Multiple sequence alignment - TraesCS2D01G263800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G263800 chr2D 100.000 7763 0 0 1 7763 322865960 322858198 0.000000e+00 14336.0
1 TraesCS2D01G263800 chr2D 94.326 141 5 3 1 138 277929095 277929235 6.100000e-51 213.0
2 TraesCS2D01G263800 chr2D 89.655 58 5 1 2122 2178 199129708 199129651 1.080000e-08 73.1
3 TraesCS2D01G263800 chr2B 95.076 4915 130 21 2074 6936 390811052 390806198 0.000000e+00 7633.0
4 TraesCS2D01G263800 chr2B 93.430 1385 47 19 680 2048 390812657 390811301 0.000000e+00 2013.0
5 TraesCS2D01G263800 chr2B 87.538 666 32 20 7139 7763 390806069 390805414 0.000000e+00 723.0
6 TraesCS2D01G263800 chr2B 91.051 447 32 4 227 665 390813090 390812644 1.440000e-166 597.0
7 TraesCS2D01G263800 chr2B 95.000 140 5 2 1 140 103694710 103694573 1.310000e-52 219.0
8 TraesCS2D01G263800 chr2B 96.512 86 2 1 6955 7040 390806146 390806062 2.920000e-29 141.0
9 TraesCS2D01G263800 chr2B 73.913 345 68 19 1970 2302 247625843 247626177 1.370000e-22 119.0
10 TraesCS2D01G263800 chr2A 94.807 3890 106 31 3100 6933 408080553 408084402 0.000000e+00 5976.0
11 TraesCS2D01G263800 chr2A 93.413 2338 94 31 712 3022 408078248 408080552 0.000000e+00 3410.0
12 TraesCS2D01G263800 chr2A 93.708 445 18 3 7329 7763 408086836 408087280 0.000000e+00 658.0
13 TraesCS2D01G263800 chr2A 92.075 265 17 2 7078 7338 408084747 408085011 3.420000e-98 370.0
14 TraesCS2D01G263800 chr2A 95.556 135 5 1 6933 7067 408084478 408084611 1.700000e-51 215.0
15 TraesCS2D01G263800 chr7D 82.869 467 66 12 209 662 117544326 117544791 2.610000e-109 407.0
16 TraesCS2D01G263800 chr4A 82.159 454 65 13 221 665 613371079 613371525 7.350000e-100 375.0
17 TraesCS2D01G263800 chr4A 86.598 97 11 2 2138 2233 579105488 579105393 1.070000e-18 106.0
18 TraesCS2D01G263800 chr3A 80.952 483 82 7 192 665 103015700 103016181 2.640000e-99 374.0
19 TraesCS2D01G263800 chr3A 95.918 49 2 0 1971 2019 52322649 52322697 6.460000e-11 80.5
20 TraesCS2D01G263800 chr5D 85.634 355 39 8 315 665 390422305 390421959 5.730000e-96 363.0
21 TraesCS2D01G263800 chr5D 92.617 149 7 4 1 147 285170326 285170180 2.190000e-50 211.0
22 TraesCS2D01G263800 chr5D 80.556 180 29 6 1855 2031 410181772 410181596 4.890000e-27 134.0
23 TraesCS2D01G263800 chr5D 93.878 49 3 0 1970 2018 285545564 285545612 3.000000e-09 75.0
24 TraesCS2D01G263800 chr5D 88.889 54 5 1 1966 2018 447880329 447880382 1.810000e-06 65.8
25 TraesCS2D01G263800 chr5A 80.777 489 72 17 193 665 415159943 415159461 5.730000e-96 363.0
26 TraesCS2D01G263800 chr5A 79.630 486 79 15 193 665 565762833 565762355 1.610000e-86 331.0
27 TraesCS2D01G263800 chr5A 96.947 131 2 2 1 130 407894603 407894474 1.310000e-52 219.0
28 TraesCS2D01G263800 chr4D 85.237 359 45 6 315 670 81965323 81964970 5.730000e-96 363.0
29 TraesCS2D01G263800 chr6D 81.591 440 69 10 234 665 454014557 454014122 3.450000e-93 353.0
30 TraesCS2D01G263800 chr3B 100.000 123 0 0 1 123 567241291 567241413 2.180000e-55 228.0
31 TraesCS2D01G263800 chr3B 95.556 135 4 2 1 135 494672478 494672346 1.700000e-51 215.0
32 TraesCS2D01G263800 chr7B 99.194 124 1 0 1 124 29155571 29155694 2.820000e-54 224.0
33 TraesCS2D01G263800 chr7B 97.674 129 2 1 1 128 511600408 511600280 3.650000e-53 220.0
34 TraesCS2D01G263800 chr7B 81.373 102 15 4 193 292 733486080 733485981 6.460000e-11 80.5
35 TraesCS2D01G263800 chr7B 100.000 28 0 0 680 707 161442389 161442416 1.400000e-02 52.8
36 TraesCS2D01G263800 chr1D 97.674 129 2 1 1 128 215059118 215059246 3.650000e-53 220.0
37 TraesCS2D01G263800 chr4B 76.082 485 65 14 210 665 386196983 386196521 1.020000e-48 206.0
38 TraesCS2D01G263800 chr7A 78.571 168 23 7 1858 2018 268888700 268888539 1.780000e-16 99.0
39 TraesCS2D01G263800 chr3D 93.220 59 4 0 1971 2029 40229863 40229921 3.860000e-13 87.9
40 TraesCS2D01G263800 chr3D 79.825 114 19 2 1888 1998 520727685 520727797 6.460000e-11 80.5
41 TraesCS2D01G263800 chr3D 100.000 28 0 0 680 707 42684245 42684218 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G263800 chr2D 322858198 322865960 7762 True 14336.0 14336 100.0000 1 7763 1 chr2D.!!$R2 7762
1 TraesCS2D01G263800 chr2B 390805414 390813090 7676 True 2221.4 7633 92.7214 227 7763 5 chr2B.!!$R2 7536
2 TraesCS2D01G263800 chr2A 408078248 408087280 9032 False 2125.8 5976 93.9118 712 7763 5 chr2A.!!$F1 7051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 462 0.034767 TGCATGGGAGAGCTTCTTGG 60.035 55.000 0.00 0.0 0.00 3.61 F
2053 2094 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.0 0.00 4.17 F
2056 2097 0.392327 TGTGTGTGTGTGTGTGGGAG 60.392 55.000 0.00 0.0 0.00 4.30 F
3034 3297 0.037326 TCAACTGCTAGTTCCAGGCG 60.037 55.000 0.00 0.0 36.03 5.52 F
3041 3304 0.108186 CTAGTTCCAGGCGTGCATGA 60.108 55.000 10.93 0.0 0.00 3.07 F
3777 4045 1.003866 GCCAGTCGTTTGTTGAGTGTC 60.004 52.381 0.00 0.0 35.46 3.67 F
4968 5272 0.315869 GCGCCGATTTTGATACACCG 60.316 55.000 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2102 0.233332 GGCGCGAAATCTAGCATCAC 59.767 55.000 12.10 0.0 0.00 3.06 R
3024 3287 0.537143 TTTCATGCACGCCTGGAACT 60.537 50.000 0.00 0.0 0.00 3.01 R
3554 3820 1.073199 CCTCCCGGGGAATGCATAC 59.927 63.158 23.50 0.0 0.00 2.39 R
4764 5039 0.469705 AACAGATGGCCAAGGCACAA 60.470 50.000 10.96 0.0 41.84 3.33 R
4775 5050 5.359009 AGCATTTCATTACAGGAACAGATGG 59.641 40.000 0.00 0.0 0.00 3.51 R
5298 5602 1.229209 TGCTTCCTCCGACCTTCCT 60.229 57.895 0.00 0.0 0.00 3.36 R
6893 7222 0.176449 CAGATCATCCCACGAGCACA 59.824 55.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.902540 TGTTTTAGAGTTGTGTTGTGATATCT 57.097 30.769 3.98 0.00 0.00 1.98
46 47 9.337396 TGTTTTAGAGTTGTGTTGTGATATCTT 57.663 29.630 3.98 0.00 0.00 2.40
47 48 9.813080 GTTTTAGAGTTGTGTTGTGATATCTTC 57.187 33.333 3.98 0.00 0.00 2.87
48 49 8.547967 TTTAGAGTTGTGTTGTGATATCTTCC 57.452 34.615 3.98 0.00 0.00 3.46
49 50 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
