Multiple sequence alignment - TraesCS2D01G266300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G266300 chr2D 100.000 2336 0 0 1 2336 324906058 324908393 0.000000e+00 4314
1 TraesCS2D01G266300 chr2D 97.235 217 5 1 1 217 90706680 90706465 1.320000e-97 366
2 TraesCS2D01G266300 chr2D 96.774 217 6 1 1 217 516783971 516783756 6.140000e-96 361
3 TraesCS2D01G266300 chr3D 94.974 1174 35 6 212 1365 535911059 535909890 0.000000e+00 1820
4 TraesCS2D01G266300 chr7A 93.045 1179 61 4 212 1371 42532003 42533179 0.000000e+00 1703
5 TraesCS2D01G266300 chr7A 92.924 1173 59 6 212 1365 183649791 183650958 0.000000e+00 1685
6 TraesCS2D01G266300 chr7A 92.997 357 25 0 1009 1365 40133086 40132730 2.660000e-144 521
7 TraesCS2D01G266300 chr2B 91.752 1176 62 9 215 1369 723313256 723312095 0.000000e+00 1602
8 TraesCS2D01G266300 chr2B 89.607 866 78 5 1471 2336 393874383 393875236 0.000000e+00 1090
9 TraesCS2D01G266300 chr2A 94.645 971 50 1 1368 2336 393339249 393338279 0.000000e+00 1504
10 TraesCS2D01G266300 chr2A 88.225 1172 101 11 212 1363 74270668 74269514 0.000000e+00 1365
11 TraesCS2D01G266300 chr1A 87.607 1170 108 13 212 1355 558942531 558941373 0.000000e+00 1323
12 TraesCS2D01G266300 chr1A 89.986 739 55 7 623 1356 558893476 558892752 0.000000e+00 937
13 TraesCS2D01G266300 chr1B 87.607 1049 93 15 338 1355 643457038 643455996 0.000000e+00 1182
14 TraesCS2D01G266300 chr6A 93.116 799 36 2 223 1002 75990199 75989401 0.000000e+00 1153
15 TraesCS2D01G266300 chr6A 92.225 373 29 0 1000 1372 75952062 75951690 1.590000e-146 529
16 TraesCS2D01G266300 chr6A 96.774 217 5 2 1 217 514315877 514315663 6.140000e-96 361
17 TraesCS2D01G266300 chr6B 91.238 856 56 3 529 1365 135355071 135355926 0.000000e+00 1147
18 TraesCS2D01G266300 chr6B 94.161 274 12 4 212 484 135354810 135355080 4.640000e-112 414
19 TraesCS2D01G266300 chr3A 90.594 606 53 4 761 1365 333215136 333214534 0.000000e+00 800
20 TraesCS2D01G266300 chr7D 90.719 334 24 5 1038 1367 191490670 191491000 2.760000e-119 438
21 TraesCS2D01G266300 chr7D 97.235 217 5 1 1 217 461589902 461590117 1.320000e-97 366
22 TraesCS2D01G266300 chr1D 88.202 356 23 10 338 674 466973324 466972969 7.770000e-110 407
23 TraesCS2D01G266300 chr1D 93.182 132 8 1 212 343 466973674 466973544 2.370000e-45 193
24 TraesCS2D01G266300 chr5D 98.104 211 4 0 1 211 472364791 472365001 3.670000e-98 368
25 TraesCS2D01G266300 chr5D 97.235 217 5 1 1 217 472357267 472357482 1.320000e-97 366
26 TraesCS2D01G266300 chr5D 97.630 211 5 0 1 211 506753640 506753850 1.710000e-96 363
27 TraesCS2D01G266300 chr4D 97.630 211 5 0 1 211 409655096 409654886 1.710000e-96 363
28 TraesCS2D01G266300 chr6D 96.774 217 5 2 1 217 59667476 59667690 6.140000e-96 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G266300 chr2D 324906058 324908393 2335 False 4314.0 4314 100.0000 1 2336 1 chr2D.!!$F1 2335
1 TraesCS2D01G266300 chr3D 535909890 535911059 1169 True 1820.0 1820 94.9740 212 1365 1 chr3D.!!$R1 1153
2 TraesCS2D01G266300 chr7A 42532003 42533179 1176 False 1703.0 1703 93.0450 212 1371 1 chr7A.!!$F1 1159
3 TraesCS2D01G266300 chr7A 183649791 183650958 1167 False 1685.0 1685 92.9240 212 1365 1 chr7A.!!$F2 1153
4 TraesCS2D01G266300 chr2B 723312095 723313256 1161 True 1602.0 1602 91.7520 215 1369 1 chr2B.!!$R1 1154
5 TraesCS2D01G266300 chr2B 393874383 393875236 853 False 1090.0 1090 89.6070 1471 2336 1 chr2B.!!$F1 865
6 TraesCS2D01G266300 chr2A 393338279 393339249 970 True 1504.0 1504 94.6450 1368 2336 1 chr2A.!!$R2 968
7 TraesCS2D01G266300 chr2A 74269514 74270668 1154 True 1365.0 1365 88.2250 212 1363 1 chr2A.!!$R1 1151
8 TraesCS2D01G266300 chr1A 558941373 558942531 1158 True 1323.0 1323 87.6070 212 1355 1 chr1A.!!$R2 1143
