Multiple sequence alignment - TraesCS2D01G265700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G265700 chr2D 100.000 5516 0 0 1 5516 324349818 324344303 0.000000e+00 10187.0
1 TraesCS2D01G265700 chr2D 97.691 433 4 1 1 427 478112646 478112214 0.000000e+00 739.0
2 TraesCS2D01G265700 chr2D 93.349 436 18 4 1 426 408024638 408024204 7.800000e-178 634.0
3 TraesCS2D01G265700 chr2D 97.619 84 2 0 2148 2231 247393438 247393521 1.600000e-30 145.0
4 TraesCS2D01G265700 chr2D 88.660 97 3 1 1967 2063 247393351 247393439 1.620000e-20 111.0
5 TraesCS2D01G265700 chr2B 96.234 3080 67 23 1684 4736 393187979 393184922 0.000000e+00 5000.0
6 TraesCS2D01G265700 chr2B 88.880 1295 41 29 434 1693 393189255 393188029 0.000000e+00 1498.0
7 TraesCS2D01G265700 chr2A 96.290 3019 62 16 1739 4739 394380966 394383952 0.000000e+00 4909.0
8 TraesCS2D01G265700 chr2A 86.797 1333 69 37 427 1693 394379582 394380873 0.000000e+00 1387.0
9 TraesCS2D01G265700 chr2A 93.272 327 18 3 5049 5372 394385350 394385675 3.870000e-131 479.0
10 TraesCS2D01G265700 chr2A 93.137 306 21 0 1967 2272 421243865 421243560 3.030000e-122 449.0
11 TraesCS2D01G265700 chr7D 95.400 413 12 3 1 409 530666569 530666160 0.000000e+00 651.0
12 TraesCS2D01G265700 chr7D 100.000 31 0 0 1519 1549 186418604 186418634 2.150000e-04 58.4
13 TraesCS2D01G265700 chr7A 94.915 413 17 3 1 409 671308357 671307945 1.300000e-180 643.0
14 TraesCS2D01G265700 chr7A 93.287 432 20 2 4 426 516137419 516136988 3.630000e-176 628.0
15 TraesCS2D01G265700 chr7A 93.103 435 21 2 1 426 657638404 657638838 3.630000e-176 628.0
16 TraesCS2D01G265700 chr7A 92.938 439 18 8 1 429 720918524 720918959 1.300000e-175 627.0
17 TraesCS2D01G265700 chr1A 93.578 436 19 2 1 427 64854383 64854818 4.660000e-180 641.0
18 TraesCS2D01G265700 chr1A 100.000 30 0 0 1520 1549 593295937 593295908 7.720000e-04 56.5
19 TraesCS2D01G265700 chr5A 93.119 436 20 5 1 427 83285626 83286060 1.010000e-176 630.0
20 TraesCS2D01G265700 chr5A 92.500 240 18 0 2190 2429 654117902 654117663 1.470000e-90 344.0
21 TraesCS2D01G265700 chr1B 92.982 228 16 0 2202 2429 144928901 144928674 3.180000e-87 333.0
22 TraesCS2D01G265700 chr5D 92.823 209 14 1 2231 2439 444893725 444893518 8.980000e-78 302.0
23 TraesCS2D01G265700 chr5D 92.308 169 8 2 1967 2135 420026220 420026057 9.240000e-58 235.0
24 TraesCS2D01G265700 chr5D 90.286 175 5 6 1968 2142 444893883 444893721 9.300000e-53 219.0
25 TraesCS2D01G265700 chr5D 96.721 122 4 0 2308 2429 420026059 420025938 2.610000e-48 204.0
26 TraesCS2D01G265700 chr5D 100.000 33 0 0 1967 1999 233740470 233740438 1.660000e-05 62.1
27 TraesCS2D01G265700 chr5D 100.000 31 0 0 1519 1549 351393426 351393396 2.150000e-04 58.4
28 TraesCS2D01G265700 chr5B 82.759 290 40 5 3174 3455 629935490 629935203 3.300000e-62 250.0
29 TraesCS2D01G265700 chr7B 76.296 405 70 21 428 818 383004646 383005038 5.640000e-45 193.0
30 TraesCS2D01G265700 chr7B 100.000 32 0 0 1968 1999 504203074 504203105 5.970000e-05 60.2
31 TraesCS2D01G265700 chr6B 85.714 105 13 2 4046 4149 44103471 44103574 5.840000e-20 110.0
32 TraesCS2D01G265700 chr6A 85.714 105 13 2 4046 4149 25634681 25634784 5.840000e-20 110.0
33 TraesCS2D01G265700 chr6A 100.000 30 0 0 1520 1549 545334263 545334234 7.720000e-04 56.5
34 TraesCS2D01G265700 chrUn 75.847 236 41 13 4046 4273 94821303 94821530 7.560000e-19 106.0
35 TraesCS2D01G265700 chr6D 94.444 36 2 0 1520 1555 1379658 1379623 7.720000e-04 56.5
36 TraesCS2D01G265700 chr6D 100.000 30 0 0 1520 1549 299254598 299254569 7.720000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G265700 chr2D 324344303 324349818 5515 True 10187.000000 10187 100.000000 1 5516 1 chr2D.!!$R1 5515
1 TraesCS2D01G265700 chr2B 393184922 393189255 4333 True 3249.000000 5000 92.557000 434 4736 2 chr2B.!!$R1 4302
2 TraesCS2D01G265700 chr2A 394379582 394385675 6093 False 2258.333333 4909 92.119667 427 5372 3 chr2A.!!$F1 4945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.031585 GCCACGGATATGTCTGCGTA 59.968 55.0 0.00 0.0 33.84 4.42 F
413 414 0.249868 TCACGTGCAAGTTCTCCTGG 60.250 55.0 11.67 0.0 0.00 4.45 F
414 415 0.532862 CACGTGCAAGTTCTCCTGGT 60.533 55.0 0.82 0.0 0.00 4.00 F
416 417 0.532862 CGTGCAAGTTCTCCTGGTGT 60.533 55.0 0.00 0.0 0.00 4.16 F
527 528 1.023513 ACCGCATCTCTGCTTGCTTC 61.024 55.0 0.00 0.0 46.65 3.86 F
1348 1416 1.211743 TTGCTGCGATCAGATTAGCG 58.788 50.0 0.00 0.0 42.95 4.26 F
1779 1937 0.381801 CTGACCTGTGTTGGTGTTGC 59.618 55.0 0.00 0.0 41.00 4.17 F
2431 2601 1.191489 TCACCTCCAGATTCGCCACA 61.191 55.0 0.00 0.0 0.00 4.17 F
3516 3689 0.826715 TCCCAAGAGATGAAGCTCCG 59.173 55.0 0.00 0.0 35.49 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 1723 0.402504 TGGCACGGAACAGGGTATTT 59.597 50.000 0.0 0.0 0.00 1.40 R
1728 1872 0.955428 TGCGATCCTCACAAAGTGGC 60.955 55.000 0.0 0.0 33.87 5.01 R
1735 1879 0.969149 ACTCAACTGCGATCCTCACA 59.031 50.000 0.0 0.0 0.00 3.58 R
1743 1887 1.136110 TCAGTGTCAACTCAACTGCGA 59.864 47.619 0.0 0.0 32.98 5.10 R
1744 1888 1.258982 GTCAGTGTCAACTCAACTGCG 59.741 52.381 0.0 0.0 32.98 5.18 R
2644 2814 0.957395 AGTTGGCGAGCATCACCTTG 60.957 55.000 0.0 0.0 38.41 3.61 R
3514 3687 4.199310 ACCACCATTGATTTATCAGTCGG 58.801 43.478 0.0 0.0 38.19 4.79 R
4098 4271 2.049433 CCGTTCTCCGACAGCGTT 60.049 61.111 0.0 0.0 39.56 4.84 R
5421 6711 0.106149 AACAGTCCTTCGGTGTGTCC 59.894 55.000 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.772973 AAAATTATTCGTGCTACCTATACATGA 57.227 29.630 0.00 0.00 0.00 3.07
45 46 9.772973 AAATTATTCGTGCTACCTATACATGAA 57.227 29.630 0.00 0.00 41.94 2.57
46 47 9.944376 AATTATTCGTGCTACCTATACATGAAT 57.056 29.630 12.67 12.67 46.46 2.57
47 48 8.757164 TTATTCGTGCTACCTATACATGAATG 57.243 34.615 16.12 0.00 45.17 2.67
48 49 5.134202 TCGTGCTACCTATACATGAATGG 57.866 43.478 0.00 0.00 0.00 3.16
49 50 4.587262 TCGTGCTACCTATACATGAATGGT 59.413 41.667 0.00 4.75 35.05 3.55
50 51 4.923871 CGTGCTACCTATACATGAATGGTC 59.076 45.833 0.00 0.00 32.74 4.02
51 52 5.508994 CGTGCTACCTATACATGAATGGTCA 60.509 44.000 0.00 0.00 38.41 4.02
52 53 6.467677 GTGCTACCTATACATGAATGGTCAT 58.532 40.000 0.00 0.00 45.80 3.06
53 54 6.936900 GTGCTACCTATACATGAATGGTCATT 59.063 38.462 0.00 0.00 42.03 2.57
54 55 6.936335 TGCTACCTATACATGAATGGTCATTG 59.064 38.462 0.00 0.00 42.03 2.82
55 56 6.372659 GCTACCTATACATGAATGGTCATTGG 59.627 42.308 0.00 0.00 42.03 3.16
56 57 6.266131 ACCTATACATGAATGGTCATTGGT 57.734 37.500 0.00 0.00 42.03 3.67
57 58 6.672593 ACCTATACATGAATGGTCATTGGTT 58.327 36.000 0.00 0.00 42.03 3.67
58 59 7.125391 ACCTATACATGAATGGTCATTGGTTT 58.875 34.615 0.00 0.00 42.03 3.27
59 60 7.068593 ACCTATACATGAATGGTCATTGGTTTG 59.931 37.037 0.00 0.00 42.03 2.93
60 61 4.540359 ACATGAATGGTCATTGGTTTGG 57.460 40.909 0.00 0.00 42.03 3.28
61 62 3.903090 ACATGAATGGTCATTGGTTTGGT 59.097 39.130 0.00 0.00 42.03 3.67
62 63 4.247258 CATGAATGGTCATTGGTTTGGTG 58.753 43.478 0.43 0.00 42.03 4.17
63 64 2.632028 TGAATGGTCATTGGTTTGGTGG 59.368 45.455 0.43 0.00 0.00 4.61
64 65 2.397044 ATGGTCATTGGTTTGGTGGT 57.603 45.000 0.00 0.00 0.00 4.16
65 66 2.166907 TGGTCATTGGTTTGGTGGTT 57.833 45.000 0.00 0.00 0.00 3.67
66 67 1.759445 TGGTCATTGGTTTGGTGGTTG 59.241 47.619 0.00 0.00 0.00 3.77
67 68 1.760029 GGTCATTGGTTTGGTGGTTGT 59.240 47.619 0.00 0.00 0.00 3.32
68 69 2.169561 GGTCATTGGTTTGGTGGTTGTT 59.830 45.455 0.00 0.00 0.00 2.83
69 70 3.385111 GGTCATTGGTTTGGTGGTTGTTA 59.615 43.478 0.00 0.00 0.00 2.41
70 71 4.141914 GGTCATTGGTTTGGTGGTTGTTAA 60.142 41.667 0.00 0.00 0.00 2.01
71 72 4.806775 GTCATTGGTTTGGTGGTTGTTAAC 59.193 41.667 0.00 0.00 0.00 2.01
85 86 4.756502 GTTGTTAACCTGAGCCTAGTAGG 58.243 47.826 12.27 12.27 38.80 3.18
86 87 3.371965 TGTTAACCTGAGCCTAGTAGGG 58.628 50.000 18.13 3.20 35.37 3.53
87 88 2.699321 GTTAACCTGAGCCTAGTAGGGG 59.301 54.545 18.13 12.33 35.37 4.79
94 95 3.534941 CCTAGTAGGGGCACGTCC 58.465 66.667 8.50 0.00 0.00 4.79
105 106 2.460757 GGCACGTCCCTAGTTTGTAA 57.539 50.000 0.00 0.00 0.00 2.41
106 107 2.071540 GGCACGTCCCTAGTTTGTAAC 58.928 52.381 0.00 0.00 0.00 2.50
107 108 2.071540 GCACGTCCCTAGTTTGTAACC 58.928 52.381 0.00 0.00 0.00 2.85
