AutoCloner

Multiple sequence alignment - TraesCS2D01G264300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G264300	chr2D	100.000	4793	0	0	1	4793	323093018	323088226	0.000000e+00	8852
1	TraesCS2D01G264300	chr2D	80.000	635	68	20	4164	4793	391102251	391101671	9.600000e-112	414
2	TraesCS2D01G264300	chr2A	96.969	3629	99	5	545	4162	407372497	407376125	0.000000e+00	6082
3	TraesCS2D01G264300	chr2A	90.538	465	38	3	1	464	407371817	407372276	1.140000e-170	610
4	TraesCS2D01G264300	chr2A	91.358	81	6	1	467	547	407372363	407372442	5.070000e-20	110
5	TraesCS2D01G264300	chr2B	94.237	3731	176	23	466	4167	390945155	390941435	0.000000e+00	5662
6	TraesCS2D01G264300	chr2B	89.407	472	41	5	1	468	390945702	390945236	1.920000e-163	586
7	TraesCS2D01G264300	chr2B	82.266	609	58	18	4159	4764	543519758	543520319	9.330000e-132	481
8	TraesCS2D01G264300	chr3B	89.110	652	51	17	4153	4791	237322241	237321597	0.000000e+00	793
9	TraesCS2D01G264300	chr5A	86.862	647	61	15	4160	4793	665825099	665825734	0.000000e+00	702
10	TraesCS2D01G264300	chr5A	82.137	599	61	20	4230	4789	632820539	632819948	5.610000e-129	472
11	TraesCS2D01G264300	chr3D	86.350	652	62	15	4156	4793	596879395	596878757	0.000000e+00	686
12	TraesCS2D01G264300	chr3D	90.883	351	28	3	4160	4506	500634678	500634328	7.260000e-128	468
13	TraesCS2D01G264300	chr3D	91.189	227	17	2	4568	4793	565197595	565197371	6.030000e-79	305
14	TraesCS2D01G264300	chr3D	90.308	227	19	2	4568	4793	565244577	565244353	1.300000e-75	294
15	TraesCS2D01G264300	chr4D	86.164	636	65	14	4160	4793	54384700	54385314	0.000000e+00	665
16	TraesCS2D01G264300	chr5D	86.679	548	52	11	4162	4697	444716605	444716067	5.340000e-164	588
17	TraesCS2D01G264300	chr5D	85.681	426	45	12	4162	4579	510164632	510165049	7.370000e-118	435
18	TraesCS2D01G264300	chr6D	84.725	491	43	16	4160	4619	24895095	24894606	3.380000e-126	462
19	TraesCS2D01G264300	chr4B	83.824	272	29	9	4536	4793	500269768	500270038	1.330000e-60	244

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G264300	chr2D	323088226	323093018	4792	True	8852.000000	8852	100.000	1	4793	1	chr2D.!!$R1	4792
1	TraesCS2D01G264300	chr2D	391101671	391102251	580	True	414.000000	414	80.000	4164	4793	1	chr2D.!!$R2	629
2	TraesCS2D01G264300	chr2A	407371817	407376125	4308	False	2267.333333	6082	92.955	1	4162	3	chr2A.!!$F1	4161
3	TraesCS2D01G264300	chr2B	390941435	390945702	4267	True	3124.000000	5662	91.822	1	4167	2	chr2B.!!$R1	4166
4	TraesCS2D01G264300	chr2B	543519758	543520319	561	False	481.000000	481	82.266	4159	4764	1	chr2B.!!$F1	605