9 TraesCS2D01G266300 chr1A 558892752 558893476 724 True 937.0 937 89.9860 623 1356 1 chr1A.!!$R1 733
10 TraesCS2D01G266300 chr1B 643455996 643457038 1042 True 1182.0 1182 87.6070 338 1355 1 chr1B.!!$R1 1017
11 TraesCS2D01G266300 chr6A 75989401 75990199 798 True 1153.0 1153 93.1160 223 1002 1 chr6A.!!$R2 779
12 TraesCS2D01G266300 chr6B 135354810 135355926 1116 False 780.5 1147 92.6995 212 1365 2 chr6B.!!$F1 1153
13 TraesCS2D01G266300 chr3A 333214534 333215136 602 True 800.0 800 90.5940 761 1365 1 chr3A.!!$R1 604
14 TraesCS2D01G266300 chr1D 466972969 466973674 705 True 300.0 407 90.6920 212 674 2 chr1D.!!$R1 462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.107654 CCTCGAAGGGGTTCCACATC 60.108 60.0 0.0 0.0 34.83 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1706 0.034337 ATCACACCGCCTACGTGTTT 59.966 50.0 0.0 0.0 37.7 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.910351 AAAAGTAAAATGTAGAGTCTTGAGCT 57.090 30.769 0.00 0.00 0.00 4.09
37 38 8.910351 AAAGTAAAATGTAGAGTCTTGAGCTT 57.090 30.769 0.00 0.00 0.00 3.74
38 39 8.910351 AAGTAAAATGTAGAGTCTTGAGCTTT 57.090 30.769 0.00 0.00 0.00 3.51
39 40 8.910351 AGTAAAATGTAGAGTCTTGAGCTTTT 57.090 30.769 0.00 1.59 0.00 2.27
40 41 8.778358 AGTAAAATGTAGAGTCTTGAGCTTTTG 58.222 33.333 0.00 0.00 0.00 2.44
41 42 7.807977 AAAATGTAGAGTCTTGAGCTTTTGA 57.192 32.000 0.00 0.00 0.00 2.69
42 43 7.432350 AAATGTAGAGTCTTGAGCTTTTGAG 57.568 36.000 0.00 0.00 0.00 3.02
43 44 4.310769 TGTAGAGTCTTGAGCTTTTGAGC 58.689 43.478 0.00 0.00 0.00 4.26
45 46 4.084011 AGAGTCTTGAGCTTTTGAGCTT 57.916 40.909 2.06 0.00 46.36 3.74
46 47 3.814283 AGAGTCTTGAGCTTTTGAGCTTG 59.186 43.478 2.06 0.00 46.36 4.01
47 48 3.812053 GAGTCTTGAGCTTTTGAGCTTGA 59.188 43.478 2.06 0.05 46.36 3.02
48 49 3.814283 AGTCTTGAGCTTTTGAGCTTGAG 59.186 43.478 2.06 4.43 46.36 3.02
49 50 2.551459 TCTTGAGCTTTTGAGCTTGAGC 59.449 45.455 2.06 0.00 46.36 4.26
50 51 1.242076 TGAGCTTTTGAGCTTGAGCC 58.758 50.000 2.06 0.00 46.36 4.70
51 52 1.242076 GAGCTTTTGAGCTTGAGCCA 58.758 50.000 2.06 0.00 46.36 4.75
52 53 1.610522 GAGCTTTTGAGCTTGAGCCAA 59.389 47.619 2.06 1.54 46.36 4.52
53 54 2.230750 GAGCTTTTGAGCTTGAGCCAAT 59.769 45.455 2.06 0.00 46.36 3.16
54 55 2.230750 AGCTTTTGAGCTTGAGCCAATC 59.769 45.455 0.00 0.00 43.52 2.67
55 56 2.673326 GCTTTTGAGCTTGAGCCAATCC 60.673 50.000 0.00 0.00 43.38 3.01
56 57 2.592102 TTTGAGCTTGAGCCAATCCT 57.408 45.000 0.00 0.00 43.38 3.24
57 58 2.119801 TTGAGCTTGAGCCAATCCTC 57.880 50.000 0.00 0.00 43.38 3.71
58 59 1.283347 TGAGCTTGAGCCAATCCTCT 58.717 50.000 0.00 0.00 43.38 3.69
59 60 1.065636 TGAGCTTGAGCCAATCCTCTG 60.066 52.381 0.00 0.00 43.38 3.35
60 61 0.990374 AGCTTGAGCCAATCCTCTGT 59.010 50.000 0.00 0.00 43.38 3.41
61 62 1.065564 AGCTTGAGCCAATCCTCTGTC 60.066 52.381 0.00 0.00 43.38 3.51
62 63 2.016096 GCTTGAGCCAATCCTCTGTCC 61.016 57.143 0.00 0.00 33.02 4.02
63 64 1.558756 CTTGAGCCAATCCTCTGTCCT 59.441 52.381 0.00 0.00 33.02 3.85
64 65 1.661463 TGAGCCAATCCTCTGTCCTT 58.339 50.000 0.00 0.00 33.02 3.36
65 66 2.832838 TGAGCCAATCCTCTGTCCTTA 58.167 47.619 0.00 0.00 33.02 2.69
66 67 2.768527 TGAGCCAATCCTCTGTCCTTAG 59.231 50.000 0.00 0.00 33.02 2.18
67 68 1.488393 AGCCAATCCTCTGTCCTTAGC 59.512 52.381 0.00 0.00 0.00 3.09
68 69 1.210478 GCCAATCCTCTGTCCTTAGCA 59.790 52.381 0.00 0.00 0.00 3.49
69 70 2.911484 CCAATCCTCTGTCCTTAGCAC 58.089 52.381 0.00 0.00 0.00 4.40
70 71 2.420687 CCAATCCTCTGTCCTTAGCACC 60.421 54.545 0.00 0.00 0.00 5.01
71 72 2.503356 CAATCCTCTGTCCTTAGCACCT 59.497 50.000 0.00 0.00 0.00 4.00
72 73 1.853963 TCCTCTGTCCTTAGCACCTC 58.146 55.000 0.00 0.00 0.00 3.85
73 74 0.457851 CCTCTGTCCTTAGCACCTCG 59.542 60.000 0.00 0.00 0.00 4.63
74 75 1.464734 CTCTGTCCTTAGCACCTCGA 58.535 55.000 0.00 0.00 0.00 4.04
75 76 1.819288 CTCTGTCCTTAGCACCTCGAA 59.181 52.381 0.00 0.00 0.00 3.71
