Multiple sequence alignment - TraesCS2D01G266100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G266100 chr2D 100.000 4468 0 0 1 4468 324857445 324861912 0.000000e+00 8251.0
1 TraesCS2D01G266100 chr2A 93.683 4021 168 34 4 3975 393345169 393341186 0.000000e+00 5939.0
2 TraesCS2D01G266100 chr2A 96.162 495 16 1 3974 4468 393341128 393340637 0.000000e+00 806.0
3 TraesCS2D01G266100 chr2B 96.257 2565 80 9 1915 4468 393857215 393859774 0.000000e+00 4191.0
4 TraesCS2D01G266100 chr2B 95.113 1371 46 11 550 1916 393855805 393857158 0.000000e+00 2141.0
5 TraesCS2D01G266100 chr6A 96.491 456 13 3 3635 4088 4814533 4814987 0.000000e+00 750.0
6 TraesCS2D01G266100 chr3D 90.562 498 42 3 3972 4468 481515276 481515769 0.000000e+00 654.0
7 TraesCS2D01G266100 chr3B 87.770 556 54 12 3923 4468 642485279 642485830 4.870000e-179 638.0
8 TraesCS2D01G266100 chr3A 87.161 553 62 8 3922 4468 624528430 624528979 1.770000e-173 619.0
9 TraesCS2D01G266100 chr7D 79.310 203 26 12 248 441 175613979 175613784 1.300000e-25 128.0
10 TraesCS2D01G266100 chr1D 87.097 62 4 3 384 442 348029426 348029366 2.880000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G266100 chr2D 324857445 324861912 4467 False 8251.0 8251 100.0000 1 4468 1 chr2D.!!$F1 4467
1 TraesCS2D01G266100 chr2A 393340637 393345169 4532 True 3372.5 5939 94.9225 4 4468 2 chr2A.!!$R1 4464
2 TraesCS2D01G266100 chr2B 393855805 393859774 3969 False 3166.0 4191 95.6850 550 4468 2 chr2B.!!$F1 3918
3 TraesCS2D01G266100 chr3B 642485279 642485830 551 False 638.0 638 87.7700 3923 4468 1 chr3B.!!$F1 545
4 TraesCS2D01G266100 chr3A 624528430 624528979 549 False 619.0 619 87.1610 3922 4468 1 chr3A.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 231 0.179070 GGGGAGCGAAGAGAACCATC 60.179 60.000 0.00 0.00 0.00 3.51 F
852 899 0.605589 CACCGCCCAAGCCATAAAAA 59.394 50.000 0.00 0.00 34.57 1.94 F
1742 1791 0.887387 GCACTGGCGTCCAAACCTTA 60.887 55.000 0.35 0.00 30.80 2.69 F
3119 3232 2.435805 TCTTCTTCCAGAACAGTGCACT 59.564 45.455 15.25 15.25 29.89 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1283 0.175760 TCAGTAATGAGCCGAGGCAC 59.824 55.000 17.18 10.83 44.88 5.01 R
1960 2067 1.398958 GGGAGACTCCTAGCCTGCAG 61.399 65.000 20.97 6.78 36.57 4.41 R
3295 3412 1.670811 CGGTGCCATGGTAATGACTTC 59.329 52.381 14.67 0.00 35.67 3.01 R
