Multiple sequence alignment - TraesCS2D01G264200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G264200 chr2D 100.000 5270 0 0 1 5270 323073705 323078974 0.000000e+00 9732.0
1 TraesCS2D01G264200 chr2D 85.311 354 44 8 4721 5070 323078774 323078425 5.020000e-95 359.0
2 TraesCS2D01G264200 chr2D 84.173 139 22 0 1001 1139 166610516 166610378 9.210000e-28 135.0
3 TraesCS2D01G264200 chr2A 93.023 1849 67 27 1 1810 407743633 407741808 0.000000e+00 2643.0
4 TraesCS2D01G264200 chr2A 96.497 1399 23 11 3066 4456 407740648 407739268 0.000000e+00 2289.0
5 TraesCS2D01G264200 chr2A 91.051 771 24 12 1890 2640 407741811 407741066 0.000000e+00 1000.0
6 TraesCS2D01G264200 chr2A 91.932 409 33 0 4862 5270 407738879 407738471 1.650000e-159 573.0
7 TraesCS2D01G264200 chr2A 92.188 320 12 6 2681 2996 407740984 407740674 1.740000e-119 440.0
8 TraesCS2D01G264200 chr2A 92.063 252 11 2 4478 4721 407739127 407738877 3.910000e-91 346.0
9 TraesCS2D01G264200 chr2A 84.753 223 32 2 5050 5270 232593149 232592927 6.870000e-54 222.0
10 TraesCS2D01G264200 chr2A 86.029 136 19 0 1001 1136 183549660 183549795 4.250000e-31 147.0
11 TraesCS2D01G264200 chr2B 97.174 1380 29 5 3081 4456 390925436 390926809 0.000000e+00 2324.0
12 TraesCS2D01G264200 chr2B 92.554 967 32 15 853 1810 390923168 390924103 0.000000e+00 1351.0
13 TraesCS2D01G264200 chr2B 85.357 840 43 27 1 826 390920214 390920987 0.000000e+00 797.0
14 TraesCS2D01G264200 chr2B 95.133 452 18 3 2075 2526 390924243 390924690 0.000000e+00 710.0
15 TraesCS2D01G264200 chr2B 93.462 413 26 1 4859 5270 390938503 390938915 3.490000e-171 612.0
16 TraesCS2D01G264200 chr2B 90.848 448 20 9 2645 3078 390924920 390925360 9.840000e-162 580.0
17 TraesCS2D01G264200 chr2B 94.558 147 5 1 1890 2033 390924100 390924246 1.910000e-54 224.0
18 TraesCS2D01G264200 chr2B 92.481 133 9 1 4730 4861 390938706 390938574 6.970000e-44 189.0
19 TraesCS2D01G264200 chr2B 84.615 182 26 2 5007 5187 724246576 724246396 4.190000e-41 180.0
20 TraesCS2D01G264200 chr2B 88.281 128 11 2 4589 4716 390938381 390938504 3.290000e-32 150.0
21 TraesCS2D01G264200 chr2B 84.173 139 22 0 998 1136 231232744 231232882 9.210000e-28 135.0
22 TraesCS2D01G264200 chr2B 93.671 79 4 1 4475 4552 390926872 390926950 3.330000e-22 117.0
23 TraesCS2D01G264200 chr2B 97.619 42 1 0 4544 4585 390929763 390929804 7.320000e-09 73.1
24 TraesCS2D01G264200 chr2B 100.000 37 0 0 2575 2611 390924813 390924849 9.470000e-08 69.4
25 TraesCS2D01G264200 chr3A 85.460 1066 147 6 3166 4226 706922886 706923948 0.000000e+00 1103.0
26 TraesCS2D01G264200 chr3A 83.038 1073 173 7 3164 4233 706851448 706852514 0.000000e+00 965.0
27 TraesCS2D01G264200 chr3B 85.230 1063 154 1 3164 4226 761936951 761938010 0.000000e+00 1090.0
28 TraesCS2D01G264200 chr3B 83.225 1073 171 7 3164 4233 761902289 761903355 0.000000e+00 976.0
29 TraesCS2D01G264200 chr3D 84.854 1063 158 1 3164 4226 572046001 572044942 0.000000e+00 1068.0
30 TraesCS2D01G264200 chr3D 83.411 1073 169 7 3164 4233 572101761 572100695 0.000000e+00 987.0
31 TraesCS2D01G264200 chr3D 82.752 1061 179 2 3161 4220 572085476 572084419 0.000000e+00 942.0
32 TraesCS2D01G264200 chr3D 82.713 376 53 7 4906 5270 185721095 185721469 1.830000e-84 324.0
33 TraesCS2D01G264200 chr3D 77.725 422 73 15 4865 5270 433418964 433418548 6.820000e-59 239.0
34 TraesCS2D01G264200 chr7D 84.652 417 48 13 4868 5270 190377116 190376702 8.220000e-108 401.0
35 TraesCS2D01G264200 chr7D 82.850 414 56 10 4868 5268 274681324 274681735 1.800000e-94 357.0
36 TraesCS2D01G264200 chr7D 95.506 89 4 0 1806 1894 426558896 426558984 5.500000e-30 143.0
37 TraesCS2D01G264200 chr7B 81.159 414 63 10 4868 5268 263242089 263241678 8.520000e-83 318.0
38 TraesCS2D01G264200 chr1A 80.307 391 65 9 4890 5270 521947078 521947466 8.640000e-73 285.0
39 TraesCS2D01G264200 chr1A 95.506 89 4 0 1810 1898 531230066 531229978 5.500000e-30 143.0
40 TraesCS2D01G264200 chr5D 92.929 99 6 1 1805 1903 382868499 382868402 5.500000e-30 143.0
41 TraesCS2D01G264200 chr5D 91.176 102 8 1 1794 1894 325894286 325894387 2.560000e-28 137.0
42 TraesCS2D01G264200 chr4D 93.750 96 5 1 1805 1900 333063270 333063364 5.500000e-30 143.0
43 TraesCS2D01G264200 chr4D 95.556 90 3 1 1808 1897 478671937 478671849 5.500000e-30 143.0
44 TraesCS2D01G264200 chr4B 96.512 86 3 0 1809 1894 106975942 106975857 5.500000e-30 143.0
45 TraesCS2D01G264200 chr7A 90.385 104 8 2 1793 1894 636899689 636899792 9.210000e-28 135.0
46 TraesCS2D01G264200 chr4A 91.089 101 7 2 1806 1905 685751185 685751086 9.210000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G264200 chr2D 323073705 323078974 5269 False 9732.000000 9732 100.000000 1 5270 1 chr2D.!!$F1 5269
1 TraesCS2D01G264200 chr2A 407738471 407743633 5162 True 1215.166667 2643 92.792333 1 5270 6 chr2A.!!$R2 5269
2 TraesCS2D01G264200 chr2B 390920214 390929804 9590 False 693.944444 2324 94.101556 1 4585 9 chr2B.!!$F2 4584
3 TraesCS2D01G264200 chr2B 390938381 390938915 534 False 381.000000 612 90.871500 4589 5270 2 chr2B.!!$F3 681
4 TraesCS2D01G264200 chr3A 706922886 706923948 1062 False 1103.000000 1103 85.460000 3166 4226 1 chr3A.!!$F2 1060
5 TraesCS2D01G264200 chr3A 706851448 706852514 1066 False 965.000000 965 83.038000 3164 4233 1 chr3A.!!$F1 1069
6 TraesCS2D01G264200 chr3B 761936951 761938010 1059 False 1090.000000 1090 85.230000 3164 4226 1 chr3B.!!$F2 1062
7 TraesCS2D01G264200 chr3B 761902289 761903355 1066 False 976.000000 976 83.225000 3164 4233 1 chr3B.!!$F1 1069
8 TraesCS2D01G264200 chr3D 572044942 572046001 1059 True 1068.000000 1068 84.854000 3164 4226 1 chr3D.!!$R2 1062
9 TraesCS2D01G264200 chr3D 572100695 572101761 1066 True 987.000000 987 83.411000 3164 4233 1 chr3D.!!$R4 1069