76 77 1.819288 TCTGTCCTTAGCACCTCGAAG 59.181 52.381 0.00 0.00 0.00 3.79
77 78 0.895530 TGTCCTTAGCACCTCGAAGG 59.104 55.000 0.00 0.00 45.57 3.46
78 79 0.175989 GTCCTTAGCACCTCGAAGGG 59.824 60.000 5.98 0.00 44.68 3.95
79 80 0.976073 TCCTTAGCACCTCGAAGGGG 60.976 60.000 5.98 2.84 44.68 4.79
80 81 1.265454 CCTTAGCACCTCGAAGGGGT 61.265 60.000 0.00 0.00 42.17 4.95
81 82 0.613777 CTTAGCACCTCGAAGGGGTT 59.386 55.000 0.00 0.00 42.17 4.11
82 83 0.611714 TTAGCACCTCGAAGGGGTTC 59.388 55.000 0.00 0.00 42.17 3.62
83 84 1.262640 TAGCACCTCGAAGGGGTTCC 61.263 60.000 0.00 0.00 42.17 3.62
84 85 2.890766 GCACCTCGAAGGGGTTCCA 61.891 63.158 5.27 0.00 42.17 3.53
85 86 1.003718 CACCTCGAAGGGGTTCCAC 60.004 63.158 5.98 0.00 40.58 4.02
86 87 1.460689 ACCTCGAAGGGGTTCCACA 60.461 57.895 5.98 0.00 40.58 4.17
87 88 0.840722 ACCTCGAAGGGGTTCCACAT 60.841 55.000 5.98 0.00 40.58 3.21
88 89 0.107654 CCTCGAAGGGGTTCCACATC 60.108 60.000 0.00 0.00 34.83 3.06
89 90 0.107654 CTCGAAGGGGTTCCACATCC 60.108 60.000 0.00 0.00 34.83 3.51
90 91 0.546747 TCGAAGGGGTTCCACATCCT 60.547 55.000 0.00 0.00 34.83 3.24
91 92 0.107654 CGAAGGGGTTCCACATCCTC 60.108 60.000 0.00 0.00 34.83 3.71
92 93 1.290134 GAAGGGGTTCCACATCCTCT 58.710 55.000 0.00 0.00 35.87 3.69
93 94 1.636003 GAAGGGGTTCCACATCCTCTT 59.364 52.381 0.00 0.00 45.92 2.85
94 95 0.995024 AGGGGTTCCACATCCTCTTG 59.005 55.000 0.00 0.00 28.96 3.02
95 96 0.698818 GGGGTTCCACATCCTCTTGT 59.301 55.000 0.00 0.00 0.00 3.16
96 97 1.340114 GGGGTTCCACATCCTCTTGTC 60.340 57.143 0.00 0.00 0.00 3.18
97 98 1.340114 GGGTTCCACATCCTCTTGTCC 60.340 57.143 0.00 0.00 0.00 4.02
98 99 1.351017 GGTTCCACATCCTCTTGTCCA 59.649 52.381 0.00 0.00 0.00 4.02
99 100 2.025887 GGTTCCACATCCTCTTGTCCAT 60.026 50.000 0.00 0.00 0.00 3.41
100 101 3.012518 GTTCCACATCCTCTTGTCCATG 58.987 50.000 0.00 0.00 0.00 3.66
101 102 1.065199 TCCACATCCTCTTGTCCATGC 60.065 52.381 0.00 0.00 0.00 4.06
102 103 1.386533 CACATCCTCTTGTCCATGCC 58.613 55.000 0.00 0.00 0.00 4.40
103 104 0.994247 ACATCCTCTTGTCCATGCCA 59.006 50.000 0.00 0.00 0.00 4.92
104 105 1.340405 ACATCCTCTTGTCCATGCCAC 60.340 52.381 0.00 0.00 0.00 5.01
105 106 1.064906 CATCCTCTTGTCCATGCCACT 60.065 52.381 0.00 0.00 0.00 4.00
106 107 0.615331 TCCTCTTGTCCATGCCACTC 59.385 55.000 0.00 0.00 0.00 3.51
107 108 0.393537 CCTCTTGTCCATGCCACTCC 60.394 60.000 0.00 0.00 0.00 3.85
108 109 0.325933 CTCTTGTCCATGCCACTCCA 59.674 55.000 0.00 0.00 0.00 3.86
109 110 0.994247 TCTTGTCCATGCCACTCCAT 59.006 50.000 0.00 0.00 0.00 3.41
110 111 1.065199 TCTTGTCCATGCCACTCCATC 60.065 52.381 0.00 0.00 0.00 3.51
111 112 0.994247 TTGTCCATGCCACTCCATCT 59.006 50.000 0.00 0.00 0.00 2.90
112 113 0.253894 TGTCCATGCCACTCCATCTG 59.746 55.000 0.00 0.00 0.00 2.90
113 114 0.254178 GTCCATGCCACTCCATCTGT 59.746 55.000 0.00 0.00 0.00 3.41
114 115 0.994247 TCCATGCCACTCCATCTGTT 59.006 50.000 0.00 0.00 0.00 3.16
115 116 1.100510 CCATGCCACTCCATCTGTTG 58.899 55.000 0.00 0.00 0.00 3.33
116 117 1.340308 CCATGCCACTCCATCTGTTGA 60.340 52.381 0.00 0.00 0.00 3.18
117 118 2.439409 CATGCCACTCCATCTGTTGAA 58.561 47.619 0.00 0.00 0.00 2.69
118 119 1.896220 TGCCACTCCATCTGTTGAAC 58.104 50.000 0.00 0.00 0.00 3.18
119 120 1.421268 TGCCACTCCATCTGTTGAACT 59.579 47.619 0.00 0.00 0.00 3.01
120 121 2.158623 TGCCACTCCATCTGTTGAACTT 60.159 45.455 0.00 0.00 0.00 2.66
121 122 2.227388 GCCACTCCATCTGTTGAACTTG 59.773 50.000 0.00 0.00 0.00 3.16
122 123 3.480470 CCACTCCATCTGTTGAACTTGT 58.520 45.455 0.00 0.00 0.00 3.16
123 124 3.499918 CCACTCCATCTGTTGAACTTGTC 59.500 47.826 0.00 0.00 0.00 3.18
124 125 4.384056 CACTCCATCTGTTGAACTTGTCT 58.616 43.478 0.00 0.00 0.00 3.41
125 126 4.212847 CACTCCATCTGTTGAACTTGTCTG 59.787 45.833 0.00 0.00 0.00 3.51
126 127 4.101585 ACTCCATCTGTTGAACTTGTCTGA 59.898 41.667 0.00 0.00 0.00 3.27