5	TraesCS2D01G264300	chr3B	237321597	237322241	644	True	793.000000	793	89.110	4153	4791	1	chr3B.!!$R1	638
6	TraesCS2D01G264300	chr5A	665825099	665825734	635	False	702.000000	702	86.862	4160	4793	1	chr5A.!!$F1	633
7	TraesCS2D01G264300	chr5A	632819948	632820539	591	True	472.000000	472	82.137	4230	4789	1	chr5A.!!$R1	559
8	TraesCS2D01G264300	chr3D	596878757	596879395	638	True	686.000000	686	86.350	4156	4793	1	chr3D.!!$R4	637
9	TraesCS2D01G264300	chr4D	54384700	54385314	614	False	665.000000	665	86.164	4160	4793	1	chr4D.!!$F1	633
10	TraesCS2D01G264300	chr5D	444716067	444716605	538	True	588.000000	588	86.679	4162	4697	1	chr5D.!!$R1	535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
454	459	0.038892	GCCGTGACGAGTAAGGAACA	60.039	55.000	6.54	0.00	0.00	3.18	F
656	810	2.749621	GTTTCTGCAGGATTTCCACGAT	59.250	45.455	15.13	0.00	38.89	3.73	F
1964	2119	0.320374	CCAACGGTCCTCTGCAAGTA	59.680	55.000	0.00	0.00	33.76	2.24	F
2419	2574	0.244994	ATAGCGATCCGGTGATCAGC	59.755	55.000	15.01	15.01	46.50	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1543	1698	1.896220	TGTTCTTGCTGCCTAACCTG	58.104	50.0	0.00	0.00	4.00	R
2064	2219	1.901591	ATAATGCCCTGAATCCGCAG	58.098	50.0	0.00	35.66	5.18	R
3772	3943	2.417933	CTCACTGCGATTTTTCCTCCAG	59.582	50.0	0.00	0.00	3.86	R
4340	4522	1.176619	TTGACGCGAGGAAGAGGACA	61.177	55.0	15.93	0.00	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
88	89	1.992667	TCTCGTGCAAATCGTGACATC	59.007	47.619	0.00	0.00	0.00	3.06
89	90	1.726248	CTCGTGCAAATCGTGACATCA	59.274	47.619	0.00	0.00	0.00	3.07
132	135	2.352805	CTTCGCTTGCTTCCCCCT	59.647	61.111	0.00	0.00	0.00	4.79
193	198	2.359531	GGTTGAGGTGTAGGATCTCTCG	59.640	54.545	0.00	0.00	0.00	4.04
216	221	6.420903	TCGAATCTCAATAATTGTGATCGGAC	59.579	38.462	12.00	0.00	41.50	4.79
221	226	5.359756	TCAATAATTGTGATCGGACTCAGG	58.640	41.667	0.00	0.00	0.00	3.86
230	235	1.639722	TCGGACTCAGGGACATCAAA	58.360	50.000	0.00	0.00	0.00	2.69
253	258	1.202348	CCCTTTCGGTTTGGATCTTGC	59.798	52.381	0.00	0.00	0.00	4.01
256	261	0.610785	TTCGGTTTGGATCTTGCCCC	60.611	55.000	0.00	0.00	0.00	5.80
259	264	1.186200	GGTTTGGATCTTGCCCCTTC	58.814	55.000	0.00	0.00	0.00	3.46
294	299	7.547697	TGCAAGGTACTAGTATATATTGGCA	57.452	36.000	5.75	7.48	38.49	4.92
329	334	5.412904	AGTCTATCAACTTAGGTTTGCTTGC	59.587	40.000	0.00	0.00	32.73	4.01
339	344	3.981211	AGGTTTGCTTGCACTTGTTATG	58.019	40.909	0.00	0.00	0.00	1.90
391	396	3.888323	TGCTTTGTTCTTGCATGGAACTA	59.112	39.130	23.87	17.76	42.27	2.24
404	409	9.853555	CTTGCATGGAACTAAATATTTTGTACA	57.146	29.630	14.33	15.49	0.00	2.90
405	410	9.853555	TTGCATGGAACTAAATATTTTGTACAG	57.146	29.630	14.33	4.83	0.00	2.74