10 TraesCS2D01G264200 chr3D 572084419 572085476 1057 True 942.000000 942 82.752000 3161 4220 1 chr3D.!!$R3 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 628 0.454600 AGACGAACGAGTGTGTGTGT 59.545 50.0 0.14 0.0 0.00 3.72 F
2180 4383 0.316204 GCATGTGCAAAGTCCAAGCT 59.684 50.0 0.00 0.0 41.59 3.74 F
2636 4960 0.036105 AGGATTCACGTGCATGCAGA 60.036 50.0 23.41 12.7 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2233 4436 0.034089 GCATCAAAGTGGGCCCTACT 60.034 55.000 25.7 21.2 0.00 2.57 R
3169 5615 0.251474 AGGTACACCGGCACAGACTA 60.251 55.000 0.0 0.0 42.08 2.59 R
4356 6811 1.263217 CACACGGTTTGACCTAAGCAC 59.737 52.381 0.0 0.0 35.66 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.106074 TTAGCGGCCGACTTGCATG 61.106 57.895 33.48 0.00 0.00 4.06
131 140 5.753744 GATCGATCGATATACTGACCATCC 58.246 45.833 29.45 9.45 34.60 3.51
132 141 3.945921 TCGATCGATATACTGACCATCCC 59.054 47.826 15.15 0.00 0.00 3.85
133 142 3.694566 CGATCGATATACTGACCATCCCA 59.305 47.826 10.26 0.00 0.00 4.37
134 143 4.339530 CGATCGATATACTGACCATCCCAT 59.660 45.833 10.26 0.00 0.00 4.00
183 192 2.609459 GCACACGAGATACCCTTGAATG 59.391 50.000 0.00 0.00 0.00 2.67
248 257 6.183360 TGCAGTAAAGCACCCAAAAAGATTTA 60.183 34.615 0.00 0.00 40.11 1.40
273 282 1.115467 GACTCACCATCACGAGGGAT 58.885 55.000 4.46 0.00 35.92 3.85
293 302 4.398044 GGATCCGCCAATTTCTTGTAGAAA 59.602 41.667 0.00 4.51 41.48 2.52
301 310 7.378181 GCCAATTTCTTGTAGAAAATTCTCCA 58.622 34.615 6.01 0.00 46.08 3.86
511 530 4.336889 TCAGACGATTCTTTGGACTTGT 57.663 40.909 0.00 0.00 0.00 3.16
599 628 0.454600 AGACGAACGAGTGTGTGTGT 59.545 50.000 0.14 0.00 0.00 3.72
600 629 0.570734 GACGAACGAGTGTGTGTGTG 59.429 55.000 0.14 0.00 0.00 3.82
604 633 2.131972 GAACGAGTGTGTGTGTGCATA 58.868 47.619 0.00 0.00 0.00 3.14
629 658 8.642908 AATGTATGCATGTGATTGAATTTGAG 57.357 30.769 10.16 0.00 35.15 3.02
634 663 4.328983 GCATGTGATTGAATTTGAGCCAAG 59.671 41.667 0.00 0.00 0.00 3.61
635 664 5.716094 CATGTGATTGAATTTGAGCCAAGA 58.284 37.500 0.00 0.00 0.00 3.02
685 714 3.383185 TCAAAACCTAGCAACCAACTTGG 59.617 43.478 6.24 6.24 45.02 3.61
796 825 3.258722 AGTCCCAATTTTGACCACCAT 57.741 42.857 1.42 0.00 31.76 3.55
828 868 2.182842 CCGCTTGCATGCTACTCCC 61.183 63.158 20.33 0.55 0.00 4.30
944 3127 2.899900 TCCCATACCTCCTTGATCATCG 59.100 50.000 0.00 0.00 0.00 3.84
1035 3218 4.955774 GTGAACACGTCCGGCGGT 62.956 66.667 27.32 4.66 46.52 5.68
1119 3302 2.167281 CGGCCTCATCTTCGGATATGAT 59.833 50.000 0.00 0.00 31.95 2.45
1125 3308 5.188327 TCATCTTCGGATATGATATCGGC 57.812 43.478 13.34 0.00 32.70 5.54
1135 3318 5.536538 GGATATGATATCGGCATCTCAGGTA 59.463 44.000 6.38 0.00 0.00 3.08
1152 3335 2.058798 GGTATGTACATGGATCACGCG 58.941 52.381 18.81 3.53 0.00 6.01
1153 3336 1.455786 GTATGTACATGGATCACGCGC 59.544 52.381 18.81 0.00 0.00 6.86
1154 3337 0.880278 ATGTACATGGATCACGCGCC 60.880 55.000 7.78 0.00 0.00 6.53
1155 3338 2.108157 TACATGGATCACGCGCCC 59.892 61.111 5.73 2.87 0.00 6.13
1156 3339 2.726351 TACATGGATCACGCGCCCA 61.726 57.895 5.73 9.48 0.00 5.36
1157 3340 2.916502 TACATGGATCACGCGCCCAC 62.917 60.000 5.73 0.00 32.07 4.61
1219 3402 3.982701 TGTGTTGATTTCCTACGTACGTG 59.017 43.478 30.25 18.87 0.00 4.49
1318 3501 0.676782 GCTCCGCCAACCAATACTGT 60.677 55.000 0.00 0.00 0.00 3.55
1510 3693 2.969238 GCCATGCTCATCGTCGGG 60.969 66.667 0.00 0.00 0.00 5.14
1581 3764 4.260170 AGTACCTATAATACTCCGCTCCG 58.740 47.826 0.00 0.00 0.00 4.63
1806 4006 9.959749 GATTTTGTTCATAAACTACTCCACAAA 57.040 29.630 0.00 0.00 36.30 2.83
1807 4007 9.965824 ATTTTGTTCATAAACTACTCCACAAAG 57.034 29.630 0.00 0.00 35.09 2.77
1808 4008 8.514330 TTTGTTCATAAACTACTCCACAAAGT 57.486 30.769 0.00 0.00 36.30 2.66
1809 4009 9.616156 TTTGTTCATAAACTACTCCACAAAGTA 57.384 29.630 0.00 0.00 36.30 2.24
1810 4010 8.597662 TGTTCATAAACTACTCCACAAAGTAC 57.402 34.615 0.00 0.00 36.30 2.73
1811 4011 8.426489 TGTTCATAAACTACTCCACAAAGTACT 58.574 33.333 0.00 0.00 36.30 2.73
1812 4012 8.923683 GTTCATAAACTACTCCACAAAGTACTC 58.076 37.037 0.00 0.00 32.36 2.59
1813 4013 7.609056 TCATAAACTACTCCACAAAGTACTCC 58.391 38.462 0.00 0.00 0.00 3.85
1814 4014 4.886496 AACTACTCCACAAAGTACTCCC 57.114 45.455 0.00 0.00 0.00 4.30
1815 4015 4.129317 ACTACTCCACAAAGTACTCCCT 57.871 45.455 0.00 0.00 0.00 4.20
1816 4016 4.087907 ACTACTCCACAAAGTACTCCCTC 58.912 47.826 0.00 0.00 0.00 4.30
1817 4017 2.258109 ACTCCACAAAGTACTCCCTCC 58.742 52.381 0.00 0.00 0.00 4.30
1818 4018 1.204941 CTCCACAAAGTACTCCCTCCG 59.795 57.143 0.00 0.00 0.00 4.63
1819 4019 0.974383 CCACAAAGTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
1820 4020 1.346722 CCACAAAGTACTCCCTCCGTT 59.653 52.381 0.00 0.00 0.00 4.44
1821 4021 2.224450 CCACAAAGTACTCCCTCCGTTT 60.224 50.000 0.00 0.00 0.00 3.60
1822 4022 3.064931 CACAAAGTACTCCCTCCGTTTC 58.935 50.000 0.00 0.00 0.00 2.78
1823 4023 2.701951 ACAAAGTACTCCCTCCGTTTCA 59.298 45.455 0.00 0.00 0.00 2.69
1824 4024 3.326880 ACAAAGTACTCCCTCCGTTTCAT 59.673 43.478 0.00 0.00 0.00 2.57
1825 4025 4.529377 ACAAAGTACTCCCTCCGTTTCATA 59.471 41.667 0.00 0.00 0.00 2.15
1826 4026 5.012354 ACAAAGTACTCCCTCCGTTTCATAA 59.988 40.000 0.00 0.00 0.00 1.90
1827 4027 5.952347 AAGTACTCCCTCCGTTTCATAAT 57.048 39.130 0.00 0.00 0.00 1.28
1828 4028 7.093201 ACAAAGTACTCCCTCCGTTTCATAATA 60.093 37.037 0.00 0.00 0.00 0.98
1829 4029 7.613551 AAGTACTCCCTCCGTTTCATAATAT 57.386 36.000 0.00 0.00 0.00 1.28
1830 4030 8.716674 AAGTACTCCCTCCGTTTCATAATATA 57.283 34.615 0.00 0.00 0.00 0.86
1831 4031 8.716674 AGTACTCCCTCCGTTTCATAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
1832 4032 8.804204 AGTACTCCCTCCGTTTCATAATATAAG 58.196 37.037 0.00 0.00 0.00 1.73
1833 4033 7.850935 ACTCCCTCCGTTTCATAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
1834 4034 7.897864 ACTCCCTCCGTTTCATAATATAAGAG 58.102 38.462 0.00 0.00 0.00 2.85
1835 4035 6.698380 TCCCTCCGTTTCATAATATAAGAGC 58.302 40.000 0.00 0.00 0.00 4.09