127 128 5.034852 TCCATCTGTTGAACTTGTCTGAA 57.965 39.130 0.00 0.00 0.00 3.02
128 129 5.436175 TCCATCTGTTGAACTTGTCTGAAA 58.564 37.500 0.00 0.00 0.00 2.69
129 130 6.064060 TCCATCTGTTGAACTTGTCTGAAAT 58.936 36.000 0.00 0.00 0.00 2.17
130 131 7.223584 TCCATCTGTTGAACTTGTCTGAAATA 58.776 34.615 0.00 0.00 0.00 1.40
131 132 7.884877 TCCATCTGTTGAACTTGTCTGAAATAT 59.115 33.333 0.00 0.00 0.00 1.28
132 133 8.517878 CCATCTGTTGAACTTGTCTGAAATATT 58.482 33.333 0.00 0.00 0.00 1.28
133 134 9.552114 CATCTGTTGAACTTGTCTGAAATATTC 57.448 33.333 0.00 0.00 0.00 1.75
134 135 8.908786 TCTGTTGAACTTGTCTGAAATATTCT 57.091 30.769 0.00 0.00 0.00 2.40
135 136 9.996554 TCTGTTGAACTTGTCTGAAATATTCTA 57.003 29.630 0.00 0.00 0.00 2.10
137 138 9.996554 TGTTGAACTTGTCTGAAATATTCTAGA 57.003 29.630 0.00 0.00 0.00 2.43
161 162 9.793259 AGATAAAAACATTAGTCCAACAAGAGA 57.207 29.630 0.00 0.00 0.00 3.10
166 167 9.520515 AAAACATTAGTCCAACAAGAGATATGT 57.479 29.630 0.00 0.00 0.00 2.29
167 168 9.520515 AAACATTAGTCCAACAAGAGATATGTT 57.479 29.630 0.00 0.00 41.50 2.71
188 189 8.825667 ATGTTGACATTAATTACCAAAACCAC 57.174 30.769 0.00 0.00 31.37 4.16
189 190 7.210873 TGTTGACATTAATTACCAAAACCACC 58.789 34.615 0.00 0.00 0.00 4.61
190 191 6.347859 TGACATTAATTACCAAAACCACCC 57.652 37.500 0.00 0.00 0.00 4.61
191 192 5.839063 TGACATTAATTACCAAAACCACCCA 59.161 36.000 0.00 0.00 0.00 4.51
192 193 6.015010 TGACATTAATTACCAAAACCACCCAG 60.015 38.462 0.00 0.00 0.00 4.45
193 194 5.247337 ACATTAATTACCAAAACCACCCAGG 59.753 40.000 0.00 0.00 45.67 4.45
194 195 2.319025 ATTACCAAAACCACCCAGGG 57.681 50.000 2.85 2.85 43.89 4.45
195 196 1.232909 TTACCAAAACCACCCAGGGA 58.767 50.000 14.54 0.00 43.89 4.20
196 197 0.774908 TACCAAAACCACCCAGGGAG 59.225 55.000 14.54 3.50 43.89 4.30
197 198 1.908299 CCAAAACCACCCAGGGAGC 60.908 63.158 14.54 0.00 43.89 4.70
198 199 1.152567 CAAAACCACCCAGGGAGCA 60.153 57.895 14.54 0.00 43.89 4.26
199 200 1.152546 AAAACCACCCAGGGAGCAC 60.153 57.895 14.54 0.00 43.89 4.40
200 201 1.655114 AAAACCACCCAGGGAGCACT 61.655 55.000 14.54 0.00 43.89 4.40
201 202 1.655114 AAACCACCCAGGGAGCACTT 61.655 55.000 14.54 0.00 43.89 3.16
202 203 2.034687 CCACCCAGGGAGCACTTG 59.965 66.667 14.54 0.00 0.00 3.16
203 204 2.833913 CCACCCAGGGAGCACTTGT 61.834 63.158 14.54 0.00 0.00 3.16
204 205 1.601759 CACCCAGGGAGCACTTGTG 60.602 63.158 14.54 0.00 0.00 3.33
205 206 2.674380 CCCAGGGAGCACTTGTGC 60.674 66.667 16.98 16.98 0.00 4.57
207 208 1.228367 CCAGGGAGCACTTGTGCTT 60.228 57.895 26.08 10.63 46.36 3.91
208 209 0.825010 CCAGGGAGCACTTGTGCTTT 60.825 55.000 26.08 14.02 46.36 3.51
209 210 0.595095 CAGGGAGCACTTGTGCTTTC 59.405 55.000 26.08 20.38 46.36 2.62
210 211 0.183492 AGGGAGCACTTGTGCTTTCA 59.817 50.000 26.08 0.00 46.36 2.69
356 582 2.099263 GCTGCAACAGATCGTCCTAGTA 59.901 50.000 0.00 0.00 32.44 1.82
470 701 1.445942 CCATGCCGTGTACCCTAGG 59.554 63.158 0.06 0.06 0.00 3.02
570 802 2.700371 TCAGAAAGCAAGACAGGTCTGA 59.300 45.455 2.15 0.00 40.36 3.27
610 842 1.150827 TGTCATTGAGCGAGCTTGTG 58.849 50.000 2.14 0.00 0.00 3.33
636 904 4.629200 GTGGATCATGAATATCTCCTTCGC 59.371 45.833 12.41 0.00 0.00 4.70
694 963 6.014669 AGGTAGATCAGACCATTTGATAGCTC 60.015 42.308 16.70 0.00 39.65 4.09
699 968 3.943381 CAGACCATTTGATAGCTCTTGCA 59.057 43.478 0.00 0.00 42.74 4.08
851 1121 4.410555 GGTGAAAAGGATCCTATGGACTCT 59.589 45.833 16.55 0.00 32.98 3.24
1104 1397 2.207590 TCTGATGTGATCGCTGCAATC 58.792 47.619 7.94 0.00 0.00 2.67
1137 1430 1.101331 CTTTCTCAGGATTGGCTGCC 58.899 55.000 12.87 12.87 0.00 4.85
1394 1690 9.490379 GAAGGTTTAAAGAAGTCATTACAGAGA 57.510 33.333 0.00 0.00 0.00 3.10
1396 1692 8.429641 AGGTTTAAAGAAGTCATTACAGAGACA 58.570 33.333 0.00 0.00 37.23 3.41
1398 1694 7.891183 TTAAAGAAGTCATTACAGAGACAGC 57.109 36.000 0.00 0.00 37.23 4.40
