 8900 3.677002 GAGCATCTACAGCTGGACC 57.323 57.895 19.93 1.88 43.58 4.46
6351 8901 1.118838 GAGCATCTACAGCTGGACCT 58.881 55.000 19.93 6.67 43.58 3.85
6352 8902 1.068434 GAGCATCTACAGCTGGACCTC 59.932 57.143 19.93 11.58 43.58 3.85
6353 8903 1.118838 GCATCTACAGCTGGACCTCT 58.881 55.000 19.93 0.00 0.00 3.69
6354 8904 1.068434 GCATCTACAGCTGGACCTCTC 59.932 57.143 19.93 0.00 0.00 3.20
6355 8905 2.382882 CATCTACAGCTGGACCTCTCA 58.617 52.381 19.93 0.00 0.00 3.27
6356 8906 2.604912 TCTACAGCTGGACCTCTCAA 57.395 50.000 19.93 0.00 0.00 3.02
6357 8907 2.889512 TCTACAGCTGGACCTCTCAAA 58.110 47.619 19.93 0.00 0.00 2.69
6360 8910 0.322008 CAGCTGGACCTCTCAAACCC 60.322 60.000 5.57 0.00 0.00 4.11
6414 8965 0.685458 GGGTACGTAGGAGAGGGCAA 60.685 60.000 0.00 0.00 0.00 4.52
6430 8981 0.108329 GCAAAGTCCTAGCTACGGCA 60.108 55.000 0.00 0.00 41.70 5.69
6439 8990 2.102588 CCTAGCTACGGCAAGGTTGTAT 59.897 50.000 0.00 0.00 41.70 2.29
6535 9087 4.346709 TGATTGGAGTGTTGAGTTACAGGA 59.653 41.667 0.00 0.00 0.00 3.86
6536 9088 4.764050 TTGGAGTGTTGAGTTACAGGAA 57.236 40.909 0.00 0.00 0.00 3.36
6585 9138 1.275291 TGGCTTATATAGAGTGCGCCC 59.725 52.381 4.18 0.00 35.28 6.13
6614 9167 1.009829 CATCCTCAGTTACGCAAGGC 58.990 55.000 0.00 0.00 46.39 4.35
6742 9296 2.223852 GGTCTTCTATCCTTCGAGTGGC 60.224 54.545 2.10 0.00 0.00 5.01
6851 9405 4.506979 GGGGATCTCAGTCGGTATCTTCTA 60.507 50.000 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 5.889853 TCTGATGGAGATTTTATGCAAGCTT 59.110 36.000 0.00 0.00 0.00 3.74
185 186 9.998106 ACAACTCAACACTTAATCTGTAAGTAT 57.002 29.630 0.00 0.00 36.14 2.12
219 237 7.825270 TCCTTCTTTTACAACACTGACACTTAA 59.175 33.333 0.00 0.00 0.00 1.85
220 238 7.279313 GTCCTTCTTTTACAACACTGACACTTA 59.721 37.037 0.00 0.00 0.00 2.24
223 241 5.353123 TGTCCTTCTTTTACAACACTGACAC 59.647 40.000 0.00 0.00 0.00 3.67
296 319 7.502561 AGCTTGTTTACCACAAAAATAGTCTCT 59.497 33.333 0.00 0.00 45.11 3.10
323 346 1.526917 GGAAGCGCCATACATGCCT 60.527 57.895 2.29 0.00 36.34 4.75
366 648 6.272318 AGTATGCTCTTCAATCTCTTCTTCG 58.728 40.000 0.00 0.00 0.00 3.79
389 671 6.600882 TTTCCTCAAGTAACCCAGTAGTAG 57.399 41.667 0.00 0.00 0.00 2.57
450 732 1.194547 CGTTGATTCAGTCGGGTTGTG 59.805 52.381 5.74 0.00 0.00 3.33
470 752 4.090642 CCGTCCAGAGATATACGTACGTAC 59.909 50.000 28.99 17.01 33.63 3.67
471 753 4.022329 TCCGTCCAGAGATATACGTACGTA 60.022 45.833 28.62 28.62 33.63 3.57
472 754 3.062763 CCGTCCAGAGATATACGTACGT 58.937 50.000 25.98 25.98 33.63 3.57
474 756 4.564041 TCTCCGTCCAGAGATATACGTAC 58.436 47.826 0.00 0.00 37.98 3.67
475 757 4.818642 CTCTCCGTCCAGAGATATACGTA 58.181 47.826 0.00 0.00 42.44 3.57
556 1004 4.615452 CGAGTGAGAAAAACGCTACCTACT 60.615 45.833 0.00 0.00 0.00 2.57
747 1347 1.583495 GCCACAAGGGAACTAACCGC 61.583 60.000 0.00 0.00 42.68 5.68
931 1541 6.375455 AGCAATTAATTAAGCTGCTACTGTGT 59.625 34.615 25.23 9.11 36.87 3.72