1836 4036 5.577164 CCCTCCGTTTCATAATATAAGAGCG 59.423 44.000 0.00 0.00 0.00 5.03
1837 4037 6.157211 CCTCCGTTTCATAATATAAGAGCGT 58.843 40.000 0.00 0.00 0.00 5.07
1838 4038 6.645415 CCTCCGTTTCATAATATAAGAGCGTT 59.355 38.462 0.00 0.00 0.00 4.84
1839 4039 7.170998 CCTCCGTTTCATAATATAAGAGCGTTT 59.829 37.037 0.00 0.00 0.00 3.60
1840 4040 8.428186 TCCGTTTCATAATATAAGAGCGTTTT 57.572 30.769 0.00 0.00 0.00 2.43
1841 4041 8.885722 TCCGTTTCATAATATAAGAGCGTTTTT 58.114 29.630 0.00 0.00 0.00 1.94
1867 4067 5.730296 ACTAGTGTAGTGTCAAAGATGCT 57.270 39.130 0.00 0.00 37.69 3.79
1868 4068 5.715070 ACTAGTGTAGTGTCAAAGATGCTC 58.285 41.667 0.00 0.00 37.69 4.26
1869 4069 4.881019 AGTGTAGTGTCAAAGATGCTCT 57.119 40.909 0.00 0.00 0.00 4.09
1870 4070 5.220710 AGTGTAGTGTCAAAGATGCTCTT 57.779 39.130 0.00 0.00 38.59 2.85
1871 4071 6.346477 AGTGTAGTGTCAAAGATGCTCTTA 57.654 37.500 0.00 0.00 35.27 2.10
1872 4072 6.940739 AGTGTAGTGTCAAAGATGCTCTTAT 58.059 36.000 0.00 0.00 35.27 1.73
1873 4073 8.067751 AGTGTAGTGTCAAAGATGCTCTTATA 57.932 34.615 0.00 0.00 35.27 0.98
1874 4074 8.700051 AGTGTAGTGTCAAAGATGCTCTTATAT 58.300 33.333 0.00 0.00 35.27 0.86
1875 4075 9.319143 GTGTAGTGTCAAAGATGCTCTTATATT 57.681 33.333 0.00 0.00 35.27 1.28
1879 4079 9.499479 AGTGTCAAAGATGCTCTTATATTATGG 57.501 33.333 0.00 0.00 35.27 2.74
1880 4080 8.725148 GTGTCAAAGATGCTCTTATATTATGGG 58.275 37.037 0.00 0.00 35.27 4.00
1881 4081 8.659527 TGTCAAAGATGCTCTTATATTATGGGA 58.340 33.333 0.00 0.00 35.27 4.37
1882 4082 8.940952 GTCAAAGATGCTCTTATATTATGGGAC 58.059 37.037 0.00 0.00 35.27 4.46
1883 4083 7.819415 TCAAAGATGCTCTTATATTATGGGACG 59.181 37.037 0.00 0.00 35.27 4.79
1884 4084 6.227298 AGATGCTCTTATATTATGGGACGG 57.773 41.667 0.00 0.00 0.00 4.79
1885 4085 5.958380 AGATGCTCTTATATTATGGGACGGA 59.042 40.000 0.00 0.00 0.00 4.69
1886 4086 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
1887 4087 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
1888 4088 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1928 4128 8.033038 CACAAATTTAGTAGACAGTAGCCAGTA 58.967 37.037 0.00 0.00 0.00 2.74
2139 4342 4.116747 TCAAAAGAGAGCGAGATTCTCC 57.883 45.455 8.09 1.62 41.58 3.71
2180 4383 0.316204 GCATGTGCAAAGTCCAAGCT 59.684 50.000 0.00 0.00 41.59 3.74
2181 4384 1.269936 GCATGTGCAAAGTCCAAGCTT 60.270 47.619 0.00 0.00 41.59 3.74
2385 4607 3.754965 ACCAGCTGCTAATTTTGACTCA 58.245 40.909 8.66 0.00 0.00 3.41
2441 4664 5.959618 ACACTAAAACTGGCATTTCTACC 57.040 39.130 0.00 0.00 0.00 3.18
2526 4749 6.465894 GGGATGGGCTGTTGAAAGTATACTAT 60.466 42.308 5.65 0.00 0.00 2.12
2527 4750 7.256547 GGGATGGGCTGTTGAAAGTATACTATA 60.257 40.741 5.65 0.00 0.00 1.31
2528 4751 7.819900 GGATGGGCTGTTGAAAGTATACTATAG 59.180 40.741 5.65 0.00 0.00 1.31
2529 4752 7.670605 TGGGCTGTTGAAAGTATACTATAGT 57.329 36.000 10.87 10.87 0.00 2.12
2530 4753 8.771521 TGGGCTGTTGAAAGTATACTATAGTA 57.228 34.615 14.87 14.87 34.67 1.82
2636 4960 0.036105 AGGATTCACGTGCATGCAGA 60.036 50.000 23.41 12.70 0.00 4.26
2640 4964 1.308047 TTCACGTGCATGCAGAAAGT 58.692 45.000 23.41 15.80 0.00 2.66
2642 4966 2.698803 TCACGTGCATGCAGAAAGTAT 58.301 42.857 23.41 0.00 0.00 2.12
2661 5012 6.915544 AGTATACTGTTGATGCATGTGAAG 57.084 37.500 2.46 0.00 0.00 3.02
2785 5150 7.543172 TCCTTGTAGTACGATTTGTCACATAAC 59.457 37.037 0.00 0.00 0.00 1.89
2815 5180 8.225603 ACAGTAGGATATAAAATTGCCAGTTG 57.774 34.615 0.00 0.00 0.00 3.16
2827 5192 3.063510 TGCCAGTTGAGAGAAATGAGG 57.936 47.619 0.00 0.00 0.00 3.86
2861 5226 2.969827 CCATTTTCCACGGGCCAC 59.030 61.111 4.39 0.00 0.00 5.01
2868 5233 3.365265 CCACGGGCCACTGCTTTC 61.365 66.667 4.39 0.00 37.74 2.62
2960 5329 3.134458 AGAAGCAAGGAAGAAAGACGTG 58.866 45.455 0.00 0.00 0.00 4.49
2962 5331 0.238553 GCAAGGAAGAAAGACGTGCC 59.761 55.000 0.00 0.00 0.00 5.01
2997 5366 5.048713 CAGACAAAACAGTGGGAAGAATACC 60.049 44.000 0.00 0.00 0.00 2.73
3014 5383 7.439108 AGAATACCAGCAAATACTCCTACTT 57.561 36.000 0.00 0.00 0.00 2.24
3161 5604 5.390613 GTCTAACATTGGAATGGACGTTTG 58.609 41.667 4.45 0.00 40.70 2.93
3162 5605 2.723124 ACATTGGAATGGACGTTTGC 57.277 45.000 4.45 0.00 40.70 3.68
3169 5615 0.961019 AATGGACGTTTGCTGCATGT 59.039 45.000 1.84 2.47 0.00 3.21
3714 6165 4.309950 ACGGGCCTGGTCAACGTC 62.310 66.667 18.00 0.00 31.39 4.34
4188 6639 2.266055 GTGCTCGTCTGGAAGGGG 59.734 66.667 0.00 0.00 0.00 4.79
4297 6752 1.448922 CTTCCCTAGCTCCGTCTCCG 61.449 65.000 0.00 0.00 0.00 4.63
4347 6802 3.986277 TCTTCCTTGTTTGTCCTCGTAC 58.014 45.455 0.00 0.00 0.00 3.67
4348 6803 3.640029 TCTTCCTTGTTTGTCCTCGTACT 59.360 43.478 0.00 0.00 0.00 2.73
4349 6804 4.100498 TCTTCCTTGTTTGTCCTCGTACTT 59.900 41.667 0.00 0.00 0.00 2.24
4350 6805 5.302568 TCTTCCTTGTTTGTCCTCGTACTTA 59.697 40.000 0.00 0.00 0.00 2.24
4356 6811 3.416119 TTGTCCTCGTACTTAGATGCG 57.584 47.619 0.00 0.00 0.00 4.73
4450 6905 7.230108 ACCATCAATCATCATTGTTCTCATACC 59.770 37.037 0.00 0.00 40.47 2.73
4457 7001 7.947282 TCATCATTGTTCTCATACCACGTATA 58.053 34.615 0.00 0.00 0.00 1.47
4623 10027 4.166523 CGGCATACCTCGTACTATCATTG 58.833 47.826 0.00 0.00 0.00 2.82
4628 10032 6.687531 GCATACCTCGTACTATCATTGTATCG 59.312 42.308 0.00 0.00 0.00 2.92
4676 10080 1.065251 CCCTTCTACGTTCGACTAGGC 59.935 57.143 0.00 0.00 0.00 3.93
4686 10090 2.818132 GACTAGGCCTCGCAGCAT 59.182 61.111 9.68 0.00 0.00 3.79
4717 10121 2.135139 GAATCAATCACGGAGCGCATA 58.865 47.619 11.47 0.00 0.00 3.14
4719 10123 0.744281 TCAATCACGGAGCGCATAGA 59.256 50.000 11.47 0.00 0.00 1.98
4720 10124 1.341209 TCAATCACGGAGCGCATAGAT 59.659 47.619 11.47 2.36 0.00 1.98
4721 10125 2.138320 CAATCACGGAGCGCATAGATT 58.862 47.619 11.47 8.87 0.00 2.40
4722 10126 1.788258 ATCACGGAGCGCATAGATTG 58.212 50.000 11.47 0.00 0.00 2.67
4723 10127 0.459899 TCACGGAGCGCATAGATTGT 59.540 50.000 11.47 0.00 0.00 2.71
4724 10128 0.855349 CACGGAGCGCATAGATTGTC 59.145 55.000 11.47 0.00 0.00 3.18
4725 10129 0.459899 ACGGAGCGCATAGATTGTCA 59.540 50.000 11.47 0.00 0.00 3.58