1405 1701 3.054875 TCATTACAGAGACAGCCTTGCAT 60.055 43.478 0.00 0.00 0.00 3.96
1410 1706 1.228337 AGACAGCCTTGCATGCACA 60.228 52.632 22.58 11.00 0.00 4.57
1457 1753 2.391616 ACAAGAGCGCATGAGAATGA 57.608 45.000 11.47 0.00 0.00 2.57
1458 1754 2.005451 ACAAGAGCGCATGAGAATGAC 58.995 47.619 11.47 0.00 0.00 3.06
1460 1756 2.391616 AGAGCGCATGAGAATGACAA 57.608 45.000 11.47 0.00 0.00 3.18
1479 1775 7.284919 TGACAACTACAAAGTCTATGTCTCA 57.715 36.000 9.16 0.00 39.86 3.27
1529 1827 1.736586 CGCGAGCCCAAGATCTACT 59.263 57.895 0.00 0.00 0.00 2.57
1532 1830 1.134670 GCGAGCCCAAGATCTACTGTT 60.135 52.381 0.00 0.00 0.00 3.16
1594 1892 2.746904 TCATTGTTGAACATGCTACCGG 59.253 45.455 0.00 0.00 0.00 5.28
1673 1971 2.295602 GGGCGGTTGGGGAGTCTTA 61.296 63.158 0.00 0.00 0.00 2.10
1737 2035 0.461870 GTAGCATGGTCGTGGCATGA 60.462 55.000 5.03 5.03 0.00 3.07
1771 2069 0.817654 CTCATGACCACACCTAGCGA 59.182 55.000 0.00 0.00 0.00 4.93
1782 2080 0.033991 ACCTAGCGAGAGAAGGAGCA 60.034 55.000 0.00 0.00 38.66 4.26
1821 2119 2.519013 GATGGTTTCTGGCTCCTTGTT 58.481 47.619 0.00 0.00 0.00 2.83
1842 2140 4.392921 TGCAAAGTAGACATAGAGAGGC 57.607 45.455 0.00 0.00 0.00 4.70
1874 2172 0.885879 ACGACGTGCCAATCTGTCTA 59.114 50.000 0.00 0.00 0.00 2.59
1880 2178 1.204941 GTGCCAATCTGTCTACGGTCT 59.795 52.381 0.00 0.00 0.00 3.85
1920 2218 5.372373 AGCAAGCCATAGGAAGATCTTTAC 58.628 41.667 9.87 6.22 0.00 2.01
1997 2295 1.680735 CAGAGAAGAGCGCCAGATAGT 59.319 52.381 2.29 0.00 0.00 2.12
2030 2328 3.479866 CGAGTACGCGTCATTTTGAAGAC 60.480 47.826 18.63 3.77 0.00 3.01
2175 2473 7.286087 TCTGGAAATGAAATTCATATCCACCTG 59.714 37.037 9.09 11.28 35.76 4.00
2199 2497 6.979817 TGATCATTCTTTTGTTCAACAAGTGG 59.020 34.615 2.58 0.00 39.53 4.00
2218 2516 2.575735 TGGGGCAGTAGAACATCATTGA 59.424 45.455 0.00 0.00 0.00 2.57
2258 2556 6.478344 TGTTTAAAAGCAAACATGGACATGAC 59.522 34.615 18.38 0.00 42.08 3.06
2294 2592 6.159299 TCATTCAAGCAAGAGATCTCCTAG 57.841 41.667 19.30 10.32 0.00 3.02
2308 2606 8.603304 AGAGATCTCCTAGATAGAACTTACCTC 58.397 40.741 19.30 0.00 34.53 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.998106 AGCTCAAGACTCTACATTTTACTTTTA 57.002 29.630 0.00 0.00 0.00 1.52
11 12 8.910351 AGCTCAAGACTCTACATTTTACTTTT 57.090 30.769 0.00 0.00 0.00 2.27
12 13 8.910351 AAGCTCAAGACTCTACATTTTACTTT 57.090 30.769 0.00 0.00 0.00 2.66
13 14 8.910351 AAAGCTCAAGACTCTACATTTTACTT 57.090 30.769 0.00 0.00 0.00 2.24
14 15 8.778358 CAAAAGCTCAAGACTCTACATTTTACT 58.222 33.333 0.00 0.00 0.00 2.24
15 16 8.774586 TCAAAAGCTCAAGACTCTACATTTTAC 58.225 33.333 0.00 0.00 0.00 2.01
16 17 8.902540 TCAAAAGCTCAAGACTCTACATTTTA 57.097 30.769 0.00 0.00 0.00 1.52
17 18 7.521261 GCTCAAAAGCTCAAGACTCTACATTTT 60.521 37.037 0.00 0.00 45.55 1.82
18 19 6.072783 GCTCAAAAGCTCAAGACTCTACATTT 60.073 38.462 0.00 0.00 45.55 2.32
19 20 5.411053 GCTCAAAAGCTCAAGACTCTACATT 59.589 40.000 0.00 0.00 45.55 2.71
20 21 4.934602 GCTCAAAAGCTCAAGACTCTACAT 59.065 41.667 0.00 0.00 45.55 2.29
21 22 4.310769 GCTCAAAAGCTCAAGACTCTACA 58.689 43.478 0.00 0.00 45.55 2.74
22 23 4.919677 GCTCAAAAGCTCAAGACTCTAC 57.080 45.455 0.00 0.00 45.55 2.59
35 36 2.824341 AGGATTGGCTCAAGCTCAAAAG 59.176 45.455 1.46 0.00 41.70 2.27
36 37 2.821969 GAGGATTGGCTCAAGCTCAAAA 59.178 45.455 1.46 0.00 41.70 2.44
37 38 2.040813 AGAGGATTGGCTCAAGCTCAAA 59.959 45.455 1.46 0.00 41.70 2.69
38 39 1.632409 AGAGGATTGGCTCAAGCTCAA 59.368 47.619 1.46 5.34 41.70 3.02
39 40 1.065636 CAGAGGATTGGCTCAAGCTCA 60.066 52.381 1.46 0.00 41.70 4.26
40 41 1.065564 ACAGAGGATTGGCTCAAGCTC 60.066 52.381 1.46 0.00 41.70 4.09
41 42 0.990374 ACAGAGGATTGGCTCAAGCT 59.010 50.000 1.46 0.00 41.70 3.74
42 43 1.377536 GACAGAGGATTGGCTCAAGC 58.622 55.000 0.00 0.00 41.14 4.01
43 44 1.558756 AGGACAGAGGATTGGCTCAAG 59.441 52.381 0.00 0.00 0.00 3.02