1236 1867 4.281527 ACCCTGCTGCTGCTGCTT 62.282 61.111 27.67 10.41 40.48 3.91
1242 1873 4.790962 ATCGCCACCCTGCTGCTG 62.791 66.667 0.00 0.00 0.00 4.41
1243 1874 4.790962 CATCGCCACCCTGCTGCT 62.791 66.667 0.00 0.00 0.00 4.24
1244 1875 4.783621 TCATCGCCACCCTGCTGC 62.784 66.667 0.00 0.00 0.00 5.25
1245 1876 2.821366 GTCATCGCCACCCTGCTG 60.821 66.667 0.00 0.00 0.00 4.41
1246 1877 4.457496 CGTCATCGCCACCCTGCT 62.457 66.667 0.00 0.00 0.00 4.24
1247 1878 4.451150 TCGTCATCGCCACCCTGC 62.451 66.667 0.00 0.00 36.96 4.85
1248 1879 2.202797 CTCGTCATCGCCACCCTG 60.203 66.667 0.00 0.00 36.96 4.45
1249 1880 3.461773 CCTCGTCATCGCCACCCT 61.462 66.667 0.00 0.00 36.96 4.34
1250 1881 3.771160 ACCTCGTCATCGCCACCC 61.771 66.667 0.00 0.00 36.96 4.61
1256 1887 1.226802 CTCCAGCACCTCGTCATCG 60.227 63.158 0.00 0.00 38.55 3.84
1262 1893 2.997315 TCCACCTCCAGCACCTCG 60.997 66.667 0.00 0.00 0.00 4.63
1445 2076 2.082231 GTGCTGGAGTAGACGTACAGA 58.918 52.381 0.00 0.00 0.00 3.41
1448 2079 1.461559 AGGTGCTGGAGTAGACGTAC 58.538 55.000 0.00 0.00 0.00 3.67
1586 2217 1.736365 TTGTGTGCGTACCGTCTCCA 61.736 55.000 0.00 0.00 0.00 3.86
1602 2233 4.844349 TGGAGGAGCTAAGCTAATTTGT 57.156 40.909 0.00 0.00 39.88 2.83
1605 2236 5.606329 AGAAGATGGAGGAGCTAAGCTAATT 59.394 40.000 0.00 0.00 39.88 1.40
1606 2237 5.154418 AGAAGATGGAGGAGCTAAGCTAAT 58.846 41.667 0.00 0.00 39.88 1.73
1607 2238 4.551671 AGAAGATGGAGGAGCTAAGCTAA 58.448 43.478 0.00 0.00 39.88 3.09
1609 2240 3.044873 AGAAGATGGAGGAGCTAAGCT 57.955 47.619 0.00 0.00 43.88 3.74
1611 2242 5.453198 GGAAGAAGAAGATGGAGGAGCTAAG 60.453 48.000 0.00 0.00 0.00 2.18
1614 2245 2.771372 GGAAGAAGAAGATGGAGGAGCT 59.229 50.000 0.00 0.00 0.00 4.09
1615 2246 2.771372 AGGAAGAAGAAGATGGAGGAGC 59.229 50.000 0.00 0.00 0.00 4.70
1624 2255 6.081356 AGAAGAAAGAGGAGGAAGAAGAAGA 58.919 40.000 0.00 0.00 0.00 2.87
1629 2260 6.755542 AGAAAGAAGAAAGAGGAGGAAGAA 57.244 37.500 0.00 0.00 0.00 2.52
1825 2463 1.158434 AGAGACGACAAGAGACGGTC 58.842 55.000 0.00 0.00 37.24 4.79
1936 2591 6.758886 GCTAACTACAGTACGAACTACTCCTA 59.241 42.308 0.00 0.00 32.90 2.94
1937 2592 5.584251 GCTAACTACAGTACGAACTACTCCT 59.416 44.000 0.00 0.00 32.90 3.69
1938 2593 5.501574 CGCTAACTACAGTACGAACTACTCC 60.502 48.000 0.00 0.00 32.90 3.85
1939 2594 5.289675 TCGCTAACTACAGTACGAACTACTC 59.710 44.000 0.00 0.00 32.90 2.59
1940 2595 5.171476 TCGCTAACTACAGTACGAACTACT 58.829 41.667 0.00 0.00 35.94 2.57
1941 2596 5.456192 TCGCTAACTACAGTACGAACTAC 57.544 43.478 0.00 0.00 33.48 2.73
2000 2655 7.931407 TGCATGTACTCAATCGTAGGATTATTT 59.069 33.333 10.18 1.15 40.90 1.40
2015 2676 3.650281 ACATTCCCATGCATGTACTCA 57.350 42.857 24.58 4.98 31.60 3.41
2117 2785 0.596600 CGAACGTACCGCCTGCATAT 60.597 55.000 0.00 0.00 0.00 1.78
2118 2786 1.226745 CGAACGTACCGCCTGCATA 60.227 57.895 0.00 0.00 0.00 3.14
2306 2974 0.967887 TCGTCTCCAGGAGCTCCTTG 60.968 60.000 33.33 28.71 46.09 3.61