50 51 4.253685 AGTTGTGTTGTGATATCTTCCCG 58.746 43.478 3.98 0.00 0.00 5.14
51 52 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
52 53 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
53 54 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
54 55 3.865745 GTGTTGTGATATCTTCCCGTGAG 59.134 47.826 3.98 0.00 0.00 3.51
55 56 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
56 57 4.113354 GTTGTGATATCTTCCCGTGAGTC 58.887 47.826 3.98 0.00 0.00 3.36
57 58 2.693591 TGTGATATCTTCCCGTGAGTCC 59.306 50.000 3.98 0.00 0.00 3.85
58 59 2.036089 GTGATATCTTCCCGTGAGTCCC 59.964 54.545 3.98 0.00 0.00 4.46
59 60 2.091278 TGATATCTTCCCGTGAGTCCCT 60.091 50.000 3.98 0.00 0.00 4.20
60 61 1.776662 TATCTTCCCGTGAGTCCCTG 58.223 55.000 0.00 0.00 0.00 4.45
61 62 0.041238 ATCTTCCCGTGAGTCCCTGA 59.959 55.000 0.00 0.00 0.00 3.86
62 63 0.041238 TCTTCCCGTGAGTCCCTGAT 59.959 55.000 0.00 0.00 0.00 2.90
63 64 0.461961 CTTCCCGTGAGTCCCTGATC 59.538 60.000 0.00 0.00 0.00 2.92
64 65 0.041238 TTCCCGTGAGTCCCTGATCT 59.959 55.000 0.00 0.00 0.00 2.75
65 66 0.041238 TCCCGTGAGTCCCTGATCTT 59.959 55.000 0.00 0.00 0.00 2.40
66 67 0.176680 CCCGTGAGTCCCTGATCTTG 59.823 60.000 0.00 0.00 0.00 3.02
67 68 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
68 69 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
69 70 2.223923 CCGTGAGTCCCTGATCTTGATC 60.224 54.545 3.82 3.82 0.00 2.92
70 71 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
71 72 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
72 73 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
73 74 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
74 75 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
75 76 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
76 77 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
77 78 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
78 79 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
79 80 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
80 81 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
81 82 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
82 83 1.717113 TCTTGATCGTACACGTTTGCG 59.283 47.619 5.81 5.81 44.93 4.85
94 95 2.525750 CGTTTGCGTGCATGATTAGT 57.474 45.000 10.93 0.00 0.00 2.24
95 96 2.168384 CGTTTGCGTGCATGATTAGTG 58.832 47.619 10.93 0.00 0.00 2.74
96 97 2.412716 CGTTTGCGTGCATGATTAGTGT 60.413 45.455 10.93 0.00 0.00 3.55
97 98 3.181525 CGTTTGCGTGCATGATTAGTGTA 60.182 43.478 10.93 0.00 0.00 2.90
98 99 4.494035 CGTTTGCGTGCATGATTAGTGTAT 60.494 41.667 10.93 0.00 0.00 2.29
99 100 4.534794 TTGCGTGCATGATTAGTGTATG 57.465 40.909 10.93 0.00 0.00 2.39
100 101 3.791245 TGCGTGCATGATTAGTGTATGA 58.209 40.909 10.93 0.00 0.00 2.15
101 102 4.379652 TGCGTGCATGATTAGTGTATGAT 58.620 39.130 10.93 0.00 0.00 2.45
102 103 4.815846 TGCGTGCATGATTAGTGTATGATT 59.184 37.500 10.93 0.00 0.00 2.57
103 104 5.142265 GCGTGCATGATTAGTGTATGATTG 58.858 41.667 10.93 0.00 0.00 2.67
104 105 5.050159 GCGTGCATGATTAGTGTATGATTGA 60.050 40.000 10.93 0.00 0.00 2.57
105 106 6.511605 GCGTGCATGATTAGTGTATGATTGAA 60.512 38.462 10.93 0.00 0.00 2.69
106 107 7.578852 CGTGCATGATTAGTGTATGATTGAAT 58.421 34.615 0.00 0.00 0.00 2.57
107 108 7.743400 CGTGCATGATTAGTGTATGATTGAATC 59.257 37.037 0.00 0.00 0.00 2.52
108 109 7.743400 GTGCATGATTAGTGTATGATTGAATCG 59.257 37.037 0.00 0.00 0.00 3.34
109 110 7.095102 TGCATGATTAGTGTATGATTGAATCGG 60.095 37.037 0.00 0.00 0.00 4.18
110 111 7.624974 GCATGATTAGTGTATGATTGAATCGGG 60.625 40.741 0.00 0.00 0.00 5.14
111 112 6.230472 TGATTAGTGTATGATTGAATCGGGG 58.770 40.000 0.18 0.00 0.00 5.73
112 113 3.492102 AGTGTATGATTGAATCGGGGG 57.508 47.619 0.18 0.00 0.00 5.40
113 114 1.880027 GTGTATGATTGAATCGGGGGC 59.120 52.381 0.18 0.00 0.00 5.80
114 115 1.156736 GTATGATTGAATCGGGGGCG 58.843 55.000 0.18 0.00 0.00 6.13
115 116 0.762418 TATGATTGAATCGGGGGCGT 59.238 50.000 0.18 0.00 0.00 5.68
116 117 0.535102 ATGATTGAATCGGGGGCGTC 60.535 55.000 0.18 0.00 0.00 5.19
117 118 1.153249 GATTGAATCGGGGGCGTCA 60.153 57.895 0.00 0.00 0.00 4.35
118 119 1.436983 GATTGAATCGGGGGCGTCAC 61.437 60.000 0.00 0.00 0.00 3.67
119 120 2.191786 ATTGAATCGGGGGCGTCACA 62.192 55.000 0.00 0.00 0.00 3.58
120 121 2.189521 GAATCGGGGGCGTCACAT 59.810 61.111 0.00 0.00 0.00 3.21
121 122 1.887707 GAATCGGGGGCGTCACATC 60.888 63.158 0.00 0.00 0.00 3.06
122 123 3.400599 AATCGGGGGCGTCACATCC 62.401 63.158 0.00 0.00 0.00 3.51
125 126 4.489771 GGGGGCGTCACATCCCTG 62.490 72.222 0.00 0.00 42.25 4.45
126 127 3.717294 GGGGCGTCACATCCCTGT 61.717 66.667 2.38 0.00 42.25 4.00
134 135 2.034687 ACATCCCTGTGGCTGCAC 59.965 61.111 0.50 0.00 33.22 4.57
135 136 2.753043 CATCCCTGTGGCTGCACC 60.753 66.667 0.50 0.00 39.84 5.01
136 137 4.415150 ATCCCTGTGGCTGCACCG 62.415 66.667 0.50 0.00 43.94 4.94
138 139 4.415150 CCCTGTGGCTGCACCGAT 62.415 66.667 0.50 0.00 43.94 4.18
139 140 2.821366 CCTGTGGCTGCACCGATC 60.821 66.667 0.50 0.00 43.94 3.69
140 141 2.821366 CTGTGGCTGCACCGATCC 60.821 66.667 0.50 0.00 43.94 3.36
141 142 4.758251 TGTGGCTGCACCGATCCG 62.758 66.667 0.50 0.00 43.94 4.18
175 176 3.470888 CCCCCTCGGGCAGTAGTG 61.471 72.222 0.00 0.00 44.50 2.74
187 188 4.814294 GTAGTGCCACGGCGGGAG 62.814 72.222 12.58 0.97 45.51 4.30
193 194 2.439701 CCACGGCGGGAGAGAGTA 60.440 66.667 12.58 0.00 0.00 2.59
194 195 1.828660 CCACGGCGGGAGAGAGTAT 60.829 63.158 12.58 0.00 0.00 2.12
195 196 0.536687 CCACGGCGGGAGAGAGTATA 60.537 60.000 12.58 0.00 0.00 1.47
196 197 1.535833 CACGGCGGGAGAGAGTATAT 58.464 55.000 13.24 0.00 0.00 0.86
197 198 1.887198 CACGGCGGGAGAGAGTATATT 59.113 52.381 13.24 0.00 0.00 1.28
198 199 2.296471 CACGGCGGGAGAGAGTATATTT 59.704 50.000 13.24 0.00 0.00 1.40
199 200 3.504906 CACGGCGGGAGAGAGTATATTTA 59.495 47.826 13.24 0.00 0.00 1.40
200 201 4.158025 CACGGCGGGAGAGAGTATATTTAT 59.842 45.833 13.24 0.00 0.00 1.40
201 202 5.356190 CACGGCGGGAGAGAGTATATTTATA 59.644 44.000 13.24 0.00 0.00 0.98
