AutoCloner

Multiple sequence alignment - TraesCS2D01G263600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G263600	chr2D	100.000	2802	0	0	1	2802	322501133	322503934	0.000000e+00	5175
1	TraesCS2D01G263600	chr2D	93.295	701	44	2	2	701	549981565	549982263	0.000000e+00	1031
2	TraesCS2D01G263600	chr2B	95.922	1226	19	5	828	2026	390606964	390608185	0.000000e+00	1958
3	TraesCS2D01G263600	chr2B	94.224	831	45	2	2	831	390606024	390606852	0.000000e+00	1266
4	TraesCS2D01G263600	chr2B	81.505	638	79	20	2169	2802	390608610	390609212	3.240000e-134	488
5	TraesCS2D01G263600	chr2B	80.713	477	78	8	2333	2802	669448993	669449462	2.650000e-95	359
6	TraesCS2D01G263600	chr2B	87.681	138	10	4	2024	2161	390608509	390608639	1.340000e-33	154
7	TraesCS2D01G263600	chr2A	96.667	1050	28	2	934	1977	408774020	408772972	0.000000e+00	1738
8	TraesCS2D01G263600	chr2A	84.201	538	75	4	2275	2802	408769654	408769117	5.350000e-142	514
9	TraesCS2D01G263600	chr2A	95.775	71	3	0	2020	2090	408769835	408769765	6.340000e-22	115
10	TraesCS2D01G263600	chr2A	100.000	58	0	0	1972	2029	408770314	408770257	1.060000e-19	108
11	TraesCS2D01G263600	chr7D	93.750	704	40	4	2	702	397377407	397378109	0.000000e+00	1053
12	TraesCS2D01G263600	chr7D	93.571	700	40	4	2	699	182611011	182610315	0.000000e+00	1038
13	TraesCS2D01G263600	chr7D	77.280	647	129	12	2169	2802	212215717	212215076	5.700000e-97	364
14	TraesCS2D01G263600	chr5D	93.324	704	43	4	2	702	525594598	525595300	0.000000e+00	1037
15	TraesCS2D01G263600	chr5D	93.133	699	46	2	3	699	486002204	486002902	0.000000e+00	1024
16	TraesCS2D01G263600	chr5D	83.072	638	86	12	2171	2802	294627377	294626756	6.780000e-156	560
17	TraesCS2D01G263600	chr5D	82.199	573	94	7	2237	2802	276704432	276703861	1.170000e-133	486
18	TraesCS2D01G263600	chr6D	93.466	704	32	11	6	701	130198425	130197728	0.000000e+00	1033
19	TraesCS2D01G263600	chr6D	78.505	642	116	16	2168	2800	449158455	449159083	4.350000e-108	401
20	TraesCS2D01G263600	chr1D	93.276	699	45	2	2	698	236079699	236080397	0.000000e+00	1029
21	TraesCS2D01G263600	chr1D	82.863	461	73	4	2345	2801	479909157	479908699	2.600000e-110	409
22	TraesCS2D01G263600	chr1B	93.153	701	45	3	2	699	615025242	615024542	0.000000e+00	1026
23	TraesCS2D01G263600	chr3D	79.658	644	115	11	2171	2802	313937606	313936967	1.530000e-122	449
24	TraesCS2D01G263600	chr3B	79.255	564	110	5	2245	2802	652371562	652372124	1.220000e-103	387
25	TraesCS2D01G263600	chr7B	75.177	282	60	9	1235	1511	14909972	14910248	1.050000e-24	124
26	TraesCS2D01G263600	chr4D	81.879	149	23	4	2171	2317	476336782	476336928	3.790000e-24	122

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G263600	chr2D	322501133	322503934	2801	False	5175.00	5175	100.00000	1	2802	1	chr2D.!!$F1	2801
1	TraesCS2D01G263600	chr2D	549981565	549982263	698	False	1031.00	1031	93.29500	2	701	1	chr2D.!!$F2	699
2	TraesCS2D01G263600	chr2B	390606024	390609212	3188	False	966.50	1958	89.83300	2	2802	4	chr2B.!!$F2	2800
3	TraesCS2D01G263600	chr2A	408769117	408774020	4903	True	618.75	1738	94.16075	934	2802	4	chr2A.!!$R1	1868
4	TraesCS2D01G263600	chr7D	397377407	397378109	702	False	1053.00	1053	93.75000	2	702	1	chr7D.!!$F1	700
5	TraesCS2D01G263600	chr7D	182610315	182611011	696	True	1038.00	1038	93.57100	2	699	1	chr7D.!!$R1	697