4726 10130 1.069204 ACGGAGCGCATAGATTGTCAT 59.931 47.619 11.47 0.00 0.00 3.06
4727 10131 2.138320 CGGAGCGCATAGATTGTCATT 58.862 47.619 11.47 0.00 0.00 2.57
4728 10132 2.096565 CGGAGCGCATAGATTGTCATTG 60.097 50.000 11.47 0.00 0.00 2.82
4729 10133 2.874701 GGAGCGCATAGATTGTCATTGT 59.125 45.455 11.47 0.00 0.00 2.71
4730 10134 3.303593 GGAGCGCATAGATTGTCATTGTG 60.304 47.826 11.47 0.00 0.00 3.33
4731 10135 2.615447 AGCGCATAGATTGTCATTGTGG 59.385 45.455 11.47 0.00 0.00 4.17
4732 10136 2.355756 GCGCATAGATTGTCATTGTGGT 59.644 45.455 0.30 0.00 0.00 4.16
4733 10137 3.559655 GCGCATAGATTGTCATTGTGGTA 59.440 43.478 0.30 0.00 0.00 3.25
4734 10138 4.319046 GCGCATAGATTGTCATTGTGGTAG 60.319 45.833 0.30 0.00 0.00 3.18
4735 10139 4.319046 CGCATAGATTGTCATTGTGGTAGC 60.319 45.833 0.00 0.00 0.00 3.58
4736 10140 4.023707 GCATAGATTGTCATTGTGGTAGCC 60.024 45.833 0.00 0.00 0.00 3.93
4737 10141 3.004752 AGATTGTCATTGTGGTAGCCC 57.995 47.619 0.00 0.00 0.00 5.19
4738 10142 2.578021 AGATTGTCATTGTGGTAGCCCT 59.422 45.455 0.00 0.00 0.00 5.19
4739 10143 2.969821 TTGTCATTGTGGTAGCCCTT 57.030 45.000 0.00 0.00 0.00 3.95
4740 10144 2.969821 TGTCATTGTGGTAGCCCTTT 57.030 45.000 0.00 0.00 0.00 3.11
4741 10145 2.790433 TGTCATTGTGGTAGCCCTTTC 58.210 47.619 0.00 0.00 0.00 2.62
4742 10146 2.107378 TGTCATTGTGGTAGCCCTTTCA 59.893 45.455 0.00 0.00 0.00 2.69
4743 10147 3.245229 TGTCATTGTGGTAGCCCTTTCAT 60.245 43.478 0.00 0.00 0.00 2.57
4744 10148 3.378427 GTCATTGTGGTAGCCCTTTCATC 59.622 47.826 0.00 0.00 0.00 2.92
4745 10149 3.266772 TCATTGTGGTAGCCCTTTCATCT 59.733 43.478 0.00 0.00 0.00 2.90
4746 10150 4.473196 TCATTGTGGTAGCCCTTTCATCTA 59.527 41.667 0.00 0.00 0.00 1.98
4747 10151 3.906720 TGTGGTAGCCCTTTCATCTAC 57.093 47.619 0.00 0.00 33.72 2.59
4748 10152 3.178046 TGTGGTAGCCCTTTCATCTACA 58.822 45.455 0.00 0.00 35.58 2.74
4749 10153 3.585289 TGTGGTAGCCCTTTCATCTACAA 59.415 43.478 0.00 0.00 35.58 2.41
4750 10154 4.042311 TGTGGTAGCCCTTTCATCTACAAA 59.958 41.667 0.00 0.00 35.58 2.83
4751 10155 5.007682 GTGGTAGCCCTTTCATCTACAAAA 58.992 41.667 0.00 0.00 35.58 2.44
4752 10156 5.123979 GTGGTAGCCCTTTCATCTACAAAAG 59.876 44.000 0.00 0.00 35.58 2.27
4758 10162 4.972514 CTTTCATCTACAAAAGGAGGCC 57.027 45.455 0.00 0.00 0.00 5.19
4759 10163 3.366052 TTCATCTACAAAAGGAGGCCC 57.634 47.619 0.00 0.00 0.00 5.80
4760 10164 2.274542 TCATCTACAAAAGGAGGCCCA 58.725 47.619 0.00 0.00 33.88 5.36
4761 10165 2.852449 TCATCTACAAAAGGAGGCCCAT 59.148 45.455 0.00 0.00 33.88 4.00
4762 10166 2.806945 TCTACAAAAGGAGGCCCATG 57.193 50.000 0.00 0.00 33.88 3.66
4763 10167 2.274542 TCTACAAAAGGAGGCCCATGA 58.725 47.619 0.00 0.00 33.88 3.07
4764 10168 2.026262 TCTACAAAAGGAGGCCCATGAC 60.026 50.000 0.00 0.00 33.88 3.06
4765 10169 0.482446 ACAAAAGGAGGCCCATGACA 59.518 50.000 0.00 0.00 33.88 3.58
4766 10170 1.133199 ACAAAAGGAGGCCCATGACAA 60.133 47.619 0.00 0.00 33.88 3.18
4767 10171 2.181975 CAAAAGGAGGCCCATGACAAT 58.818 47.619 0.00 0.00 33.88 2.71
4768 10172 2.149973 AAAGGAGGCCCATGACAATC 57.850 50.000 0.00 0.00 33.88 2.67
4769 10173 1.302907 AAGGAGGCCCATGACAATCT 58.697 50.000 0.00 0.00 33.88 2.40
4770 10174 1.302907 AGGAGGCCCATGACAATCTT 58.697 50.000 0.00 0.00 33.88 2.40
4771 10175 1.642762 AGGAGGCCCATGACAATCTTT 59.357 47.619 0.00 0.00 33.88 2.52
4772 10176 2.852449 AGGAGGCCCATGACAATCTTTA 59.148 45.455 0.00 0.00 33.88 1.85
4773 10177 2.952310 GGAGGCCCATGACAATCTTTAC 59.048 50.000 0.00 0.00 0.00 2.01
4774 10178 3.620488 GAGGCCCATGACAATCTTTACA 58.380 45.455 0.00 0.00 0.00 2.41
4775 10179 4.016444 GAGGCCCATGACAATCTTTACAA 58.984 43.478 0.00 0.00 0.00 2.41
4776 10180 4.019174 AGGCCCATGACAATCTTTACAAG 58.981 43.478 0.00 0.00 0.00 3.16
4777 10181 3.131046 GGCCCATGACAATCTTTACAAGG 59.869 47.826 0.00 0.00 0.00 3.61
4778 10182 4.016444 GCCCATGACAATCTTTACAAGGA 58.984 43.478 0.00 0.00 0.00 3.36
4779 10183 4.646492 GCCCATGACAATCTTTACAAGGAT 59.354 41.667 0.00 0.00 0.00 3.24
4780 10184 5.221126 GCCCATGACAATCTTTACAAGGATC 60.221 44.000 0.00 0.00 0.00 3.36
4781 10185 5.008019 CCCATGACAATCTTTACAAGGATCG 59.992 44.000 0.00 0.00 0.00 3.69
4782 10186 5.817296 CCATGACAATCTTTACAAGGATCGA 59.183 40.000 0.00 0.00 0.00 3.59
4783 10187 6.238211 CCATGACAATCTTTACAAGGATCGAC 60.238 42.308 0.00 0.00 0.00 4.20
4784 10188 5.789521 TGACAATCTTTACAAGGATCGACA 58.210 37.500 0.00 0.00 0.00 4.35
4785 10189 5.869344 TGACAATCTTTACAAGGATCGACAG 59.131 40.000 0.00 0.00 0.00 3.51
4786 10190 4.631813 ACAATCTTTACAAGGATCGACAGC 59.368 41.667 0.00 0.00 0.00 4.40
4787 10191 3.247006 TCTTTACAAGGATCGACAGCC 57.753 47.619 0.00 0.00 0.00 4.85
4788 10192 2.832129 TCTTTACAAGGATCGACAGCCT 59.168 45.455 0.00 0.00 35.61 4.58
4789 10193 2.672961 TTACAAGGATCGACAGCCTG 57.327 50.000 4.28 0.00 34.00 4.85
4790 10194 0.175760 TACAAGGATCGACAGCCTGC 59.824 55.000 4.28 0.00 34.00 4.85
4791 10195 1.817099 CAAGGATCGACAGCCTGCC 60.817 63.158 4.28 0.00 34.00 4.85
4792 10196 3.036429 AAGGATCGACAGCCTGCCC 62.036 63.158 4.28 0.00 34.00 5.36
4793 10197 3.785859 GGATCGACAGCCTGCCCA 61.786 66.667 0.00 0.00 0.00 5.36
4794 10198 2.507944 GATCGACAGCCTGCCCAT 59.492 61.111 0.00 0.00 0.00 4.00
4795 10199 1.153086 GATCGACAGCCTGCCCATT 60.153 57.895 0.00 0.00 0.00 3.16
4796 10200 0.749454 GATCGACAGCCTGCCCATTT 60.749 55.000 0.00 0.00 0.00 2.32
4797 10201 1.033746 ATCGACAGCCTGCCCATTTG 61.034 55.000 0.00 0.00 0.00 2.32
4798 10202 2.575461 GACAGCCTGCCCATTTGC 59.425 61.111 0.00 0.00 0.00 3.68
4799 10203 2.203669 ACAGCCTGCCCATTTGCA 60.204 55.556 0.00 0.00 39.37 4.08
4800 10204 2.263540 CAGCCTGCCCATTTGCAC 59.736 61.111 0.00 0.00 36.04 4.57
4801 10205 2.118951 AGCCTGCCCATTTGCACT 59.881 55.556 0.00 0.00 36.04 4.40
4802 10206 0.966875 CAGCCTGCCCATTTGCACTA 60.967 55.000 0.00 0.00 36.04 2.74
4803 10207 0.682209 AGCCTGCCCATTTGCACTAG 60.682 55.000 0.00 0.00 36.04 2.57