202 203 6.039493 CACGGCGGGAGAGAGTATATTTATAT 59.961 42.308 13.24 0.00 0.00 0.86
203 204 7.228108 CACGGCGGGAGAGAGTATATTTATATA 59.772 40.741 13.24 0.00 0.00 0.86
204 205 7.444792 ACGGCGGGAGAGAGTATATTTATATAG 59.555 40.741 13.24 0.00 0.00 1.31
205 206 7.094720 CGGCGGGAGAGAGTATATTTATATAGG 60.095 44.444 0.00 0.00 0.00 2.57
206 207 7.943447 GGCGGGAGAGAGTATATTTATATAGGA 59.057 40.741 0.00 0.00 0.00 2.94
207 208 9.352191 GCGGGAGAGAGTATATTTATATAGGAA 57.648 37.037 0.00 0.00 0.00 3.36
224 225 4.907879 AGGAAAATTTCTGATCGATGGC 57.092 40.909 0.54 0.00 0.00 4.40
225 226 4.530875 AGGAAAATTTCTGATCGATGGCT 58.469 39.130 0.54 0.00 0.00 4.75
232 233 1.134310 TCTGATCGATGGCTGCATGTT 60.134 47.619 0.54 0.00 0.00 2.71
233 234 1.263484 CTGATCGATGGCTGCATGTTC 59.737 52.381 0.54 0.00 0.00 3.18
241 242 4.692155 CGATGGCTGCATGTTCTATATTGA 59.308 41.667 0.50 0.00 0.00 2.57
243 244 6.536224 CGATGGCTGCATGTTCTATATTGATA 59.464 38.462 0.50 0.00 0.00 2.15
285 286 5.184864 TGCTTTATTTTGTCTATGTGGTGGG 59.815 40.000 0.00 0.00 0.00 4.61
293 294 0.327924 CTATGTGGTGGGAAGGTGCA 59.672 55.000 0.00 0.00 0.00 4.57
295 296 2.597510 GTGGTGGGAAGGTGCACC 60.598 66.667 29.22 29.22 38.15 5.01
306 307 4.142038 GGAAGGTGCACCGGATTAATATT 58.858 43.478 29.68 15.22 42.08 1.28
307 308 5.310451 GGAAGGTGCACCGGATTAATATTA 58.690 41.667 29.68 0.00 42.08 0.98
308 309 5.411669 GGAAGGTGCACCGGATTAATATTAG 59.588 44.000 29.68 0.00 42.08 1.73
309 310 5.818678 AGGTGCACCGGATTAATATTAGA 57.181 39.130 29.68 0.00 42.08 2.10
310 311 5.794894 AGGTGCACCGGATTAATATTAGAG 58.205 41.667 29.68 0.00 42.08 2.43
311 312 4.935808 GGTGCACCGGATTAATATTAGAGG 59.064 45.833 22.49 1.61 0.00 3.69
312 313 5.512576 GGTGCACCGGATTAATATTAGAGGT 60.513 44.000 22.49 2.17 0.00 3.85
313 314 6.295462 GGTGCACCGGATTAATATTAGAGGTA 60.295 42.308 22.49 0.00 0.00 3.08
314 315 7.328737 GTGCACCGGATTAATATTAGAGGTAT 58.671 38.462 9.46 0.00 0.00 2.73
315 316 7.822822 GTGCACCGGATTAATATTAGAGGTATT 59.177 37.037 9.46 0.00 0.00 1.89
317 318 7.822822 GCACCGGATTAATATTAGAGGTATTGT 59.177 37.037 9.46 0.00 0.00 2.71
382 390 8.369588 CGTAAACCAAATCCAAAATTGATTACG 58.630 33.333 15.20 15.20 40.80 3.18
384 392 7.883229 AACCAAATCCAAAATTGATTACGTC 57.117 32.000 0.00 0.00 0.00 4.34
398 406 7.490962 TTGATTACGTCAACTGAATGAAAGT 57.509 32.000 0.00 0.00 41.79 2.66
447 455 3.881937 AAAAGAATTGCATGGGAGAGC 57.118 42.857 0.00 0.00 0.00 4.09
449 457 2.822707 AGAATTGCATGGGAGAGCTT 57.177 45.000 0.00 0.00 0.00 3.74
454 462 0.034767 TGCATGGGAGAGCTTCTTGG 60.035 55.000 0.00 0.00 0.00 3.61
469 477 4.440112 GCTTCTTGGGAAATTATTGACCCG 60.440 45.833 13.03 3.77 44.70 5.28
470 478 4.577988 TCTTGGGAAATTATTGACCCGA 57.422 40.909 13.03 11.07 44.70 5.14
496 504 6.661377 TCAAAATCGGATGAACCAATCCTAAA 59.339 34.615 0.00 0.00 43.53 1.85
522 530 3.365472 AGACCCAATTAATTGTGAGGGC 58.635 45.455 23.24 19.54 36.06 5.19
541 549 7.276438 GTGAGGGCTTAAAAATTAGAAAGCATG 59.724 37.037 16.04 0.00 44.81 4.06
542 550 6.643388 AGGGCTTAAAAATTAGAAAGCATGG 58.357 36.000 16.04 0.00 44.81 3.66
578 587 6.988622 AGAATTGAATGAGAGAGCTTTGAG 57.011 37.500 0.00 0.00 0.00 3.02
593 602 3.857010 GCTTTGAGAAATTGTTGACCCGG 60.857 47.826 0.00 0.00 0.00 5.73
595 604 2.938838 TGAGAAATTGTTGACCCGGTT 58.061 42.857 0.00 0.00 0.00 4.44
615 624 5.741982 CGGTTAAAATCGGATGACCAAATTC 59.258 40.000 11.27 0.00 35.59 2.17
644 653 3.759581 AGACCTCAATTGAATGTGTGCT 58.240 40.909 9.88 1.45 0.00 4.40
645 654 4.147321 AGACCTCAATTGAATGTGTGCTT 58.853 39.130 9.88 0.00 0.00 3.91
665 674 7.450323 TGTGCTTTTTAAAACTAGGGAGCTTAT 59.550 33.333 16.77 0.00 0.00 1.73
666 675 8.304596 GTGCTTTTTAAAACTAGGGAGCTTATT 58.695 33.333 16.77 0.00 0.00 1.40
667 676 8.866093 TGCTTTTTAAAACTAGGGAGCTTATTT 58.134 29.630 16.77 0.00 0.00 1.40
668 677 9.706691 GCTTTTTAAAACTAGGGAGCTTATTTT 57.293 29.630 11.16 0.00 0.00 1.82
690 699 5.578157 TTTTTAAGGTGAACTAGGGAGCT 57.422 39.130 0.00 0.00 0.00 4.09
691 700 5.578157 TTTTAAGGTGAACTAGGGAGCTT 57.422 39.130 0.00 1.40 0.00 3.74
692 701 6.691255 TTTTAAGGTGAACTAGGGAGCTTA 57.309 37.500 0.00 0.44 0.00 3.09
693 702 6.691255 TTTAAGGTGAACTAGGGAGCTTAA 57.309 37.500 13.79 13.79 37.70 1.85
710 719 7.094592 GGGAGCTTAATGTTATAGAGGATTTGC 60.095 40.741 0.00 0.00 0.00 3.68
711 720 7.360438 GGAGCTTAATGTTATAGAGGATTTGCG 60.360 40.741 0.00 0.00 0.00 4.85
720 729 7.552687 TGTTATAGAGGATTTGCGAACAAGATT 59.447 33.333 0.00 0.00 37.04 2.40
821 838 3.561924 GACCCAACTTGCGTTGTGTCG 62.562 57.143 4.82 0.00 44.46 4.35
931 952 2.654079 CGTGGCAGCTCTTCCCTCT 61.654 63.158 0.00 0.00 0.00 3.69
1519 1540 5.986741 TCAAATAGTGCTTAGTTGTGTCGAA 59.013 36.000 8.21 0.00 38.25 3.71
1551 1572 6.487689 AAGTTGTCAGCTTTTCTATGTAGC 57.512 37.500 0.00 0.00 35.16 3.58
1662 1683 3.725740 CGTAATGCTTGATTTTCATCGCC 59.274 43.478 0.00 0.00 31.08 5.54
1829 1864 6.944290 ACATGTCATATATGGTCTGGAAATGG 59.056 38.462 12.78 0.00 0.00 3.16
1853 1888 6.268566 GGGAATTTCAGCACATTTAGATGAC 58.731 40.000 0.00 0.00 36.73 3.06
1865 1900 2.801077 TAGATGACACGAGGAGGACA 57.199 50.000 0.00 0.00 0.00 4.02
1918 1953 1.167851 CCTGCTGCCGAAGATTGAAA 58.832 50.000 0.00 0.00 0.00 2.69
2041 2082 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2045 2086 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2048 2089 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2049 2090 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2050 2091 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2051 2092 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2052 2093 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2053 2094 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
2054 2095 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
2055 2096 0.675208 GTGTGTGTGTGTGTGTGGGA 60.675 55.000 0.00 0.00 0.00 4.37
2056 2097 0.392327 TGTGTGTGTGTGTGTGGGAG 60.392 55.000 0.00 0.00 0.00 4.30
2106 2369 2.915869 GCCTATTCCTCCCCGCAA 59.084 61.111 0.00 0.00 0.00 4.85
2133 2396 0.402504 TATGCCGTGTCCCCTTTTGT 59.597 50.000 0.00 0.00 0.00 2.83