108 109 2.331194 CACGTCCCTAGTTTGTAACCG 58.669 52.381 0.00 0.00 0.00 4.44
109 110 2.030007 CACGTCCCTAGTTTGTAACCGA 60.030 50.000 0.00 0.00 0.00 4.69
110 111 2.627699 ACGTCCCTAGTTTGTAACCGAA 59.372 45.455 0.00 0.00 0.00 4.30
111 112 2.989166 CGTCCCTAGTTTGTAACCGAAC 59.011 50.000 0.00 0.00 35.51 3.95
112 113 3.329386 GTCCCTAGTTTGTAACCGAACC 58.671 50.000 0.00 0.00 35.84 3.62
113 114 2.302733 TCCCTAGTTTGTAACCGAACCC 59.697 50.000 0.00 0.00 35.84 4.11
114 115 2.616256 CCCTAGTTTGTAACCGAACCCC 60.616 54.545 0.00 0.00 35.84 4.95
115 116 2.303890 CCTAGTTTGTAACCGAACCCCT 59.696 50.000 0.00 0.00 35.84 4.79
116 117 3.244665 CCTAGTTTGTAACCGAACCCCTT 60.245 47.826 0.00 0.00 35.84 3.95
117 118 2.578786 AGTTTGTAACCGAACCCCTTG 58.421 47.619 0.00 0.00 35.84 3.61
118 119 2.092267 AGTTTGTAACCGAACCCCTTGT 60.092 45.455 0.00 0.00 35.84 3.16
119 120 2.689471 GTTTGTAACCGAACCCCTTGTT 59.311 45.455 0.00 0.00 40.81 2.83
120 121 2.732844 TGTAACCGAACCCCTTGTTT 57.267 45.000 0.00 0.00 37.29 2.83
121 122 3.015675 TGTAACCGAACCCCTTGTTTT 57.984 42.857 0.00 0.00 37.29 2.43
122 123 3.363627 TGTAACCGAACCCCTTGTTTTT 58.636 40.909 0.00 0.00 37.29 1.94
123 124 3.380954 TGTAACCGAACCCCTTGTTTTTC 59.619 43.478 0.00 0.00 37.29 2.29
124 125 1.405872 ACCGAACCCCTTGTTTTTCC 58.594 50.000 0.00 0.00 37.29 3.13
125 126 1.342175 ACCGAACCCCTTGTTTTTCCA 60.342 47.619 0.00 0.00 37.29 3.53
126 127 1.967779 CCGAACCCCTTGTTTTTCCAT 59.032 47.619 0.00 0.00 37.29 3.41
127 128 2.367241 CCGAACCCCTTGTTTTTCCATT 59.633 45.455 0.00 0.00 37.29 3.16
128 129 3.181459 CCGAACCCCTTGTTTTTCCATTT 60.181 43.478 0.00 0.00 37.29 2.32
129 130 4.447290 CGAACCCCTTGTTTTTCCATTTT 58.553 39.130 0.00 0.00 37.29 1.82
130 131 5.453480 CCGAACCCCTTGTTTTTCCATTTTA 60.453 40.000 0.00 0.00 37.29 1.52
131 132 6.227522 CGAACCCCTTGTTTTTCCATTTTAT 58.772 36.000 0.00 0.00 37.29 1.40
132 133 6.708502 CGAACCCCTTGTTTTTCCATTTTATT 59.291 34.615 0.00 0.00 37.29 1.40
133 134 7.227711 CGAACCCCTTGTTTTTCCATTTTATTT 59.772 33.333 0.00 0.00 37.29 1.40
134 135 8.830915 AACCCCTTGTTTTTCCATTTTATTTT 57.169 26.923 0.00 0.00 31.47 1.82
135 136 9.922477 AACCCCTTGTTTTTCCATTTTATTTTA 57.078 25.926 0.00 0.00 31.47 1.52
136 137 9.567776 ACCCCTTGTTTTTCCATTTTATTTTAG 57.432 29.630 0.00 0.00 0.00 1.85
137 138 9.008965 CCCCTTGTTTTTCCATTTTATTTTAGG 57.991 33.333 0.00 0.00 0.00 2.69
138 139 9.008965 CCCTTGTTTTTCCATTTTATTTTAGGG 57.991 33.333 0.00 0.00 0.00 3.53
139 140 9.008965 CCTTGTTTTTCCATTTTATTTTAGGGG 57.991 33.333 0.00 0.00 0.00 4.79
140 141 7.987750 TGTTTTTCCATTTTATTTTAGGGGC 57.012 32.000 0.00 0.00 0.00 5.80
141 142 7.750655 TGTTTTTCCATTTTATTTTAGGGGCT 58.249 30.769 0.00 0.00 0.00 5.19
142 143 8.221251 TGTTTTTCCATTTTATTTTAGGGGCTT 58.779 29.630 0.00 0.00 0.00 4.35
143 144 9.073475 GTTTTTCCATTTTATTTTAGGGGCTTT 57.927 29.630 0.00 0.00 0.00 3.51
148 149 8.852135 TCCATTTTATTTTAGGGGCTTTATACG 58.148 33.333 0.00 0.00 0.00 3.06
149 150 8.635328 CCATTTTATTTTAGGGGCTTTATACGT 58.365 33.333 0.00 0.00 0.00 3.57
243 244 4.744136 AAACATGCAGATCTATCATGCG 57.256 40.909 25.29 12.04 42.92 4.73
244 245 3.397849 ACATGCAGATCTATCATGCGT 57.602 42.857 25.29 12.87 42.92 5.24
245 246 3.324117 ACATGCAGATCTATCATGCGTC 58.676 45.455 25.29 1.28 42.92 5.19
246 247 2.056094 TGCAGATCTATCATGCGTCG 57.944 50.000 0.00 0.00 42.92 5.12
247 248 0.712775 GCAGATCTATCATGCGTCGC 59.287 55.000 11.10 11.10 0.00 5.19
248 249 0.980525 CAGATCTATCATGCGTCGCG 59.019 55.000 13.38 0.00 0.00 5.87
249 250 0.109551 AGATCTATCATGCGTCGCGG 60.110 55.000 13.38 7.57 0.00 6.46
250 251 1.073216 GATCTATCATGCGTCGCGGG 61.073 60.000 13.38 7.18 0.00 6.13
251 252 3.406361 CTATCATGCGTCGCGGGC 61.406 66.667 13.38 11.51 0.00 6.13
252 253 3.848347 CTATCATGCGTCGCGGGCT 62.848 63.158 20.55 1.10 0.00 5.19
253 254 3.439513 TATCATGCGTCGCGGGCTT 62.440 57.895 20.55 13.39 0.00 4.35
254 255 2.077821 TATCATGCGTCGCGGGCTTA 62.078 55.000 20.55 9.02 0.00 3.09
255 256 3.925238 CATGCGTCGCGGGCTTAC 61.925 66.667 20.55 4.85 0.00 2.34
256 257 4.444838 ATGCGTCGCGGGCTTACA 62.445 61.111 20.55 6.20 0.00 2.41
259 260 3.179265 CGTCGCGGGCTTACAGTG 61.179 66.667 6.13 0.00 0.00 3.66
260 261 2.813908 GTCGCGGGCTTACAGTGG 60.814 66.667 6.13 0.00 0.00 4.00
261 262 4.077184 TCGCGGGCTTACAGTGGG 62.077 66.667 6.13 0.00 0.00 4.61
266 267 2.044946 GGCTTACAGTGGGCCCTG 60.045 66.667 25.70 17.05 39.96 4.45
267 268 2.044946 GCTTACAGTGGGCCCTGG 60.045 66.667 25.70 14.85 36.75 4.45
268 269 2.044946 CTTACAGTGGGCCCTGGC 60.045 66.667 25.70 13.43 36.75 4.85
286 287 3.216237 CATGCTGGCATGCCACAT 58.784 55.556 35.59 33.30 45.71 3.21
287 288 2.421220 CATGCTGGCATGCCACATA 58.579 52.632 34.41 25.49 45.71 2.29
288 289 0.313987 CATGCTGGCATGCCACATAG 59.686 55.000 34.41 27.33 45.71 2.23
289 290 0.826256 ATGCTGGCATGCCACATAGG 60.826 55.000 34.25 26.84 41.89 2.57
300 301 2.099141 CCACATAGGCCACGGATATG 57.901 55.000 5.01 6.45 33.93 1.78
301 302 1.347707 CCACATAGGCCACGGATATGT 59.652 52.381 5.01 7.18 39.99 2.29
302 303 2.612972 CCACATAGGCCACGGATATGTC 60.613 54.545 5.01 0.00 37.90 3.06
303 304 2.300152 CACATAGGCCACGGATATGTCT 59.700 50.000 5.01 0.00 37.90 3.41
304 305 2.300152 ACATAGGCCACGGATATGTCTG 59.700 50.000 5.01 0.00 35.72 3.51
305 306 0.679505 TAGGCCACGGATATGTCTGC 59.320 55.000 5.01 0.00 33.84 4.26
306 307 1.956170 GGCCACGGATATGTCTGCG 60.956 63.158 0.00 0.00 33.84 5.18
307 308 1.227263 GCCACGGATATGTCTGCGT 60.227 57.895 0.00 0.00 33.84 5.24
308 309 0.031585 GCCACGGATATGTCTGCGTA 59.968 55.000 0.00 0.00 33.84 4.42
309 310 1.767289 CCACGGATATGTCTGCGTAC 58.233 55.000 0.00 0.00 33.84 3.67
310 311 1.066454 CCACGGATATGTCTGCGTACA 59.934 52.381 0.00 0.00 33.84 2.90
311 312 2.288213 CCACGGATATGTCTGCGTACAT 60.288 50.000 8.58 8.58 42.62 2.29
312 313 2.726241 CACGGATATGTCTGCGTACATG 59.274 50.000 12.61 0.00 40.29 3.21
313 314 2.288213 ACGGATATGTCTGCGTACATGG 60.288 50.000 12.61 3.96 40.29 3.66
314 315 2.030274 CGGATATGTCTGCGTACATGGA 60.030 50.000 12.61 0.00 40.29 3.41
315 316 3.552068 CGGATATGTCTGCGTACATGGAA 60.552 47.826 12.61 0.00 40.29 3.53
316 317 4.569943 GGATATGTCTGCGTACATGGAAT 58.430 43.478 12.61 0.62 40.29 3.01
332 333 6.228273 CATGGAATGTGACCGTATATGAAC 57.772 41.667 0.00 0.00 40.20 3.18
333 334 4.364860 TGGAATGTGACCGTATATGAACG 58.635 43.478 0.00 0.00 42.49 3.95
334 335 4.142116 TGGAATGTGACCGTATATGAACGT 60.142 41.667 0.00 0.00 41.27 3.99
335 336 4.807304 GGAATGTGACCGTATATGAACGTT 59.193 41.667 0.00 0.00 41.27 3.99
336 337 5.292589 GGAATGTGACCGTATATGAACGTTT 59.707 40.000 0.46 0.00 41.27 3.60
337 338 5.712217 ATGTGACCGTATATGAACGTTTG 57.288 39.130 0.46 0.00 41.27 2.93
338 339 4.558178 TGTGACCGTATATGAACGTTTGT 58.442 39.130 0.46 0.00 41.27 2.83
339 340 4.386350 TGTGACCGTATATGAACGTTTGTG 59.614 41.667 0.46 0.00 41.27 3.33
340 341 3.368539 TGACCGTATATGAACGTTTGTGC 59.631 43.478 0.46 0.00 41.27 4.57
341 342 3.327626 ACCGTATATGAACGTTTGTGCA 58.672 40.909 0.46 0.00 41.27 4.57
342 343 3.747010 ACCGTATATGAACGTTTGTGCAA 59.253 39.130 0.46 0.00 37.14 4.08
343 344 4.142988 ACCGTATATGAACGTTTGTGCAAG 60.143 41.667 0.46 0.00 37.14 4.01
344 345 4.142988 CCGTATATGAACGTTTGTGCAAGT 60.143 41.667 0.46 0.00 37.14 3.16
345 346 5.379003 CGTATATGAACGTTTGTGCAAGTT 58.621 37.500 0.46 0.00 37.14 2.66
346 347 5.849081 CGTATATGAACGTTTGTGCAAGTTT 59.151 36.000 0.46 0.00 37.14 2.66
347 348 6.183359 CGTATATGAACGTTTGTGCAAGTTTG 60.183 38.462 0.46 0.00 37.14 2.93
348 349 3.560902 TGAACGTTTGTGCAAGTTTGA 57.439 38.095 0.46 0.00 27.70 2.69
349 350 4.103365 TGAACGTTTGTGCAAGTTTGAT 57.897 36.364 0.46 0.00 27.70 2.57
350 351 3.856521 TGAACGTTTGTGCAAGTTTGATG 59.143 39.130 0.46 0.00 27.70 3.07
351 352 3.773860 ACGTTTGTGCAAGTTTGATGA 57.226 38.095 0.00 0.00 0.00 2.92
352 353 3.434637 ACGTTTGTGCAAGTTTGATGAC 58.565 40.909 0.00 0.00 0.00 3.06
353 354 2.788786 CGTTTGTGCAAGTTTGATGACC 59.211 45.455 0.00 0.00 0.00 4.02
354 355 3.733380 CGTTTGTGCAAGTTTGATGACCA 60.733 43.478 0.00 0.00 0.00 4.02
355 356 3.713858 TTGTGCAAGTTTGATGACCAG 57.286 42.857 0.00 0.00 0.00 4.00
356 357 2.929641 TGTGCAAGTTTGATGACCAGA 58.070 42.857 0.00 0.00 0.00 3.86