406	411	9.019656	TGCATGGAACTAAATATTTTGTACAGT	57.980	29.630	14.33	5.41	0.00	3.55
423	428	6.646267	TGTACAGTACCTGTTTTCAGTTTCT	58.354	36.000	8.30	0.00	42.59	2.52
425	430	4.881850	ACAGTACCTGTTTTCAGTTTCTGG	59.118	41.667	0.00	0.00	42.59	3.86
427	432	5.357032	CAGTACCTGTTTTCAGTTTCTGGTT	59.643	40.000	0.00	0.00	45.68	3.67
431	436	7.039313	ACCTGTTTTCAGTTTCTGGTTAATC	57.961	36.000	0.00	0.00	45.68	1.75
442	447	2.429610	TCTGGTTAATCTAGGCCGTGAC	59.570	50.000	0.00	0.00	0.00	3.67
445	450	2.543238	GGTTAATCTAGGCCGTGACGAG	60.543	54.545	6.54	0.00	0.00	4.18
453	458	0.735287	GGCCGTGACGAGTAAGGAAC	60.735	60.000	6.54	0.00	0.00	3.62
454	459	0.038892	GCCGTGACGAGTAAGGAACA	60.039	55.000	6.54	0.00	0.00	3.18
505	594	7.481275	ACAATTAATGGTTGCTTTTTGACTG	57.519	32.000	0.00	0.00	0.00	3.51
511	600	5.398603	TGGTTGCTTTTTGACTGAAAAGA	57.601	34.783	12.75	0.00	45.20	2.52
522	611	7.985634	TTTGACTGAAAAGATAACTGCAAAC	57.014	32.000	0.00	0.00	0.00	2.93
599	752	9.037737	CATTTCAAGTCAAGATTTCACATGTTT	57.962	29.630	0.00	0.00	0.00	2.83
656	810	2.749621	GTTTCTGCAGGATTTCCACGAT	59.250	45.455	15.13	0.00	38.89	3.73
659	813	3.531538	TCTGCAGGATTTCCACGATTAC	58.468	45.455	15.13	0.00	38.89	1.89
784	938	6.930164	TGCAACAATTCTGCAATCAACTTATT	59.070	30.769	8.89	0.00	46.47	1.40
871	1025	6.730960	TGTTGATTACGGTTAATTGAGGAC	57.269	37.500	0.00	0.00	0.00	3.85
1047	1201	4.897076	TCCTCTACTACACAACAGAAACCA	59.103	41.667	0.00	0.00	0.00	3.67
1119	1274	6.959361	TCTTTGTTTGAGCTGACAACTAATC	58.041	36.000	0.00	0.00	35.66	1.75
1120	1275	6.542005	TCTTTGTTTGAGCTGACAACTAATCA	59.458	34.615	0.00	0.00	35.66	2.57
1161	1316	4.245308	TCCCCTTTTGTACTTTAGGAGGT	58.755	43.478	8.67	0.00	0.00	3.85
1345	1500	4.610605	AGAATGCTGGAGATCTGATGAG	57.389	45.455	0.00	0.00	0.00	2.90
1543	1698	6.678900	GCAATACAGATGTTGAAGAATCCACC	60.679	42.308	0.00	0.00	0.00	4.61
1565	1720	1.269723	GGTTAGGCAGCAAGAACAACC	59.730	52.381	0.00	0.00	0.00	3.77
1594	1749	4.842531	TTTTGATGCCTCATCTGACCTA	57.157	40.909	8.11	0.00	41.06	3.08
1834	1989	1.468520	AGTGGCGATGAAACAAATCGG	59.531	47.619	7.80	0.00	45.48	4.18
1892	2047	3.096852	TCTTCGCCAGGTATCTCTGAAA	58.903	45.455	0.00	0.00	36.93	2.69
1964	2119	0.320374	CCAACGGTCCTCTGCAAGTA	59.680	55.000	0.00	0.00	33.76	2.24
2064	2219	0.455633	CATCAAGTTGCCGCTTGCTC	60.456	55.000	11.19	0.00	43.92	4.26
2089	2244	3.381272	CGGATTCAGGGCATTATTGTGTT	59.619	43.478	0.00	0.00	0.00	3.32
2135	2290	3.759086	GAGGGAAGAGAAATTGTGGAACC	59.241	47.826	0.00	0.00	34.36	3.62
2202	2357	6.712547	CCTAATTTGAAGAACCTGTCTGACTT	59.287	38.462	9.51	0.00	36.40	3.01