2206 2469 2.261215 CAGGTTCTGGGCTGCTTTC 58.739 57.895 0.00 0.00 0.00 2.62
2407 2670 2.685897 CACCAGACTACCAGAGAGCTAC 59.314 54.545 0.00 0.00 0.00 3.58
2474 2737 9.316730 GTAAACCGATAAATATGGTGTTCACTA 57.683 33.333 2.98 0.00 35.79 2.74
2482 2745 2.638480 TGGTGTTCACTAAAGCAGCT 57.362 45.000 0.00 0.00 0.00 4.24
2507 2770 4.828925 GCAGCCGCCTCAGACTCC 62.829 72.222 0.00 0.00 0.00 3.85
2566 2829 7.437748 GCTAGTCTAGGCTTTCTAATCATTGA 58.562 38.462 0.11 0.00 0.00 2.57
2616 2879 0.608856 TGCATGATGGAAACTGGCGT 60.609 50.000 0.00 0.00 0.00 5.68
2635 2898 1.813178 GTGGGCTTCTTTTCTAGCACC 59.187 52.381 0.00 0.00 40.09 5.01
2779 3042 3.243907 GGAGCTCGTCCAAAGTGCTATAT 60.244 47.826 7.83 0.00 46.10 0.86
2795 3058 3.511934 GCTATATAGGTGCTACAGCCTGT 59.488 47.826 11.72 1.54 41.18 4.00
2797 3060 5.511545 GCTATATAGGTGCTACAGCCTGTTT 60.512 44.000 1.02 0.00 41.18 2.83
2798 3061 3.721087 ATAGGTGCTACAGCCTGTTTT 57.279 42.857 1.02 0.00 41.18 2.43
2799 3062 2.364972 AGGTGCTACAGCCTGTTTTT 57.635 45.000 1.02 0.00 41.18 1.94
2924 3187 7.121315 GGATTGGTGAGCTTAGAAATTTAGTGT 59.879 37.037 0.00 0.00 0.00 3.55
2933 3196 7.824779 AGCTTAGAAATTTAGTGTCAAGTAGGG 59.175 37.037 0.00 0.00 0.00 3.53
3024 3287 4.640771 AGACTGGGAAATTCAACTGCTA 57.359 40.909 0.00 0.00 0.00 3.49
3034 3297 0.037326 TCAACTGCTAGTTCCAGGCG 60.037 55.000 0.00 0.00 36.03 5.52
3041 3304 0.108186 CTAGTTCCAGGCGTGCATGA 60.108 55.000 10.93 0.00 0.00 3.07
3081 3344 4.214332 GGTTGAGTTCTGAAAGTGGTCATC 59.786 45.833 0.00 0.00 33.76 2.92
3175 3439 7.264947 CCCAATAATGTTTCCTGGTTAATGAC 58.735 38.462 0.00 0.00 0.00 3.06
3302 3567 4.681074 TGAATTTGGGTGAAGGTTTTCC 57.319 40.909 0.00 0.00 41.05 3.13
3554 3820 3.181503 CCGCATCAGTTTGAGGATTTCTG 60.182 47.826 0.00 0.00 38.71 3.02
3555 3821 3.438087 CGCATCAGTTTGAGGATTTCTGT 59.562 43.478 0.00 0.00 27.97 3.41
3556 3822 4.631377 CGCATCAGTTTGAGGATTTCTGTA 59.369 41.667 0.00 0.00 27.97 2.74
3557 3823 5.295292 CGCATCAGTTTGAGGATTTCTGTAT 59.705 40.000 0.00 0.00 27.97 2.29
3558 3824 6.493116 GCATCAGTTTGAGGATTTCTGTATG 58.507 40.000 0.00 0.00 27.97 2.39
3559 3825 6.493116 CATCAGTTTGAGGATTTCTGTATGC 58.507 40.000 0.00 0.00 27.97 3.14
3560 3826 5.559770 TCAGTTTGAGGATTTCTGTATGCA 58.440 37.500 0.00 0.00 0.00 3.96
3561 3827 6.182627 TCAGTTTGAGGATTTCTGTATGCAT 58.817 36.000 3.79 3.79 0.00 3.96
3562 3828 6.660521 TCAGTTTGAGGATTTCTGTATGCATT 59.339 34.615 3.54 0.00 0.00 3.56
3563 3829 6.971184 CAGTTTGAGGATTTCTGTATGCATTC 59.029 38.462 3.54 0.00 0.00 2.67
3564 3830 6.096001 AGTTTGAGGATTTCTGTATGCATTCC 59.904 38.462 3.54 3.54 0.00 3.01
3565 3831 4.464008 TGAGGATTTCTGTATGCATTCCC 58.536 43.478 3.54 0.00 0.00 3.97
3566 3832 3.823304 GAGGATTTCTGTATGCATTCCCC 59.177 47.826 3.54 0.00 0.00 4.81
3567 3833 2.554032 GGATTTCTGTATGCATTCCCCG 59.446 50.000 3.54 0.00 0.00 5.73
3636 3902 9.438291 GTGTTTCATTTCGGATTATCATGTAAG 57.562 33.333 0.00 0.00 0.00 2.34
3777 4045 1.003866 GCCAGTCGTTTGTTGAGTGTC 60.004 52.381 0.00 0.00 35.46 3.67
3778 4046 2.550978 CCAGTCGTTTGTTGAGTGTCT 58.449 47.619 0.00 0.00 35.46 3.41
3779 4047 2.285220 CCAGTCGTTTGTTGAGTGTCTG 59.715 50.000 0.00 0.00 35.46 3.51
3791 4064 7.275888 TGTTGAGTGTCTGCAATAAGATTTT 57.724 32.000 0.00 0.00 0.00 1.82
3866 4139 3.553105 GCCTGCTTATAGTTGCATTTTGC 59.447 43.478 0.00 0.00 45.29 3.68
3893 4166 6.406370 TGGTGACTGTTGATAAGATAAGTGG 58.594 40.000 0.00 0.00 0.00 4.00
3953 4226 8.967664 ATATAAAACTGTTAAATGCGGGACTA 57.032 30.769 0.00 0.00 0.00 2.59
4284 4557 3.817647 CAGTGGAAAGAGGAGAACAAAGG 59.182 47.826 0.00 0.00 0.00 3.11
4396 4669 3.445096 GGCAGCAAGGAGTGTTAATCATT 59.555 43.478 0.00 0.00 0.00 2.57
4465 4738 6.410942 ACCTTGAGGAAGAAAATTTTGGAG 57.589 37.500 8.47 0.00 38.94 3.86
4510 4783 3.436015 CACATTCTGAAGAGCTGAGGTTG 59.564 47.826 0.00 0.00 0.00 3.77
4596 4869 2.093235 GGCTTCAGCTTAGTGACTCCAT 60.093 50.000 0.00 0.00 41.70 3.41
4764 5039 8.584157 TGAAAAAGGCACATACTTGTTGATTAT 58.416 29.630 0.00 0.00 32.34 1.28
4775 5050 3.591196 TGTTGATTATTGTGCCTTGGC 57.409 42.857 4.43 4.43 0.00 4.52
4891 5195 9.859427 CAAAATTTGATATTTCAGCTGGACTTA 57.141 29.630 15.13 0.00 32.27 2.24
4968 5272 0.315869 GCGCCGATTTTGATACACCG 60.316 55.000 0.00 0.00 0.00 4.94
4979 5283 5.654603 TTTGATACACCGTCTCACAGTAT 57.345 39.130 0.00 0.00 0.00 2.12
5005 5309 4.487714 TTCCCAAGATATCAGTGTCACC 57.512 45.455 5.32 0.00 0.00 4.02
5145 5449 3.392947 TCTGGTTGGGTGTTGTATTCTCA 59.607 43.478 0.00 0.00 0.00 3.27
5202 5506 6.460781 TGCTGATTTTGATGCTTCAGAATTT 58.539 32.000 16.42 0.50 36.95 1.82
5274 5578 1.078214 CGAGGATCTTGCCTGCCAA 60.078 57.895 0.00 0.00 38.73 4.52
5526 5830 3.564225 CGAAGTTATCCATAACCAAGGCC 59.436 47.826 0.00 0.00 42.71 5.19
5563 5867 6.678409 GCATACGGTATGTCTAGCCTTATCTC 60.678 46.154 24.64 4.07 38.43 2.75
5689 6002 5.241506 GTGGATGTGTGATTATGGTTATGGG 59.758 44.000 0.00 0.00 0.00 4.00
5692 6005 6.239008 GGATGTGTGATTATGGTTATGGGTTG 60.239 42.308 0.00 0.00 0.00 3.77
5694 6007 6.249192 TGTGTGATTATGGTTATGGGTTGAA 58.751 36.000 0.00 0.00 0.00 2.69
5739 6052 4.194640 TGGCATATGCTCTTTGTCTTCTC 58.805 43.478 26.12 6.26 41.70 2.87
5762 6075 9.117183 TCTCTTTCATTTGTCTCATTGATATGG 57.883 33.333 0.00 0.00 32.40 2.74
6335 6649 5.737497 CGATATTTCGTTGTTGGGAGACCC 61.737 50.000 0.00 0.00 45.15 4.46
6498 6815 1.401905 GTCGGAAACAATGATGGCCTC 59.598 52.381 3.32 0.00 0.00 4.70
6507 6824 0.107897 ATGATGGCCTCGTAAACGCA 60.108 50.000 3.32 0.00 39.60 5.24
6608 6925 4.385825 ACGGTATGGTTACATATTGGCAG 58.614 43.478 0.00 0.00 41.34 4.85
6616 6935 4.811557 GGTTACATATTGGCAGTGACTCTC 59.188 45.833 0.00 0.00 0.00 3.20
6617 6936 3.170791 ACATATTGGCAGTGACTCTCG 57.829 47.619 0.00 0.00 0.00 4.04
6863 7192 6.913170 TCAGATTTGACATAAGTTTTGGCTC 58.087 36.000 0.68 0.00 0.00 4.70
6893 7222 6.563222 TTTTGTCGGTCCGAAGAATTTTAT 57.437 33.333 17.32 0.00 37.72 1.40
6894 7223 5.539582 TTGTCGGTCCGAAGAATTTTATG 57.460 39.130 17.32 0.00 37.72 1.90