357 358 3.286353 TGTGCAAGTTTGATGACCAGAA 58.714 40.909 0.00 0.00 0.00 3.02
358 359 3.698539 TGTGCAAGTTTGATGACCAGAAA 59.301 39.130 0.00 0.00 0.00 2.52
359 360 4.044426 GTGCAAGTTTGATGACCAGAAAC 58.956 43.478 0.00 0.00 0.00 2.78
360 361 3.698539 TGCAAGTTTGATGACCAGAAACA 59.301 39.130 0.00 0.00 32.96 2.83
361 362 4.044426 GCAAGTTTGATGACCAGAAACAC 58.956 43.478 0.00 0.00 32.96 3.32
362 363 4.282068 CAAGTTTGATGACCAGAAACACG 58.718 43.478 0.00 0.00 32.96 4.49
363 364 3.541632 AGTTTGATGACCAGAAACACGT 58.458 40.909 0.00 0.00 32.96 4.49
364 365 4.699637 AGTTTGATGACCAGAAACACGTA 58.300 39.130 0.00 0.00 32.96 3.57
365 366 5.305585 AGTTTGATGACCAGAAACACGTAT 58.694 37.500 0.00 0.00 32.96 3.06
366 367 5.763204 AGTTTGATGACCAGAAACACGTATT 59.237 36.000 0.00 0.00 32.96 1.89
367 368 6.262273 AGTTTGATGACCAGAAACACGTATTT 59.738 34.615 0.00 0.00 32.96 1.40
368 369 6.627395 TTGATGACCAGAAACACGTATTTT 57.373 33.333 0.00 0.00 0.00 1.82
369 370 7.731882 TTGATGACCAGAAACACGTATTTTA 57.268 32.000 0.00 0.00 0.00 1.52
370 371 7.124347 TGATGACCAGAAACACGTATTTTAC 57.876 36.000 0.00 0.00 0.00 2.01
371 372 6.706716 TGATGACCAGAAACACGTATTTTACA 59.293 34.615 0.00 0.00 0.00 2.41
372 373 6.922247 TGACCAGAAACACGTATTTTACAA 57.078 33.333 0.00 0.00 0.00 2.41
373 374 6.950545 TGACCAGAAACACGTATTTTACAAG 58.049 36.000 0.00 0.00 0.00 3.16
374 375 6.539464 TGACCAGAAACACGTATTTTACAAGT 59.461 34.615 0.00 0.00 0.00 3.16
375 376 7.066043 TGACCAGAAACACGTATTTTACAAGTT 59.934 33.333 0.00 0.00 0.00 2.66
376 377 7.764331 ACCAGAAACACGTATTTTACAAGTTT 58.236 30.769 0.00 0.00 37.73 2.66
377 378 7.698970 ACCAGAAACACGTATTTTACAAGTTTG 59.301 33.333 0.00 0.00 36.26 2.93
378 379 7.698970 CCAGAAACACGTATTTTACAAGTTTGT 59.301 33.333 0.00 2.75 44.86 2.83
379 380 8.520258 CAGAAACACGTATTTTACAAGTTTGTG 58.480 33.333 7.73 0.00 42.31 3.33
380 381 6.799786 AACACGTATTTTACAAGTTTGTGC 57.200 33.333 7.73 0.00 42.31 4.57
381 382 5.881447 ACACGTATTTTACAAGTTTGTGCA 58.119 33.333 7.73 0.00 42.31 4.57
382 383 5.740099 ACACGTATTTTACAAGTTTGTGCAC 59.260 36.000 10.75 10.75 42.31 4.57
383 384 5.172411 CACGTATTTTACAAGTTTGTGCACC 59.828 40.000 15.69 0.00 42.31 5.01
384 385 5.163642 ACGTATTTTACAAGTTTGTGCACCA 60.164 36.000 15.69 0.00 42.31 4.17
385 386 5.744345 CGTATTTTACAAGTTTGTGCACCAA 59.256 36.000 15.69 6.86 42.31 3.67
386 387 6.253727 CGTATTTTACAAGTTTGTGCACCAAA 59.746 34.615 15.69 11.92 42.31 3.28
393 394 0.453793 TTTGTGCACCAAACTGACCG 59.546 50.000 15.69 0.00 38.12 4.79
394 395 0.678366 TTGTGCACCAAACTGACCGT 60.678 50.000 15.69 0.00 0.00 4.83
395 396 1.092921 TGTGCACCAAACTGACCGTC 61.093 55.000 15.69 0.00 0.00 4.79
396 397 1.092921 GTGCACCAAACTGACCGTCA 61.093 55.000 5.22 0.29 0.00 4.35
397 398 1.092921 TGCACCAAACTGACCGTCAC 61.093 55.000 0.00 0.00 0.00 3.67
398 399 1.931551 CACCAAACTGACCGTCACG 59.068 57.895 0.00 0.00 0.00 4.35
399 400 0.808453 CACCAAACTGACCGTCACGT 60.808 55.000 0.00 0.00 0.00 4.49
400 401 0.808453 ACCAAACTGACCGTCACGTG 60.808 55.000 9.94 9.94 0.00 4.49
401 402 1.275657 CAAACTGACCGTCACGTGC 59.724 57.895 11.67 5.23 0.00 5.34
402 403 1.153529 AAACTGACCGTCACGTGCA 60.154 52.632 11.67 1.22 0.00 4.57
403 404 0.741574 AAACTGACCGTCACGTGCAA 60.742 50.000 11.67 0.00 0.00 4.08
404 405 1.151777 AACTGACCGTCACGTGCAAG 61.152 55.000 11.67 3.73 0.00 4.01
405 406 1.591594 CTGACCGTCACGTGCAAGT 60.592 57.895 11.67 7.30 0.00 3.16
406 407 1.151777 CTGACCGTCACGTGCAAGTT 61.152 55.000 11.67 0.00 0.00 2.66
407 408 1.149361 TGACCGTCACGTGCAAGTTC 61.149 55.000 11.67 3.12 0.00 3.01
408 409 0.874607 GACCGTCACGTGCAAGTTCT 60.875 55.000 11.67 0.00 0.00 3.01
409 410 0.874607 ACCGTCACGTGCAAGTTCTC 60.875 55.000 11.67 0.00 0.00 2.87
410 411 1.557443 CCGTCACGTGCAAGTTCTCC 61.557 60.000 11.67 0.00 0.00 3.71
411 412 0.597637 CGTCACGTGCAAGTTCTCCT 60.598 55.000 11.67 0.00 0.00 3.69
412 413 0.861837 GTCACGTGCAAGTTCTCCTG 59.138 55.000 11.67 0.00 0.00 3.86
413 414 0.249868 TCACGTGCAAGTTCTCCTGG 60.250 55.000 11.67 0.00 0.00 4.45
414 415 0.532862 CACGTGCAAGTTCTCCTGGT 60.533 55.000 0.82 0.00 0.00 4.00
415 416 0.532862 ACGTGCAAGTTCTCCTGGTG 60.533 55.000 0.00 0.00 0.00 4.17
416 417 0.532862 CGTGCAAGTTCTCCTGGTGT 60.533 55.000 0.00 0.00 0.00 4.16
417 418 1.270094 CGTGCAAGTTCTCCTGGTGTA 60.270 52.381 0.00 0.00 0.00 2.90
418 419 2.612972 CGTGCAAGTTCTCCTGGTGTAT 60.613 50.000 0.00 0.00 0.00 2.29
419 420 3.412386 GTGCAAGTTCTCCTGGTGTATT 58.588 45.455 0.00 0.00 0.00 1.89
420 421 3.821033 GTGCAAGTTCTCCTGGTGTATTT 59.179 43.478 0.00 0.00 0.00 1.40
421 422 5.001232 GTGCAAGTTCTCCTGGTGTATTTA 58.999 41.667 0.00 0.00 0.00 1.40
422 423 5.001232 TGCAAGTTCTCCTGGTGTATTTAC 58.999 41.667 0.00 0.00 0.00 2.01
423 424 4.395231 GCAAGTTCTCCTGGTGTATTTACC 59.605 45.833 0.00 0.00 41.24 2.85
424 425 5.803470 GCAAGTTCTCCTGGTGTATTTACCT 60.803 44.000 0.00 0.00 41.43 3.08
425 426 5.678955 AGTTCTCCTGGTGTATTTACCTC 57.321 43.478 0.00 0.00 41.43 3.85
432 433 4.096382 CCTGGTGTATTTACCTCAATGCAC 59.904 45.833 6.19 6.19 44.59 4.57
527 528 1.023513 ACCGCATCTCTGCTTGCTTC 61.024 55.000 0.00 0.00 46.65 3.86
565 566 4.783036 CACGTTTTGCTCGAGATTATTGTG 59.217 41.667 18.75 13.06 0.00 3.33
569 570 3.459232 TGCTCGAGATTATTGTGAGGG 57.541 47.619 18.75 0.00 0.00 4.30
570 571 3.031013 TGCTCGAGATTATTGTGAGGGA 58.969 45.455 18.75 0.00 0.00 4.20
571 572 3.068732 TGCTCGAGATTATTGTGAGGGAG 59.931 47.826 18.75 0.00 0.00 4.30
572 573 3.648009 CTCGAGATTATTGTGAGGGAGC 58.352 50.000 6.58 0.00 0.00 4.70
573 574 3.031013 TCGAGATTATTGTGAGGGAGCA 58.969 45.455 0.00 0.00 0.00 4.26
859 882 1.743252 CTGCCTCCGCTCTGGTTTC 60.743 63.158 0.00 0.00 39.52 2.78
860 883 2.177594 CTGCCTCCGCTCTGGTTTCT 62.178 60.000 0.00 0.00 39.52 2.52
861 884 1.448717 GCCTCCGCTCTGGTTTCTC 60.449 63.158 0.00 0.00 39.52 2.87
925 948 4.048470 GGGGTGGAGTTCCTGCCC 62.048 72.222 17.48 17.48 45.04 5.36
996 1039 3.764466 CAAGAGGCGAGGCGAGGT 61.764 66.667 0.00 0.00 0.00 3.85
1007 1050 2.107953 GCGAGGTGAGATGGGCTC 59.892 66.667 0.00 0.00 44.21 4.70
1083 1132 2.897207 CCGGCCAACGTCTCCATA 59.103 61.111 2.24 0.00 42.24 2.74
1206 1255 4.056125 CACCTCAGCCTCGTCGCA 62.056 66.667 0.00 0.00 0.00 5.10
1295 1358 6.966435 TCTTCTTCTTGCCAAAACAAAAAG 57.034 33.333 0.00 0.00 30.40 2.27
1348 1416 1.211743 TTGCTGCGATCAGATTAGCG 58.788 50.000 0.00 0.00 42.95 4.26
1359 1427 6.252281 CGATCAGATTAGCGAATACTAGTCC 58.748 44.000 0.00 0.00 31.17 3.85
1485 1556 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1486 1557 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1487 1558 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1488 1559 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1489 1560 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1490 1561 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1491 1562 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1492 1563 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1493 1564 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1494 1565 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1495 1566 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1496 1567 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1497 1568 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1498 1569 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
1499 1570 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
1537 1608 2.122729 TGGAGGTGGAGGTGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
1538 1609 2.122954 GGAGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
1539 1610 2.294078 GGAGGTGGAGGTGGAGGTG 61.294 68.421 0.00 0.00 0.00 4.00
1643 1723 5.462530 TCTTGACAACGGATTAGTCAGAA 57.537 39.130 0.00 0.00 42.54 3.02
1710 1854 7.739295 ACAACGTGCAGTAGTAATTAATCAAG 58.261 34.615 0.00 0.00 0.00 3.02
1728 1872 4.953667 TCAAGCATGGTAGAAGAGCATAG 58.046 43.478 0.00 0.00 44.58 2.23
1729 1873 3.399440 AGCATGGTAGAAGAGCATAGC 57.601 47.619 0.00 0.00 44.58 2.97
1730 1874 2.038295 AGCATGGTAGAAGAGCATAGCC 59.962 50.000 0.00 0.00 44.58 3.93
1731 1875 2.224378 GCATGGTAGAAGAGCATAGCCA 60.224 50.000 0.00 0.00 44.58 4.75
1732 1876 3.397482 CATGGTAGAAGAGCATAGCCAC 58.603 50.000 0.00 0.00 44.58 5.01