2233	2388	2.565841	AGTGAGGAAGCTGAACACAAC	58.434	47.619	13.27	0.00	34.47	3.32
2407	2562	6.866010	TCTGCATCAACAAAATATAGCGAT	57.134	33.333	0.00	0.00	0.00	4.58
2408	2563	6.891624	TCTGCATCAACAAAATATAGCGATC	58.108	36.000	0.00	0.00	0.00	3.69
2419	2574	0.244994	ATAGCGATCCGGTGATCAGC	59.755	55.000	15.01	15.01	46.50	4.26
2509	2664	6.581171	AAATTGACTCCTGTTTCTTCATCC	57.419	37.500	0.00	0.00	0.00	3.51
2768	2923	3.064207	TCACATGTTAAGCCTGTCGAAC	58.936	45.455	0.00	0.00	0.00	3.95
2816	2971	5.362556	TTAGAGAACTAACACGCTTACGT	57.637	39.130	0.00	0.00	42.28	3.57
2968	3123	2.362120	GGTGCTCTGGGCTTGCAT	60.362	61.111	0.00	0.00	42.39	3.96
3008	3176	7.916077	ACTAGTTAATATGTAGGCTGTCCTT	57.084	36.000	0.00	0.00	40.66	3.36
3130	3301	3.376234	CAGTCCAGTGCATAACATGGAAG	59.624	47.826	0.00	3.17	43.22	3.46
3132	3303	2.026641	CCAGTGCATAACATGGAAGGG	58.973	52.381	0.00	0.00	34.60	3.95
3135	3306	3.129287	CAGTGCATAACATGGAAGGGTTC	59.871	47.826	0.00	0.00	30.45	3.62
3175	3346	5.123820	GCACCATACTCTTGCAGTTAATGAA	59.876	40.000	0.00	0.00	36.43	2.57
3213	3384	5.651530	AGATTTGCTTGCTTCTCATTGATG	58.348	37.500	0.00	0.00	0.00	3.07
3686	3857	1.115326	GGCCCTTTGGTGAAGCAGTT	61.115	55.000	0.00	0.00	33.84	3.16
3806	3977	1.472201	GCAGTGAGATCATCCGAGCAA	60.472	52.381	0.00	0.00	0.00	3.91
4129	4309	3.195610	CCTTTTCCTACCCAAAATCAGGC	59.804	47.826	0.00	0.00	0.00	4.85
4288	4469	7.120716	ACCCTGTATAATCAACCCGTAAAAAT	58.879	34.615	0.00	0.00	0.00	1.82
4290	4471	9.292195	CCCTGTATAATCAACCCGTAAAAATAT	57.708	33.333	0.00	0.00	0.00	1.28
4372	4554	2.577059	GTCAATCCGGCGGACAGA	59.423	61.111	33.71	27.61	32.98	3.41
4373	4555	1.144057	GTCAATCCGGCGGACAGAT	59.856	57.895	33.71	13.27	32.98	2.90
4735	4974	2.436417	CGGGAGCAAAGATTCCTCAAA	58.564	47.619	0.00	0.00	33.85	2.69
4736	4975	2.819608	CGGGAGCAAAGATTCCTCAAAA	59.180	45.455	0.00	0.00	33.85	2.44
4738	4977	3.829026	GGGAGCAAAGATTCCTCAAAAGT	59.171	43.478	0.00	0.00	33.85	2.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	0.179240	CACGATTTGCACGAGACAGC	60.179	55.000	1.86	0.00	34.70	4.40
88	89	3.343941	TTTTCCTGTATCCCCGTTCTG	57.656	47.619	0.00	0.00	0.00	3.02
132	135	1.618837	CACTTTCTCTCCTCCCGTGAA	59.381	52.381	0.00	0.00	0.00	3.18
169	174	2.359531	GAGATCCTACACCTCAACCTCG	59.640	54.545	0.00	0.00	0.00	4.63
171	176	3.637769	GAGAGATCCTACACCTCAACCT	58.362	50.000	0.00	0.00	0.00	3.50
193	198	7.439356	TGAGTCCGATCACAATTATTGAGATTC	59.561	37.037	16.51	11.25	40.33	2.52
253	258	0.032540	GCAAGTTGCAACAGAAGGGG	59.967	55.000	30.11	12.30	44.26	4.79
294	299	8.478877	CCTAAGTTGATAGACTCCACAGTTATT	58.521	37.037	0.00	0.00	30.63	1.40