6895 7224 4.571919 TGTCGGTCCGAAGAATTTTATGT 58.428 39.130 17.32 0.00 37.72 2.29
6896 7225 4.390603 TGTCGGTCCGAAGAATTTTATGTG 59.609 41.667 17.32 0.00 37.72 3.21
6897 7226 3.372822 TCGGTCCGAAGAATTTTATGTGC 59.627 43.478 12.68 0.00 31.06 4.57
6898 7227 3.374058 CGGTCCGAAGAATTTTATGTGCT 59.626 43.478 4.91 0.00 0.00 4.40
6899 7228 4.494199 CGGTCCGAAGAATTTTATGTGCTC 60.494 45.833 4.91 0.00 0.00 4.26
6900 7229 4.494199 GGTCCGAAGAATTTTATGTGCTCG 60.494 45.833 0.00 0.00 0.00 5.03
6908 7245 3.342377 TTTTATGTGCTCGTGGGATGA 57.658 42.857 0.00 0.00 0.00 2.92
6936 7273 6.204688 TGAGTAAACTGGAATAGCTTGTGTTG 59.795 38.462 0.00 0.00 0.00 3.33
6937 7274 6.062095 AGTAAACTGGAATAGCTTGTGTTGT 58.938 36.000 0.00 0.00 0.00 3.32
6940 7353 4.460263 ACTGGAATAGCTTGTGTTGTGAA 58.540 39.130 0.00 0.00 0.00 3.18
6946 7359 2.102578 AGCTTGTGTTGTGAAGGCTTT 58.897 42.857 0.00 0.00 0.00 3.51
7100 7638 3.006677 GGCCAGGCTCAATGGGTA 58.993 61.111 12.43 0.00 38.33 3.69
7106 7644 1.127343 AGGCTCAATGGGTAGCTCTC 58.873 55.000 0.00 0.00 38.80 3.20
7108 7646 0.747255 GCTCAATGGGTAGCTCTCGA 59.253 55.000 0.00 0.00 35.80 4.04
7119 7657 0.817634 AGCTCTCGATCTCGGTGAGG 60.818 60.000 17.93 6.92 39.11 3.86
7148 7687 8.594687 GCATATATCGAACAAACAAATTGCTTT 58.405 29.630 0.00 0.00 43.13 3.51
7166 7705 5.867166 TGCTTTTTCTTGTGTGCATTTTTC 58.133 33.333 0.00 0.00 0.00 2.29
7257 7800 2.503356 GTCAGACAGGGATGGTTCATCT 59.497 50.000 7.68 0.00 40.39 2.90
7286 7829 7.441157 TGTTCTGTTCGTATTCAATTCTTCTGT 59.559 33.333 0.00 0.00 0.00 3.41
7287 7830 7.962964 TCTGTTCGTATTCAATTCTTCTGTT 57.037 32.000 0.00 0.00 0.00 3.16
7300 7843 3.952931 TCTTCTGTTCCTACGAGCTAGT 58.047 45.455 4.47 4.47 0.00 2.57
7303 7846 3.193263 TCTGTTCCTACGAGCTAGTACG 58.807 50.000 2.16 0.00 0.00 3.67
7310 7853 0.599558 ACGAGCTAGTACGCCACAAA 59.400 50.000 0.00 0.00 0.00 2.83
7343 9720 1.138247 GCCTGCAATCTCGGCTTTG 59.862 57.895 6.66 0.00 40.62 2.77
7356 9733 1.560505 GGCTTTGTCCAACCCATCAT 58.439 50.000 0.00 0.00 0.00 2.45
7394 9771 3.058160 CAAAGCCCCACCTGCTCG 61.058 66.667 0.00 0.00 38.34 5.03
7404 9781 0.736053 CACCTGCTCGTACTCCTCTC 59.264 60.000 0.00 0.00 0.00 3.20
7474 9881 1.291877 GCCTCGTGCACCTACACTTG 61.292 60.000 12.15 0.00 40.77 3.16
7570 9986 0.108756 GGAGCTACTTCGGTGACACC 60.109 60.000 15.13 15.13 34.05 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.507329 AGATATCACAACACAACTCTAAAACAT 57.493 29.630 5.32 0.00 0.00 2.71
20 21 8.902540 AGATATCACAACACAACTCTAAAACA 57.097 30.769 5.32 0.00 0.00 2.83
21 22 9.813080 GAAGATATCACAACACAACTCTAAAAC 57.187 33.333 5.32 0.00 0.00 2.43
22 23 8.999431 GGAAGATATCACAACACAACTCTAAAA 58.001 33.333 5.32 0.00 0.00 1.52
23 24 7.606456 GGGAAGATATCACAACACAACTCTAAA 59.394 37.037 5.32 0.00 0.00 1.85
24 25 7.103641 GGGAAGATATCACAACACAACTCTAA 58.896 38.462 5.32 0.00 0.00 2.10
25 26 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
26 27 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
27 28 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
28 29 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
29 30 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
30 31 4.000325 CACGGGAAGATATCACAACACAA 59.000 43.478 5.32 0.00 0.00 3.33
31 32 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
32 33 3.857052 TCACGGGAAGATATCACAACAC 58.143 45.455 5.32 0.00 0.00 3.32
33 34 3.513912 ACTCACGGGAAGATATCACAACA 59.486 43.478 5.32 0.00 0.00 3.33
34 35 4.113354 GACTCACGGGAAGATATCACAAC 58.887 47.826 5.32 0.00 0.00 3.32
35 36 3.132289 GGACTCACGGGAAGATATCACAA 59.868 47.826 5.32 0.00 0.00 3.33
36 37 2.693591 GGACTCACGGGAAGATATCACA 59.306 50.000 5.32 0.00 0.00 3.58
37 38 2.036089 GGGACTCACGGGAAGATATCAC 59.964 54.545 5.32 0.00 0.00 3.06
38 39 2.091278 AGGGACTCACGGGAAGATATCA 60.091 50.000 5.32 0.00 0.00 2.15
39 40 2.297597 CAGGGACTCACGGGAAGATATC 59.702 54.545 0.00 0.00 34.60 1.63
40 41 2.091278 TCAGGGACTCACGGGAAGATAT 60.091 50.000 0.00 0.00 34.60 1.63
41 42 1.286849 TCAGGGACTCACGGGAAGATA 59.713 52.381 0.00 0.00 34.60 1.98
42 43 0.041238 TCAGGGACTCACGGGAAGAT 59.959 55.000 0.00 0.00 34.60 2.40
43 44 0.041238 ATCAGGGACTCACGGGAAGA 59.959 55.000 0.00 0.00 34.60 2.87
44 45 0.461961 GATCAGGGACTCACGGGAAG 59.538 60.000 0.00 0.00 34.60 3.46
45 46 0.041238 AGATCAGGGACTCACGGGAA 59.959 55.000 0.00 0.00 34.60 3.97
46 47 0.041238 AAGATCAGGGACTCACGGGA 59.959 55.000 0.00 0.00 34.60 5.14
47 48 0.176680 CAAGATCAGGGACTCACGGG 59.823 60.000 0.00 0.00 34.60 5.28
48 49 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
49 50 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
50 51 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
51 52 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
52 53 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
53 54 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
54 55 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
55 56 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
56 57 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
57 58 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
58 59 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
59 60 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
60 61 3.539592 CGCAAACGTGTACGATCAAGATC 60.540 47.826 11.79 0.00 43.02 2.75
61 62 2.344441 CGCAAACGTGTACGATCAAGAT 59.656 45.455 11.79 0.00 43.02 2.40
62 63 1.717113 CGCAAACGTGTACGATCAAGA 59.283 47.619 11.79 0.00 43.02 3.02
63 64 2.125168 CGCAAACGTGTACGATCAAG 57.875 50.000 11.79 0.00 43.02 3.02
76 77 3.201726 ACACTAATCATGCACGCAAAC 57.798 42.857 0.00 0.00 0.00 2.93
77 78 4.633565 TCATACACTAATCATGCACGCAAA 59.366 37.500 0.00 0.00 0.00 3.68
78 79 4.187694 TCATACACTAATCATGCACGCAA 58.812 39.130 0.00 0.00 0.00 4.85
79 80 3.791245 TCATACACTAATCATGCACGCA 58.209 40.909 0.00 0.00 0.00 5.24
80 81 4.997905 ATCATACACTAATCATGCACGC 57.002 40.909 0.00 0.00 0.00 5.34
81 82 6.529463 TCAATCATACACTAATCATGCACG 57.471 37.500 0.00 0.00 0.00 5.34
82 83 7.743400 CGATTCAATCATACACTAATCATGCAC 59.257 37.037 0.00 0.00 0.00 4.57