4105 4305 1.134401 GGGCTCCTCATCAACATCGAA 60.134 52.381 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.014352 ATTATCGCCCAACGCTCAAC 58.986 50.000 0.00 0.00 43.23 3.18
64 65 3.680786 CAGCGACTGGACGTGGGA 61.681 66.667 0.00 0.00 35.59 4.37
78 79 2.270352 GTGGGAGACACCATTGACAA 57.730 50.000 0.00 0.00 44.49 3.18
166 178 1.403687 GGGAGAGGGGTGGATCGAAG 61.404 65.000 0.00 0.00 0.00 3.79
183 195 3.838317 TCGAAGAATCAAAGAGGGGAAGA 59.162 43.478 0.00 0.00 0.00 2.87
189 201 0.254462 CAAAGAGGGGAAGAGAGGGC 59.746 60.000 0.00 0.00 0.00 5.19
190 202 1.268283 AAAGAGGGGAAGAGAGGGCG 61.268 60.000 0.00 0.00 0.00 6.13
191 203 2.042843 GAGGGGAAGAGAGGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
192 204 1.686110 GAGGGGAAGAGAGGGCGAA 60.686 63.158 0.00 0.00 0.00 4.70
194 206 2.736826 GGGGAAGAGAGGGCGAAGG 61.737 68.421 0.00 0.00 0.00 3.46
195 207 2.736826 GGGAAGAGAGGGCGAAGGG 61.737 68.421 0.00 0.00 0.00 3.95
196 208 2.736826 GGAAGAGAGGGCGAAGGGG 61.737 68.421 0.00 0.00 0.00 4.79
197 209 1.686110 GAAGAGAGGGCGAAGGGGA 60.686 63.158 0.00 0.00 0.00 4.81
198 210 1.229529 AAGAGAGGGCGAAGGGGAA 60.230 57.895 0.00 0.00 0.00 3.97
219 231 0.179070 GGGGAGCGAAGAGAACCATC 60.179 60.000 0.00 0.00 0.00 3.51
269 305 7.924947 ACTATATTCACCTAAAGCCGAAACTAC 59.075 37.037 0.00 0.00 0.00 2.73
329 366 9.328845 TGTAATTGTAGGTCGAGTTTTAAGTTT 57.671 29.630 0.00 0.00 0.00 2.66
439 476 5.773680 TGATCCTACGATCTTACCTAAAGGG 59.226 44.000 0.20 0.00 44.61 3.95
440 477 3.893813 TCCTACGATCTTACCTAAAGGGC 59.106 47.826 0.20 0.00 40.27 5.19
442 479 4.022155 CCTACGATCTTACCTAAAGGGCTC 60.022 50.000 0.20 0.00 40.27 4.70
443 480 2.699321 ACGATCTTACCTAAAGGGCTCC 59.301 50.000 0.20 0.00 40.27 4.70
445 482 3.492829 CGATCTTACCTAAAGGGCTCCAC 60.493 52.174 0.20 0.00 40.27 4.02
454 495 5.016831 CCTAAAGGGCTCCACTTGTAATTT 58.983 41.667 0.00 0.00 0.00 1.82
455 496 5.125578 CCTAAAGGGCTCCACTTGTAATTTC 59.874 44.000 0.00 0.00 0.00 2.17
458 499 2.291605 GGGCTCCACTTGTAATTTCCCT 60.292 50.000 0.00 0.00 0.00 4.20
461 502 4.200092 GCTCCACTTGTAATTTCCCTAGG 58.800 47.826 0.06 0.06 0.00 3.02
523 565 8.807948 TTTTAGTTATCCATTCCCTTTCAGAG 57.192 34.615 0.00 0.00 0.00 3.35
545 587 7.169476 CAGAGTCAGACATCATTACATCATCAC 59.831 40.741 2.66 0.00 0.00 3.06
586 630 1.944234 AATCCAACCGCGCAATTCCC 61.944 55.000 8.75 0.00 0.00 3.97