1733 1877 2.752030 TGGTAGAAGAGCATAGCCACT 58.248 47.619 0.00 0.00 0.00 4.00
1734 1878 3.107601 TGGTAGAAGAGCATAGCCACTT 58.892 45.455 0.00 0.00 0.00 3.16
1735 1879 3.519510 TGGTAGAAGAGCATAGCCACTTT 59.480 43.478 0.00 0.00 0.00 2.66
1736 1880 3.873952 GGTAGAAGAGCATAGCCACTTTG 59.126 47.826 0.00 0.00 0.00 2.77
1737 1881 3.710209 AGAAGAGCATAGCCACTTTGT 57.290 42.857 0.00 0.00 0.00 2.83
1738 1882 3.341823 AGAAGAGCATAGCCACTTTGTG 58.658 45.455 0.00 0.00 0.00 3.33
1739 1883 3.008375 AGAAGAGCATAGCCACTTTGTGA 59.992 43.478 0.00 0.00 35.23 3.58
1740 1884 2.983229 AGAGCATAGCCACTTTGTGAG 58.017 47.619 0.00 0.00 35.23 3.51
1741 1885 2.012673 GAGCATAGCCACTTTGTGAGG 58.987 52.381 0.00 0.00 35.23 3.86
1742 1886 1.630369 AGCATAGCCACTTTGTGAGGA 59.370 47.619 0.00 0.00 35.23 3.71
1743 1887 2.240667 AGCATAGCCACTTTGTGAGGAT 59.759 45.455 0.00 0.00 35.23 3.24
1744 1888 2.615912 GCATAGCCACTTTGTGAGGATC 59.384 50.000 0.00 0.00 35.23 3.36
1779 1937 0.381801 CTGACCTGTGTTGGTGTTGC 59.618 55.000 0.00 0.00 41.00 4.17
2290 2460 2.835705 CGGCTACGTCTGGATCGCT 61.836 63.158 0.00 0.00 34.81 4.93
2429 2599 1.900351 CTCACCTCCAGATTCGCCA 59.100 57.895 0.00 0.00 0.00 5.69
2431 2601 1.191489 TCACCTCCAGATTCGCCACA 61.191 55.000 0.00 0.00 0.00 4.17
2533 2703 1.446272 CGAGTTCCTGGAAGACGGC 60.446 63.158 20.23 6.59 34.07 5.68
3480 3653 2.998316 ACTATCTGGCTTCTGCTTCC 57.002 50.000 0.00 0.00 39.59 3.46
3514 3687 2.503356 TCCTTCCCAAGAGATGAAGCTC 59.497 50.000 0.00 0.00 35.32 4.09
3515 3688 2.421248 CCTTCCCAAGAGATGAAGCTCC 60.421 54.545 0.00 0.00 35.32 4.70
3516 3689 0.826715 TCCCAAGAGATGAAGCTCCG 59.173 55.000 0.00 0.00 35.49 4.63
3517 3690 0.826715 CCCAAGAGATGAAGCTCCGA 59.173 55.000 0.00 0.00 35.49 4.55
3518 3691 1.472376 CCCAAGAGATGAAGCTCCGAC 60.472 57.143 0.00 0.00 35.49 4.79
3817 3990 2.795973 CCATCGACGACTACGCCA 59.204 61.111 0.00 0.00 43.96 5.69
3981 4154 6.749923 AGATCCAAACTAAAACTCTGCATC 57.250 37.500 0.00 0.00 0.00 3.91
4018 4191 3.243501 GCTCTGTTTTGTTGCTGAATGGA 60.244 43.478 0.00 0.00 0.00 3.41
4020 4193 5.534207 TCTGTTTTGTTGCTGAATGGATT 57.466 34.783 0.00 0.00 0.00 3.01
4021 4194 5.291178 TCTGTTTTGTTGCTGAATGGATTG 58.709 37.500 0.00 0.00 0.00 2.67
4022 4195 5.068855 TCTGTTTTGTTGCTGAATGGATTGA 59.931 36.000 0.00 0.00 0.00 2.57
4023 4196 5.856156 TGTTTTGTTGCTGAATGGATTGAT 58.144 33.333 0.00 0.00 0.00 2.57
4024 4197 6.289834 TGTTTTGTTGCTGAATGGATTGATT 58.710 32.000 0.00 0.00 0.00 2.57
4170 4343 4.357947 GGGCAGTGCGACTCGTCA 62.358 66.667 9.45 0.00 0.00 4.35
4500 4673 2.066393 CGGGGCATCCTCCTTCTCA 61.066 63.158 0.00 0.00 0.00 3.27
4535 4708 1.468127 GCCAGCTTCTTTCTTCTCTGC 59.532 52.381 0.00 0.00 0.00 4.26
4562 4751 5.278660 GGATGCATGGATGGATTTCTAACAC 60.279 44.000 2.46 0.00 39.04 3.32
4622 4811 3.119101 GCACTCCACAGTAAGCTAAGCTA 60.119 47.826 0.00 0.00 38.25 3.32
4701 4898 5.562298 ACAACAGTACTACCAAGTTGGAT 57.438 39.130 28.80 14.58 40.96 3.41
4773 5384 3.547214 CGTGTTGTGTATGACCCAACAAC 60.547 47.826 8.84 9.89 46.96 3.32
4775 5386 2.873472 GTTGTGTATGACCCAACAACGA 59.127 45.455 2.18 0.00 41.91 3.85
4785 5396 1.535462 CCCAACAACGAGCGATTTTCT 59.465 47.619 0.00 0.00 0.00 2.52
4792 5403 2.400399 ACGAGCGATTTTCTTTCGTCA 58.600 42.857 0.00 0.00 40.06 4.35
4796 5407 4.488797 CGAGCGATTTTCTTTCGTCAATTC 59.511 41.667 0.00 0.00 38.81 2.17
4797 5408 4.394795 AGCGATTTTCTTTCGTCAATTCG 58.605 39.130 0.00 0.00 38.81 3.34
4804 5804 6.784068 TTTCTTTCGTCAATTCGTTGTTTC 57.216 33.333 0.00 0.00 0.00 2.78
4806 5806 2.934107 TCGTCAATTCGTTGTTTCCG 57.066 45.000 0.00 0.00 0.00 4.30
4825 5825 8.083462 TGTTTCCGTTTTCTACTGTTTTCTTTT 58.917 29.630 0.00 0.00 0.00 2.27
4838 5838 8.990163 ACTGTTTTCTTTTGGTCTATTTAGGA 57.010 30.769 0.00 0.00 0.00 2.94
4839 5839 9.416284 ACTGTTTTCTTTTGGTCTATTTAGGAA 57.584 29.630 0.00 0.00 0.00 3.36
4908 5909 8.669946 TTTTCTTTTTCCTTTGTGTTGTTTCT 57.330 26.923 0.00 0.00 0.00 2.52
5293 6583 5.556915 TGTTACTTTGAGATTCATTCGGGT 58.443 37.500 0.00 0.00 0.00 5.28
5295 6585 4.286297 ACTTTGAGATTCATTCGGGTCA 57.714 40.909 0.00 0.00 0.00 4.02
5307 6597 1.866015 TCGGGTCAGGAATCAGATGT 58.134 50.000 0.00 0.00 0.00 3.06
5308 6598 1.482182 TCGGGTCAGGAATCAGATGTG 59.518 52.381 0.00 0.00 0.00 3.21
5372 6662 3.065371 GCCCAACTCCATCGTTTCAATAG 59.935 47.826 0.00 0.00 0.00 1.73
5373 6663 3.065371 CCCAACTCCATCGTTTCAATAGC 59.935 47.826 0.00 0.00 0.00 2.97
5374 6664 3.065371 CCAACTCCATCGTTTCAATAGCC 59.935 47.826 0.00 0.00 0.00 3.93
5375 6665 3.914426 ACTCCATCGTTTCAATAGCCT 57.086 42.857 0.00 0.00 0.00 4.58
5376 6666 4.222124 ACTCCATCGTTTCAATAGCCTT 57.778 40.909 0.00 0.00 0.00 4.35
5377 6667 4.192317 ACTCCATCGTTTCAATAGCCTTC 58.808 43.478 0.00 0.00 0.00 3.46
5378 6668 4.080863 ACTCCATCGTTTCAATAGCCTTCT 60.081 41.667 0.00 0.00 0.00 2.85
5379 6669 5.128827 ACTCCATCGTTTCAATAGCCTTCTA 59.871 40.000 0.00 0.00 0.00 2.10
5380 6670 5.601662 TCCATCGTTTCAATAGCCTTCTAG 58.398 41.667 0.00 0.00 0.00 2.43
5381 6671 4.752101 CCATCGTTTCAATAGCCTTCTAGG 59.248 45.833 0.00 0.00 38.80 3.02
5382 6672 5.360591 CATCGTTTCAATAGCCTTCTAGGT 58.639 41.667 0.00 0.00 37.80 3.08
5383 6673 5.416271 TCGTTTCAATAGCCTTCTAGGTT 57.584 39.130 0.00 0.00 37.80 3.50
5384 6674 5.801380 TCGTTTCAATAGCCTTCTAGGTTT 58.199 37.500 0.00 0.00 37.80 3.27
5385 6675 6.235664 TCGTTTCAATAGCCTTCTAGGTTTT 58.764 36.000 0.00 0.00 37.80 2.43
5386 6676 7.388437 TCGTTTCAATAGCCTTCTAGGTTTTA 58.612 34.615 0.00 0.00 37.80 1.52
5387 6677 7.879160 TCGTTTCAATAGCCTTCTAGGTTTTAA 59.121 33.333 0.00 0.00 37.80 1.52
5388 6678 8.508875 CGTTTCAATAGCCTTCTAGGTTTTAAA 58.491 33.333 0.00 0.00 37.80 1.52
5396 6686 8.563123 AGCCTTCTAGGTTTTAAAATACTCAC 57.437 34.615 3.52 0.00 37.80 3.51
5397 6687 7.333672 AGCCTTCTAGGTTTTAAAATACTCACG 59.666 37.037 3.52 0.25 37.80 4.35
5398 6688 7.332678 GCCTTCTAGGTTTTAAAATACTCACGA 59.667 37.037 3.52 2.26 37.80 4.35
5399 6689 9.379791 CCTTCTAGGTTTTAAAATACTCACGAT 57.620 33.333 3.52 0.00 0.00 3.73
5402 6692 9.932207 TCTAGGTTTTAAAATACTCACGATTGA 57.068 29.630 3.52 0.00 0.00 2.57
5413 6703 4.910746 CTCACGATTGAGTTGAAACGAT 57.089 40.909 0.00 0.00 43.95 3.73
5414 6704 4.632023 CTCACGATTGAGTTGAAACGATG 58.368 43.478 0.00 0.00 43.95 3.84
5415 6705 3.431912 TCACGATTGAGTTGAAACGATGG 59.568 43.478 0.00 0.00 0.00 3.51
5416 6706 3.431912 CACGATTGAGTTGAAACGATGGA 59.568 43.478 0.00 0.00 0.00 3.41
5417 6707 4.093408 CACGATTGAGTTGAAACGATGGAT 59.907 41.667 0.00 0.00 0.00 3.41
5418 6708 4.695455 ACGATTGAGTTGAAACGATGGATT 59.305 37.500 0.00 0.00 0.00 3.01
5419 6709 5.181245 ACGATTGAGTTGAAACGATGGATTT 59.819 36.000 0.00 0.00 0.00 2.17
5420 6710 5.509272 CGATTGAGTTGAAACGATGGATTTG 59.491 40.000 0.00 0.00 0.00 2.32
5421 6711 4.764679 TGAGTTGAAACGATGGATTTGG 57.235 40.909 0.00 0.00 0.00 3.28
5422 6712 3.505680 TGAGTTGAAACGATGGATTTGGG 59.494 43.478 0.00 0.00 0.00 4.12
5423 6713 3.756434 GAGTTGAAACGATGGATTTGGGA 59.244 43.478 0.00 0.00 0.00 4.37
5424 6714 3.506067 AGTTGAAACGATGGATTTGGGAC 59.494 43.478 0.00 0.00 0.00 4.46
5425 6715 3.147553 TGAAACGATGGATTTGGGACA 57.852 42.857 0.00 0.00 0.00 4.02
5426 6716 2.817258 TGAAACGATGGATTTGGGACAC 59.183 45.455 0.00 0.00 39.29 3.67
5427 6717 2.577606 AACGATGGATTTGGGACACA 57.422 45.000 0.00 0.00 39.29 3.72
5428 6718 1.821216 ACGATGGATTTGGGACACAC 58.179 50.000 0.00 0.00 39.29 3.82
5429 6719 1.094785 CGATGGATTTGGGACACACC 58.905 55.000 0.00 0.00 39.29 4.16
5430 6720 1.094785 GATGGATTTGGGACACACCG 58.905 55.000 0.00 0.00 39.29 4.94
5431 6721 0.695924 ATGGATTTGGGACACACCGA 59.304 50.000 0.00 0.00 39.29 4.69
5432 6722 0.474614 TGGATTTGGGACACACCGAA 59.525 50.000 0.00 0.00 39.29 4.30
5433 6723 1.165270 GGATTTGGGACACACCGAAG 58.835 55.000 0.00 0.00 39.29 3.79
5448 6738 2.642139 CGAAGGACTGTTACCGCTAA 57.358 50.000 0.00 0.00 0.00 3.09
5449 6739 2.950433 CGAAGGACTGTTACCGCTAAA 58.050 47.619 0.00 0.00 0.00 1.85
5450 6740 3.319755 CGAAGGACTGTTACCGCTAAAA 58.680 45.455 0.00 0.00 0.00 1.52
5451 6741 3.742369 CGAAGGACTGTTACCGCTAAAAA 59.258 43.478 0.00 0.00 0.00 1.94
5473 6763 6.944234 AAAAACCTAAGGACTGTTCTTGAG 57.056 37.500 11.64 5.16 0.00 3.02