2432 3100 2.273776 GCCTTCTCCTTGAGCCCC 59.726 66.667 0.00 0.00 0.00 5.80
2453 3224 2.046938 CGTACCTGTGGTGAGGTGT 58.953 57.895 0.00 0.00 46.43 4.16
2500 3274 5.334414 GGCGCTAGTACGTATACTGTACAAT 60.334 44.000 25.65 15.91 43.61 2.71
2550 3359 2.120232 CGGCTGATCGAGTTGTATGTC 58.880 52.381 0.00 0.00 0.00 3.06
2627 3446 1.664659 CGCTACGCTACACTACACTCT 59.335 52.381 0.00 0.00 0.00 3.24
2629 3448 1.129998 CACGCTACGCTACACTACACT 59.870 52.381 0.00 0.00 0.00 3.55
2630 3449 1.129251 TCACGCTACGCTACACTACAC 59.871 52.381 0.00 0.00 0.00 2.90
2631 3450 1.441738 TCACGCTACGCTACACTACA 58.558 50.000 0.00 0.00 0.00 2.74
2632 3451 2.752144 ATCACGCTACGCTACACTAC 57.248 50.000 0.00 0.00 0.00 2.73
2633 3452 3.770263 AAATCACGCTACGCTACACTA 57.230 42.857 0.00 0.00 0.00 2.74
2644 3463 1.062587 GCGTTGCATCTAAATCACGCT 59.937 47.619 18.17 0.00 41.37 5.07
2702 3527 3.819902 TCGCATCAATTAATATGCCTGCA 59.180 39.130 14.68 0.00 44.50 4.41
2703 3528 4.154737 TCTCGCATCAATTAATATGCCTGC 59.845 41.667 14.68 12.49 44.50 4.85
2704 3529 5.868043 TCTCGCATCAATTAATATGCCTG 57.132 39.130 14.68 9.37 44.50 4.85
2705 3530 6.882610 TTTCTCGCATCAATTAATATGCCT 57.117 33.333 14.68 0.00 44.50 4.75
2866 3966 2.191375 CTGCTGGATGGCGATGGT 59.809 61.111 0.00 0.00 34.52 3.55
2918 4024 5.591472 TCTTAGACGAGTAATTCCGAATGGA 59.409 40.000 0.00 0.00 44.61 3.41
2919 4025 5.828747 TCTTAGACGAGTAATTCCGAATGG 58.171 41.667 0.00 0.00 0.00 3.16
2920 4026 7.751047 TTTCTTAGACGAGTAATTCCGAATG 57.249 36.000 0.00 0.00 0.00 2.67
2921 4027 8.195436 TCATTTCTTAGACGAGTAATTCCGAAT 58.805 33.333 0.00 0.00 0.00 3.34
2922 4028 7.541162 TCATTTCTTAGACGAGTAATTCCGAA 58.459 34.615 0.00 0.00 0.00 4.30
2923 4029 7.092137 TCATTTCTTAGACGAGTAATTCCGA 57.908 36.000 0.00 0.00 0.00 4.55
2924 4030 7.751047 TTCATTTCTTAGACGAGTAATTCCG 57.249 36.000 0.00 0.00 0.00 4.30
2925 4031 8.064814 GCATTCATTTCTTAGACGAGTAATTCC 58.935 37.037 0.00 0.00 0.00 3.01
2926 4032 8.604035 TGCATTCATTTCTTAGACGAGTAATTC 58.396 33.333 0.00 0.00 0.00 2.17
2927 4033 8.492673 TGCATTCATTTCTTAGACGAGTAATT 57.507 30.769 0.00 0.00 0.00 1.40
2928 4034 8.668510 ATGCATTCATTTCTTAGACGAGTAAT 57.331 30.769 0.00 0.00 0.00 1.89
2929 4035 7.981789 AGATGCATTCATTTCTTAGACGAGTAA 59.018 33.333 0.00 0.00 31.96 2.24
2930 4036 7.492524 AGATGCATTCATTTCTTAGACGAGTA 58.507 34.615 0.00 0.00 31.96 2.59
2931 4037 6.344500 AGATGCATTCATTTCTTAGACGAGT 58.656 36.000 0.00 0.00 31.96 4.18
2932 4038 6.841443 AGATGCATTCATTTCTTAGACGAG 57.159 37.500 0.00 0.00 31.96 4.18
2933 4039 7.716612 TCTAGATGCATTCATTTCTTAGACGA 58.283 34.615 0.00 0.00 31.96 4.20
2934 4040 7.936950 TCTAGATGCATTCATTTCTTAGACG 57.063 36.000 0.00 0.00 31.96 4.18
2935 4041 9.270640 ACATCTAGATGCATTCATTTCTTAGAC 57.729 33.333 28.86 0.00 42.39 2.59
2971 4077 8.308931 ACTTGTCACAAAAATGAATGCATCTAT 58.691 29.630 0.00 0.00 32.35 1.98