299	304	5.923733	ACCTAAGTTGATAGACTCCACAG	57.076	43.478	0.00	0.00	0.00	3.66
329	334	5.863935	TGTTCGACTGAGATCATAACAAGTG	59.136	40.000	0.00	0.00	0.00	3.16
339	344	2.257894	CACTGCTGTTCGACTGAGATC	58.742	52.381	0.00	0.00	0.00	2.75
404	409	5.112129	ACCAGAAACTGAAAACAGGTACT	57.888	39.130	0.00	0.00	33.03	2.73
405	410	5.830000	AACCAGAAACTGAAAACAGGTAC	57.170	39.130	0.00	0.00	32.44	3.34
406	411	7.996644	AGATTAACCAGAAACTGAAAACAGGTA	59.003	33.333	0.00	0.00	32.44	3.08
407	412	6.833933	AGATTAACCAGAAACTGAAAACAGGT	59.166	34.615	0.00	0.00	32.44	4.00
408	413	7.277174	AGATTAACCAGAAACTGAAAACAGG	57.723	36.000	0.00	0.00	32.44	4.00
409	414	8.507249	CCTAGATTAACCAGAAACTGAAAACAG	58.493	37.037	0.00	0.00	32.44	3.16
413	418	5.944007	GGCCTAGATTAACCAGAAACTGAAA	59.056	40.000	0.00	0.00	32.44	2.69
423	428	1.135527	CGTCACGGCCTAGATTAACCA	59.864	52.381	0.00	0.00	0.00	3.67
425	430	2.098770	ACTCGTCACGGCCTAGATTAAC	59.901	50.000	0.00	0.00	0.00	2.01
427	432	2.048444	ACTCGTCACGGCCTAGATTA	57.952	50.000	0.00	0.00	0.00	1.75
431	436	0.381089	CCTTACTCGTCACGGCCTAG	59.619	60.000	0.00	0.00	0.00	3.02
468	557	9.421806	CAACCATTAATTGTTGATGTACACAAT	57.578	29.630	21.95	0.17	43.50	2.71
522	611	3.665745	ATACAGCAAAAGGCCAAACTG	57.334	42.857	5.01	7.64	46.50	3.16
527	616	6.484288	AGCATATATATACAGCAAAAGGCCA	58.516	36.000	5.01	0.00	46.50	5.36
567	713	7.706179	GTGAAATCTTGACTTGAAATGTTCCAA	59.294	33.333	0.00	0.00	0.00	3.53
599	752	0.469494	ATCTGGCACGCATCATACCA	59.531	50.000	0.00	0.00	0.00	3.25
656	810	3.737559	ATTCCAGGAGGTTGCATGTAA	57.262	42.857	0.00	0.00	35.89	2.41
659	813	3.118112	AGACTATTCCAGGAGGTTGCATG	60.118	47.826	0.00	0.00	35.89	4.06
784	938	0.833287	GATTACTCCCAGAGGCAGCA	59.167	55.000	0.00	0.00	33.35	4.41
871	1025	4.959596	AATTGTTACATCTCAGCTGCTG	57.040	40.909	23.31	23.31	0.00	4.41
1014	1168	6.299805	TGTGTAGTAGAGGATGAAAAGCAT	57.700	37.500	0.00	0.00	40.77	3.79
1047	1201	9.646522	AATACATCAGCTATTTTCCATACCTTT	57.353	29.630	0.00	0.00	0.00	3.11
1081	1235	8.275632	GCTCAAACAAAGAATACAATTGGAAAC	58.724	33.333	10.83	0.00	0.00	2.78
1119	1274	6.156775	AGGGGAACAAAGATATTTGGGAAATG	59.843	38.462	16.65	0.00	36.30	2.32
1120	1275	6.271537	AGGGGAACAAAGATATTTGGGAAAT	58.728	36.000	16.65	0.00	36.30	2.17
1345	1500	3.250280	CAGAGCATGCATGTCTATTCCAC	59.750	47.826	26.79	11.45	0.00	4.02
1468	1623	9.201127	CTGTAATCATGGTCTGTAATATCACAG	57.799	37.037	0.00	0.00	46.04	3.66
1543	1698	1.896220	TGTTCTTGCTGCCTAACCTG	58.104	50.000	0.00	0.00	0.00	4.00
1565	1720	5.805486	CAGATGAGGCATCAAAAACATTCTG	59.195	40.000	4.62	8.30	42.72	3.02
1594	1749	6.248433	AGGTTCATAAACACCATGACTGATT	58.752	36.000	0.00	0.00	37.10	2.57