5474 6764 4.625607 AACCTAAGGACTGTTCTTGAGG 57.374 45.455 11.64 14.64 0.00 3.86
5475 6765 2.303311 ACCTAAGGACTGTTCTTGAGGC 59.697 50.000 11.64 0.00 0.00 4.70
5476 6766 2.303022 CCTAAGGACTGTTCTTGAGGCA 59.697 50.000 11.64 0.00 0.00 4.75
5477 6767 2.262423 AAGGACTGTTCTTGAGGCAC 57.738 50.000 0.00 0.00 0.00 5.01
5478 6768 1.131638 AGGACTGTTCTTGAGGCACA 58.868 50.000 0.00 0.00 0.00 4.57
5479 6769 1.701847 AGGACTGTTCTTGAGGCACAT 59.298 47.619 0.00 0.00 0.00 3.21
5480 6770 1.808945 GGACTGTTCTTGAGGCACATG 59.191 52.381 0.00 0.00 0.00 3.21
5481 6771 2.550855 GGACTGTTCTTGAGGCACATGA 60.551 50.000 0.00 0.00 0.00 3.07
5482 6772 3.341823 GACTGTTCTTGAGGCACATGAT 58.658 45.455 0.00 0.00 33.71 2.45
5483 6773 3.079578 ACTGTTCTTGAGGCACATGATG 58.920 45.455 0.00 0.00 33.71 3.07
5484 6774 3.244665 ACTGTTCTTGAGGCACATGATGA 60.245 43.478 0.00 0.00 33.71 2.92
5485 6775 3.753815 TGTTCTTGAGGCACATGATGAA 58.246 40.909 0.00 0.00 33.71 2.57
5486 6776 3.754850 TGTTCTTGAGGCACATGATGAAG 59.245 43.478 0.00 0.00 33.71 3.02
5487 6777 3.708403 TCTTGAGGCACATGATGAAGT 57.292 42.857 0.00 0.00 0.00 3.01
5488 6778 4.025040 TCTTGAGGCACATGATGAAGTT 57.975 40.909 0.00 0.00 0.00 2.66
5489 6779 3.754850 TCTTGAGGCACATGATGAAGTTG 59.245 43.478 0.00 0.00 0.00 3.16
5490 6780 3.421919 TGAGGCACATGATGAAGTTGA 57.578 42.857 0.00 0.00 0.00 3.18
5491 6781 3.753815 TGAGGCACATGATGAAGTTGAA 58.246 40.909 0.00 0.00 0.00 2.69
5492 6782 4.338012 TGAGGCACATGATGAAGTTGAAT 58.662 39.130 0.00 0.00 0.00 2.57
5493 6783 5.499313 TGAGGCACATGATGAAGTTGAATA 58.501 37.500 0.00 0.00 0.00 1.75
5494 6784 5.945191 TGAGGCACATGATGAAGTTGAATAA 59.055 36.000 0.00 0.00 0.00 1.40
5495 6785 6.094464 TGAGGCACATGATGAAGTTGAATAAG 59.906 38.462 0.00 0.00 0.00 1.73
5496 6786 5.948162 AGGCACATGATGAAGTTGAATAAGT 59.052 36.000 0.00 0.00 0.00 2.24
5497 6787 7.112122 AGGCACATGATGAAGTTGAATAAGTA 58.888 34.615 0.00 0.00 0.00 2.24
5498 6788 7.066284 AGGCACATGATGAAGTTGAATAAGTAC 59.934 37.037 0.00 0.00 0.00 2.73
5499 6789 7.148255 GGCACATGATGAAGTTGAATAAGTACA 60.148 37.037 0.00 0.00 0.00 2.90
5500 6790 7.693951 GCACATGATGAAGTTGAATAAGTACAC 59.306 37.037 0.00 0.00 0.00 2.90
5501 6791 8.720562 CACATGATGAAGTTGAATAAGTACACA 58.279 33.333 0.00 0.00 0.00 3.72
5502 6792 9.283768 ACATGATGAAGTTGAATAAGTACACAA 57.716 29.630 0.00 0.00 0.00 3.33
5505 6795 9.500785 TGATGAAGTTGAATAAGTACACAATGA 57.499 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.772973 TCATGTATAGGTAGCACGAATAATTTT 57.227 29.630 0.00 0.00 0.00 1.82
19 20 9.772973 TTCATGTATAGGTAGCACGAATAATTT 57.227 29.630 0.00 0.00 0.00 1.82
20 21 9.944376 ATTCATGTATAGGTAGCACGAATAATT 57.056 29.630 0.00 0.00 0.00 1.40
21 22 9.371136 CATTCATGTATAGGTAGCACGAATAAT 57.629 33.333 0.00 0.00 0.00 1.28
22 23 7.817478 CCATTCATGTATAGGTAGCACGAATAA 59.183 37.037 0.00 0.00 0.00 1.40
23 24 7.039293 ACCATTCATGTATAGGTAGCACGAATA 60.039 37.037 0.00 0.00 0.00 1.75
24 25 6.166279 CCATTCATGTATAGGTAGCACGAAT 58.834 40.000 0.00 0.00 0.00 3.34
25 26 5.069914 ACCATTCATGTATAGGTAGCACGAA 59.930 40.000 0.00 0.00 0.00 3.85
26 27 4.587262 ACCATTCATGTATAGGTAGCACGA 59.413 41.667 0.00 0.00 0.00 4.35
27 28 4.883083 ACCATTCATGTATAGGTAGCACG 58.117 43.478 0.00 0.00 0.00 5.34
28 29 5.853936 TGACCATTCATGTATAGGTAGCAC 58.146 41.667 0.00 0.00 31.57 4.40
29 30 6.686484 ATGACCATTCATGTATAGGTAGCA 57.314 37.500 0.00 3.64 41.23 3.49
30 31 6.372659 CCAATGACCATTCATGTATAGGTAGC 59.627 42.308 6.48 0.00 42.00 3.58
31 32 7.453393 ACCAATGACCATTCATGTATAGGTAG 58.547 38.462 6.48 0.75 42.00 3.18
32 33 7.387265 ACCAATGACCATTCATGTATAGGTA 57.613 36.000 6.48 0.00 42.00 3.08
33 34 6.266131 ACCAATGACCATTCATGTATAGGT 57.734 37.500 6.27 6.27 42.00 3.08
34 35 7.428020 CAAACCAATGACCATTCATGTATAGG 58.572 38.462 0.00 0.00 42.00 2.57
35 36 7.068593 ACCAAACCAATGACCATTCATGTATAG 59.931 37.037 0.00 0.00 42.00 1.31
36 37 6.894654 ACCAAACCAATGACCATTCATGTATA 59.105 34.615 0.00 0.00 42.00 1.47
37 38 5.721000 ACCAAACCAATGACCATTCATGTAT 59.279 36.000 0.00 0.00 42.00 2.29
38 39 5.047448 CACCAAACCAATGACCATTCATGTA 60.047 40.000 0.00 0.00 42.00 2.29
39 40 3.903090 ACCAAACCAATGACCATTCATGT 59.097 39.130 0.00 0.00 42.00 3.21
40 41 4.247258 CACCAAACCAATGACCATTCATG 58.753 43.478 0.00 0.00 42.00 3.07
41 42 3.261390 CCACCAAACCAATGACCATTCAT 59.739 43.478 0.00 0.00 44.98 2.57
42 43 2.632028 CCACCAAACCAATGACCATTCA 59.368 45.455 0.00 0.00 35.73 2.57
43 44 2.632512 ACCACCAAACCAATGACCATTC 59.367 45.455 0.00 0.00 0.00 2.67
44 45 2.688477 ACCACCAAACCAATGACCATT 58.312 42.857 0.00 0.00 0.00 3.16
45 46 2.368221 CAACCACCAAACCAATGACCAT 59.632 45.455 0.00 0.00 0.00 3.55
46 47 1.759445 CAACCACCAAACCAATGACCA 59.241 47.619 0.00 0.00 0.00 4.02
47 48 1.760029 ACAACCACCAAACCAATGACC 59.240 47.619 0.00 0.00 0.00 4.02
48 49 3.535280 AACAACCACCAAACCAATGAC 57.465 42.857 0.00 0.00 0.00 3.06
49 50 5.012328 GTTAACAACCACCAAACCAATGA 57.988 39.130 0.00 0.00 0.00 2.57
62 63 7.368882 CCCTACTAGGCTCAGGTTAACAACC 62.369 52.000 8.10 0.00 42.45 3.77
63 64 4.382793 CCCTACTAGGCTCAGGTTAACAAC 60.383 50.000 8.10 0.00 32.73 3.32
64 65 3.773119 CCCTACTAGGCTCAGGTTAACAA 59.227 47.826 8.10 0.00 32.73 2.83
65 66 3.371965 CCCTACTAGGCTCAGGTTAACA 58.628 50.000 8.10 0.00 32.73 2.41
66 67 2.699321 CCCCTACTAGGCTCAGGTTAAC 59.301 54.545 0.00 0.00 32.73 2.01
67 68 3.042059 CCCCTACTAGGCTCAGGTTAA 57.958 52.381 0.00 0.00 32.73 2.01
68 69 2.769602 CCCCTACTAGGCTCAGGTTA 57.230 55.000 0.00 0.00 32.73 2.85
69 70 3.637065 CCCCTACTAGGCTCAGGTT 57.363 57.895 0.00 0.00 32.73 3.50
77 78 3.534941 GGACGTGCCCCTACTAGG 58.465 66.667 0.00 0.00 34.30 3.02
86 87 2.071540 GTTACAAACTAGGGACGTGCC 58.928 52.381 19.86 19.86 0.00 5.01
87 88 2.071540 GGTTACAAACTAGGGACGTGC 58.928 52.381 0.00 0.00 0.00 5.34
88 89 2.030007 TCGGTTACAAACTAGGGACGTG 60.030 50.000 0.00 0.00 0.00 4.49
89 90 2.238521 TCGGTTACAAACTAGGGACGT 58.761 47.619 0.00 0.00 0.00 4.34
90 91 2.989166 GTTCGGTTACAAACTAGGGACG 59.011 50.000 0.00 0.00 0.00 4.79
91 92 3.329386 GGTTCGGTTACAAACTAGGGAC 58.671 50.000 0.00 0.00 0.00 4.46
92 93 2.302733 GGGTTCGGTTACAAACTAGGGA 59.697 50.000 0.00 0.00 0.00 4.20
93 94 2.616256 GGGGTTCGGTTACAAACTAGGG 60.616 54.545 0.00 0.00 0.00 3.53
94 95 2.303890 AGGGGTTCGGTTACAAACTAGG 59.696 50.000 0.00 0.00 0.00 3.02
95 96 3.690475 AGGGGTTCGGTTACAAACTAG 57.310 47.619 0.00 0.00 0.00 2.57
96 97 3.136260 ACAAGGGGTTCGGTTACAAACTA 59.864 43.478 1.12 0.00 0.00 2.24
97 98 2.092267 ACAAGGGGTTCGGTTACAAACT 60.092 45.455 1.12 0.00 0.00 2.66
98 99 2.300433 ACAAGGGGTTCGGTTACAAAC 58.700 47.619 0.00 0.00 0.00 2.93
99 100 2.732844 ACAAGGGGTTCGGTTACAAA 57.267 45.000 0.00 0.00 0.00 2.83
100 101 2.732844 AACAAGGGGTTCGGTTACAA 57.267 45.000 0.00 0.00 33.35 2.41
101 102 2.732844 AAACAAGGGGTTCGGTTACA 57.267 45.000 0.00 0.00 39.29 2.41
102 103 3.243501 GGAAAAACAAGGGGTTCGGTTAC 60.244 47.826 0.00 0.00 39.29 2.50
103 104 2.957680 GGAAAAACAAGGGGTTCGGTTA 59.042 45.455 0.00 0.00 39.29 2.85
104 105 1.758280 GGAAAAACAAGGGGTTCGGTT 59.242 47.619 0.00 0.00 39.29 4.44
105 106 1.342175 TGGAAAAACAAGGGGTTCGGT 60.342 47.619 0.00 0.00 39.29 4.69
106 107 1.404843 TGGAAAAACAAGGGGTTCGG 58.595 50.000 0.00 0.00 39.29 4.30
107 108 3.744238 AATGGAAAAACAAGGGGTTCG 57.256 42.857 0.00 0.00 39.29 3.95
108 109 8.458573 AAATAAAATGGAAAAACAAGGGGTTC 57.541 30.769 0.00 0.00 39.29 3.62
109 110 8.830915 AAAATAAAATGGAAAAACAAGGGGTT 57.169 26.923 0.00 0.00 42.98 4.11
110 111 9.567776 CTAAAATAAAATGGAAAAACAAGGGGT 57.432 29.630 0.00 0.00 0.00 4.95
111 112 9.008965 CCTAAAATAAAATGGAAAAACAAGGGG 57.991 33.333 0.00 0.00 0.00 4.79
112 113 9.008965 CCCTAAAATAAAATGGAAAAACAAGGG 57.991 33.333 0.00 0.00 0.00 3.95
113 114 9.008965 CCCCTAAAATAAAATGGAAAAACAAGG 57.991 33.333 0.00 0.00 0.00 3.61
114 115 8.511321 GCCCCTAAAATAAAATGGAAAAACAAG 58.489 33.333 0.00 0.00 0.00 3.16
115 116 8.221251 AGCCCCTAAAATAAAATGGAAAAACAA 58.779 29.630 0.00 0.00 0.00 2.83
116 117 7.750655 AGCCCCTAAAATAAAATGGAAAAACA 58.249 30.769 0.00 0.00 0.00 2.83
117 118 8.630054 AAGCCCCTAAAATAAAATGGAAAAAC 57.370 30.769 0.00 0.00 0.00 2.43
122 123 8.852135 CGTATAAAGCCCCTAAAATAAAATGGA 58.148 33.333 0.00 0.00 0.00 3.41