2972 4078 7.660112 ACTTGTCACAAAAATGAATGCATCTA 58.340 30.769 0.00 0.00 32.35 1.98
2973 4079 6.518493 ACTTGTCACAAAAATGAATGCATCT 58.482 32.000 0.00 0.00 32.35 2.90
2978 4084 9.782028 CGAAATTACTTGTCACAAAAATGAATG 57.218 29.630 0.00 0.00 0.00 2.67
2979 4085 9.743057 TCGAAATTACTTGTCACAAAAATGAAT 57.257 25.926 0.00 0.00 0.00 2.57
2980 4086 9.574458 TTCGAAATTACTTGTCACAAAAATGAA 57.426 25.926 0.00 0.00 0.00 2.57
2982 4088 7.990499 CGTTCGAAATTACTTGTCACAAAAATG 59.010 33.333 0.00 0.00 0.00 2.32
2987 4093 5.970140 TCGTTCGAAATTACTTGTCACAA 57.030 34.783 0.00 0.00 0.00 3.33
2988 4094 5.050634 CCTTCGTTCGAAATTACTTGTCACA 60.051 40.000 0.00 0.00 0.00 3.58
2989 4095 5.176223 TCCTTCGTTCGAAATTACTTGTCAC 59.824 40.000 0.00 0.00 0.00 3.67
2992 4098 5.756833 ACTTCCTTCGTTCGAAATTACTTGT 59.243 36.000 0.00 0.00 0.00 3.16
2993 4099 6.224420 ACTTCCTTCGTTCGAAATTACTTG 57.776 37.500 0.00 0.00 0.00 3.16
2994 4100 7.150640 ACTACTTCCTTCGTTCGAAATTACTT 58.849 34.615 0.00 0.00 0.00 2.24
2995 4101 6.685657 ACTACTTCCTTCGTTCGAAATTACT 58.314 36.000 0.00 0.00 0.00 2.24
3002 4108 9.935241 ACTATATATACTACTTCCTTCGTTCGA 57.065 33.333 0.00 0.00 0.00 3.71
3003 4109 9.970243 CACTATATATACTACTTCCTTCGTTCG 57.030 37.037 0.00 0.00 0.00 3.95
3006 4112 9.669887 CTCCACTATATATACTACTTCCTTCGT 57.330 37.037 0.00 0.00 0.00 3.85
3007 4113 9.669887 ACTCCACTATATATACTACTTCCTTCG 57.330 37.037 0.00 0.00 0.00 3.79
3014 4120 8.877779 CGCGTAAACTCCACTATATATACTACT 58.122 37.037 0.00 0.00 0.00 2.57
3015 4121 8.119226 CCGCGTAAACTCCACTATATATACTAC 58.881 40.741 4.92 0.00 0.00 2.73
3016 4122 7.201644 GCCGCGTAAACTCCACTATATATACTA 60.202 40.741 4.92 0.00 0.00 1.82
3017 4123 6.404074 GCCGCGTAAACTCCACTATATATACT 60.404 42.308 4.92 0.00 0.00 2.12
3031 4137 1.374252 CAGTGAGGCCGCGTAAACT 60.374 57.895 4.92 0.00 0.00 2.66
3040 4146 0.462759 GTGTGGATAGCAGTGAGGCC 60.463 60.000 0.00 0.00 0.00 5.19
3060 4166 4.096311 TGTACTCGTACTCGTACTCGTAC 58.904 47.826 18.54 18.54 38.43 3.67
3061 4167 4.343609 CTGTACTCGTACTCGTACTCGTA 58.656 47.826 17.12 4.25 37.47 3.43
3062 4168 3.175152 CTGTACTCGTACTCGTACTCGT 58.825 50.000 17.12 5.05 37.47 4.18
3063 4169 2.533535 CCTGTACTCGTACTCGTACTCG 59.466 54.545 17.12 10.91 37.47 4.18
3064 4170 2.283884 GCCTGTACTCGTACTCGTACTC 59.716 54.545 17.12 7.59 37.47 2.59
3065 4171 2.093764 AGCCTGTACTCGTACTCGTACT 60.094 50.000 17.12 1.43 37.47 2.73
3141 4247 0.792640 GGTGTGTGCATCTCGAGTTG 59.207 55.000 17.42 17.42 0.00 3.16
3142 4248 0.681733 AGGTGTGTGCATCTCGAGTT 59.318 50.000 13.13 0.15 27.80 3.01
3143 4249 0.037882 CAGGTGTGTGCATCTCGAGT 60.038 55.000 13.13 0.00 32.89 4.18
3144 4250 0.244721 TCAGGTGTGTGCATCTCGAG 59.755 55.000 5.93 5.93 32.89 4.04
3188 4294 5.330455 ACATCTACTGTACATGTGAGGTG 57.670 43.478 9.11 6.89 35.91 4.00
3266 4384 3.568007 ACAAGTTAACACGCACCATTCAT 59.432 39.130 8.61 0.00 0.00 2.57
3267 4385 2.946329 ACAAGTTAACACGCACCATTCA 59.054 40.909 8.61 0.00 0.00 2.57