44 45 1.661463 AGGACAGAGGATTGGCTCAA 58.339 50.000 0.00 0.00 0.00 3.02
45 46 1.661463 AAGGACAGAGGATTGGCTCA 58.339 50.000 0.00 0.00 0.00 4.26
46 47 2.484594 GCTAAGGACAGAGGATTGGCTC 60.485 54.545 0.00 0.00 0.00 4.70
47 48 1.488393 GCTAAGGACAGAGGATTGGCT 59.512 52.381 0.00 0.00 0.00 4.75
48 49 1.210478 TGCTAAGGACAGAGGATTGGC 59.790 52.381 0.00 0.00 0.00 4.52
49 50 2.420687 GGTGCTAAGGACAGAGGATTGG 60.421 54.545 0.00 0.00 0.00 3.16
50 51 2.503356 AGGTGCTAAGGACAGAGGATTG 59.497 50.000 0.00 0.00 0.00 2.67
51 52 2.769095 GAGGTGCTAAGGACAGAGGATT 59.231 50.000 0.00 0.00 0.00 3.01
52 53 2.393646 GAGGTGCTAAGGACAGAGGAT 58.606 52.381 0.00 0.00 0.00 3.24
53 54 1.853963 GAGGTGCTAAGGACAGAGGA 58.146 55.000 0.00 0.00 0.00 3.71
54 55 0.457851 CGAGGTGCTAAGGACAGAGG 59.542 60.000 0.00 0.00 0.00 3.69
55 56 1.464734 TCGAGGTGCTAAGGACAGAG 58.535 55.000 0.00 0.00 0.00 3.35
56 57 1.819288 CTTCGAGGTGCTAAGGACAGA 59.181 52.381 0.00 0.00 0.00 3.41
57 58 1.134965 CCTTCGAGGTGCTAAGGACAG 60.135 57.143 0.00 0.00 40.89 3.51
58 59 0.895530 CCTTCGAGGTGCTAAGGACA 59.104 55.000 0.00 0.00 40.89 4.02
59 60 0.175989 CCCTTCGAGGTGCTAAGGAC 59.824 60.000 0.00 0.00 40.89 3.85
60 61 0.976073 CCCCTTCGAGGTGCTAAGGA 60.976 60.000 0.00 0.00 40.89 3.36
61 62 1.265454 ACCCCTTCGAGGTGCTAAGG 61.265 60.000 0.00 0.00 38.76 2.69
62 63 0.613777 AACCCCTTCGAGGTGCTAAG 59.386 55.000 0.00 0.00 37.78 2.18
63 64 0.611714 GAACCCCTTCGAGGTGCTAA 59.388 55.000 0.00 0.00 37.78 3.09
64 65 1.262640 GGAACCCCTTCGAGGTGCTA 61.263 60.000 0.63 0.00 37.78 3.49
65 66 2.593956 GGAACCCCTTCGAGGTGCT 61.594 63.158 0.63 0.00 37.78 4.40
66 67 2.046217 GGAACCCCTTCGAGGTGC 60.046 66.667 0.00 0.00 37.78 5.01
67 68 1.003718 GTGGAACCCCTTCGAGGTG 60.004 63.158 0.00 0.00 37.78 4.00
68 69 0.840722 ATGTGGAACCCCTTCGAGGT 60.841 55.000 0.00 0.00 40.14 3.85
69 70 0.107654 GATGTGGAACCCCTTCGAGG 60.108 60.000 0.00 0.00 34.36 4.63
70 71 0.107654 GGATGTGGAACCCCTTCGAG 60.108 60.000 0.00 0.00 34.36 4.04
71 72 0.546747 AGGATGTGGAACCCCTTCGA 60.547 55.000 0.00 0.00 35.72 3.71
72 73 0.107654 GAGGATGTGGAACCCCTTCG 60.108 60.000 0.00 0.00 38.71 3.79
73 74 1.290134 AGAGGATGTGGAACCCCTTC 58.710 55.000 0.00 0.00 38.71 3.46
74 75 1.355720 CAAGAGGATGTGGAACCCCTT 59.644 52.381 0.00 0.00 38.71 3.95
75 76 0.995024 CAAGAGGATGTGGAACCCCT 59.005 55.000 0.00 0.00 40.84 4.79
76 77 0.698818 ACAAGAGGATGTGGAACCCC 59.301 55.000 0.00 0.00 34.36 4.95
77 78 1.340114 GGACAAGAGGATGTGGAACCC 60.340 57.143 0.00 0.00 34.36 4.11
78 79 1.351017 TGGACAAGAGGATGTGGAACC 59.649 52.381 0.00 0.00 34.36 3.62
79 80 2.859165 TGGACAAGAGGATGTGGAAC 57.141 50.000 0.00 0.00 32.57 3.62
80 81 2.618816 GCATGGACAAGAGGATGTGGAA 60.619 50.000 0.00 0.00 32.57 3.53
81 82 1.065199 GCATGGACAAGAGGATGTGGA 60.065 52.381 0.00 0.00 32.57 4.02
82 83 1.386533 GCATGGACAAGAGGATGTGG 58.613 55.000 0.00 0.00 32.57 4.17
83 84 1.340308 TGGCATGGACAAGAGGATGTG 60.340 52.381 0.00 0.00 32.57 3.21
84 85 0.994247 TGGCATGGACAAGAGGATGT 59.006 50.000 0.00 0.00 35.90 3.06
85 86 1.064906 AGTGGCATGGACAAGAGGATG 60.065 52.381 0.00 0.00 0.00 3.51
86 87 1.211457 GAGTGGCATGGACAAGAGGAT 59.789 52.381 0.00 0.00 0.00 3.24
87 88 0.615331 GAGTGGCATGGACAAGAGGA 59.385 55.000 0.00 0.00 0.00 3.71
88 89 0.393537 GGAGTGGCATGGACAAGAGG 60.394 60.000 0.00 0.00 0.00 3.69
89 90 0.325933 TGGAGTGGCATGGACAAGAG 59.674 55.000 0.00 0.00 0.00 2.85
90 91 0.994247 ATGGAGTGGCATGGACAAGA 59.006 50.000 0.00 0.00 0.00 3.02
91 92 1.064906 AGATGGAGTGGCATGGACAAG 60.065 52.381 0.00 0.00 0.00 3.16
92 93 0.994247 AGATGGAGTGGCATGGACAA 59.006 50.000 0.00 0.00 0.00 3.18
93 94 0.253894 CAGATGGAGTGGCATGGACA 59.746 55.000 0.00 0.00 0.00 4.02
94 95 0.254178 ACAGATGGAGTGGCATGGAC 59.746 55.000 0.00 0.00 0.00 4.02
95 96 0.994247 AACAGATGGAGTGGCATGGA 59.006 50.000 0.00 0.00 0.00 3.41