123 124 8.635328 ACGTATAAAGCCCCTAAAATAAAATGG 58.365 33.333 0.00 0.00 0.00 3.16
220 221 5.066893 ACGCATGATAGATCTGCATGTTTTT 59.933 36.000 27.19 14.80 41.01 1.94
221 222 4.577693 ACGCATGATAGATCTGCATGTTTT 59.422 37.500 27.19 16.39 41.01 2.43
222 223 4.132336 ACGCATGATAGATCTGCATGTTT 58.868 39.130 27.19 18.01 41.01 2.83
223 224 3.736720 ACGCATGATAGATCTGCATGTT 58.263 40.909 27.19 18.24 41.01 2.71
224 225 3.324117 GACGCATGATAGATCTGCATGT 58.676 45.455 27.19 16.64 41.01 3.21
225 226 2.344741 CGACGCATGATAGATCTGCATG 59.655 50.000 24.76 24.76 41.66 4.06
226 227 2.603953 CGACGCATGATAGATCTGCAT 58.396 47.619 5.18 6.29 33.51 3.96
227 228 1.932156 GCGACGCATGATAGATCTGCA 60.932 52.381 16.42 3.92 33.51 4.41
228 229 0.712775 GCGACGCATGATAGATCTGC 59.287 55.000 16.42 0.00 0.00 4.26
229 230 0.980525 CGCGACGCATGATAGATCTG 59.019 55.000 21.35 0.00 0.00 2.90
230 231 0.109551 CCGCGACGCATGATAGATCT 60.110 55.000 21.35 0.00 0.00 2.75
231 232 1.073216 CCCGCGACGCATGATAGATC 61.073 60.000 21.35 0.00 0.00 2.75
232 233 1.080501 CCCGCGACGCATGATAGAT 60.081 57.895 21.35 0.00 0.00 1.98
233 234 2.335011 CCCGCGACGCATGATAGA 59.665 61.111 21.35 0.00 0.00 1.98
234 235 3.406361 GCCCGCGACGCATGATAG 61.406 66.667 21.35 1.59 0.00 2.08
235 236 2.077821 TAAGCCCGCGACGCATGATA 62.078 55.000 21.35 3.05 0.00 2.15
236 237 3.439513 TAAGCCCGCGACGCATGAT 62.440 57.895 21.35 5.51 0.00 2.45
237 238 4.136511 TAAGCCCGCGACGCATGA 62.137 61.111 21.35 0.00 0.00 3.07
238 239 3.925238 GTAAGCCCGCGACGCATG 61.925 66.667 21.35 10.93 0.00 4.06
239 240 4.444838 TGTAAGCCCGCGACGCAT 62.445 61.111 21.35 4.14 0.00 4.73
242 243 3.179265 CACTGTAAGCCCGCGACG 61.179 66.667 8.23 0.00 37.60 5.12
243 244 2.813908 CCACTGTAAGCCCGCGAC 60.814 66.667 8.23 0.00 37.60 5.19
244 245 4.077184 CCCACTGTAAGCCCGCGA 62.077 66.667 8.23 0.00 37.60 5.87
249 250 2.044946 CAGGGCCCACTGTAAGCC 60.045 66.667 27.56 10.89 46.37 4.35
250 251 2.044946 CCAGGGCCCACTGTAAGC 60.045 66.667 27.56 0.00 37.60 3.09
251 252 2.044946 GCCAGGGCCCACTGTAAG 60.045 66.667 27.56 4.87 36.75 2.34
281 282 1.347707 ACATATCCGTGGCCTATGTGG 59.652 52.381 12.47 3.83 35.37 4.17
282 283 2.300152 AGACATATCCGTGGCCTATGTG 59.700 50.000 16.87 10.11 36.48 3.21
283 284 2.300152 CAGACATATCCGTGGCCTATGT 59.700 50.000 12.97 12.97 38.46 2.29
284 285 2.932622 GCAGACATATCCGTGGCCTATG 60.933 54.545 3.32 5.81 0.00 2.23
285 286 1.276421 GCAGACATATCCGTGGCCTAT 59.724 52.381 3.32 0.00 0.00 2.57
286 287 0.679505 GCAGACATATCCGTGGCCTA 59.320 55.000 3.32 0.00 0.00 3.93
287 288 1.447643 GCAGACATATCCGTGGCCT 59.552 57.895 3.32 0.00 0.00 5.19
288 289 1.956170 CGCAGACATATCCGTGGCC 60.956 63.158 0.00 0.00 0.00 5.36
289 290 0.031585 TACGCAGACATATCCGTGGC 59.968 55.000 0.00 0.00 35.36 5.01
290 291 1.066454 TGTACGCAGACATATCCGTGG 59.934 52.381 0.00 0.00 35.36 4.94
291 292 2.485266 TGTACGCAGACATATCCGTG 57.515 50.000 0.00 0.00 35.36 4.94
292 293 2.288213 CCATGTACGCAGACATATCCGT 60.288 50.000 0.41 0.00 37.99 4.69
293 294 2.030274 TCCATGTACGCAGACATATCCG 60.030 50.000 0.41 0.00 37.99 4.18
294 295 3.660501 TCCATGTACGCAGACATATCC 57.339 47.619 0.41 0.00 37.99 2.59
295 296 4.991056 ACATTCCATGTACGCAGACATATC 59.009 41.667 0.41 0.00 42.78 1.63
296 297 4.751600 CACATTCCATGTACGCAGACATAT 59.248 41.667 0.41 0.00 42.70 1.78
297 298 4.119136 CACATTCCATGTACGCAGACATA 58.881 43.478 0.41 0.00 42.70 2.29
298 299 2.938451 CACATTCCATGTACGCAGACAT 59.062 45.455 0.00 0.00 42.70 3.06
299 300 2.028567 TCACATTCCATGTACGCAGACA 60.029 45.455 0.00 0.00 42.70 3.41
300 301 2.348666 GTCACATTCCATGTACGCAGAC 59.651 50.000 0.00 0.00 42.70 3.51
301 302 2.616960 GTCACATTCCATGTACGCAGA 58.383 47.619 0.00 0.00 42.70 4.26
302 303 1.665679 GGTCACATTCCATGTACGCAG 59.334 52.381 0.00 0.00 42.70 5.18
303 304 1.732941 GGTCACATTCCATGTACGCA 58.267 50.000 0.00 0.00 42.70 5.24
304 305 0.650512 CGGTCACATTCCATGTACGC 59.349 55.000 0.00 0.00 42.70 4.42
305 306 2.004583 ACGGTCACATTCCATGTACG 57.995 50.000 0.00 6.36 42.70 3.67
306 307 6.452242 TCATATACGGTCACATTCCATGTAC 58.548 40.000 0.00 0.00 42.70 2.90
307 308 6.658188 TCATATACGGTCACATTCCATGTA 57.342 37.500 0.00 0.00 42.70 2.29
308 309 5.545063 TCATATACGGTCACATTCCATGT 57.455 39.130 0.00 0.00 46.22 3.21
309 310 5.107491 CGTTCATATACGGTCACATTCCATG 60.107 44.000 0.00 0.00 37.86 3.66
310 311 4.988540 CGTTCATATACGGTCACATTCCAT 59.011 41.667 0.00 0.00 37.86 3.41
311 312 4.142116 ACGTTCATATACGGTCACATTCCA 60.142 41.667 3.27 0.00 45.44 3.53
312 313 4.365723 ACGTTCATATACGGTCACATTCC 58.634 43.478 3.27 0.00 45.44 3.01
313 314 5.961395 AACGTTCATATACGGTCACATTC 57.039 39.130 0.00 0.00 45.44 2.67
314 315 5.640357 ACAAACGTTCATATACGGTCACATT 59.360 36.000 0.00 0.00 41.29 2.71
315 316 5.062934 CACAAACGTTCATATACGGTCACAT 59.937 40.000 0.00 0.00 41.29 3.21
316 317 4.386350 CACAAACGTTCATATACGGTCACA 59.614 41.667 0.00 0.00 41.29 3.58
317 318 4.722908 GCACAAACGTTCATATACGGTCAC 60.723 45.833 0.00 0.00 41.29 3.67
318 319 3.368539 GCACAAACGTTCATATACGGTCA 59.631 43.478 0.00 0.00 41.29 4.02
319 320 3.368539 TGCACAAACGTTCATATACGGTC 59.631 43.478 0.00 0.00 41.29 4.79
320 321 3.327626 TGCACAAACGTTCATATACGGT 58.672 40.909 0.00 0.00 44.63 4.83
321 322 4.142988 ACTTGCACAAACGTTCATATACGG 60.143 41.667 0.00 0.00 45.44 4.02
322 323 4.953269 ACTTGCACAAACGTTCATATACG 58.047 39.130 0.00 0.00 46.52 3.06
323 324 6.853872 TCAAACTTGCACAAACGTTCATATAC 59.146 34.615 0.00 0.00 0.00 1.47
324 325 6.960468 TCAAACTTGCACAAACGTTCATATA 58.040 32.000 0.00 0.00 0.00 0.86
325 326 5.826586 TCAAACTTGCACAAACGTTCATAT 58.173 33.333 0.00 0.00 0.00 1.78
326 327 5.236655 TCAAACTTGCACAAACGTTCATA 57.763 34.783 0.00 0.00 0.00 2.15
327 328 4.103365 TCAAACTTGCACAAACGTTCAT 57.897 36.364 0.00 0.00 0.00 2.57
328 329 3.560902 TCAAACTTGCACAAACGTTCA 57.439 38.095 0.00 0.00 0.00 3.18
329 330 4.027702 GTCATCAAACTTGCACAAACGTTC 60.028 41.667 0.00 0.00 0.00 3.95
330 331 3.857093 GTCATCAAACTTGCACAAACGTT 59.143 39.130 0.00 0.00 0.00 3.99
331 332 3.434637 GTCATCAAACTTGCACAAACGT 58.565 40.909 0.00 0.00 0.00 3.99
332 333 2.788786 GGTCATCAAACTTGCACAAACG 59.211 45.455 0.00 0.00 0.00 3.60
333 334 3.779759 TGGTCATCAAACTTGCACAAAC 58.220 40.909 0.00 0.00 0.00 2.93
334 335 3.698539 TCTGGTCATCAAACTTGCACAAA 59.301 39.130 0.00 0.00 0.00 2.83
335 336 3.286353 TCTGGTCATCAAACTTGCACAA 58.714 40.909 0.00 0.00 0.00 3.33
336 337 2.929641 TCTGGTCATCAAACTTGCACA 58.070 42.857 0.00 0.00 0.00 4.57
337 338 3.988379 TTCTGGTCATCAAACTTGCAC 57.012 42.857 0.00 0.00 0.00 4.57
338 339 3.698539 TGTTTCTGGTCATCAAACTTGCA 59.301 39.130 0.00 0.00 32.28 4.08
339 340 4.044426 GTGTTTCTGGTCATCAAACTTGC 58.956 43.478 0.00 0.00 32.28 4.01
340 341 4.201910 ACGTGTTTCTGGTCATCAAACTTG 60.202 41.667 0.00 0.00 32.28 3.16
341 342 3.945285 ACGTGTTTCTGGTCATCAAACTT 59.055 39.130 0.00 0.00 32.28 2.66
342 343 3.541632 ACGTGTTTCTGGTCATCAAACT 58.458 40.909 0.00 0.00 32.28 2.66
343 344 3.963383 ACGTGTTTCTGGTCATCAAAC 57.037 42.857 0.00 0.00 0.00 2.93
344 345 6.627395 AAATACGTGTTTCTGGTCATCAAA 57.373 33.333 4.25 0.00 0.00 2.69
345 346 6.627395 AAAATACGTGTTTCTGGTCATCAA 57.373 33.333 10.88 0.00 0.00 2.57
346 347 6.706716 TGTAAAATACGTGTTTCTGGTCATCA 59.293 34.615 10.88 0.46 0.00 3.07
347 348 7.124347 TGTAAAATACGTGTTTCTGGTCATC 57.876 36.000 10.88 0.00 0.00 2.92
348 349 7.227910 ACTTGTAAAATACGTGTTTCTGGTCAT 59.772 33.333 10.88 0.00 0.00 3.06
349 350 6.539464 ACTTGTAAAATACGTGTTTCTGGTCA 59.461 34.615 10.88 4.08 0.00 4.02
350 351 6.951643 ACTTGTAAAATACGTGTTTCTGGTC 58.048 36.000 10.88 1.79 0.00 4.02
351 352 6.930667 ACTTGTAAAATACGTGTTTCTGGT 57.069 33.333 10.88 3.96 0.00 4.00
352 353 7.698970 ACAAACTTGTAAAATACGTGTTTCTGG 59.301 33.333 10.88 3.42 40.16 3.86
353 354 8.520258 CACAAACTTGTAAAATACGTGTTTCTG 58.480 33.333 10.88 0.00 39.91 3.02
354 355 7.219344 GCACAAACTTGTAAAATACGTGTTTCT 59.781 33.333 10.88 4.58 39.91 2.52
355 356 7.008447 TGCACAAACTTGTAAAATACGTGTTTC 59.992 33.333 10.88 0.39 39.91 2.78
356 357 6.807230 TGCACAAACTTGTAAAATACGTGTTT 59.193 30.769 4.25 4.25 39.91 2.83
357 358 6.251801 GTGCACAAACTTGTAAAATACGTGTT 59.748 34.615 13.17 0.00 39.91 3.32