83 84 7.095102 CCGATTCAATCATACACTAATCATGCA 60.095 37.037 0.00 0.00 0.00 3.96
84 85 7.239271 CCGATTCAATCATACACTAATCATGC 58.761 38.462 0.00 0.00 0.00 4.06
85 86 7.148356 CCCCGATTCAATCATACACTAATCATG 60.148 40.741 0.00 0.00 0.00 3.07
86 87 6.881065 CCCCGATTCAATCATACACTAATCAT 59.119 38.462 0.00 0.00 0.00 2.45
87 88 6.230472 CCCCGATTCAATCATACACTAATCA 58.770 40.000 0.00 0.00 0.00 2.57
88 89 5.643777 CCCCCGATTCAATCATACACTAATC 59.356 44.000 0.00 0.00 0.00 1.75
89 90 5.560724 CCCCCGATTCAATCATACACTAAT 58.439 41.667 0.00 0.00 0.00 1.73
90 91 4.745478 GCCCCCGATTCAATCATACACTAA 60.745 45.833 0.00 0.00 0.00 2.24
91 92 3.244422 GCCCCCGATTCAATCATACACTA 60.244 47.826 0.00 0.00 0.00 2.74
92 93 2.487265 GCCCCCGATTCAATCATACACT 60.487 50.000 0.00 0.00 0.00 3.55
93 94 1.880027 GCCCCCGATTCAATCATACAC 59.120 52.381 0.00 0.00 0.00 2.90
94 95 1.542328 CGCCCCCGATTCAATCATACA 60.542 52.381 0.00 0.00 36.29 2.29
95 96 1.156736 CGCCCCCGATTCAATCATAC 58.843 55.000 0.00 0.00 36.29 2.39
96 97 0.762418 ACGCCCCCGATTCAATCATA 59.238 50.000 0.00 0.00 38.29 2.15
97 98 0.535102 GACGCCCCCGATTCAATCAT 60.535 55.000 0.00 0.00 38.29 2.45
98 99 1.153249 GACGCCCCCGATTCAATCA 60.153 57.895 0.00 0.00 38.29 2.57
99 100 1.153249 TGACGCCCCCGATTCAATC 60.153 57.895 0.00 0.00 38.29 2.67
100 101 1.451387 GTGACGCCCCCGATTCAAT 60.451 57.895 0.00 0.00 38.29 2.57
101 102 2.046700 GTGACGCCCCCGATTCAA 60.047 61.111 0.00 0.00 38.29 2.69
102 103 2.587322 GATGTGACGCCCCCGATTCA 62.587 60.000 0.00 0.00 38.29 2.57
103 104 1.887707 GATGTGACGCCCCCGATTC 60.888 63.158 0.00 0.00 38.29 2.52
104 105 2.189521 GATGTGACGCCCCCGATT 59.810 61.111 0.00 0.00 38.29 3.34
105 106 3.861797 GGATGTGACGCCCCCGAT 61.862 66.667 0.00 0.00 38.29 4.18
108 109 4.489771 CAGGGATGTGACGCCCCC 62.490 72.222 9.40 4.41 45.89 5.40
109 110 3.717294 ACAGGGATGTGACGCCCC 61.717 66.667 9.40 6.83 45.89 5.80
110 111 2.436646 CACAGGGATGTGACGCCC 60.437 66.667 5.29 5.29 45.04 6.13
111 112 2.436646 CCACAGGGATGTGACGCC 60.437 66.667 9.86 0.00 42.02 5.68
112 113 3.127533 GCCACAGGGATGTGACGC 61.128 66.667 9.86 2.36 42.02 5.19
113 114 1.742880 CAGCCACAGGGATGTGACG 60.743 63.158 9.86 0.00 45.62 4.35
114 115 4.308526 CAGCCACAGGGATGTGAC 57.691 61.111 9.86 0.00 45.62 3.67
119 120 4.415150 CGGTGCAGCCACAGGGAT 62.415 66.667 10.90 0.00 43.88 3.85
121 122 4.415150 ATCGGTGCAGCCACAGGG 62.415 66.667 10.90 0.00 43.88 4.45
122 123 2.821366 GATCGGTGCAGCCACAGG 60.821 66.667 10.90 0.00 43.88 4.00
123 124 2.821366 GGATCGGTGCAGCCACAG 60.821 66.667 10.90 0.00 43.88 3.66
124 125 4.758251 CGGATCGGTGCAGCCACA 62.758 66.667 10.90 0.00 43.88 4.17
170 171 4.814294 CTCCCGCCGTGGCACTAC 62.814 72.222 16.72 6.38 42.06 2.73
176 177 0.536687 TATACTCTCTCCCGCCGTGG 60.537 60.000 0.00 0.00 37.55 4.94
177 178 1.535833 ATATACTCTCTCCCGCCGTG 58.464 55.000 0.00 0.00 0.00 4.94
178 179 2.289592 AATATACTCTCTCCCGCCGT 57.710 50.000 0.00 0.00 0.00 5.68
179 180 4.985538 ATAAATATACTCTCTCCCGCCG 57.014 45.455 0.00 0.00 0.00 6.46
180 181 7.943447 TCCTATATAAATATACTCTCTCCCGCC 59.057 40.741 0.00 0.00 0.00 6.13
181 182 8.921353 TCCTATATAAATATACTCTCTCCCGC 57.079 38.462 0.00 0.00 0.00 6.13
198 199 9.383519 GCCATCGATCAGAAATTTTCCTATATA 57.616 33.333 5.52 0.00 0.00 0.86
199 200 8.105829 AGCCATCGATCAGAAATTTTCCTATAT 58.894 33.333 5.52 0.00 0.00 0.86
200 201 7.388776 CAGCCATCGATCAGAAATTTTCCTATA 59.611 37.037 5.52 0.00 0.00 1.31
201 202 6.206243 CAGCCATCGATCAGAAATTTTCCTAT 59.794 38.462 5.52 0.15 0.00 2.57
202 203 5.528690 CAGCCATCGATCAGAAATTTTCCTA 59.471 40.000 5.52 0.00 0.00 2.94
203 204 4.337555 CAGCCATCGATCAGAAATTTTCCT 59.662 41.667 5.52 0.00 0.00 3.36
204 205 4.604976 CAGCCATCGATCAGAAATTTTCC 58.395 43.478 5.52 0.00 0.00 3.13
205 206 4.040376 GCAGCCATCGATCAGAAATTTTC 58.960 43.478 0.00 0.66 0.00 2.29
206 207 3.444742 TGCAGCCATCGATCAGAAATTTT 59.555 39.130 0.00 0.00 0.00 1.82
207 208 3.018856 TGCAGCCATCGATCAGAAATTT 58.981 40.909 0.00 0.00 0.00 1.82
208 209 2.646930 TGCAGCCATCGATCAGAAATT 58.353 42.857 0.00 0.00 0.00 1.82
209 210 2.336945 TGCAGCCATCGATCAGAAAT 57.663 45.000 0.00 0.00 0.00 2.17
210 211 1.944709 CATGCAGCCATCGATCAGAAA 59.055 47.619 0.00 0.00 0.00 2.52
211 212 1.134310 ACATGCAGCCATCGATCAGAA 60.134 47.619 0.00 0.00 0.00 3.02
212 213 0.466963 ACATGCAGCCATCGATCAGA 59.533 50.000 0.00 0.00 0.00 3.27
213 214 1.263484 GAACATGCAGCCATCGATCAG 59.737 52.381 0.00 0.00 0.00 2.90
214 215 1.134310 AGAACATGCAGCCATCGATCA 60.134 47.619 0.00 0.00 0.00 2.92
215 216 1.590932 AGAACATGCAGCCATCGATC 58.409 50.000 0.00 0.00 0.00 3.69
216 217 2.916702 TAGAACATGCAGCCATCGAT 57.083 45.000 0.00 0.00 0.00 3.59
217 218 2.916702 ATAGAACATGCAGCCATCGA 57.083 45.000 0.00 0.00 0.00 3.59
218 219 4.692155 TCAATATAGAACATGCAGCCATCG 59.308 41.667 0.00 0.00 0.00 3.84
219 220 6.754702 ATCAATATAGAACATGCAGCCATC 57.245 37.500 0.00 0.00 0.00 3.51
220 221 8.818622 AATATCAATATAGAACATGCAGCCAT 57.181 30.769 0.00 0.00 0.00 4.40
221 222 9.166173 GTAATATCAATATAGAACATGCAGCCA 57.834 33.333 0.00 0.00 0.00 4.75
222 223 9.166173 TGTAATATCAATATAGAACATGCAGCC 57.834 33.333 0.00 0.00 0.00 4.85
253 254 9.577110 ACATAGACAAAATAAAGCAATCATGTG 57.423 29.630 0.00 0.00 0.00 3.21
285 286 6.228258 TCTAATATTAATCCGGTGCACCTTC 58.772 40.000 32.28 7.95 0.00 3.46
293 294 9.720769 CAACAATACCTCTAATATTAATCCGGT 57.279 33.333 0.00 3.89 0.00 5.28
295 296 9.436957 AGCAACAATACCTCTAATATTAATCCG 57.563 33.333 0.00 0.00 0.00 4.18
306 307 5.939764 ATCAGTCAGCAACAATACCTCTA 57.060 39.130 0.00 0.00 0.00 2.43
307 308 4.833478 ATCAGTCAGCAACAATACCTCT 57.167 40.909 0.00 0.00 0.00 3.69
308 309 5.412594 TCAAATCAGTCAGCAACAATACCTC 59.587 40.000 0.00 0.00 0.00 3.85
309 310 5.316167 TCAAATCAGTCAGCAACAATACCT 58.684 37.500 0.00 0.00 0.00 3.08
310 311 5.627499 TCAAATCAGTCAGCAACAATACC 57.373 39.130 0.00 0.00 0.00 2.73
311 312 7.928908 TTTTCAAATCAGTCAGCAACAATAC 57.071 32.000 0.00 0.00 0.00 1.89