587 631 2.837031 ATCCAACCGCGCAATTCCCT 62.837 55.000 8.75 0.00 0.00 4.20
588 632 2.485122 CAACCGCGCAATTCCCTC 59.515 61.111 8.75 0.00 0.00 4.30
589 633 2.033448 AACCGCGCAATTCCCTCA 59.967 55.556 8.75 0.00 0.00 3.86
590 634 1.378514 AACCGCGCAATTCCCTCAT 60.379 52.632 8.75 0.00 0.00 2.90
644 689 6.830912 AGCAGCAGTCCATGACTTAATAATA 58.169 36.000 0.00 0.00 41.37 0.98
650 696 7.387948 GCAGTCCATGACTTAATAATATCCGTT 59.612 37.037 0.00 0.00 41.37 4.44
811 858 1.078708 CCCCCGATAAACGCACACT 60.079 57.895 0.00 0.00 41.07 3.55
852 899 0.605589 CACCGCCCAAGCCATAAAAA 59.394 50.000 0.00 0.00 34.57 1.94
1037 1084 2.689034 CTCCACCTCCTCCCCCAC 60.689 72.222 0.00 0.00 0.00 4.61
1218 1265 3.312697 GGAATGCTACCTTGATTCGTTCC 59.687 47.826 0.00 0.00 36.18 3.62
1240 1287 4.440127 CCAAGCCCAATGCGTGCC 62.440 66.667 0.00 0.00 46.55 5.01
1302 1349 3.071602 TCGGATCTTTCCTCCATCAATCC 59.928 47.826 0.00 0.00 40.17 3.01
1306 1353 3.192944 TCTTTCCTCCATCAATCCCACT 58.807 45.455 0.00 0.00 0.00 4.00
1307 1354 3.054139 TCTTTCCTCCATCAATCCCACTG 60.054 47.826 0.00 0.00 0.00 3.66
1349 1396 1.676014 CCGACTTCGATTTTGAGGCCT 60.676 52.381 3.86 3.86 43.02 5.19
1498 1545 3.770040 GGCGGAAATGGGGGCAAC 61.770 66.667 0.00 0.00 0.00 4.17
1579 1626 4.846779 TCACCCTTCATTTGCAACTAAC 57.153 40.909 0.00 0.00 0.00 2.34
1580 1627 3.572255 TCACCCTTCATTTGCAACTAACC 59.428 43.478 0.00 0.00 0.00 2.85
1623 1670 3.881089 GTGCTAACCTACCAACAAACACT 59.119 43.478 0.00 0.00 0.00 3.55
1730 1777 3.146847 ACCACTTTACTTTAGCACTGGC 58.853 45.455 0.00 0.00 41.61 4.85
1742 1791 0.887387 GCACTGGCGTCCAAACCTTA 60.887 55.000 0.35 0.00 30.80 2.69
1960 2067 5.597813 TGCGAGATTTTTCTTCTGAGTTC 57.402 39.130 0.00 0.00 0.00 3.01
2057 2164 8.585471 ATTCAGGTGTGTTATTTCTCATCATT 57.415 30.769 0.00 0.00 0.00 2.57
2084 2191 5.820947 ACGGTCATATCACTTTATTGTTCCC 59.179 40.000 0.00 0.00 0.00 3.97
2278 2385 4.576053 GGCAAGTCCAATGCTTTTTCTTTT 59.424 37.500 0.00 0.00 43.34 2.27
2459 2566 6.367374 TTCTGTTCAGGTGGACATGTATAA 57.633 37.500 0.00 0.00 0.00 0.98
2495 2602 7.974675 AGAACAAAATACCGACATATTCTGTG 58.025 34.615 0.00 0.00 38.54 3.66
2633 2741 7.397892 TCGGAATTTATGACTGGCAAAAATA 57.602 32.000 0.00 0.00 0.00 1.40
2641 2749 5.781210 TGACTGGCAAAAATATTGTGTCA 57.219 34.783 6.54 6.54 0.00 3.58
2888 2997 5.009631 TGGTGAGTATTTGGTTCTTCATGG 58.990 41.667 0.00 0.00 0.00 3.66