4804 10208 1.811860 CCTGCCCATTTGCACTAGC 59.188 57.895 0.00 0.00 36.04 3.42
4805 10209 0.682209 CCTGCCCATTTGCACTAGCT 60.682 55.000 0.00 0.00 42.74 3.32
4806 10210 0.737219 CTGCCCATTTGCACTAGCTC 59.263 55.000 0.00 0.00 42.74 4.09
4807 10211 0.329261 TGCCCATTTGCACTAGCTCT 59.671 50.000 0.00 0.00 42.74 4.09
4808 10212 1.020437 GCCCATTTGCACTAGCTCTC 58.980 55.000 0.00 0.00 42.74 3.20
4809 10213 1.673168 CCCATTTGCACTAGCTCTCC 58.327 55.000 0.00 0.00 42.74 3.71
4810 10214 1.673168 CCATTTGCACTAGCTCTCCC 58.327 55.000 0.00 0.00 42.74 4.30
4811 10215 1.293924 CATTTGCACTAGCTCTCCCG 58.706 55.000 0.00 0.00 42.74 5.14
4812 10216 1.134699 CATTTGCACTAGCTCTCCCGA 60.135 52.381 0.00 0.00 42.74 5.14
4813 10217 0.532573 TTTGCACTAGCTCTCCCGAG 59.467 55.000 0.00 0.00 42.74 4.63
4821 10225 3.215245 CTCTCCCGAGCTCCTTGG 58.785 66.667 8.47 6.70 34.87 3.61
4822 10226 3.077556 TCTCCCGAGCTCCTTGGC 61.078 66.667 8.47 0.00 33.78 4.52
4823 10227 4.521062 CTCCCGAGCTCCTTGGCG 62.521 72.222 8.47 0.00 33.78 5.69
4828 10232 3.130160 GAGCTCCTTGGCGGCAAG 61.130 66.667 37.09 37.09 37.29 4.01
4833 10237 2.912025 CCTTGGCGGCAAGGTTGT 60.912 61.111 45.77 0.00 44.99 3.32
4834 10238 2.336088 CTTGGCGGCAAGGTTGTG 59.664 61.111 36.64 16.69 0.00 3.33
4835 10239 3.846602 CTTGGCGGCAAGGTTGTGC 62.847 63.158 36.64 0.00 44.14 4.57
4836 10240 4.892965 TGGCGGCAAGGTTGTGCT 62.893 61.111 10.22 0.00 44.31 4.40
4837 10241 4.043200 GGCGGCAAGGTTGTGCTC 62.043 66.667 3.07 0.00 44.31 4.26
4838 10242 2.980233 GCGGCAAGGTTGTGCTCT 60.980 61.111 0.00 0.00 44.31 4.09
4839 10243 2.970974 GCGGCAAGGTTGTGCTCTC 61.971 63.158 0.00 0.00 44.31 3.20
4840 10244 1.302033 CGGCAAGGTTGTGCTCTCT 60.302 57.895 0.00 0.00 44.31 3.10
4841 10245 0.886490 CGGCAAGGTTGTGCTCTCTT 60.886 55.000 0.00 0.00 44.31 2.85
4842 10246 0.595095 GGCAAGGTTGTGCTCTCTTG 59.405 55.000 0.00 0.00 44.31 3.02
4843 10247 1.312815 GCAAGGTTGTGCTCTCTTGT 58.687 50.000 13.88 0.00 41.51 3.16
4844 10248 2.494059 GCAAGGTTGTGCTCTCTTGTA 58.506 47.619 13.88 0.00 41.51 2.41
4845 10249 2.878406 GCAAGGTTGTGCTCTCTTGTAA 59.122 45.455 13.88 0.00 41.51 2.41
4846 10250 3.304057 GCAAGGTTGTGCTCTCTTGTAAC 60.304 47.826 13.88 0.00 41.51 2.50
4847 10251 4.130118 CAAGGTTGTGCTCTCTTGTAACT 58.870 43.478 0.00 0.00 33.85 2.24
4848 10252 4.423625 AGGTTGTGCTCTCTTGTAACTT 57.576 40.909 0.00 0.00 0.00 2.66
4849 10253 4.130118 AGGTTGTGCTCTCTTGTAACTTG 58.870 43.478 0.00 0.00 0.00 3.16
4850 10254 3.251004 GGTTGTGCTCTCTTGTAACTTGG 59.749 47.826 0.00 0.00 0.00 3.61
4851 10255 3.126001 TGTGCTCTCTTGTAACTTGGG 57.874 47.619 0.00 0.00 0.00 4.12
4852 10256 1.807142 GTGCTCTCTTGTAACTTGGGC 59.193 52.381 0.00 0.00 0.00 5.36
4853 10257 1.419762 TGCTCTCTTGTAACTTGGGCA 59.580 47.619 0.00 0.00 0.00 5.36
4854 10258 2.040278 TGCTCTCTTGTAACTTGGGCAT 59.960 45.455 0.00 0.00 0.00 4.40
4855 10259 3.084786 GCTCTCTTGTAACTTGGGCATT 58.915 45.455 0.00 0.00 0.00 3.56
4856 10260 3.507622 GCTCTCTTGTAACTTGGGCATTT 59.492 43.478 0.00 0.00 0.00 2.32
4857 10261 4.379918 GCTCTCTTGTAACTTGGGCATTTC 60.380 45.833 0.00 0.00 0.00 2.17
4858 10262 4.079253 TCTCTTGTAACTTGGGCATTTCC 58.921 43.478 0.00 0.00 0.00 3.13
4859 10263 3.826157 CTCTTGTAACTTGGGCATTTCCA 59.174 43.478 0.00 0.00 36.21 3.53
4860 10264 3.572255 TCTTGTAACTTGGGCATTTCCAC 59.428 43.478 0.00 0.00 36.38 4.02
4861 10265 1.883275 TGTAACTTGGGCATTTCCACG 59.117 47.619 0.00 0.00 36.38 4.94
4862 10266 2.156098 GTAACTTGGGCATTTCCACGA 58.844 47.619 0.00 0.00 36.38 4.35
4863 10267 1.923356 AACTTGGGCATTTCCACGAT 58.077 45.000 0.00 0.00 36.38 3.73
4895 10299 1.009389 GTTCGGGTCTCTGTGAAGCG 61.009 60.000 0.00 0.00 0.00 4.68
4904 10308 3.429207 GTCTCTGTGAAGCGTAAAACTCC 59.571 47.826 0.00 0.00 0.00 3.85
5004 10408 0.967380 GCTAGTGCAAATGGGCAGGT 60.967 55.000 0.00 0.00 45.96 4.00
5042 10446 1.273327 GTTGTCATGGGCCTCCTTTTG 59.727 52.381 4.53 0.00 0.00 2.44
5066 10471 3.266772 AGATGAAAGGGCTACCACAATGA 59.733 43.478 0.00 0.00 40.13 2.57
5115 10520 3.960755 AGTGGCTACAGTGCTATCATACA 59.039 43.478 2.02 0.00 0.00 2.29
5124 10529 9.363763 CTACAGTGCTATCATACATAATTCTGG 57.636 37.037 0.00 0.00 0.00 3.86
5137 10542 5.248477 ACATAATTCTGGCGGTATAGGACAT 59.752 40.000 0.00 0.00 0.00 3.06
5183 10588 2.903357 GCTGAGGAGGAATGCCGA 59.097 61.111 0.00 0.00 39.96 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.921470 TTTCGGATCTTTCGATGTTGAC 57.079 40.909 0.00 0.00 36.49 3.18
115 124 4.383118 GGGAATGGGATGGTCAGTATATCG 60.383 50.000 0.00 0.00 0.00 2.92
130 139 4.475919 AATTCTTATCCCTGGGAATGGG 57.524 45.455 21.42 10.42 45.90 4.00
131 140 5.313240 TCCTAATTCTTATCCCTGGGAATGG 59.687 44.000 21.42 12.21 34.34 3.16
132 141 6.454223 TCCTAATTCTTATCCCTGGGAATG 57.546 41.667 21.42 12.63 34.34 2.67
133 142 6.011274 CCATCCTAATTCTTATCCCTGGGAAT 60.011 42.308 21.42 10.94 34.34 3.01
134 143 5.313240 CCATCCTAATTCTTATCCCTGGGAA 59.687 44.000 21.42 2.42 34.34 3.97
183 192 3.353557 GGACCCTAAAGTTGATCCAACC 58.646 50.000 6.24 0.00 44.49 3.77
248 257 2.165234 CTCGTGATGGTGAGTCATGAGT 59.835 50.000 1.67 1.67 46.92 3.41
273 282 5.975693 ATTTTCTACAAGAAATTGGCGGA 57.024 34.783 3.12 0.00 43.06 5.54
293 302 2.887152 AGCAGCTTTTCGTTGGAGAATT 59.113 40.909 0.00 0.00 0.00 2.17
345 359 8.021396 ACTGTTTTAACCAGCGAGAATATTTTC 58.979 33.333 0.00 0.00 0.00 2.29
350 364 7.799784 GTTAACTGTTTTAACCAGCGAGAATA 58.200 34.615 0.00 0.00 0.00 1.75
351 365 6.665465 GTTAACTGTTTTAACCAGCGAGAAT 58.335 36.000 0.00 0.00 0.00 2.40
534 561 1.660607 CGAGTTGTGTTGATCGATGGG 59.339 52.381 0.54 0.00 37.35 4.00
587 616 2.480037 ACATTATGCACACACACACTCG 59.520 45.455 0.00 0.00 0.00 4.18
604 633 7.223971 GCTCAAATTCAATCACATGCATACATT 59.776 33.333 0.00 0.00 32.87 2.71
629 658 1.442769 TTCAATCGAGCACTCTTGGC 58.557 50.000 0.00 0.00 0.00 4.52
634 663 5.157067 TCGATATGATTCAATCGAGCACTC 58.843 41.667 20.19 0.00 46.52 3.51
635 664 5.126396 TCGATATGATTCAATCGAGCACT 57.874 39.130 20.19 0.00 46.52 4.40