3268 4386 3.002862 TGACAAGTTAACACGCACCATTC 59.997 43.478 8.61 0.00 0.00 2.67
3269 4387 2.946329 TGACAAGTTAACACGCACCATT 59.054 40.909 8.61 0.00 0.00 3.16
3321 4444 1.575244 ACACATCTCCGAATCATGCG 58.425 50.000 0.00 0.00 0.00 4.73
3422 4545 4.150897 TGGAGTTTACTGTTGCTCTTGT 57.849 40.909 0.00 0.00 0.00 3.16
3447 4570 7.327975 TCTCAAAGAAAAAGTATCGGCATAGA 58.672 34.615 0.00 0.00 0.00 1.98
3499 4622 0.038892 TAGAGGTTTCACACGCCGTC 60.039 55.000 0.00 0.00 0.00 4.79
3562 4685 2.727123 TGGGCGTCACATCCATTAAT 57.273 45.000 0.00 0.00 0.00 1.40
3592 4717 4.708726 ATGCTGATTTGCAAGTTAGGAC 57.291 40.909 14.29 1.21 46.61 3.85
3593 4718 5.252547 TGTATGCTGATTTGCAAGTTAGGA 58.747 37.500 14.29 12.25 46.61 2.94
3594 4719 5.565592 TGTATGCTGATTTGCAAGTTAGG 57.434 39.130 14.29 1.69 46.61 2.69
3641 4766 1.133761 AGCTACGACTAGGCTGGATCA 60.134 52.381 4.33 0.00 34.82 2.92
3642 4767 1.611519 AGCTACGACTAGGCTGGATC 58.388 55.000 4.33 0.00 34.82 3.36
3643 4768 2.074729 AAGCTACGACTAGGCTGGAT 57.925 50.000 4.33 0.00 36.37 3.41
3815 4975 4.949856 AGTGCTGGGGTATTCTTGTTATTG 59.050 41.667 0.00 0.00 0.00 1.90
3816 4976 4.949856 CAGTGCTGGGGTATTCTTGTTATT 59.050 41.667 0.00 0.00 0.00 1.40
3840 5003 1.407979 ACATCCGTCCGTCCATTAGTC 59.592 52.381 0.00 0.00 0.00 2.59
3844 5007 1.024579 GCAACATCCGTCCGTCCATT 61.025 55.000 0.00 0.00 0.00 3.16
3847 5010 1.449601 ATGCAACATCCGTCCGTCC 60.450 57.895 0.00 0.00 0.00 4.79
4061 5228 2.324215 CCGGAAGTAGTCGGCGATA 58.676 57.895 14.79 3.81 39.78 2.92
4079 5246 2.127232 GCGTCCTTCTTGTTGCGC 60.127 61.111 0.00 0.00 38.15 6.09
4097 5264 3.917760 CCGCCGAGGGAGATCCAC 61.918 72.222 0.47 0.00 38.24 4.02
4268 6405 1.227853 GAACGTGTTGGCCACCTCT 60.228 57.895 3.88 0.00 41.26 3.69
4283 6423 0.901580 TCGGGGTGGACCTGTAGAAC 60.902 60.000 0.00 0.00 46.44 3.01
4808 7326 4.664677 GACACCGTGCGCTCCAGT 62.665 66.667 9.73 0.90 0.00 4.00
4880 7398 1.258445 CCGTGTAGAAGAGCCCCACT 61.258 60.000 0.00 0.00 0.00 4.00
5000 7518 3.788766 GACATGTCCACGTGCGGC 61.789 66.667 15.31 5.82 36.36 6.53
5265 7783 2.169789 GCTGCTGCATCGTCATCGT 61.170 57.895 11.11 0.00 39.41 3.73
5324 7848 2.126031 GACGTCGACCTTGCCCTC 60.126 66.667 10.58 0.00 0.00 4.30
5325 7849 3.692406 GGACGTCGACCTTGCCCT 61.692 66.667 10.58 0.00 0.00 5.19
5351 7875 2.361104 ATGTTCATGCGCCCGGTT 60.361 55.556 4.18 0.00 0.00 4.44
5555 8079 1.047002 CCTCGATCTTGGCCATCTCT 58.953 55.000 6.09 0.00 0.00 3.10
5699 8223 2.026449 CCTGCAGTTCTTCCTGAGGAAT 60.026 50.000 15.35 0.00 41.23 3.01
5824 8348 2.104170 GACTGCAGGCTAGGTAGAAGT 58.896 52.381 19.93 0.00 0.00 3.01
5826 8350 1.007238 AGGACTGCAGGCTAGGTAGAA 59.993 52.381 21.42 0.00 0.00 2.10
5840 8364 2.359602 CAGCTGGGTGCAGGACTG 60.360 66.667 5.57 0.00 45.94 3.51
5841 8365 4.341783 GCAGCTGGGTGCAGGACT 62.342 66.667 17.12 0.00 45.94 3.85
6053 8599 9.916397 GAAGAATTACATCAACCTACAAATACG 57.084 33.333 0.00 0.00 0.00 3.06