1834	1989	3.121778	GCACAGGCAAATTTGATTTCGAC	59.878	43.478	22.31	1.89	40.72	4.20
1892	2047	4.536090	TGAACCATCCTCCAAGTCTAATGT	59.464	41.667	0.00	0.00	0.00	2.71
1964	2119	5.779241	TCCCTCACAAACTTTCCATCTAT	57.221	39.130	0.00	0.00	0.00	1.98
2064	2219	1.901591	ATAATGCCCTGAATCCGCAG	58.098	50.000	0.00	0.00	35.66	5.18
2089	2244	8.806429	TCTCTTGATTTAAAGCACCATTGATA	57.194	30.769	5.47	0.00	0.00	2.15
2135	2290	2.869354	GGTCGAGACCGCTATTTCG	58.131	57.895	6.51	0.00	42.29	3.46
2202	2357	5.899547	TCAGCTTCCTCACTAATATCCTTCA	59.100	40.000	0.00	0.00	0.00	3.02
2233	2388	4.395854	TGATCACCATTCATTCCAGTTTCG	59.604	41.667	0.00	0.00	0.00	3.46
2407	2562	1.972198	AGAAACGCTGATCACCGGA	59.028	52.632	9.46	0.00	0.00	5.14
2408	2563	4.598257	AGAAACGCTGATCACCGG	57.402	55.556	14.56	0.00	0.00	5.28
2675	2830	6.353082	CCCCAGGTGTTAGAGAAATTGATAGT	60.353	42.308	0.00	0.00	0.00	2.12
2677	2832	5.491078	ACCCCAGGTGTTAGAGAAATTGATA	59.509	40.000	0.00	0.00	32.98	2.15
2694	2849	0.468029	ACTGTGCAGAAAACCCCAGG	60.468	55.000	6.17	0.00	0.00	4.45
2726	2881	0.608640	GACCTTTCGGAAGAGCTCCA	59.391	55.000	10.93	0.00	45.74	3.86
2816	2971	7.973402	TCCTATTATAGCTTATGTCCAGCAAA	58.027	34.615	0.00	0.00	39.99	3.68
3130	3301	7.821846	TGGTGCAATTTTATTAAGAATGAACCC	59.178	33.333	8.83	0.00	0.00	4.11
3175	3346	9.503427	GCAAGCAAATCTATTCGTTTTATACTT	57.497	29.630	0.00	0.00	0.00	2.24
3213	3384	6.020971	CCTAAAAGGTGTCCCAAAACATAC	57.979	41.667	0.00	0.00	0.00	2.39
3686	3857	2.668632	GCATGTTCCGGGACCTCA	59.331	61.111	11.33	0.00	0.00	3.86
3772	3943	2.417933	CTCACTGCGATTTTTCCTCCAG	59.582	50.000	0.00	0.00	0.00	3.86
3829	4000	4.311816	ACTTGCAACATCCTTGTTCAAG	57.688	40.909	18.58	18.58	44.24	3.02
3938	4109	3.377485	CACTGCCACGTAGTACTATGACT	59.623	47.826	25.55	4.44	41.61	3.41
4129	4309	2.093869	CCTGTGCAAAATGATTCCCCAG	60.094	50.000	0.00	0.00	0.00	4.45
4191	4372	6.594788	ACTGTAAAAGACTTATACGGGTCA	57.405	37.500	0.00	0.00	35.18	4.02
4290	4471	8.467598	GTCTGCTCGGTATATTTGGAGAATATA	58.532	37.037	0.00	0.00	0.00	0.86
4311	4492	1.441311	GAGCTAGCTCTGGGTCTGC	59.559	63.158	32.98	7.95	39.80	4.26
4340	4522	1.176619	TTGACGCGAGGAAGAGGACA	61.177	55.000	15.93	0.00	0.00	4.02
4372	4554	1.740296	CGCGTTTTCCCTCGTCCAT	60.740	57.895	0.00	0.00	0.00	3.41
4373	4555	2.356553	CGCGTTTTCCCTCGTCCA	60.357	61.111	0.00	0.00	0.00	4.02
4492	4701	3.417167	TAGCTAGCTCGACCCGGCT	62.417	63.158	23.26	2.26	41.92	5.52
4552	4774	3.118629	AGCTAGCTCAATCCATTCGAACA	60.119	43.478	12.68	0.00	0.00	3.18
4738	4977	0.033642	TGCATACCGGTCAACGTTGA	59.966	50.000	26.53	26.53	42.24	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.