707 736 4.127171 GGCATTATCTTAAACTCGCTGGA 58.873 43.478 0.00 0.00 0.00 3.86
796 825 4.373116 GCGGGTCAACGGCTGAGA 62.373 66.667 0.00 0.00 41.72 3.27
828 868 1.590238 GCTAGATTGCGCTGTGTGTAG 59.410 52.381 9.73 5.43 0.00 2.74
1035 3218 0.981277 GCCTGCCAGGGTAGTCCTTA 60.981 60.000 13.78 0.00 45.47 2.69
1119 3302 4.403734 TGTACATACCTGAGATGCCGATA 58.596 43.478 0.00 0.00 0.00 2.92
1125 3308 6.162079 GTGATCCATGTACATACCTGAGATG 58.838 44.000 8.32 0.00 0.00 2.90
1135 3318 0.880278 GGCGCGTGATCCATGTACAT 60.880 55.000 8.43 1.41 0.00 2.29
1152 3335 1.521681 GTAGAGGATGTGCGTGGGC 60.522 63.158 0.00 0.00 40.52 5.36
1153 3336 0.103208 GAGTAGAGGATGTGCGTGGG 59.897 60.000 0.00 0.00 0.00 4.61
1154 3337 1.107114 AGAGTAGAGGATGTGCGTGG 58.893 55.000 0.00 0.00 0.00 4.94
1155 3338 4.541779 GAATAGAGTAGAGGATGTGCGTG 58.458 47.826 0.00 0.00 0.00 5.34
1156 3339 3.251245 CGAATAGAGTAGAGGATGTGCGT 59.749 47.826 0.00 0.00 0.00 5.24
1157 3340 3.498777 TCGAATAGAGTAGAGGATGTGCG 59.501 47.826 0.00 0.00 0.00 5.34
1312 3495 6.266323 CAGCTGATTGTCGTACTTACAGTAT 58.734 40.000 8.42 0.00 32.65 2.12
1318 3501 3.428999 GGAGCAGCTGATTGTCGTACTTA 60.429 47.826 20.43 0.00 0.00 2.24
1330 3513 0.833409 TGAAGGTCTGGAGCAGCTGA 60.833 55.000 20.43 0.00 0.00 4.26
1510 3693 4.148825 ACACCGAGGAGGATGCGC 62.149 66.667 0.00 0.00 45.00 6.09
1581 3764 5.169295 AGGAGTACAAATGAACGAGCTAAC 58.831 41.667 0.00 0.00 0.00 2.34
1589 3772 9.046296 CCACAGATAATAGGAGTACAAATGAAC 57.954 37.037 0.00 0.00 0.00 3.18
1789 3989 6.817140 GGGAGTACTTTGTGGAGTAGTTTATG 59.183 42.308 0.00 0.00 36.24 1.90
1806 4006 8.716674 TTATATTATGAAACGGAGGGAGTACT 57.283 34.615 0.00 0.00 0.00 2.73
1807 4007 8.800332 TCTTATATTATGAAACGGAGGGAGTAC 58.200 37.037 0.00 0.00 0.00 2.73
1808 4008 8.945195 TCTTATATTATGAAACGGAGGGAGTA 57.055 34.615 0.00 0.00 0.00 2.59
1809 4009 7.525692 GCTCTTATATTATGAAACGGAGGGAGT 60.526 40.741 0.00 0.00 0.00 3.85
1810 4010 6.814146 GCTCTTATATTATGAAACGGAGGGAG 59.186 42.308 0.00 0.00 0.00 4.30
1811 4011 6.571731 CGCTCTTATATTATGAAACGGAGGGA 60.572 42.308 0.00 0.00 34.63 4.20
1812 4012 5.577164 CGCTCTTATATTATGAAACGGAGGG 59.423 44.000 0.00 0.00 0.00 4.30
1813 4013 6.157211 ACGCTCTTATATTATGAAACGGAGG 58.843 40.000 0.00 0.00 0.00 4.30
1814 4014 7.639162 AACGCTCTTATATTATGAAACGGAG 57.361 36.000 0.00 0.00 0.00 4.63
1815 4015 8.428186 AAAACGCTCTTATATTATGAAACGGA 57.572 30.769 0.00 0.00 0.00 4.69
1845 4045 5.715070 GAGCATCTTTGACACTACACTAGT 58.285 41.667 0.00 0.00 40.28 2.57
1862 4062 6.222038 TCCGTCCCATAATATAAGAGCATC 57.778 41.667 0.00 0.00 0.00 3.91
1863 4063 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
1864 4064 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
1865 4065 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1866 4066 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1867 4067 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1868 4068 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1869 4069 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1870 4070 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1871 4071 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1872 4072 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
1873 4073 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
1874 4074 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
1875 4075 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
1876 4076 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
1877 4077 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
1878 4078 0.178970 TATGCTACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
1879 4079 1.926108 ATATGCTACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
1880 4080 5.066246 GTGTATATATGCTACTCCCTCCGTC 59.934 48.000 2.37 0.00 0.00 4.79
1881 4081 4.948621 GTGTATATATGCTACTCCCTCCGT 59.051 45.833 2.37 0.00 0.00 4.69
1882 4082 4.948004 TGTGTATATATGCTACTCCCTCCG 59.052 45.833 2.37 0.00 0.00 4.63
1883 4083 6.852420 TTGTGTATATATGCTACTCCCTCC 57.148 41.667 2.37 0.00 0.00 4.30
1884 4084 9.726438 AAATTTGTGTATATATGCTACTCCCTC 57.274 33.333 2.37 0.00 0.00 4.30
1928 4128 6.610075 ATTCATTTCATTTTGCCACCTACT 57.390 33.333 0.00 0.00 0.00 2.57
2139 4342 3.682858 CACGGTGGTTGTAACTTCCTATG 59.317 47.826 0.00 0.00 0.00 2.23
2233 4436 0.034089 GCATCAAAGTGGGCCCTACT 60.034 55.000 25.70 21.20 0.00 2.57
2430 4653 1.664151 GTACGCAGTGGTAGAAATGCC 59.336 52.381 0.00 0.00 45.73 4.40
2441 4664 2.776312 ATCAGGATACGTACGCAGTG 57.224 50.000 16.72 6.28 43.29 3.66
2494 4717 0.916086 AACAGCCCATCCCATCGTTA 59.084 50.000 0.00 0.00 0.00 3.18
2496 4719 1.077501 CAACAGCCCATCCCATCGT 60.078 57.895 0.00 0.00 0.00 3.73
2501 4724 2.507407 TACTTTCAACAGCCCATCCC 57.493 50.000 0.00 0.00 0.00 3.85
2535 4758 9.326413 AGCTGCTAATTAAAATGAATACGTACT 57.674 29.630 0.00 0.00 0.00 2.73
2536 4759 9.370126 CAGCTGCTAATTAAAATGAATACGTAC 57.630 33.333 0.00 0.00 0.00 3.67
2538 4761 7.067008 ACCAGCTGCTAATTAAAATGAATACGT 59.933 33.333 8.66 0.00 0.00 3.57
2539 4762 7.376866 CACCAGCTGCTAATTAAAATGAATACG 59.623 37.037 8.66 0.00 0.00 3.06
2568 4881 2.425668 CCCAATGAATTGAACCGGTACC 59.574 50.000 8.00 0.16 40.14 3.34
2573 4886 0.179140 CGGCCCAATGAATTGAACCG 60.179 55.000 16.80 16.80 43.87 4.44
2636 4960 7.627088 GCTTCACATGCATCAACAGTATACTTT 60.627 37.037 1.56 0.00 0.00 2.66
2640 4964 5.295045 CAGCTTCACATGCATCAACAGTATA 59.705 40.000 0.00 0.00 0.00 1.47
2642 4966 3.437741 CAGCTTCACATGCATCAACAGTA 59.562 43.478 0.00 0.00 0.00 2.74
2661 5012 3.549794 AGATGCAAGGAAGGTAATCAGC 58.450 45.455 0.00 0.00 0.00 4.26
2785 5150 9.725019 TGGCAATTTTATATCCTACTGTATGAG 57.275 33.333 0.00 0.00 0.00 2.90
2815 5180 3.851098 ACTTGCGTACCTCATTTCTCTC 58.149 45.455 0.00 0.00 0.00 3.20
2827 5192 1.154035 GGCATGCCAACTTGCGTAC 60.154 57.895 32.08 0.00 45.45 3.67
2840 5205 1.153588 GCCCGTGGAAAATGGCATG 60.154 57.895 0.00 0.00 43.46 4.06