6195 8745 5.501156 ACTTCATGGAACTCCCTAAATGTC 58.499 41.667 0.00 0.00 35.38 3.06
6197 8747 7.938140 TTTACTTCATGGAACTCCCTAAATG 57.062 36.000 0.00 0.00 35.38 2.32
6198 8748 8.803235 GTTTTTACTTCATGGAACTCCCTAAAT 58.197 33.333 0.00 0.00 35.38 1.40
6199 8749 8.002459 AGTTTTTACTTCATGGAACTCCCTAAA 58.998 33.333 0.00 0.00 35.38 1.85
6200 8750 7.523415 AGTTTTTACTTCATGGAACTCCCTAA 58.477 34.615 0.00 0.00 35.38 2.69
6201 8751 7.086685 AGTTTTTACTTCATGGAACTCCCTA 57.913 36.000 0.00 0.00 35.38 3.53
6202 8752 5.953571 AGTTTTTACTTCATGGAACTCCCT 58.046 37.500 0.00 0.00 35.38 4.20
6203 8753 6.374613 CCTAGTTTTTACTTCATGGAACTCCC 59.625 42.308 0.00 0.00 34.29 4.30
6213 8763 7.286775 ACATCCTTTTGCCTAGTTTTTACTTCA 59.713 33.333 0.00 0.00 0.00 3.02
6214 8764 7.658261 ACATCCTTTTGCCTAGTTTTTACTTC 58.342 34.615 0.00 0.00 0.00 3.01
6233 8783 0.613777 GAAACTCCGGGTGACATCCT 59.386 55.000 0.00 0.00 0.00 3.24
6239 8789 0.395312 GTGGAAGAAACTCCGGGTGA 59.605 55.000 0.00 0.00 38.44 4.02
6243 8793 1.523758 CCTTGTGGAAGAAACTCCGG 58.476 55.000 0.00 0.00 38.44 5.14
6244 8794 0.875059 GCCTTGTGGAAGAAACTCCG 59.125 55.000 0.00 0.00 38.44 4.63
6245 8795 1.609072 GTGCCTTGTGGAAGAAACTCC 59.391 52.381 0.00 0.00 35.88 3.85
6246 8796 2.550180 GAGTGCCTTGTGGAAGAAACTC 59.450 50.000 0.00 0.00 35.80 3.01
6247 8797 2.576615 GAGTGCCTTGTGGAAGAAACT 58.423 47.619 0.00 0.00 34.57 2.66
6248 8798 1.264288 CGAGTGCCTTGTGGAAGAAAC 59.736 52.381 0.00 0.00 34.57 2.78
6249 8799 1.140052 TCGAGTGCCTTGTGGAAGAAA 59.860 47.619 0.00 0.00 34.57 2.52
6250 8800 0.756294 TCGAGTGCCTTGTGGAAGAA 59.244 50.000 0.00 0.00 34.57 2.52
6251 8801 0.033504 GTCGAGTGCCTTGTGGAAGA 59.966 55.000 0.00 0.00 34.57 2.87
6252 8802 0.249868 TGTCGAGTGCCTTGTGGAAG 60.250 55.000 0.00 0.00 34.57 3.46
6253 8803 0.179234 TTGTCGAGTGCCTTGTGGAA 59.821 50.000 0.00 0.00 34.57 3.53
6254 8804 0.179234 TTTGTCGAGTGCCTTGTGGA 59.821 50.000 0.00 0.00 34.57 4.02
6255 8805 0.307760 GTTTGTCGAGTGCCTTGTGG 59.692 55.000 0.00 0.00 0.00 4.17
6256 8806 0.042188 CGTTTGTCGAGTGCCTTGTG 60.042 55.000 0.00 0.00 42.86 3.33
6257 8807 0.179094 TCGTTTGTCGAGTGCCTTGT 60.179 50.000 0.00 0.00 44.01 3.16
6258 8808 2.600388 TCGTTTGTCGAGTGCCTTG 58.400 52.632 0.00 0.00 44.01 3.61
6267 8817 0.315869 AGCAAAGCGTTCGTTTGTCG 60.316 50.000 15.40 0.00 37.25 4.35
6268 8818 1.112459 CAGCAAAGCGTTCGTTTGTC 58.888 50.000 15.40 10.79 37.25 3.18
6269 8819 0.730265 TCAGCAAAGCGTTCGTTTGT 59.270 45.000 15.40 6.17 37.25 2.83
6270 8820 1.268032 ACTCAGCAAAGCGTTCGTTTG 60.268 47.619 12.22 12.22 37.85 2.93
6271 8821 1.014352 ACTCAGCAAAGCGTTCGTTT 58.986 45.000 0.00 0.00 0.00 3.60
6272 8822 1.003866 GAACTCAGCAAAGCGTTCGTT 60.004 47.619 0.00 0.00 0.00 3.85
6273 8823 0.582005 GAACTCAGCAAAGCGTTCGT 59.418 50.000 0.00 0.00 0.00 3.85
6274 8824 0.110644 GGAACTCAGCAAAGCGTTCG 60.111 55.000 0.00 0.00 37.28 3.95