2971 3082 2.882761 GGTTGGGCGTAAAGAAGAACTT 59.117 45.455 0.00 0.00 40.98 2.66
3018 3129 4.795469 TCATATGAATGTGAAGCCACCAT 58.205 39.130 1.98 0.00 42.53 3.55
3119 3232 2.435805 TCTTCTTCCAGAACAGTGCACT 59.564 45.455 15.25 15.25 29.89 4.40
3147 3263 5.107133 GCACGTGTATATACTTGTGTCCTT 58.893 41.667 25.36 1.24 35.74 3.36
3148 3264 5.231568 GCACGTGTATATACTTGTGTCCTTC 59.768 44.000 25.36 13.50 35.74 3.46
3149 3265 6.561614 CACGTGTATATACTTGTGTCCTTCT 58.438 40.000 20.66 0.00 31.82 2.85
3150 3266 7.680350 GCACGTGTATATACTTGTGTCCTTCTA 60.680 40.741 25.36 0.24 35.74 2.10
3208 3325 4.689612 TCTTACTTGATCATAGGTGGCC 57.310 45.455 0.00 0.00 0.00 5.36
3311 3428 4.641989 ACATCAAGAAGTCATTACCATGGC 59.358 41.667 13.04 0.00 34.94 4.40
3313 3430 4.009675 TCAAGAAGTCATTACCATGGCAC 58.990 43.478 13.04 0.77 37.49 5.01
3522 3639 8.854117 GCTTAGAATAATGGATGAACTTGGAAT 58.146 33.333 0.00 0.00 0.00 3.01
3570 3700 2.342910 GCTGAATGCTGGTGTTTGAG 57.657 50.000 0.00 0.00 38.95 3.02
3571 3701 1.668047 GCTGAATGCTGGTGTTTGAGC 60.668 52.381 0.00 0.00 38.95 4.26
3572 3702 1.884579 CTGAATGCTGGTGTTTGAGCT 59.115 47.619 0.00 0.00 36.11 4.09
3573 3703 1.610038 TGAATGCTGGTGTTTGAGCTG 59.390 47.619 0.00 0.00 36.11 4.24
3574 3704 1.610522 GAATGCTGGTGTTTGAGCTGT 59.389 47.619 0.00 0.00 36.11 4.40
3575 3705 0.956633 ATGCTGGTGTTTGAGCTGTG 59.043 50.000 0.00 0.00 36.11 3.66
3588 3718 4.734398 TGAGCTGTGTGTTTTCCAAAAT 57.266 36.364 0.00 0.00 0.00 1.82
3641 3771 1.518367 CAGTCCAGGGGCCCTATAAA 58.482 55.000 28.28 8.11 29.64 1.40
3648 3778 3.117131 CCAGGGGCCCTATAAAAGTGAAT 60.117 47.826 28.28 0.00 29.64 2.57
3696 3827 1.546029 GGTGGAATTTGGTTGAGAGCC 59.454 52.381 0.00 0.00 0.00 4.70
3782 3913 2.230992 GCACTTGCCATGTTTACCATCA 59.769 45.455 0.00 0.00 34.31 3.07
3933 4064 0.938637 CTGCGCGTTGCCAAATTTCA 60.939 50.000 8.43 0.00 45.60 2.69
4052 4250 5.991606 TCATTCGGATCAGGCTACTAAATTG 59.008 40.000 0.00 0.00 0.00 2.32
4055 4253 5.741011 TCGGATCAGGCTACTAAATTGTTT 58.259 37.500 0.00 0.00 0.00 2.83
4105 4305 2.173782 TGTGGTGGTTGTGTCTATTGGT 59.826 45.455 0.00 0.00 0.00 3.67
4113 4313 4.454504 GGTTGTGTCTATTGGTTCGATGTT 59.545 41.667 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.095600 TTCAGGTGACGATCTCTCCG 58.904 55.000 0.00 0.00 37.58 4.63