2841 5206 2.358372 GGCCCGTGGAAAATGGCAT 61.358 57.895 0.00 0.00 45.83 4.40
2842 5207 2.994417 GGCCCGTGGAAAATGGCA 60.994 61.111 0.00 0.00 45.83 4.92
2843 5208 2.994417 TGGCCCGTGGAAAATGGC 60.994 61.111 0.00 0.00 43.26 4.40
2844 5209 1.606313 AGTGGCCCGTGGAAAATGG 60.606 57.895 0.00 0.00 34.30 3.16
2845 5210 1.586028 CAGTGGCCCGTGGAAAATG 59.414 57.895 0.00 0.00 0.00 2.32
2861 5226 5.308825 TCTTTGGAGGACTAAAGAAAGCAG 58.691 41.667 0.00 0.00 45.65 4.24
2868 5233 6.292150 AGTCAAAGTCTTTGGAGGACTAAAG 58.708 40.000 22.23 0.00 42.39 1.85
2960 5329 0.039256 TTGTCTGCATTGCTTTCGGC 60.039 50.000 10.49 0.00 42.22 5.54
2962 5331 3.114809 TGTTTTGTCTGCATTGCTTTCG 58.885 40.909 10.49 0.00 0.00 3.46
2997 5366 6.985188 TTGCTAAAGTAGGAGTATTTGCTG 57.015 37.500 0.00 0.00 0.00 4.41
3161 5604 1.699656 CGGCACAGACTACATGCAGC 61.700 60.000 0.00 0.00 41.27 5.25
3162 5605 1.086067 CCGGCACAGACTACATGCAG 61.086 60.000 0.00 0.00 41.27 4.41
3169 5615 0.251474 AGGTACACCGGCACAGACTA 60.251 55.000 0.00 0.00 42.08 2.59
3714 6165 3.524759 GACACGAGCGTCGCGAAG 61.525 66.667 18.03 18.03 45.12 3.79
4188 6639 3.730761 CTGCGCCAGAACCAGTGC 61.731 66.667 4.18 0.00 39.93 4.40
4297 6752 7.270579 GGAAGAAAAGCAATTAATGTACACGAC 59.729 37.037 0.00 0.00 0.00 4.34
4347 6802 3.165058 TGACCTAAGCACGCATCTAAG 57.835 47.619 0.00 0.00 0.00 2.18
4348 6803 3.603158 TTGACCTAAGCACGCATCTAA 57.397 42.857 0.00 0.00 0.00 2.10
4349 6804 3.259064 GTTTGACCTAAGCACGCATCTA 58.741 45.455 0.00 0.00 0.00 1.98
4350 6805 2.076863 GTTTGACCTAAGCACGCATCT 58.923 47.619 0.00 0.00 0.00 2.90
4356 6811 1.263217 CACACGGTTTGACCTAAGCAC 59.737 52.381 0.00 0.00 35.66 4.40
4457 7001 8.465201 GCTGATTCTTCTTCCAAGTGAAAATAT 58.535 33.333 0.00 0.00 31.06 1.28
4460 7004 5.010012 GGCTGATTCTTCTTCCAAGTGAAAA 59.990 40.000 0.00 0.00 31.06 2.29
4602 9998 5.135508 ACAATGATAGTACGAGGTATGCC 57.864 43.478 0.00 0.00 0.00 4.40
4628 10032 2.034305 AGCCCATAGATTGTCGTACGTC 59.966 50.000 16.05 10.62 0.00 4.34
4670 10074 1.043116 TGTATGCTGCGAGGCCTAGT 61.043 55.000 14.88 0.00 0.00 2.57
4676 10080 0.654683 GCTCTTTGTATGCTGCGAGG 59.345 55.000 0.00 0.00 0.00 4.63
4686 10090 4.631377 CCGTGATTGATTCTGCTCTTTGTA 59.369 41.667 0.00 0.00 0.00 2.41
4717 10121 2.578021 AGGGCTACCACAATGACAATCT 59.422 45.455 0.00 0.00 40.13 2.40
4719 10123 3.456380 AAGGGCTACCACAATGACAAT 57.544 42.857 0.00 0.00 40.13 2.71
4720 10124 2.969821 AAGGGCTACCACAATGACAA 57.030 45.000 0.00 0.00 40.13 3.18
4721 10125 2.107378 TGAAAGGGCTACCACAATGACA 59.893 45.455 0.00 0.00 40.13 3.58
4722 10126 2.790433 TGAAAGGGCTACCACAATGAC 58.210 47.619 0.00 0.00 40.13 3.06
4723 10127 3.266772 AGATGAAAGGGCTACCACAATGA 59.733 43.478 0.00 0.00 40.13 2.57
4724 10128 3.624777 AGATGAAAGGGCTACCACAATG 58.375 45.455 0.00 0.00 40.13 2.82
4725 10129 4.227300 TGTAGATGAAAGGGCTACCACAAT 59.773 41.667 0.00 0.00 40.13 2.71
4726 10130 3.585289 TGTAGATGAAAGGGCTACCACAA 59.415 43.478 0.00 0.00 40.13 3.33
4727 10131 3.178046 TGTAGATGAAAGGGCTACCACA 58.822 45.455 0.00 0.00 40.13 4.17
4728 10132 3.906720 TGTAGATGAAAGGGCTACCAC 57.093 47.619 0.00 0.00 40.13 4.16
4729 10133 4.919774 TTTGTAGATGAAAGGGCTACCA 57.080 40.909 0.00 0.00 40.13 3.25
4730 10134 4.640647 CCTTTTGTAGATGAAAGGGCTACC 59.359 45.833 6.92 0.00 45.20 3.18
4731 10135 5.819825 CCTTTTGTAGATGAAAGGGCTAC 57.180 43.478 6.92 0.00 45.20 3.58
4737 10141 3.696548 GGGCCTCCTTTTGTAGATGAAAG 59.303 47.826 0.84 0.00 33.67 2.62
4738 10142 3.075283 TGGGCCTCCTTTTGTAGATGAAA 59.925 43.478 4.53 0.00 0.00 2.69
4739 10143 2.647299 TGGGCCTCCTTTTGTAGATGAA 59.353 45.455 4.53 0.00 0.00 2.57
4740 10144 2.274542 TGGGCCTCCTTTTGTAGATGA 58.725 47.619 4.53 0.00 0.00 2.92
4741 10145 2.806945 TGGGCCTCCTTTTGTAGATG 57.193 50.000 4.53 0.00 0.00 2.90
4742 10146 2.852449 TCATGGGCCTCCTTTTGTAGAT 59.148 45.455 4.53 0.00 0.00 1.98
4743 10147 2.026262 GTCATGGGCCTCCTTTTGTAGA 60.026 50.000 4.53 0.00 0.00 2.59
4744 10148 2.290896 TGTCATGGGCCTCCTTTTGTAG 60.291 50.000 4.53 0.00 0.00 2.74
4745 10149 1.707989 TGTCATGGGCCTCCTTTTGTA 59.292 47.619 4.53 0.00 0.00 2.41
4746 10150 0.482446 TGTCATGGGCCTCCTTTTGT 59.518 50.000 4.53 0.00 0.00 2.83
4747 10151 1.631405 TTGTCATGGGCCTCCTTTTG 58.369 50.000 4.53 0.00 0.00 2.44
4748 10152 2.043526 AGATTGTCATGGGCCTCCTTTT 59.956 45.455 4.53 0.00 0.00 2.27
4749 10153 1.642762 AGATTGTCATGGGCCTCCTTT 59.357 47.619 4.53 0.00 0.00 3.11
4750 10154 1.302907 AGATTGTCATGGGCCTCCTT 58.697 50.000 4.53 0.00 0.00 3.36
4751 10155 1.302907 AAGATTGTCATGGGCCTCCT 58.697 50.000 4.53 0.00 0.00 3.69
4752 10156 2.149973 AAAGATTGTCATGGGCCTCC 57.850 50.000 4.53 0.00 0.00 4.30
4753 10157 3.620488 TGTAAAGATTGTCATGGGCCTC 58.380 45.455 4.53 0.00 0.00 4.70
4754 10158 3.737559 TGTAAAGATTGTCATGGGCCT 57.262 42.857 4.53 0.00 0.00 5.19
4768 10172 2.932614 CAGGCTGTCGATCCTTGTAAAG 59.067 50.000 6.28 0.00 45.69 1.85
4769 10173 2.935238 GCAGGCTGTCGATCCTTGTAAA 60.935 50.000 17.16 0.00 0.00 2.01
4770 10174 1.405526 GCAGGCTGTCGATCCTTGTAA 60.406 52.381 17.16 0.00 0.00 2.41
4771 10175 0.175760 GCAGGCTGTCGATCCTTGTA 59.824 55.000 17.16 0.00 0.00 2.41
4772 10176 1.078848 GCAGGCTGTCGATCCTTGT 60.079 57.895 17.16 0.00 0.00 3.16
4773 10177 1.817099 GGCAGGCTGTCGATCCTTG 60.817 63.158 17.16 0.00 0.00 3.61
4774 10178 2.586792 GGCAGGCTGTCGATCCTT 59.413 61.111 17.16 0.00 0.00 3.36
4775 10179 3.474570 GGGCAGGCTGTCGATCCT 61.475 66.667 17.16 0.00 0.00 3.24
4776 10180 2.615227 AATGGGCAGGCTGTCGATCC 62.615 60.000 17.06 8.26 0.00 3.36
4777 10181 0.749454 AAATGGGCAGGCTGTCGATC 60.749 55.000 17.06 1.81 0.00 3.69
4778 10182 1.033746 CAAATGGGCAGGCTGTCGAT 61.034 55.000 17.16 14.07 0.00 3.59
4779 10183 1.675310 CAAATGGGCAGGCTGTCGA 60.675 57.895 17.16 11.98 0.00 4.20
4780 10184 2.879907 CAAATGGGCAGGCTGTCG 59.120 61.111 17.16 0.00 0.00 4.35
4781 10185 2.277591 TGCAAATGGGCAGGCTGTC 61.278 57.895 17.16 14.51 39.25 3.51