6275 8825 0.944386 TGGAACTCAGCAAAGCGTTC 59.056 50.000 0.00 0.00 36.06 3.95
6276 8826 0.947244 CTGGAACTCAGCAAAGCGTT 59.053 50.000 0.00 0.00 36.60 4.84
6277 8827 2.621763 CTGGAACTCAGCAAAGCGT 58.378 52.632 0.00 0.00 36.60 5.07
6285 8835 1.669115 CCACGTGGCTGGAACTCAG 60.669 63.158 24.02 0.00 46.03 3.35
6286 8836 1.691195 TTCCACGTGGCTGGAACTCA 61.691 55.000 30.25 6.19 44.05 3.41
6287 8837 1.070786 TTCCACGTGGCTGGAACTC 59.929 57.895 30.25 0.00 44.05 3.01
6288 8838 3.236391 TTCCACGTGGCTGGAACT 58.764 55.556 30.25 0.00 44.05 3.01
6290 8840 1.070786 GAGTTCCACGTGGCTGGAA 59.929 57.895 30.25 15.98 46.27 3.53
6291 8841 2.741092 GAGTTCCACGTGGCTGGA 59.259 61.111 30.25 9.97 38.66 3.86
6292 8842 2.738521 CGAGTTCCACGTGGCTGG 60.739 66.667 30.25 18.50 34.44 4.85
6293 8843 2.022129 GTCGAGTTCCACGTGGCTG 61.022 63.158 30.25 16.05 34.44 4.85
6294 8844 2.023414 TTGTCGAGTTCCACGTGGCT 62.023 55.000 30.25 21.59 34.44 4.75
6295 8845 1.155424 TTTGTCGAGTTCCACGTGGC 61.155 55.000 30.25 16.85 34.44 5.01
6296 8846 0.580104 GTTTGTCGAGTTCCACGTGG 59.420 55.000 29.26 29.26 0.00 4.94
6297 8847 1.567504 AGTTTGTCGAGTTCCACGTG 58.432 50.000 9.08 9.08 0.00 4.49
6298 8848 2.304751 AAGTTTGTCGAGTTCCACGT 57.695 45.000 0.00 0.00 0.00 4.49
6299 8849 4.985044 AATAAGTTTGTCGAGTTCCACG 57.015 40.909 0.00 0.00 0.00 4.94
6312 8862 8.947055 ATGCTCTGAAAAACACAAATAAGTTT 57.053 26.923 0.00 0.00 39.46 2.66
6313 8863 8.416329 AGATGCTCTGAAAAACACAAATAAGTT 58.584 29.630 0.00 0.00 0.00 2.66
6314 8864 7.945134 AGATGCTCTGAAAAACACAAATAAGT 58.055 30.769 0.00 0.00 0.00 2.24
6315 8865 9.334693 GTAGATGCTCTGAAAAACACAAATAAG 57.665 33.333 0.00 0.00 0.00 1.73
6316 8866 8.845227 TGTAGATGCTCTGAAAAACACAAATAA 58.155 29.630 0.00 0.00 0.00 1.40
6317 8867 8.389779 TGTAGATGCTCTGAAAAACACAAATA 57.610 30.769 0.00 0.00 0.00 1.40
6318 8868 7.275888 TGTAGATGCTCTGAAAAACACAAAT 57.724 32.000 0.00 0.00 0.00 2.32
6319 8869 6.691754 TGTAGATGCTCTGAAAAACACAAA 57.308 33.333 0.00 0.00 0.00 2.83
6320 8870 5.277974 GCTGTAGATGCTCTGAAAAACACAA 60.278 40.000 0.00 0.00 0.00 3.33
6321 8871 4.214119 GCTGTAGATGCTCTGAAAAACACA 59.786 41.667 0.00 0.00 0.00 3.72
6322 8872 4.453819 AGCTGTAGATGCTCTGAAAAACAC 59.546 41.667 0.00 0.00 35.67 3.32
6323 8873 4.453478 CAGCTGTAGATGCTCTGAAAAACA 59.547 41.667 5.25 0.00 38.92 2.83
6324 8874 4.142730 CCAGCTGTAGATGCTCTGAAAAAC 60.143 45.833 13.81 0.00 38.92 2.43
6325 8875 4.005650 CCAGCTGTAGATGCTCTGAAAAA 58.994 43.478 13.81 0.00 38.92 1.94
6326 8876 3.261643 TCCAGCTGTAGATGCTCTGAAAA 59.738 43.478 13.81 0.00 38.92 2.29
6327 8877 2.833943 TCCAGCTGTAGATGCTCTGAAA 59.166 45.455 13.81 0.00 38.92 2.69
6328 8878 2.167281 GTCCAGCTGTAGATGCTCTGAA 59.833 50.000 13.81 0.00 38.92 3.02
6329 8879 1.753649 GTCCAGCTGTAGATGCTCTGA 59.246 52.381 13.81 0.00 38.92 3.27
6330 8880 1.202510 GGTCCAGCTGTAGATGCTCTG 60.203 57.143 13.81 0.00 38.92 3.35