312 313 9.545105 AATTTTTCAAATCAGTCAGCAACAATA 57.455 25.926 0.00 0.00 0.00 1.90
313 314 8.441312 AATTTTTCAAATCAGTCAGCAACAAT 57.559 26.923 0.00 0.00 0.00 2.71
314 315 7.846644 AATTTTTCAAATCAGTCAGCAACAA 57.153 28.000 0.00 0.00 0.00 2.83
315 316 9.545105 AATAATTTTTCAAATCAGTCAGCAACA 57.455 25.926 0.00 0.00 0.00 3.33
317 318 8.991026 CCAATAATTTTTCAAATCAGTCAGCAA 58.009 29.630 0.00 0.00 0.00 3.91
357 365 9.198837 ACGTAATCAATTTTGGATTTGGTTTAC 57.801 29.630 0.00 0.00 36.45 2.01
382 390 5.173774 TGAAGCACTTTCATTCAGTTGAC 57.826 39.130 0.00 0.00 40.82 3.18
384 392 6.890663 TTTTGAAGCACTTTCATTCAGTTG 57.109 33.333 0.00 0.00 44.90 3.16
425 433 4.643784 AGCTCTCCCATGCAATTCTTTTAG 59.356 41.667 0.00 0.00 0.00 1.85
440 448 2.816777 ATTTCCCAAGAAGCTCTCCC 57.183 50.000 0.00 0.00 32.35 4.30
447 455 4.947388 TCGGGTCAATAATTTCCCAAGAAG 59.053 41.667 0.00 0.00 39.87 2.85
449 457 4.577988 TCGGGTCAATAATTTCCCAAGA 57.422 40.909 0.00 0.00 39.87 3.02
454 462 6.636850 CGATTTTGATCGGGTCAATAATTTCC 59.363 38.462 4.24 0.00 45.77 3.13
469 477 5.300286 AGGATTGGTTCATCCGATTTTGATC 59.700 40.000 0.00 0.00 40.23 2.92
470 478 5.203528 AGGATTGGTTCATCCGATTTTGAT 58.796 37.500 0.00 0.00 40.23 2.57
496 504 6.155049 CCCTCACAATTAATTGGGTCTTCAAT 59.845 38.462 25.80 3.72 41.80 2.57
578 587 5.343860 CGATTTTAACCGGGTCAACAATTTC 59.656 40.000 6.32 0.00 0.00 2.17
668 677 5.578157 AGCTCCCTAGTTCACCTTAAAAA 57.422 39.130 0.00 0.00 0.00 1.94
669 678 5.578157 AAGCTCCCTAGTTCACCTTAAAA 57.422 39.130 0.00 0.00 0.00 1.52
670 679 6.691255 TTAAGCTCCCTAGTTCACCTTAAA 57.309 37.500 0.00 0.00 0.00 1.52
671 680 6.214819 ACATTAAGCTCCCTAGTTCACCTTAA 59.785 38.462 0.00 0.00 0.00 1.85
672 681 5.724854 ACATTAAGCTCCCTAGTTCACCTTA 59.275 40.000 0.00 0.00 0.00 2.69
673 682 4.536489 ACATTAAGCTCCCTAGTTCACCTT 59.464 41.667 0.00 0.00 0.00 3.50
674 683 4.104831 ACATTAAGCTCCCTAGTTCACCT 58.895 43.478 0.00 0.00 0.00 4.00
675 684 4.489306 ACATTAAGCTCCCTAGTTCACC 57.511 45.455 0.00 0.00 0.00 4.02
676 685 8.639761 TCTATAACATTAAGCTCCCTAGTTCAC 58.360 37.037 0.00 0.00 0.00 3.18
677 686 8.777578 TCTATAACATTAAGCTCCCTAGTTCA 57.222 34.615 0.00 0.00 0.00 3.18
678 687 8.308207 CCTCTATAACATTAAGCTCCCTAGTTC 58.692 40.741 0.00 0.00 0.00 3.01
679 688 8.011290 TCCTCTATAACATTAAGCTCCCTAGTT 58.989 37.037 0.00 0.00 0.00 2.24
680 689 7.536625 TCCTCTATAACATTAAGCTCCCTAGT 58.463 38.462 0.00 0.00 0.00 2.57
681 690 8.602472 ATCCTCTATAACATTAAGCTCCCTAG 57.398 38.462 0.00 0.00 0.00 3.02
682 691 8.974292 AATCCTCTATAACATTAAGCTCCCTA 57.026 34.615 0.00 0.00 0.00 3.53
683 692 7.880265 AATCCTCTATAACATTAAGCTCCCT 57.120 36.000 0.00 0.00 0.00 4.20
684 693 7.094592 GCAAATCCTCTATAACATTAAGCTCCC 60.095 40.741 0.00 0.00 0.00 4.30
685 694 7.360438 CGCAAATCCTCTATAACATTAAGCTCC 60.360 40.741 0.00 0.00 0.00 4.70
686 695 7.385205 TCGCAAATCCTCTATAACATTAAGCTC 59.615 37.037 0.00 0.00 0.00 4.09
687 696 7.217200 TCGCAAATCCTCTATAACATTAAGCT 58.783 34.615 0.00 0.00 0.00 3.74
688 697 7.421530 TCGCAAATCCTCTATAACATTAAGC 57.578 36.000 0.00 0.00 0.00 3.09
689 698 8.826710 TGTTCGCAAATCCTCTATAACATTAAG 58.173 33.333 0.00 0.00 0.00 1.85
690 699 8.725405 TGTTCGCAAATCCTCTATAACATTAA 57.275 30.769 0.00 0.00 0.00 1.40
691 700 8.725405 TTGTTCGCAAATCCTCTATAACATTA 57.275 30.769 0.00 0.00 33.58 1.90
692 701 7.552687 TCTTGTTCGCAAATCCTCTATAACATT 59.447 33.333 0.00 0.00 36.56 2.71
693 702 7.047891 TCTTGTTCGCAAATCCTCTATAACAT 58.952 34.615 0.00 0.00 36.56 2.71
925 946 2.015726 GAGGAGGGGAGGAGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
931 952 4.779733 GCGTGGAGGAGGGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
1519 1540 4.363991 AAGCTGACAACTTTGATCCTCT 57.636 40.909 0.00 0.00 0.00 3.69
1662 1683 1.506493 AGAACAAGAGCAACTCAGCG 58.494 50.000 0.00 0.00 40.15 5.18
1704 1726 6.526566 CTAAACTATTTAGCCCGCTACTTG 57.473 41.667 0.00 0.00 36.54 3.16
1731 1753 0.624500 ATAGCTTCTGGGGAAGGCCA 60.625 55.000 5.01 0.00 46.49 5.36
1829 1864 6.127647 TGTCATCTAAATGTGCTGAAATTCCC 60.128 38.462 0.00 0.00 34.32 3.97
1853 1888 1.213013 CCGTCTTGTCCTCCTCGTG 59.787 63.158 0.00 0.00 0.00 4.35
1865 1900 2.683867 CCGTCATCTTCTACTCCGTCTT 59.316 50.000 0.00 0.00 0.00 3.01
1875 1910 0.827368 GCTTCTCCCCGTCATCTTCT 59.173 55.000 0.00 0.00 0.00 2.85
1881 1916 2.203788 ACCTGCTTCTCCCCGTCA 60.204 61.111 0.00 0.00 0.00 4.35
2041 2082 2.751731 CCCCTCCCACACACACACA 61.752 63.158 0.00 0.00 0.00 3.72
2061 2102 0.233332 GGCGCGAAATCTAGCATCAC 59.767 55.000 12.10 0.00 0.00 3.06
2133 2396 1.379176 AGCTAGGCTGAGTCGAGCA 60.379 57.895 20.71 0.00 41.08 4.26
2206 2469 0.583438 CTCACACGCTCACAAACCTG 59.417 55.000 0.00 0.00 0.00 4.00
2271 2534 1.750399 CATCCCTCAAACAGGCCCG 60.750 63.158 0.00 0.00 41.80 6.13
2455 2718 7.857885 GCTGCTTTAGTGAACACCATATTTATC 59.142 37.037 1.11 0.00 0.00 1.75
2507 2770 0.593128 CTCCACCCAAAAAGACTGCG 59.407 55.000 0.00 0.00 0.00 5.18
2514 2777 3.053077 TCCTCTCTTCTCCACCCAAAAA 58.947 45.455 0.00 0.00 0.00 1.94
2566 2829 6.156083 CCAAAACCCAATCCATAAACCAGTAT 59.844 38.462 0.00 0.00 0.00 2.12
2568 2831 4.285775 CCAAAACCCAATCCATAAACCAGT 59.714 41.667 0.00 0.00 0.00 4.00
2616 2879 1.271926 GGGTGCTAGAAAAGAAGCCCA 60.272 52.381 0.00 0.00 44.81 5.36
2635 2898 3.967332 ATTCCAAATTTGCCAGTCAGG 57.033 42.857 12.92 0.00 41.84 3.86
2767 3030 5.406780 GCTGTAGCACCTATATAGCACTTTG 59.593 44.000 4.04 0.00 41.59 2.77
2771 3034 3.511934 AGGCTGTAGCACCTATATAGCAC 59.488 47.826 4.04 0.00 44.36 4.40
2779 3042 3.502123 AAAAACAGGCTGTAGCACCTA 57.498 42.857 22.37 0.00 44.36 3.08
2799 3062 6.700960 CACATAGTTTCAAGCATGGACAAAAA 59.299 34.615 0.00 0.00 0.00 1.94
2804 3067 5.824904 ATCACATAGTTTCAAGCATGGAC 57.175 39.130 0.00 0.00 0.00 4.02
2924 3187 1.666553 CAACGCGCACCCTACTTGA 60.667 57.895 5.73 0.00 0.00 3.02
2933 3196 1.056869 CCCAAAATTACAACGCGCAC 58.943 50.000 5.73 0.00 0.00 5.34
3024 3287 0.537143 TTTCATGCACGCCTGGAACT 60.537 50.000 0.00 0.00 0.00 3.01
3034 3297 4.567959 GGCACCTTAATCAATTTCATGCAC 59.432 41.667 0.00 0.00 32.19 4.57