4782 10186 2.203669 TGCAAATGGGCAGGCTGT 60.204 55.556 17.16 0.00 39.25 4.40
4783 10187 0.966875 TAGTGCAAATGGGCAGGCTG 60.967 55.000 10.94 10.94 45.96 4.85
4784 10188 0.682209 CTAGTGCAAATGGGCAGGCT 60.682 55.000 0.00 0.00 45.96 4.58
4785 10189 1.811860 CTAGTGCAAATGGGCAGGC 59.188 57.895 0.00 0.00 45.96 4.85
4786 10190 0.682209 AGCTAGTGCAAATGGGCAGG 60.682 55.000 0.00 0.00 45.96 4.85
4787 10191 0.737219 GAGCTAGTGCAAATGGGCAG 59.263 55.000 0.00 0.00 45.96 4.85
4788 10192 0.329261 AGAGCTAGTGCAAATGGGCA 59.671 50.000 0.00 0.00 42.74 5.36
4789 10193 1.020437 GAGAGCTAGTGCAAATGGGC 58.980 55.000 0.00 0.00 42.74 5.36
4790 10194 1.673168 GGAGAGCTAGTGCAAATGGG 58.327 55.000 0.00 0.00 42.74 4.00
4791 10195 1.673168 GGGAGAGCTAGTGCAAATGG 58.327 55.000 0.00 0.00 42.74 3.16
4792 10196 1.134699 TCGGGAGAGCTAGTGCAAATG 60.135 52.381 0.00 0.00 42.74 2.32
4793 10197 1.195115 TCGGGAGAGCTAGTGCAAAT 58.805 50.000 0.00 0.00 42.74 2.32
4794 10198 2.666085 TCGGGAGAGCTAGTGCAAA 58.334 52.632 0.00 0.00 42.74 3.68
4795 10199 4.434483 TCGGGAGAGCTAGTGCAA 57.566 55.556 0.00 0.00 42.74 4.08
4805 10209 3.077556 GCCAAGGAGCTCGGGAGA 61.078 66.667 18.65 0.00 37.31 3.71
4806 10210 4.521062 CGCCAAGGAGCTCGGGAG 62.521 72.222 18.65 12.87 0.00 4.30
4811 10215 3.130160 CTTGCCGCCAAGGAGCTC 61.130 66.667 4.71 4.71 43.75 4.09
4817 10221 2.336088 CACAACCTTGCCGCCAAG 59.664 61.111 0.00 0.00 46.38 3.61
4818 10222 3.910490 GCACAACCTTGCCGCCAA 61.910 61.111 0.00 0.00 36.42 4.52
4819 10223 4.892965 AGCACAACCTTGCCGCCA 62.893 61.111 0.00 0.00 44.14 5.69
4820 10224 4.043200 GAGCACAACCTTGCCGCC 62.043 66.667 0.00 0.00 44.14 6.13
4821 10225 2.970974 GAGAGCACAACCTTGCCGC 61.971 63.158 0.00 0.00 44.14 6.53
4822 10226 0.886490 AAGAGAGCACAACCTTGCCG 60.886 55.000 0.00 0.00 44.14 5.69
4823 10227 0.595095 CAAGAGAGCACAACCTTGCC 59.405 55.000 0.00 0.00 44.14 4.52
4824 10228 1.312815 ACAAGAGAGCACAACCTTGC 58.687 50.000 0.00 0.00 43.34 4.01
4825 10229 4.130118 AGTTACAAGAGAGCACAACCTTG 58.870 43.478 0.00 0.00 41.12 3.61
4826 10230 4.423625 AGTTACAAGAGAGCACAACCTT 57.576 40.909 0.00 0.00 0.00 3.50
4827 10231 4.130118 CAAGTTACAAGAGAGCACAACCT 58.870 43.478 0.00 0.00 0.00 3.50
4828 10232 3.251004 CCAAGTTACAAGAGAGCACAACC 59.749 47.826 0.00 0.00 0.00 3.77
4829 10233 3.251004 CCCAAGTTACAAGAGAGCACAAC 59.749 47.826 0.00 0.00 0.00 3.32
4830 10234 3.476552 CCCAAGTTACAAGAGAGCACAA 58.523 45.455 0.00 0.00 0.00 3.33
4831 10235 2.810400 GCCCAAGTTACAAGAGAGCACA 60.810 50.000 0.00 0.00 0.00 4.57
4832 10236 1.807142 GCCCAAGTTACAAGAGAGCAC 59.193 52.381 0.00 0.00 0.00 4.40
4833 10237 1.419762 TGCCCAAGTTACAAGAGAGCA 59.580 47.619 0.00 0.00 0.00 4.26
4834 10238 2.185004 TGCCCAAGTTACAAGAGAGC 57.815 50.000 0.00 0.00 0.00 4.09
4835 10239 4.156739 GGAAATGCCCAAGTTACAAGAGAG 59.843 45.833 0.00 0.00 0.00 3.20
4836 10240 4.079253 GGAAATGCCCAAGTTACAAGAGA 58.921 43.478 0.00 0.00 0.00 3.10
4837 10241 3.826157 TGGAAATGCCCAAGTTACAAGAG 59.174 43.478 0.00 0.00 34.97 2.85
4838 10242 3.572255 GTGGAAATGCCCAAGTTACAAGA 59.428 43.478 0.00 0.00 38.06 3.02
4839 10243 3.611530 CGTGGAAATGCCCAAGTTACAAG 60.612 47.826 0.00 0.00 38.06 3.16
4840 10244 2.294791 CGTGGAAATGCCCAAGTTACAA 59.705 45.455 0.00 0.00 38.06 2.41
4841 10245 1.883275 CGTGGAAATGCCCAAGTTACA 59.117 47.619 0.00 0.00 38.06 2.41
4842 10246 2.156098 TCGTGGAAATGCCCAAGTTAC 58.844 47.619 0.00 0.00 38.06 2.50
4843 10247 2.570415 TCGTGGAAATGCCCAAGTTA 57.430 45.000 0.00 0.00 38.06 2.24
4844 10248 1.818674 GATCGTGGAAATGCCCAAGTT 59.181 47.619 0.00 0.00 38.06 2.66
4845 10249 1.463674 GATCGTGGAAATGCCCAAGT 58.536 50.000 0.00 0.00 38.06 3.16
4846 10250 0.378257 CGATCGTGGAAATGCCCAAG 59.622 55.000 7.03 0.00 38.06 3.61
4847 10251 1.029408 CCGATCGTGGAAATGCCCAA 61.029 55.000 15.09 0.00 38.06 4.12
4848 10252 1.451207 CCGATCGTGGAAATGCCCA 60.451 57.895 15.09 0.00 34.97 5.36
4849 10253 1.029947 AACCGATCGTGGAAATGCCC 61.030 55.000 15.09 0.00 34.97 5.36
4850 10254 0.808755 AAACCGATCGTGGAAATGCC 59.191 50.000 15.09 0.00 37.10 4.40
4851 10255 2.676342 AGTAAACCGATCGTGGAAATGC 59.324 45.455 15.09 0.00 0.00 3.56
4852 10256 3.930229 TGAGTAAACCGATCGTGGAAATG 59.070 43.478 15.09 0.00 0.00 2.32
4853 10257 4.181578 CTGAGTAAACCGATCGTGGAAAT 58.818 43.478 15.09 0.00 0.00 2.17
4854 10258 3.581755 CTGAGTAAACCGATCGTGGAAA 58.418 45.455 15.09 0.00 0.00 3.13
4855 10259 2.094390 CCTGAGTAAACCGATCGTGGAA 60.094 50.000 15.09 0.00 0.00 3.53
4856 10260 1.475280 CCTGAGTAAACCGATCGTGGA 59.525 52.381 15.09 0.00 0.00 4.02
4857 10261 1.203994 ACCTGAGTAAACCGATCGTGG 59.796 52.381 15.09 1.70 0.00 4.94
4858 10262 2.649331 ACCTGAGTAAACCGATCGTG 57.351 50.000 15.09 8.18 0.00 4.35
4859 10263 2.415090 CGAACCTGAGTAAACCGATCGT 60.415 50.000 15.09 0.00 0.00 3.73
4860 10264 2.182825 CGAACCTGAGTAAACCGATCG 58.817 52.381 8.51 8.51 0.00 3.69
4861 10265 2.537401 CCGAACCTGAGTAAACCGATC 58.463 52.381 0.00 0.00 0.00 3.69
4862 10266 1.206371 CCCGAACCTGAGTAAACCGAT 59.794 52.381 0.00 0.00 0.00 4.18
4863 10267 0.604578 CCCGAACCTGAGTAAACCGA 59.395 55.000 0.00 0.00 0.00 4.69
4895 10299 5.469084 CACCAAAGTAGGAGTGGAGTTTTAC 59.531 44.000 0.00 0.00 36.23 2.01
4904 10308 7.993183 ACATATAATTCCACCAAAGTAGGAGTG 59.007 37.037 0.00 0.00 32.11 3.51
4968 10372 3.215245 CTCTCCCGAGCTCCTTGG 58.785 66.667 8.47 6.70 34.87 3.61
5042 10446 3.906720 TGTGGTAGCCCTTTCATCTAC 57.093 47.619 0.00 0.00 33.72 2.59
5066 10471 6.719370 TCTGCCTTCTGTATTTACCATTTTGT 59.281 34.615 0.00 0.00 0.00 2.83
5115 10520 5.483937 TCATGTCCTATACCGCCAGAATTAT 59.516 40.000 0.00 0.00 0.00 1.28
5124 10529 6.854496 TTAAATGTTCATGTCCTATACCGC 57.146 37.500 0.00 0.00 0.00 5.68
5137 10542 6.663093 ACACCTAATGGAGCATTAAATGTTCA 59.337 34.615 0.00 0.00 41.60 3.18
5219 10624 4.499758 CGTGACGAAAGAATAAGAGGTAGC 59.500 45.833 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.