96 97 1.100510 CAACAGATGGAGTGGCATGG 58.899 55.000 0.00 0.00 0.00 3.66
97 98 2.118313 TCAACAGATGGAGTGGCATG 57.882 50.000 0.00 0.00 0.00 4.06
98 99 2.040813 AGTTCAACAGATGGAGTGGCAT 59.959 45.455 0.00 0.00 0.00 4.40
99 100 1.421268 AGTTCAACAGATGGAGTGGCA 59.579 47.619 0.00 0.00 0.00 4.92
100 101 2.191128 AGTTCAACAGATGGAGTGGC 57.809 50.000 0.00 0.00 0.00 5.01
101 102 3.480470 ACAAGTTCAACAGATGGAGTGG 58.520 45.455 0.00 0.00 0.00 4.00
102 103 4.212847 CAGACAAGTTCAACAGATGGAGTG 59.787 45.833 0.00 0.00 0.00 3.51
103 104 4.101585 TCAGACAAGTTCAACAGATGGAGT 59.898 41.667 0.00 0.00 0.00 3.85
104 105 4.635223 TCAGACAAGTTCAACAGATGGAG 58.365 43.478 0.00 0.00 0.00 3.86
105 106 4.687901 TCAGACAAGTTCAACAGATGGA 57.312 40.909 0.00 0.00 0.00 3.41
106 107 5.756195 TTTCAGACAAGTTCAACAGATGG 57.244 39.130 0.00 0.00 0.00 3.51
107 108 9.552114 GAATATTTCAGACAAGTTCAACAGATG 57.448 33.333 0.00 0.00 0.00 2.90
108 109 9.512588 AGAATATTTCAGACAAGTTCAACAGAT 57.487 29.630 0.00 0.00 0.00 2.90
109 110 8.908786 AGAATATTTCAGACAAGTTCAACAGA 57.091 30.769 0.00 0.00 0.00 3.41
111 112 9.996554 TCTAGAATATTTCAGACAAGTTCAACA 57.003 29.630 0.00 0.00 0.00 3.33
135 136 9.793259 TCTCTTGTTGGACTAATGTTTTTATCT 57.207 29.630 0.00 0.00 0.00 1.98
140 141 9.520515 ACATATCTCTTGTTGGACTAATGTTTT 57.479 29.630 0.00 0.00 0.00 2.43
141 142 9.520515 AACATATCTCTTGTTGGACTAATGTTT 57.479 29.630 0.00 0.00 36.02 2.83
142 143 8.950210 CAACATATCTCTTGTTGGACTAATGTT 58.050 33.333 8.33 0.00 46.46 2.71
143 144 8.498054 CAACATATCTCTTGTTGGACTAATGT 57.502 34.615 8.33 0.00 46.46 2.71
162 163 9.915629 GTGGTTTTGGTAATTAATGTCAACATA 57.084 29.630 0.00 0.00 35.10 2.29
163 164 7.875554 GGTGGTTTTGGTAATTAATGTCAACAT 59.124 33.333 0.00 0.00 38.41 2.71
164 165 7.210873 GGTGGTTTTGGTAATTAATGTCAACA 58.789 34.615 0.00 0.00 0.00 3.33
165 166 6.647481 GGGTGGTTTTGGTAATTAATGTCAAC 59.353 38.462 0.00 0.00 0.00 3.18
166 167 6.326583 TGGGTGGTTTTGGTAATTAATGTCAA 59.673 34.615 0.00 0.00 0.00 3.18
167 168 5.839063 TGGGTGGTTTTGGTAATTAATGTCA 59.161 36.000 0.00 0.00 0.00 3.58
168 169 6.347859 TGGGTGGTTTTGGTAATTAATGTC 57.652 37.500 0.00 0.00 0.00 3.06
169 170 5.247337 CCTGGGTGGTTTTGGTAATTAATGT 59.753 40.000 0.00 0.00 0.00 2.71
170 171 5.337975 CCCTGGGTGGTTTTGGTAATTAATG 60.338 44.000 3.97 0.00 0.00 1.90
171 172 4.780554 CCCTGGGTGGTTTTGGTAATTAAT 59.219 41.667 3.97 0.00 0.00 1.40
172 173 4.140758 TCCCTGGGTGGTTTTGGTAATTAA 60.141 41.667 13.56 0.00 0.00 1.40
173 174 3.401683 TCCCTGGGTGGTTTTGGTAATTA 59.598 43.478 13.56 0.00 0.00 1.40
174 175 2.180308 TCCCTGGGTGGTTTTGGTAATT 59.820 45.455 13.56 0.00 0.00 1.40
175 176 1.790157 TCCCTGGGTGGTTTTGGTAAT 59.210 47.619 13.56 0.00 0.00 1.89
176 177 1.146152 CTCCCTGGGTGGTTTTGGTAA 59.854 52.381 13.56 0.00 0.00 2.85
177 178 0.774908 CTCCCTGGGTGGTTTTGGTA 59.225 55.000 13.56 0.00 0.00 3.25
178 179 1.541672 CTCCCTGGGTGGTTTTGGT 59.458 57.895 13.56 0.00 0.00 3.67
179 180 1.908299 GCTCCCTGGGTGGTTTTGG 60.908 63.158 13.56 0.00 0.00 3.28
180 181 1.152567 TGCTCCCTGGGTGGTTTTG 60.153 57.895 13.56 0.00 0.00 2.44
181 182 1.152546 GTGCTCCCTGGGTGGTTTT 60.153 57.895 13.56 0.00 0.00 2.43
182 183 1.655114 AAGTGCTCCCTGGGTGGTTT 61.655 55.000 13.56 0.00 0.00 3.27
183 184 2.084930 AAGTGCTCCCTGGGTGGTT 61.085 57.895 13.56 0.00 0.00 3.67
184 185 2.450502 AAGTGCTCCCTGGGTGGT 60.451 61.111 13.56 0.00 0.00 4.16
185 186 2.034687 CAAGTGCTCCCTGGGTGG 59.965 66.667 13.56 8.29 0.00 4.61
186 187 1.601759 CACAAGTGCTCCCTGGGTG 60.602 63.158 13.56 11.90 0.00 4.61
187 188 2.839098 CACAAGTGCTCCCTGGGT 59.161 61.111 13.56 0.00 0.00 4.51
197 198 5.121454 GGATAGAGAGTTGAAAGCACAAGTG 59.879 44.000 0.00 0.00 34.18 3.16
198 199 5.241662 GGATAGAGAGTTGAAAGCACAAGT 58.758 41.667 0.00 0.00 36.33 3.16
199 200 4.633565 GGGATAGAGAGTTGAAAGCACAAG 59.366 45.833 0.00 0.00 0.00 3.16