1 2 2.035321 GGATTCAGGTGACGATCTCTCC 59.965 54.545 0.00 0.00 33.26 3.71
2 3 2.955660 AGGATTCAGGTGACGATCTCTC 59.044 50.000 0.00 0.00 0.00 3.20
10 11 2.969628 ATGTCGAGGATTCAGGTGAC 57.030 50.000 0.00 0.00 0.00 3.67
47 48 3.633094 CTCCCACGTCCAGTCGCTG 62.633 68.421 0.00 0.52 0.00 5.18
52 53 2.207924 GGTGTCTCCCACGTCCAGT 61.208 63.158 0.00 0.00 45.52 4.00
64 65 0.850100 TGGGGTTGTCAATGGTGTCT 59.150 50.000 0.00 0.00 0.00 3.41
72 73 4.589675 GGGCGGTGGGGTTGTCAA 62.590 66.667 0.00 0.00 0.00 3.18
135 140 3.672295 CTCTCCCTTCGCCACAGCC 62.672 68.421 0.00 0.00 34.57 4.85
139 144 3.787001 CCCCTCTCCCTTCGCCAC 61.787 72.222 0.00 0.00 0.00 5.01
142 147 3.787001 CCACCCCTCTCCCTTCGC 61.787 72.222 0.00 0.00 0.00 4.70
166 178 3.118075 CCCTCTCTTCCCCTCTTTGATTC 60.118 52.174 0.00 0.00 0.00 2.52
183 195 2.689034 CCTTCCCCTTCGCCCTCT 60.689 66.667 0.00 0.00 0.00 3.69
189 201 3.798511 GCTCCCCCTTCCCCTTCG 61.799 72.222 0.00 0.00 0.00 3.79
190 202 3.798511 CGCTCCCCCTTCCCCTTC 61.799 72.222 0.00 0.00 0.00 3.46
191 203 3.883822 TTCGCTCCCCCTTCCCCTT 62.884 63.158 0.00 0.00 0.00 3.95
192 204 4.348495 TTCGCTCCCCCTTCCCCT 62.348 66.667 0.00 0.00 0.00 4.79
194 206 2.687566 TCTTCGCTCCCCCTTCCC 60.688 66.667 0.00 0.00 0.00 3.97
195 207 1.265454 TTCTCTTCGCTCCCCCTTCC 61.265 60.000 0.00 0.00 0.00 3.46
196 208 0.108089 GTTCTCTTCGCTCCCCCTTC 60.108 60.000 0.00 0.00 0.00 3.46
197 209 1.554583 GGTTCTCTTCGCTCCCCCTT 61.555 60.000 0.00 0.00 0.00 3.95
198 210 1.990614 GGTTCTCTTCGCTCCCCCT 60.991 63.158 0.00 0.00 0.00 4.79
302 339 8.891671 ACTTAAAACTCGACCTACAATTACAA 57.108 30.769 0.00 0.00 0.00 2.41
337 374 7.378966 ACCTATGATGTATGTCTACATTTCCG 58.621 38.462 0.12 0.00 46.28 4.30
439 476 4.200092 CCTAGGGAAATTACAAGTGGAGC 58.800 47.826 0.00 0.00 0.00 4.70
440 477 5.045869 TCACCTAGGGAAATTACAAGTGGAG 60.046 44.000 14.81 0.00 0.00 3.86
442 479 5.174037 TCACCTAGGGAAATTACAAGTGG 57.826 43.478 14.81 0.00 0.00 4.00
443 480 8.801882 TTAATCACCTAGGGAAATTACAAGTG 57.198 34.615 14.81 0.00 0.00 3.16
454 495 7.743116 TGACTTTGTATTAATCACCTAGGGA 57.257 36.000 14.81 8.09 0.00 4.20
455 496 7.445402 CCATGACTTTGTATTAATCACCTAGGG 59.555 40.741 14.81 2.03 0.00 3.53
461 502 9.769093 GTGTTACCATGACTTTGTATTAATCAC 57.231 33.333 0.00 0.00 0.00 3.06
494 535 9.374711 TGAAAGGGAATGGATAACTAAAAGTTT 57.625 29.630 0.00 0.00 39.51 2.66