6331 8881 1.118838 GGTCCAGCTGTAGATGCTCT 58.881 55.000 13.81 0.00 38.92 4.09
6332 8882 1.068434 GAGGTCCAGCTGTAGATGCTC 59.932 57.143 13.81 0.00 38.92 4.26
6333 8883 1.118838 GAGGTCCAGCTGTAGATGCT 58.881 55.000 13.81 0.00 42.06 3.79
6334 8884 1.068434 GAGAGGTCCAGCTGTAGATGC 59.932 57.143 13.81 0.00 0.00 3.91
6335 8885 2.382882 TGAGAGGTCCAGCTGTAGATG 58.617 52.381 13.81 0.00 0.00 2.90
6336 8886 2.836636 TGAGAGGTCCAGCTGTAGAT 57.163 50.000 13.81 0.00 0.00 1.98
6337 8887 2.563179 GTTTGAGAGGTCCAGCTGTAGA 59.437 50.000 13.81 0.01 0.00 2.59
6338 8888 2.354203 GGTTTGAGAGGTCCAGCTGTAG 60.354 54.545 13.81 0.00 0.00 2.74
6339 8889 1.623811 GGTTTGAGAGGTCCAGCTGTA 59.376 52.381 13.81 0.00 0.00 2.74
6340 8890 0.398318 GGTTTGAGAGGTCCAGCTGT 59.602 55.000 13.81 0.00 0.00 4.40
6341 8891 0.322008 GGGTTTGAGAGGTCCAGCTG 60.322 60.000 6.78 6.78 0.00 4.24
6342 8892 1.831652 CGGGTTTGAGAGGTCCAGCT 61.832 60.000 0.00 0.00 0.00 4.24
6343 8893 1.376037 CGGGTTTGAGAGGTCCAGC 60.376 63.158 0.00 0.00 0.00 4.85
6344 8894 1.376037 GCGGGTTTGAGAGGTCCAG 60.376 63.158 0.00 0.00 0.00 3.86
6345 8895 1.841556 AGCGGGTTTGAGAGGTCCA 60.842 57.895 0.00 0.00 0.00 4.02
6346 8896 1.376037 CAGCGGGTTTGAGAGGTCC 60.376 63.158 0.00 0.00 0.00 4.46
6347 8897 0.670854 GACAGCGGGTTTGAGAGGTC 60.671 60.000 0.00 0.00 0.00 3.85
6348 8898 1.371558 GACAGCGGGTTTGAGAGGT 59.628 57.895 0.00 0.00 0.00 3.85
6349 8899 1.738099 CGACAGCGGGTTTGAGAGG 60.738 63.158 0.00 0.00 0.00 3.69
6350 8900 1.006102 ACGACAGCGGGTTTGAGAG 60.006 57.895 0.00 0.00 43.17 3.20
6351 8901 1.300620 CACGACAGCGGGTTTGAGA 60.301 57.895 0.00 0.00 43.17 3.27
6352 8902 2.317609 CCACGACAGCGGGTTTGAG 61.318 63.158 0.00 0.00 39.94 3.02
6353 8903 2.280524 CCACGACAGCGGGTTTGA 60.281 61.111 0.00 0.00 39.94 2.69
6354 8904 3.353836 CCCACGACAGCGGGTTTG 61.354 66.667 0.00 0.00 39.94 2.93
6355 8905 2.406002 ATTCCCACGACAGCGGGTTT 62.406 55.000 0.00 0.00 43.57 3.27
6356 8906 2.890766 ATTCCCACGACAGCGGGTT 61.891 57.895 0.00 0.00 43.57 4.11
6357 8907 3.319198 ATTCCCACGACAGCGGGT 61.319 61.111 0.00 0.00 43.57 5.28
6360 8910 1.153369 ATCCATTCCCACGACAGCG 60.153 57.895 0.00 0.00 44.79 5.18
6374 8924 4.202620 CCCCTATCTCTACTGTCAGATCCA 60.203 50.000 6.91 0.00 31.57 3.41
6430 8981 6.455360 TCGTAAATCCGAGTATACAACCTT 57.545 37.500 5.50 0.00 32.18 3.50
6535 9087 1.526575 CTGGCACAAGGGTTCGCATT 61.527 55.000 0.00 0.00 38.70 3.56
6536 9088 1.973281 CTGGCACAAGGGTTCGCAT 60.973 57.895 0.00 0.00 38.70 4.73
6585 9138 3.083349 TGAGGATGGCGAGGGGTG 61.083 66.667 0.00 0.00 0.00 4.61
6614 9167 7.993821 ACGTGACATTATACTCTCATTGAAG 57.006 36.000 0.00 0.00 0.00 3.02
6742 9296 6.128526 GGTTATTTCACTCGGAAGACAAGAAG 60.129 42.308 0.00 0.00 36.72 2.85
6781 9335 3.973973 AGATTCCACTCGGATATCCCAAA 59.026 43.478 16.36 1.26 42.41 3.28
6851 9405 7.873195 AGAGTCCAAGGCCTATAAAGTTAAAT 58.127 34.615 5.16 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.