200 201 4.579869 GGGATAGAGAGTTGAAAGCACAA 58.420 43.478 0.00 0.00 0.00 3.33
201 202 3.368427 CGGGATAGAGAGTTGAAAGCACA 60.368 47.826 0.00 0.00 0.00 4.57
202 203 3.190874 CGGGATAGAGAGTTGAAAGCAC 58.809 50.000 0.00 0.00 0.00 4.40
203 204 2.418746 GCGGGATAGAGAGTTGAAAGCA 60.419 50.000 0.00 0.00 0.00 3.91
204 205 2.159028 AGCGGGATAGAGAGTTGAAAGC 60.159 50.000 0.00 0.00 0.00 3.51
205 206 3.810310 AGCGGGATAGAGAGTTGAAAG 57.190 47.619 0.00 0.00 0.00 2.62
206 207 3.383825 GGTAGCGGGATAGAGAGTTGAAA 59.616 47.826 0.00 0.00 0.00 2.69
207 208 2.957006 GGTAGCGGGATAGAGAGTTGAA 59.043 50.000 0.00 0.00 0.00 2.69
208 209 2.092049 TGGTAGCGGGATAGAGAGTTGA 60.092 50.000 0.00 0.00 0.00 3.18
209 210 2.307768 TGGTAGCGGGATAGAGAGTTG 58.692 52.381 0.00 0.00 0.00 3.16
210 211 2.750141 TGGTAGCGGGATAGAGAGTT 57.250 50.000 0.00 0.00 0.00 3.01
356 582 5.423886 CCAAATTGGGTTTATATTTGCCGT 58.576 37.500 3.60 0.00 37.73 5.68
421 650 4.948621 CCATGAAGAGCTCTCCAAAGAATT 59.051 41.667 18.55 0.00 0.00 2.17
422 651 4.525024 CCATGAAGAGCTCTCCAAAGAAT 58.475 43.478 18.55 0.00 0.00 2.40
570 802 1.221781 TCTTCCAACCCCAAACCCAAT 59.778 47.619 0.00 0.00 0.00 3.16
610 842 6.589523 CGAAGGAGATATTCATGATCCACTTC 59.410 42.308 13.49 13.61 35.41 3.01
636 904 3.991773 CACATGTTTCATTTGCAGGAAGG 59.008 43.478 0.00 0.00 0.00 3.46
694 963 3.067180 CACCATAAATACCAGGCTGCAAG 59.933 47.826 9.56 0.00 0.00 4.01
699 968 2.498441 TCCCACCATAAATACCAGGCT 58.502 47.619 0.00 0.00 0.00 4.58
851 1121 1.651737 TACAAAGCCAGCACTAGGGA 58.348 50.000 0.00 0.00 0.00 4.20
1104 1397 4.256920 CTGAGAAAGTACCACCATCTTGG 58.743 47.826 0.00 0.00 45.02 3.61
1137 1430 5.834135 GTGATAACAATCGTCGAAAATAGCG 59.166 40.000 0.00 0.00 0.00 4.26
1398 1694 0.248990 ACGTGTTTGTGCATGCAAGG 60.249 50.000 24.58 14.45 0.00 3.61
1405 1701 2.248135 CCGCCTACGTGTTTGTGCA 61.248 57.895 0.00 0.00 37.70 4.57
1410 1706 0.034337 ATCACACCGCCTACGTGTTT 59.966 50.000 0.00 0.00 37.70 2.83
1457 1753 8.367911 TCAATGAGACATAGACTTTGTAGTTGT 58.632 33.333 0.00 0.00 33.84 3.32
1458 1754 8.763049 TCAATGAGACATAGACTTTGTAGTTG 57.237 34.615 0.00 3.24 33.84 3.16
1460 1756 8.753133 TGATCAATGAGACATAGACTTTGTAGT 58.247 33.333 0.00 0.00 37.31 2.73
1479 1775 2.501492 GCTTGGCCAGCTGATCAAT 58.499 52.632 17.39 0.00 46.27 2.57
1523 1821 6.274157 ACGAGATCAAAGACAACAGTAGAT 57.726 37.500 0.00 0.00 0.00 1.98
1529 1827 3.559655 CACCAACGAGATCAAAGACAACA 59.440 43.478 0.00 0.00 0.00 3.33
1532 1830 3.653344 CTCACCAACGAGATCAAAGACA 58.347 45.455 0.00 0.00 34.79 3.41
1594 1892 3.003897 TGGCGAATCTAAAAACACCACAC 59.996 43.478 0.00 0.00 0.00 3.82
1673 1971 3.359950 GAATGGTTTTCAGCCTCCATCT 58.640 45.455 0.00 0.00 39.39 2.90
1737 2035 1.064906 CATGAGATCTTGGCCTGGTGT 60.065 52.381 3.32 0.00 0.00 4.16
1748 2046 2.697751 GCTAGGTGTGGTCATGAGATCT 59.302 50.000 0.00 0.00 0.00 2.75
1771 2069 0.251386 TCGTCACCTGCTCCTTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
1782 2080 0.393077 CCAACACCTTCTCGTCACCT 59.607 55.000 0.00 0.00 0.00 4.00
1821 2119 3.181486 CGCCTCTCTATGTCTACTTTGCA 60.181 47.826 0.00 0.00 0.00 4.08
1887 2185 1.867595 ATGGCTTGCTTACCAGGGCT 61.868 55.000 0.00 0.00 44.96 5.19
1997 2295 1.660560 GCGTACTCGGCCAAGTCCTA 61.661 60.000 0.00 0.00 37.56 2.94
2175 2473 6.421801 CCCACTTGTTGAACAAAAGAATGATC 59.578 38.462 12.26 0.00 37.69 2.92
2199 2497 6.233434 TGATATCAATGATGTTCTACTGCCC 58.767 40.000 5.91 0.00 0.00 5.36
2258 2556 5.291178 TGCTTGAATGAAAAGTTGACATGG 58.709 37.500 0.00 0.00 0.00 3.66
2275 2573 6.846988 TCTATCTAGGAGATCTCTTGCTTGA 58.153 40.000 21.81 15.95 36.20 3.02
2294 2592 7.266400 CAACTGGTAAGGAGGTAAGTTCTATC 58.734 42.308 0.00 0.00 0.00 2.08
2308 2606 2.039084 ACAAGAGCTCCAACTGGTAAGG 59.961 50.000 10.93 0.00 36.34 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.