495 536 8.950007 TGAAAGGGAATGGATAACTAAAAGTT 57.050 30.769 0.00 0.00 41.97 2.66
496 537 8.390921 TCTGAAAGGGAATGGATAACTAAAAGT 58.609 33.333 0.00 0.00 0.00 2.66
497 538 8.807948 TCTGAAAGGGAATGGATAACTAAAAG 57.192 34.615 0.00 0.00 0.00 2.27
503 545 5.745227 TGACTCTGAAAGGGAATGGATAAC 58.255 41.667 0.00 0.00 35.24 1.89
523 565 7.725818 ATGTGATGATGTAATGATGTCTGAC 57.274 36.000 0.00 0.00 0.00 3.51
545 587 7.121759 GGATTGGGGATATGAGTTGTGAATATG 59.878 40.741 0.00 0.00 0.00 1.78
586 630 3.388308 GTTGATGACGAGGATGGATGAG 58.612 50.000 0.00 0.00 0.00 2.90
587 631 3.459232 GTTGATGACGAGGATGGATGA 57.541 47.619 0.00 0.00 0.00 2.92
669 715 1.137872 CGGCTACTTCCATTCTCAGCT 59.862 52.381 0.00 0.00 0.00 4.24
745 791 2.496817 GATCCTTCGCCGTCAGCT 59.503 61.111 0.00 0.00 40.39 4.24
759 805 1.003839 TGAACAGTGGCACGGGATC 60.004 57.895 21.47 17.95 0.00 3.36
760 806 1.302511 GTGAACAGTGGCACGGGAT 60.303 57.895 21.47 10.12 0.00 3.85
811 858 2.045731 GGCCGTCGGATTTTGGGA 60.046 61.111 17.49 0.00 0.00 4.37
852 899 2.509964 GTGAGGGGTCAGGATTGGTATT 59.490 50.000 0.00 0.00 0.00 1.89
1218 1265 2.761213 GCATTGGGCTTGGAGGGG 60.761 66.667 0.00 0.00 40.25 4.79
1236 1283 0.175760 TCAGTAATGAGCCGAGGCAC 59.824 55.000 17.18 10.83 44.88 5.01
1333 1380 5.289434 GCATAAAAAGGCCTCAAAATCGAAG 59.711 40.000 5.23 0.00 0.00 3.79
1498 1545 9.243637 CCCCACATTTAATTAACATTGATTACG 57.756 33.333 0.00 0.00 0.00 3.18
1536 1583 7.255942 GGTGAAATCAAAAGAAGGAATCAGGAA 60.256 37.037 0.00 0.00 0.00 3.36
1730 1777 8.973835 TTAATTAGCAAAATAAGGTTTGGACG 57.026 30.769 0.34 0.00 38.64 4.79
1960 2067 1.398958 GGGAGACTCCTAGCCTGCAG 61.399 65.000 20.97 6.78 36.57 4.41
2057 2164 5.182487 ACAATAAAGTGATATGACCGTGCA 58.818 37.500 0.00 0.00 0.00 4.57
2467 2574 7.910162 CAGAATATGTCGGTATTTTGTTCTTGG 59.090 37.037 0.00 0.00 0.00 3.61
2495 2602 8.719648 CAAAGCTATATGAAATGACAGATCCTC 58.280 37.037 0.00 0.00 0.00 3.71
2561 2668 5.692814 AGATTTCATGTTCAATGTGTGACG 58.307 37.500 0.00 0.00 35.39 4.35
2633 2741 7.756395 AGACAAAATGAGAAGATGACACAAT 57.244 32.000 0.00 0.00 0.00 2.71
2971 3082 2.969262 TGTCCACACAGGTCTACATCAA 59.031 45.455 0.00 0.00 39.02 2.57
3018 3129 7.276218 GTGCAGTAAACATTAGGTTGATACGTA 59.724 37.037 0.00 0.00 40.35 3.57
3084 3195 7.126061 TCTGGAAGAAGATCTGTAGACCATAA 58.874 38.462 0.00 0.00 42.31 1.90
3119 3232 4.623595 CACAAGTATATACACGTGCACACA 59.376 41.667 17.22 0.00 31.98 3.72