3041 3304 3.829601 TCAACCGGCACCTTAATCAATTT 59.170 39.130 0.00 0.00 0.00 1.82
3081 3344 6.949352 ATGCCATTCTAAATCAGTAAGGTG 57.051 37.500 0.00 0.00 0.00 4.00
3095 3358 6.183360 GGCAAACTTTCAGTATATGCCATTCT 60.183 38.462 17.15 0.00 44.82 2.40
3175 3439 1.473434 GGAGGCAAATCAGGGTACTCG 60.473 57.143 0.00 0.00 0.00 4.18
3302 3567 4.337145 AGATGTCCCTACGCCTATTCTAG 58.663 47.826 0.00 0.00 0.00 2.43
3320 3585 5.230182 GGGTTTAACTTTTGGCTCAAGATG 58.770 41.667 3.62 0.00 0.00 2.90
3428 3693 9.823647 CATTATTACCACATCTATCCCTGTATC 57.176 37.037 0.00 0.00 0.00 2.24
3554 3820 1.073199 CCTCCCGGGGAATGCATAC 59.927 63.158 23.50 0.00 0.00 2.39
3555 3821 3.574952 CCTCCCGGGGAATGCATA 58.425 61.111 23.50 0.00 0.00 3.14
3565 3831 1.789523 TCTTGTCTTATCCCTCCCGG 58.210 55.000 0.00 0.00 0.00 5.73
3566 3832 3.798202 CTTTCTTGTCTTATCCCTCCCG 58.202 50.000 0.00 0.00 0.00 5.14
3567 3833 3.201045 AGCTTTCTTGTCTTATCCCTCCC 59.799 47.826 0.00 0.00 0.00 4.30
3636 3902 3.851969 GCGCCACAAAACTTCTTATAAGC 59.148 43.478 7.67 0.00 0.00 3.09
3777 4045 8.273780 AGACTCTAACCAAAATCTTATTGCAG 57.726 34.615 0.00 0.00 0.00 4.41
3778 4046 9.905713 ATAGACTCTAACCAAAATCTTATTGCA 57.094 29.630 0.00 0.00 0.00 4.08
3791 4064 9.667107 CTTTATGGTTTTGATAGACTCTAACCA 57.333 33.333 11.25 11.25 45.16 3.67
3866 4139 6.590292 ACTTATCTTATCAACAGTCACCAACG 59.410 38.462 0.00 0.00 0.00 4.10
3893 4166 8.925700 GGACCACAAAATGAATCTTTACAAATC 58.074 33.333 0.00 0.00 0.00 2.17
4396 4669 6.017192 CCATAGCACCATGATAAATTGTTCGA 60.017 38.462 0.00 0.00 0.00 3.71
4465 4738 7.012327 TGTGCCAGCTCAACACTATTTAATATC 59.988 37.037 10.64 0.00 35.33 1.63
4710 4983 9.559732 CCAAAGGAATTCCAAAAGATTTACTTT 57.440 29.630 26.22 10.19 44.39 2.66
4734 5009 4.832266 ACAAGTATGTGCCTTTTTCATCCA 59.168 37.500 0.00 0.00 38.69 3.41
4764 5039 0.469705 AACAGATGGCCAAGGCACAA 60.470 50.000 10.96 0.00 41.84 3.33
4775 5050 5.359009 AGCATTTCATTACAGGAACAGATGG 59.641 40.000 0.00 0.00 0.00 3.51
4891 5195 5.846714 AGGGTAAGCAATCTACTGTATGGAT 59.153 40.000 0.00 0.00 0.00 3.41
5005 5309 7.745022 AAATATTGTGTTCAATGAGCAATCG 57.255 32.000 0.33 0.00 43.17 3.34
5145 5449 2.580322 TGAGATGGAGTCCTCTCTGTCT 59.420 50.000 25.95 14.52 38.94 3.41
5274 5578 9.003658 CCTAGTTTCAAACAAAGTGAGACATAT 57.996 33.333 2.41 0.00 33.64 1.78
5298 5602 1.229209 TGCTTCCTCCGACCTTCCT 60.229 57.895 0.00 0.00 0.00 3.36
5526 5830 1.360551 CGTATGCCAGAGTCCCTCG 59.639 63.158 0.00 0.00 35.36 4.63
5563 5867 3.304257 GCCATGATCATTAGGAAAGCACG 60.304 47.826 14.72 0.00 0.00 5.34
5644 5949 4.816385 CACACTAGAACAGAGGAGCAAAAA 59.184 41.667 0.00 0.00 0.00 1.94
5739 6052 8.004087 ACCCATATCAATGAGACAAATGAAAG 57.996 34.615 0.00 0.00 34.84 2.62
6105 6419 2.625737 TGCTAGAAATGCTCTGCTCAC 58.374 47.619 0.00 0.00 35.41 3.51
6188 6502 2.224378 TGAAGGAACCTCTCTGCACTTG 60.224 50.000 0.00 0.00 0.00 3.16
6335 6649 1.399440 CCACTGCATGAACCGATCTTG 59.601 52.381 0.00 0.00 36.53 3.02
6478 6792 1.401905 GAGGCCATCATTGTTTCCGAC 59.598 52.381 5.01 0.00 0.00 4.79
6498 6815 1.507096 GAGCTTGCGTGCGTTTACG 60.507 57.895 0.00 0.00 46.28 3.18
6507 6824 2.208431 GCTGAATCATAGAGCTTGCGT 58.792 47.619 0.00 0.00 0.00 5.24
6535 6852 7.420680 CCATAGTTCCCTTTCTTGTGGATAGAT 60.421 40.741 0.00 0.00 0.00 1.98
6616 6935 1.459592 CTGCAGGTAAACGAGGAAACG 59.540 52.381 5.57 0.00 39.31 3.60
6617 6936 1.804748 CCTGCAGGTAAACGAGGAAAC 59.195 52.381 25.53 0.00 0.00 2.78
6748 7077 1.277273 AGGTTGCTAACTACGGGGAAC 59.723 52.381 0.00 0.00 0.00 3.62
6844 7173 6.959639 AGAAGAGCCAAAACTTATGTCAAA 57.040 33.333 0.00 0.00 0.00 2.69
6893 7222 0.176449 CAGATCATCCCACGAGCACA 59.824 55.000 0.00 0.00 0.00 4.57
6894 7223 0.461548 TCAGATCATCCCACGAGCAC 59.538 55.000 0.00 0.00 0.00 4.40
6895 7224 0.749049 CTCAGATCATCCCACGAGCA 59.251 55.000 0.00 0.00 0.00 4.26
6896 7225 0.749649 ACTCAGATCATCCCACGAGC 59.250 55.000 0.00 0.00 0.00 5.03
6897 7226 4.098654 AGTTTACTCAGATCATCCCACGAG 59.901 45.833 0.00 0.00 0.00 4.18
6898 7227 4.023980 AGTTTACTCAGATCATCCCACGA 58.976 43.478 0.00 0.00 0.00 4.35
6899 7228 4.115516 CAGTTTACTCAGATCATCCCACG 58.884 47.826 0.00 0.00 0.00 4.94
6900 7229 4.162320 TCCAGTTTACTCAGATCATCCCAC 59.838 45.833 0.00 0.00 0.00 4.61
6908 7245 6.820656 CACAAGCTATTCCAGTTTACTCAGAT 59.179 38.462 0.00 0.00 0.00 2.90
6936 7273 1.063031 GCGCAAATGAAAGCCTTCAC 58.937 50.000 0.30 0.00 44.28 3.18
6937 7274 0.387112 CGCGCAAATGAAAGCCTTCA 60.387 50.000 8.75 0.00 45.53 3.02
6940 7353 1.378531 TATCGCGCAAATGAAAGCCT 58.621 45.000 8.75 0.00 0.00 4.58
6946 7359 0.746204 TGCCCTTATCGCGCAAATGA 60.746 50.000 8.75 0.00 0.00 2.57
7100 7638 0.817634 CCTCACCGAGATCGAGAGCT 60.818 60.000 14.95 0.00 43.02 4.09
7106 7644 0.387202 ATGCTTCCTCACCGAGATCG 59.613 55.000 0.00 0.00 39.44 3.69
7108 7646 4.097135 CGATATATGCTTCCTCACCGAGAT 59.903 45.833 0.00 0.00 0.00 2.75
7119 7657 8.261908 GCAATTTGTTTGTTCGATATATGCTTC 58.738 33.333 0.00 0.00 37.65 3.86
7148 7687 3.305629 GCACGAAAAATGCACACAAGAAA 59.694 39.130 0.00 0.00 42.88 2.52
7166 7705 7.525688 TCTTTCAGAGTAAAATATGAGCACG 57.474 36.000 0.00 0.00 0.00 5.34
7199 7738 6.460399 ATACTAACAGTACTAGCTGCTTCAGC 60.460 42.308 7.79 10.57 44.38 4.26
7233 7776 1.275291 GAACCATCCCTGTCTGACGAA 59.725 52.381 2.98 0.00 0.00 3.85
7257 7800 7.962964 AGAATTGAATACGAACAGAACAGAA 57.037 32.000 0.00 0.00 0.00 3.02
7286 7829 1.303309 GGCGTACTAGCTCGTAGGAA 58.697 55.000 18.98 0.00 37.29 3.36
7287 7830 0.178767 TGGCGTACTAGCTCGTAGGA 59.821 55.000 18.98 0.00 37.29 2.94
7300 7843 0.246910 TGCGGAGTATTTGTGGCGTA 59.753 50.000 0.00 0.00 0.00 4.42
7303 7846 2.939460 AATTGCGGAGTATTTGTGGC 57.061 45.000 0.00 0.00 0.00 5.01
7310 7853 2.222027 GCAGGCTTAATTGCGGAGTAT 58.778 47.619 0.00 0.00 0.00 2.12
7343 9720 3.181476 GCCATTGTTATGATGGGTTGGAC 60.181 47.826 5.38 0.00 43.45 4.02
7356 9733 3.244735 TGCAGTGGAAGTAGCCATTGTTA 60.245 43.478 0.00 0.00 44.73 2.41
7570 9986 1.583967 GAGGTCGTCGATCACTGCG 60.584 63.158 8.47 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.