358 359 5.740099 GTGCACAAACTTGTAAAATACGTGT 59.260 36.000 13.17 0.00 39.91 4.49
359 360 5.172411 GGTGCACAAACTTGTAAAATACGTG 59.828 40.000 20.43 0.00 39.91 4.49
360 361 5.163642 TGGTGCACAAACTTGTAAAATACGT 60.164 36.000 20.43 0.00 39.91 3.57
361 362 5.274718 TGGTGCACAAACTTGTAAAATACG 58.725 37.500 20.43 0.00 39.91 3.06
362 363 7.527084 TTTGGTGCACAAACTTGTAAAATAC 57.473 32.000 20.43 0.00 43.81 1.89
374 375 0.453793 CGGTCAGTTTGGTGCACAAA 59.546 50.000 20.43 11.67 46.34 2.83
375 376 0.678366 ACGGTCAGTTTGGTGCACAA 60.678 50.000 20.43 3.78 37.28 3.33
376 377 1.078072 ACGGTCAGTTTGGTGCACA 60.078 52.632 20.43 1.62 0.00 4.57
377 378 1.092921 TGACGGTCAGTTTGGTGCAC 61.093 55.000 8.80 8.80 0.00 4.57
378 379 1.092921 GTGACGGTCAGTTTGGTGCA 61.093 55.000 11.83 0.00 0.00 4.57
379 380 1.647084 GTGACGGTCAGTTTGGTGC 59.353 57.895 11.83 0.00 0.00 5.01
380 381 0.808453 ACGTGACGGTCAGTTTGGTG 60.808 55.000 11.83 0.00 0.00 4.17
381 382 0.808453 CACGTGACGGTCAGTTTGGT 60.808 55.000 10.90 2.30 0.00 3.67
382 383 1.931551 CACGTGACGGTCAGTTTGG 59.068 57.895 10.90 1.68 0.00 3.28
383 384 1.275657 GCACGTGACGGTCAGTTTG 59.724 57.895 22.23 9.78 0.00 2.93
384 385 0.741574 TTGCACGTGACGGTCAGTTT 60.742 50.000 22.23 0.00 0.00 2.66
385 386 1.151777 CTTGCACGTGACGGTCAGTT 61.152 55.000 22.23 0.00 0.00 3.16
386 387 1.591594 CTTGCACGTGACGGTCAGT 60.592 57.895 22.23 9.02 0.00 3.41
387 388 1.151777 AACTTGCACGTGACGGTCAG 61.152 55.000 22.23 8.39 0.00 3.51
388 389 1.149361 GAACTTGCACGTGACGGTCA 61.149 55.000 22.23 6.76 0.00 4.02
389 390 0.874607 AGAACTTGCACGTGACGGTC 60.875 55.000 22.23 14.00 0.00 4.79
390 391 0.874607 GAGAACTTGCACGTGACGGT 60.875 55.000 22.23 10.73 0.00 4.83
391 392 1.557443 GGAGAACTTGCACGTGACGG 61.557 60.000 22.23 10.04 0.00 4.79
392 393 0.597637 AGGAGAACTTGCACGTGACG 60.598 55.000 22.23 2.24 0.00 4.35
393 394 0.861837 CAGGAGAACTTGCACGTGAC 59.138 55.000 22.23 11.46 0.00 3.67
394 395 0.249868 CCAGGAGAACTTGCACGTGA 60.250 55.000 22.23 1.04 0.00 4.35
395 396 0.532862 ACCAGGAGAACTTGCACGTG 60.533 55.000 12.28 12.28 0.00 4.49
396 397 0.532862 CACCAGGAGAACTTGCACGT 60.533 55.000 0.00 0.00 0.00 4.49
397 398 0.532862 ACACCAGGAGAACTTGCACG 60.533 55.000 0.00 0.00 0.00 5.34
398 399 2.543777 TACACCAGGAGAACTTGCAC 57.456 50.000 0.00 0.00 0.00 4.57
399 400 3.788227 AATACACCAGGAGAACTTGCA 57.212 42.857 0.00 0.00 0.00 4.08
400 401 4.395231 GGTAAATACACCAGGAGAACTTGC 59.605 45.833 0.00 0.00 38.55 4.01
401 402 5.805728 AGGTAAATACACCAGGAGAACTTG 58.194 41.667 0.00 0.00 41.40 3.16
402 403 5.546499 TGAGGTAAATACACCAGGAGAACTT 59.454 40.000 0.00 0.00 41.40 2.66
403 404 5.091552 TGAGGTAAATACACCAGGAGAACT 58.908 41.667 0.00 0.00 41.40 3.01
404 405 5.416271 TGAGGTAAATACACCAGGAGAAC 57.584 43.478 0.00 0.00 41.40 3.01
405 406 6.414732 CATTGAGGTAAATACACCAGGAGAA 58.585 40.000 0.00 0.00 41.40 2.87
406 407 5.629133 GCATTGAGGTAAATACACCAGGAGA 60.629 44.000 0.00 0.00 41.40 3.71
407 408 4.576463 GCATTGAGGTAAATACACCAGGAG 59.424 45.833 0.00 0.00 41.40 3.69
408 409 4.018870 TGCATTGAGGTAAATACACCAGGA 60.019 41.667 0.00 0.00 41.40 3.86
409 410 4.096382 GTGCATTGAGGTAAATACACCAGG 59.904 45.833 0.00 0.00 41.40 4.45
410 411 4.943705 AGTGCATTGAGGTAAATACACCAG 59.056 41.667 0.00 0.00 41.40 4.00
411 412 4.699735 CAGTGCATTGAGGTAAATACACCA 59.300 41.667 2.46 0.00 41.40 4.17
412 413 4.438744 GCAGTGCATTGAGGTAAATACACC 60.439 45.833 14.15 0.00 35.32 4.16
413 414 4.155826 TGCAGTGCATTGAGGTAAATACAC 59.844 41.667 15.37 0.00 35.07 2.90
414 415 4.331108 TGCAGTGCATTGAGGTAAATACA 58.669 39.130 15.37 0.00 31.71 2.29
415 416 4.963276 TGCAGTGCATTGAGGTAAATAC 57.037 40.909 15.37 0.00 31.71 1.89
432 433 2.324330 TTTCACGTCGCCCATGCAG 61.324 57.895 0.00 0.00 37.32 4.41
441 442 1.554042 CGGTTCAGGGTTTCACGTCG 61.554 60.000 0.00 0.00 0.00 5.12
494 495 0.531974 TGCGGTTGGGCGAATCTATC 60.532 55.000 0.00 0.00 35.06 2.08
527 528 0.179127 ACGTGGATGCTCGTCAGATG 60.179 55.000 8.59 0.00 35.30 2.90
565 566 2.300850 CTGCTCTGCTCTGCTCCCTC 62.301 65.000 0.00 0.00 0.00 4.30
569 570 0.037512 TTGACTGCTCTGCTCTGCTC 60.038 55.000 0.00 0.00 0.00 4.26
570 571 0.320596 GTTGACTGCTCTGCTCTGCT 60.321 55.000 0.00 0.00 0.00 4.24
571 572 0.602106 TGTTGACTGCTCTGCTCTGC 60.602 55.000 0.00 0.00 0.00 4.26
572 573 1.000618 TCTGTTGACTGCTCTGCTCTG 59.999 52.381 0.00 0.00 0.00 3.35
573 574 1.273048 CTCTGTTGACTGCTCTGCTCT 59.727 52.381 0.00 0.00 0.00 4.09
832 855 3.610669 CGGAGGCAGGGAGGATCG 61.611 72.222 0.00 0.00 34.37 3.69
844 867 1.219393 GGAGAAACCAGAGCGGAGG 59.781 63.158 0.00 0.00 38.63 4.30
925 948 4.714308 GTGGGAGATATATCAAGGGAGGAG 59.286 50.000 15.08 0.00 0.00 3.69
974 1002 2.125350 GCCTCGCCTCTTGTGGAG 60.125 66.667 0.00 0.00 41.51 3.86
980 1023 3.764466 CACCTCGCCTCGCCTCTT 61.764 66.667 0.00 0.00 0.00 2.85
996 1039 2.042537 AGAGCCGAGCCCATCTCA 60.043 61.111 0.00 0.00 41.98 3.27
1206 1255 1.526917 GCTGCACTTGGTGTCCTGT 60.527 57.895 0.00 0.00 35.75 4.00
1295 1358 6.014413 GGGGTATTAGAACTGTAGGAGGATTC 60.014 46.154 0.00 0.00 0.00 2.52
1348 1416 6.380095 AGTTCGTGATGAGGACTAGTATTC 57.620 41.667 0.00 0.00 0.00 1.75
1359 1427 4.452114 TGTGGAATCAAAGTTCGTGATGAG 59.548 41.667 0.00 0.00 35.87 2.90
1485 1556 1.221635 TGAGGGGGAGAGAGAGAGAG 58.778 60.000 0.00 0.00 0.00 3.20
1486 1557 1.919933 ATGAGGGGGAGAGAGAGAGA 58.080 55.000 0.00 0.00 0.00 3.10
1487 1558 2.091389 TGAATGAGGGGGAGAGAGAGAG 60.091 54.545 0.00 0.00 0.00 3.20
1488 1559 1.933051 TGAATGAGGGGGAGAGAGAGA 59.067 52.381 0.00 0.00 0.00 3.10
1489 1560 2.318908 CTGAATGAGGGGGAGAGAGAG 58.681 57.143 0.00 0.00 0.00 3.20
1490 1561 1.648568 ACTGAATGAGGGGGAGAGAGA 59.351 52.381 0.00 0.00 0.00 3.10
1491 1562 2.170187 CAACTGAATGAGGGGGAGAGAG 59.830 54.545 0.00 0.00 0.00 3.20
1492 1563 2.191400 CAACTGAATGAGGGGGAGAGA 58.809 52.381 0.00 0.00 0.00 3.10
1493 1564 2.093235 GTCAACTGAATGAGGGGGAGAG 60.093 54.545 0.00 0.00 0.00 3.20
1494 1565 1.909302 GTCAACTGAATGAGGGGGAGA 59.091 52.381 0.00 0.00 0.00 3.71
1495 1566 1.912043 AGTCAACTGAATGAGGGGGAG 59.088 52.381 0.00 0.00 0.00 4.30
1496 1567 1.909302 GAGTCAACTGAATGAGGGGGA 59.091 52.381 0.00 0.00 0.00 4.81
1497 1568 1.912043 AGAGTCAACTGAATGAGGGGG 59.088 52.381 0.00 0.00 0.00 5.40
1498 1569 2.417924 CGAGAGTCAACTGAATGAGGGG 60.418 54.545 0.00 0.00 0.00 4.79
1499 1570 2.232452 ACGAGAGTCAACTGAATGAGGG 59.768 50.000 0.00 0.00 44.19 4.30
1643 1723 0.402504 TGGCACGGAACAGGGTATTT 59.597 50.000 0.00 0.00 0.00 1.40
1710 1854 2.224378 TGGCTATGCTCTTCTACCATGC 60.224 50.000 0.00 0.00 0.00 4.06
1728 1872 0.955428 TGCGATCCTCACAAAGTGGC 60.955 55.000 0.00 0.00 33.87 5.01
1729 1873 1.081892 CTGCGATCCTCACAAAGTGG 58.918 55.000 0.00 0.00 33.87 4.00
1730 1874 1.800805 ACTGCGATCCTCACAAAGTG 58.199 50.000 0.00 0.00 34.45 3.16
1731 1875 2.146342 CAACTGCGATCCTCACAAAGT 58.854 47.619 0.00 0.00 0.00 2.66
1732 1876 2.414481 CTCAACTGCGATCCTCACAAAG 59.586 50.000 0.00 0.00 0.00 2.77
1733 1877 2.224281 ACTCAACTGCGATCCTCACAAA 60.224 45.455 0.00 0.00 0.00 2.83
1734 1878 1.344438 ACTCAACTGCGATCCTCACAA 59.656 47.619 0.00 0.00 0.00 3.33
1735 1879 0.969149 ACTCAACTGCGATCCTCACA 59.031 50.000 0.00 0.00 0.00 3.58
1736 1880 1.728971 CAACTCAACTGCGATCCTCAC 59.271 52.381 0.00 0.00 0.00 3.51
1737 1881 1.618343 TCAACTCAACTGCGATCCTCA 59.382 47.619 0.00 0.00 0.00 3.86
1738 1882 1.996191 GTCAACTCAACTGCGATCCTC 59.004 52.381 0.00 0.00 0.00 3.71
1739 1883 1.344438 TGTCAACTCAACTGCGATCCT 59.656 47.619 0.00 0.00 0.00 3.24
1740 1884 1.461127 GTGTCAACTCAACTGCGATCC 59.539 52.381 0.00 0.00 0.00 3.36
1741 1885 2.156504 CAGTGTCAACTCAACTGCGATC 59.843 50.000 0.00 0.00 32.98 3.69
1742 1886 2.138320 CAGTGTCAACTCAACTGCGAT 58.862 47.619 0.00 0.00 32.98 4.58
1743 1887 1.136110 TCAGTGTCAACTCAACTGCGA 59.864 47.619 0.00 0.00 32.98 5.10
1744 1888 1.258982 GTCAGTGTCAACTCAACTGCG 59.741 52.381 0.00 0.00 32.98 5.18
2431 2601 4.021925 GTCCGGTTCAGCTGGGCT 62.022 66.667 15.13 0.00 44.79 5.19
2533 2703 1.443872 CGAGAAGGTGACGTTCCCG 60.444 63.158 13.72 10.63 40.83 5.14
2644 2814 0.957395 AGTTGGCGAGCATCACCTTG 60.957 55.000 0.00 0.00 38.41 3.61
3514 3687 4.199310 ACCACCATTGATTTATCAGTCGG 58.801 43.478 0.00 0.00 38.19 4.79