3293 3410 3.356290 GGTGCCATGGTAATGACTTCTT 58.644 45.455 14.67 0.00 35.67 2.52
3295 3412 1.670811 CGGTGCCATGGTAATGACTTC 59.329 52.381 14.67 0.00 35.67 3.01
3311 3428 8.889717 AGTAATTCTACAAAAATACCATCGGTG 58.110 33.333 0.00 0.00 36.19 4.94
3313 3430 9.931210 GAAGTAATTCTACAAAAATACCATCGG 57.069 33.333 0.00 0.00 0.00 4.18
3522 3639 5.163258 ACCAGACATGTAAAATTTTGGGCAA 60.163 36.000 13.76 0.00 0.00 4.52
3563 3693 2.822561 TGGAAAACACACAGCTCAAACA 59.177 40.909 0.00 0.00 0.00 2.83
3564 3694 3.502191 TGGAAAACACACAGCTCAAAC 57.498 42.857 0.00 0.00 0.00 2.93
3565 3695 4.527509 TTTGGAAAACACACAGCTCAAA 57.472 36.364 0.00 0.00 0.00 2.69
3566 3696 4.527509 TTTTGGAAAACACACAGCTCAA 57.472 36.364 0.00 0.00 0.00 3.02
3567 3697 4.159321 TGATTTTGGAAAACACACAGCTCA 59.841 37.500 0.00 0.00 0.00 4.26
3568 3698 4.681744 TGATTTTGGAAAACACACAGCTC 58.318 39.130 0.00 0.00 0.00 4.09
3569 3699 4.734398 TGATTTTGGAAAACACACAGCT 57.266 36.364 0.00 0.00 0.00 4.24
3570 3700 4.148696 CGATGATTTTGGAAAACACACAGC 59.851 41.667 0.00 0.00 0.00 4.40
3571 3701 5.518812 TCGATGATTTTGGAAAACACACAG 58.481 37.500 0.00 0.00 0.00 3.66
3572 3702 5.506686 TCGATGATTTTGGAAAACACACA 57.493 34.783 0.00 0.00 0.00 3.72
3573 3703 5.977129 ACTTCGATGATTTTGGAAAACACAC 59.023 36.000 5.16 0.00 0.00 3.82
3574 3704 5.976534 CACTTCGATGATTTTGGAAAACACA 59.023 36.000 5.16 0.00 0.00 3.72
3575 3705 5.977129 ACACTTCGATGATTTTGGAAAACAC 59.023 36.000 5.16 0.00 0.00 3.32
3641 3771 4.137543 AGCAGAAGACGGAAAATTCACTT 58.862 39.130 0.00 0.00 0.00 3.16
3648 3778 3.312421 CAGAACAAGCAGAAGACGGAAAA 59.688 43.478 0.00 0.00 0.00 2.29
3696 3827 6.512297 GGATTTTCTCCTCTACTAGAGCAAG 58.488 44.000 7.50 7.28 40.98 4.01
3782 3913 1.826385 GGCATAACCAGCAACACTCT 58.174 50.000 0.00 0.00 38.86 3.24
3933 4064 8.031277 GCCAAGTATTTCTCACATTCTTGAAAT 58.969 33.333 0.00 0.00 40.69 2.17
4052 4250 4.933400 AGGCATCAGCAAATGATTTCAAAC 59.067 37.500 2.77 0.00 46.97 2.93
4055 4253 3.677700 GCAGGCATCAGCAAATGATTTCA 60.678 43.478 2.77 0.00 46.97 2.69
4082 4280 3.476552 CAATAGACACAACCACCACAGT 58.523 45.455 0.00 0.00 0.00 3.55
4105 4305 1.134401 GGGCTCCTCATCAACATCGAA 60.134 52.381 0.00 0.00 0.00 3.71
4113 4313 2.068821 GCTCAGGGGCTCCTCATCA 61.069 63.158 0.00 0.00 42.67 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.