3515 3688 5.353956 TGAACCACCATTGATTTATCAGTCG 59.646 40.000 0.00 0.00 38.19 4.18
3516 3689 6.757897 TGAACCACCATTGATTTATCAGTC 57.242 37.500 0.00 0.00 38.19 3.51
3517 3690 7.396907 TGATTGAACCACCATTGATTTATCAGT 59.603 33.333 0.00 0.00 38.19 3.41
3518 3691 7.774134 TGATTGAACCACCATTGATTTATCAG 58.226 34.615 0.00 0.00 38.19 2.90
4024 4197 5.815740 CCTGATATGATGCATTGATCGATCA 59.184 40.000 23.99 23.99 31.48 2.92
4098 4271 2.049433 CCGTTCTCCGACAGCGTT 60.049 61.111 0.00 0.00 39.56 4.84
4500 4673 2.244117 CTGGCTACACCGTGGATGCT 62.244 60.000 3.03 0.00 43.94 3.79
4535 4708 2.195741 AATCCATCCATGCATCCGAG 57.804 50.000 0.00 0.00 0.00 4.63
4622 4811 1.078356 CATCTCAGCAGCTGCACCT 60.078 57.895 38.24 17.55 45.16 4.00
4736 4933 3.751175 ACAACACGACCATATCCAACTTG 59.249 43.478 0.00 0.00 0.00 3.16
4737 4934 3.751175 CACAACACGACCATATCCAACTT 59.249 43.478 0.00 0.00 0.00 2.66
4739 4936 3.071479 ACACAACACGACCATATCCAAC 58.929 45.455 0.00 0.00 0.00 3.77
4741 4938 4.160626 TCATACACAACACGACCATATCCA 59.839 41.667 0.00 0.00 0.00 3.41
4742 4939 4.506654 GTCATACACAACACGACCATATCC 59.493 45.833 0.00 0.00 0.00 2.59
4743 4940 4.506654 GGTCATACACAACACGACCATATC 59.493 45.833 0.00 0.00 44.55 1.63
4744 4941 4.439057 GGTCATACACAACACGACCATAT 58.561 43.478 0.00 0.00 44.55 1.78
4773 5384 3.433709 TTGACGAAAGAAAATCGCTCG 57.566 42.857 0.00 0.00 43.88 5.03
4775 5386 4.084013 ACGAATTGACGAAAGAAAATCGCT 60.084 37.500 0.00 0.00 43.88 4.93
4785 5396 3.063725 ACGGAAACAACGAATTGACGAAA 59.936 39.130 0.00 0.00 39.30 3.46
4792 5403 6.183360 ACAGTAGAAAACGGAAACAACGAATT 60.183 34.615 0.00 0.00 34.93 2.17
4796 5407 4.525411 ACAGTAGAAAACGGAAACAACG 57.475 40.909 0.00 0.00 37.36 4.10
4797 5408 7.025365 AGAAAACAGTAGAAAACGGAAACAAC 58.975 34.615 0.00 0.00 0.00 3.32
4804 5804 6.327154 ACCAAAAGAAAACAGTAGAAAACGG 58.673 36.000 0.00 0.00 0.00 4.44
5010 6013 7.268199 ACACAAAGATAGAACCATGCATATG 57.732 36.000 0.00 0.00 0.00 1.78
5015 6018 5.772521 ACAAACACAAAGATAGAACCATGC 58.227 37.500 0.00 0.00 0.00 4.06
5208 6498 8.673711 CGGTGAAAATTCTTAAATACCAGATGA 58.326 33.333 0.00 0.00 0.00 2.92
5227 6517 8.460428 AGAGTTGTTTTTAAATACACGGTGAAA 58.540 29.630 16.29 1.36 0.00 2.69
5293 6583 0.548031 GGGCCACATCTGATTCCTGA 59.452 55.000 4.39 0.00 0.00 3.86
5295 6585 0.549950 CTGGGCCACATCTGATTCCT 59.450 55.000 0.00 0.00 0.00 3.36
5307 6597 2.356741 GCCTATTTAGTTGTCTGGGCCA 60.357 50.000 5.85 5.85 33.07 5.36
5308 6598 2.298610 GCCTATTTAGTTGTCTGGGCC 58.701 52.381 0.00 0.00 33.07 5.80
5339 6629 2.036731 GTTGGGCCTGGTTACCCC 59.963 66.667 4.53 3.06 46.43 4.95
5347 6637 0.609131 AAACGATGGAGTTGGGCCTG 60.609 55.000 4.53 0.00 34.14 4.85
5353 6643 3.941483 AGGCTATTGAAACGATGGAGTTG 59.059 43.478 0.00 0.00 34.14 3.16
5372 6662 7.332678 TCGTGAGTATTTTAAAACCTAGAAGGC 59.667 37.037 1.97 0.00 39.63 4.35
5373 6663 8.767478 TCGTGAGTATTTTAAAACCTAGAAGG 57.233 34.615 1.97 0.00 42.49 3.46
5376 6666 9.932207 TCAATCGTGAGTATTTTAAAACCTAGA 57.068 29.630 1.97 4.17 0.00 2.43
5393 6683 3.431912 CCATCGTTTCAACTCAATCGTGA 59.568 43.478 0.00 0.00 0.00 4.35
5394 6684 3.431912 TCCATCGTTTCAACTCAATCGTG 59.568 43.478 0.00 0.00 0.00 4.35
5395 6685 3.659786 TCCATCGTTTCAACTCAATCGT 58.340 40.909 0.00 0.00 0.00 3.73
5396 6686 4.864916 ATCCATCGTTTCAACTCAATCG 57.135 40.909 0.00 0.00 0.00 3.34
5397 6687 5.801947 CCAAATCCATCGTTTCAACTCAATC 59.198 40.000 0.00 0.00 0.00 2.67
5398 6688 5.336690 CCCAAATCCATCGTTTCAACTCAAT 60.337 40.000 0.00 0.00 0.00 2.57
5399 6689 4.022416 CCCAAATCCATCGTTTCAACTCAA 60.022 41.667 0.00 0.00 0.00 3.02
5400 6690 3.505680 CCCAAATCCATCGTTTCAACTCA 59.494 43.478 0.00 0.00 0.00 3.41
5401 6691 3.756434 TCCCAAATCCATCGTTTCAACTC 59.244 43.478 0.00 0.00 0.00 3.01
5402 6692 3.506067 GTCCCAAATCCATCGTTTCAACT 59.494 43.478 0.00 0.00 0.00 3.16
5403 6693 3.254657 TGTCCCAAATCCATCGTTTCAAC 59.745 43.478 0.00 0.00 0.00 3.18
5404 6694 3.254657 GTGTCCCAAATCCATCGTTTCAA 59.745 43.478 0.00 0.00 0.00 2.69
5405 6695 2.817258 GTGTCCCAAATCCATCGTTTCA 59.183 45.455 0.00 0.00 0.00 2.69
5406 6696 2.817258 TGTGTCCCAAATCCATCGTTTC 59.183 45.455 0.00 0.00 0.00 2.78
5407 6697 2.556622 GTGTGTCCCAAATCCATCGTTT 59.443 45.455 0.00 0.00 0.00 3.60
5408 6698 2.159382 GTGTGTCCCAAATCCATCGTT 58.841 47.619 0.00 0.00 0.00 3.85
5409 6699 1.613255 GGTGTGTCCCAAATCCATCGT 60.613 52.381 0.00 0.00 0.00 3.73
5410 6700 1.094785 GGTGTGTCCCAAATCCATCG 58.905 55.000 0.00 0.00 0.00 3.84
5411 6701 1.094785 CGGTGTGTCCCAAATCCATC 58.905 55.000 0.00 0.00 0.00 3.51
5412 6702 0.695924 TCGGTGTGTCCCAAATCCAT 59.304 50.000 0.00 0.00 0.00 3.41
5413 6703 0.474614 TTCGGTGTGTCCCAAATCCA 59.525 50.000 0.00 0.00 0.00 3.41
5414 6704 1.165270 CTTCGGTGTGTCCCAAATCC 58.835 55.000 0.00 0.00 0.00 3.01
5415 6705 1.165270 CCTTCGGTGTGTCCCAAATC 58.835 55.000 0.00 0.00 0.00 2.17
5416 6706 0.768622 TCCTTCGGTGTGTCCCAAAT 59.231 50.000 0.00 0.00 0.00 2.32
5417 6707 0.179040 GTCCTTCGGTGTGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
5418 6708 1.052124 AGTCCTTCGGTGTGTCCCAA 61.052 55.000 0.00 0.00 0.00 4.12
5419 6709 1.458777 AGTCCTTCGGTGTGTCCCA 60.459 57.895 0.00 0.00 0.00 4.37
5420 6710 1.004918 CAGTCCTTCGGTGTGTCCC 60.005 63.158 0.00 0.00 0.00 4.46
5421 6711 0.106149 AACAGTCCTTCGGTGTGTCC 59.894 55.000 0.00 0.00 0.00 4.02
5422 6712 2.401351 GTAACAGTCCTTCGGTGTGTC 58.599 52.381 0.00 0.00 0.00 3.67
5423 6713 1.069668 GGTAACAGTCCTTCGGTGTGT 59.930 52.381 0.00 0.00 0.00 3.72
5424 6714 1.792006 GGTAACAGTCCTTCGGTGTG 58.208 55.000 0.00 0.00 0.00 3.82
5425 6715 0.316204 CGGTAACAGTCCTTCGGTGT 59.684 55.000 0.00 0.00 0.00 4.16
5426 6716 1.012486 GCGGTAACAGTCCTTCGGTG 61.012 60.000 0.00 0.00 0.00 4.94
5427 6717 1.183676 AGCGGTAACAGTCCTTCGGT 61.184 55.000 0.00 0.00 0.00 4.69
5428 6718 0.813184 TAGCGGTAACAGTCCTTCGG 59.187 55.000 0.00 0.00 0.00 4.30
5429 6719 2.642139 TTAGCGGTAACAGTCCTTCG 57.358 50.000 2.26 0.00 0.00 3.79
5450 6740 5.828328 CCTCAAGAACAGTCCTTAGGTTTTT 59.172 40.000 0.00 0.00 0.00 1.94
5451 6741 5.377478 CCTCAAGAACAGTCCTTAGGTTTT 58.623 41.667 0.00 0.00 0.00 2.43
5452 6742 4.747009 GCCTCAAGAACAGTCCTTAGGTTT 60.747 45.833 0.00 0.00 0.00 3.27
5453 6743 3.244596 GCCTCAAGAACAGTCCTTAGGTT 60.245 47.826 0.00 0.00 0.00 3.50
5454 6744 2.303311 GCCTCAAGAACAGTCCTTAGGT 59.697 50.000 0.00 0.00 0.00 3.08
5455 6745 2.303022 TGCCTCAAGAACAGTCCTTAGG 59.697 50.000 0.00 0.00 0.00 2.69
5456 6746 3.244215 TGTGCCTCAAGAACAGTCCTTAG 60.244 47.826 0.00 0.00 0.00 2.18
5457 6747 2.703536 TGTGCCTCAAGAACAGTCCTTA 59.296 45.455 0.00 0.00 0.00 2.69
5458 6748 1.490490 TGTGCCTCAAGAACAGTCCTT 59.510 47.619 0.00 0.00 0.00 3.36
5459 6749 1.131638 TGTGCCTCAAGAACAGTCCT 58.868 50.000 0.00 0.00 0.00 3.85
5460 6750 1.808945 CATGTGCCTCAAGAACAGTCC 59.191 52.381 0.00 0.00 0.00 3.85
5461 6751 2.771089 TCATGTGCCTCAAGAACAGTC 58.229 47.619 0.00 0.00 0.00 3.51
5462 6752 2.936919 TCATGTGCCTCAAGAACAGT 57.063 45.000 0.00 0.00 0.00 3.55
5463 6753 3.340928 TCATCATGTGCCTCAAGAACAG 58.659 45.455 0.00 0.00 0.00 3.16
5464 6754 3.421919 TCATCATGTGCCTCAAGAACA 57.578 42.857 0.00 0.00 0.00 3.18
5465 6755 3.755378 ACTTCATCATGTGCCTCAAGAAC 59.245 43.478 0.00 0.00 0.00 3.01
5466 6756 4.025040 ACTTCATCATGTGCCTCAAGAA 57.975 40.909 0.00 0.00 0.00 2.52
5467 6757 3.708403 ACTTCATCATGTGCCTCAAGA 57.292 42.857 0.00 0.00 0.00 3.02
5468 6758 3.754850 TCAACTTCATCATGTGCCTCAAG 59.245 43.478 0.00 0.00 0.00 3.02
5469 6759 3.753815 TCAACTTCATCATGTGCCTCAA 58.246 40.909 0.00 0.00 0.00 3.02
5470 6760 3.421919 TCAACTTCATCATGTGCCTCA 57.578 42.857 0.00 0.00 0.00 3.86
5471 6761 4.978083 ATTCAACTTCATCATGTGCCTC 57.022 40.909 0.00 0.00 0.00 4.70
5472 6762 5.948162 ACTTATTCAACTTCATCATGTGCCT 59.052 36.000 0.00 0.00 0.00 4.75
5473 6763 6.199937 ACTTATTCAACTTCATCATGTGCC 57.800 37.500 0.00 0.00 0.00 5.01
5474 6764 7.693951 GTGTACTTATTCAACTTCATCATGTGC 59.306 37.037 0.00 0.00 0.00 4.57
5475 6765 8.720562 TGTGTACTTATTCAACTTCATCATGTG 58.279 33.333 0.00 0.00 0.00 3.21
5476 6766 8.846943 TGTGTACTTATTCAACTTCATCATGT 57.153 30.769 0.00 0.00 0.00 3.21
5479 6769 9.500785 TCATTGTGTACTTATTCAACTTCATCA 57.499 29.630 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.