6	TraesCS2D01G263600	chr7D	212215076	212215717	641	True	364.00	364	77.28000	2169	2802	1	chr7D.!!$R2	633
7	TraesCS2D01G263600	chr5D	525594598	525595300	702	False	1037.00	1037	93.32400	2	702	1	chr5D.!!$F2	700
8	TraesCS2D01G263600	chr5D	486002204	486002902	698	False	1024.00	1024	93.13300	3	699	1	chr5D.!!$F1	696
9	TraesCS2D01G263600	chr5D	294626756	294627377	621	True	560.00	560	83.07200	2171	2802	1	chr5D.!!$R2	631
10	TraesCS2D01G263600	chr5D	276703861	276704432	571	True	486.00	486	82.19900	2237	2802	1	chr5D.!!$R1	565
11	TraesCS2D01G263600	chr6D	130197728	130198425	697	True	1033.00	1033	93.46600	6	701	1	chr6D.!!$R1	695
12	TraesCS2D01G263600	chr6D	449158455	449159083	628	False	401.00	401	78.50500	2168	2800	1	chr6D.!!$F1	632
13	TraesCS2D01G263600	chr1D	236079699	236080397	698	False	1029.00	1029	93.27600	2	698	1	chr1D.!!$F1	696
14	TraesCS2D01G263600	chr1B	615024542	615025242	700	True	1026.00	1026	93.15300	2	699	1	chr1B.!!$R1	697
15	TraesCS2D01G263600	chr3D	313936967	313937606	639	True	449.00	449	79.65800	2171	2802	1	chr3D.!!$R1	631
16	TraesCS2D01G263600	chr3B	652371562	652372124	562	False	387.00	387	79.25500	2245	2802	1	chr3B.!!$F1	557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
42	43	0.240945	CGGAGCAAATGGACGCTTTT	59.759	50.0	0.0	0.0	38.99	2.27	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1807	1953	1.13467	ACTCCTCACGCCTAATCAAGC	60.135	52.381	0.0	0.0	0.0	4.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	0.240945	CGGAGCAAATGGACGCTTTT	59.759	50.000	0.00	0.00	38.99	2.27
225	226	5.908562	AGATCATGAAGGTGGATCTCAAT	57.091	39.130	0.00	0.00	43.06	2.57
290	291	0.716108	GACATGCTCAAGTTCGACGG	59.284	55.000	0.00	0.00	0.00	4.79
421	424	2.359107	CTGACATGTGTGCCGGCT	60.359	61.111	29.70	4.49	0.00	5.52
584	594	4.690719	AATGGGTCGGCGCGTTGA	62.691	61.111	11.06	2.59	35.77	3.18
611	621	2.423538	CTGCCGACCCAAATCTAAAAGG	59.576	50.000	0.00	0.00	0.00	3.11
622	634	2.358984	TAAAAGGGTGCGGACGCC	60.359	61.111	20.28	12.98	46.44	5.68
680	692	4.973055	CGCCGTCCGTTTGGGTCA	62.973	66.667	0.00	0.00	37.00	4.02
724	737	8.428186	AACGACTTTGTTAGAGTGTCAATTTA	57.572	30.769	0.00	0.00	0.00	1.40
756	769	9.932207	AAATCACCATATTATCGGTTATTACGA	57.068	29.630	0.00	0.00	45.19	3.43
820	833	5.749109	GCTAGCTCAACGACATTGTTACTAT	59.251	40.000	7.70	0.00	39.54	2.12
822	835	7.096558	GCTAGCTCAACGACATTGTTACTATAC	60.097	40.741	7.70	0.00	39.54	1.47
823	836	6.627243	AGCTCAACGACATTGTTACTATACA	58.373	36.000	0.00	0.00	39.54	2.29
824	837	7.265673	AGCTCAACGACATTGTTACTATACAT	58.734	34.615	0.00	0.00	39.54	2.29
825	838	7.222805	AGCTCAACGACATTGTTACTATACATG	59.777	37.037	0.00	0.00	39.54	3.21
826	839	7.516785	GCTCAACGACATTGTTACTATACATGG	60.517	40.741	0.00	0.00	39.54	3.66
1789	1935	1.846124	GAGTGGGAGTGGGGTCCAA	60.846	63.158	0.00	0.00	38.52	3.53
1807	1953	4.809426	GTCCAACCATACAACGGAATAGAG	59.191	45.833	0.00	0.00	0.00	2.43
1886	2039	1.599542	GTGCTTTCTTGTCGCTGTTCT	59.400	47.619	0.00	0.00	0.00	3.01
1888	2041	1.867233	GCTTTCTTGTCGCTGTTCTGA	59.133	47.619	0.00	0.00	0.00	3.27
1903	2056	4.222336	TGTTCTGATTGGGTTTGGTGATT	58.778	39.130	0.00	0.00	0.00	2.57
1938	2091	2.520465	ATCTCCCATGCGTGCGTGAA	62.520	55.000	15.36	2.76	35.09	3.18
1948	2101	1.275471	CGTGCGTGAACGTGAGACAT	61.275	55.000	4.59	0.00	42.22	3.06
1958	2111	5.465724	GTGAACGTGAGACATTTACTTTCCT	59.534	40.000	0.00	0.00	0.00	3.36
2062	5478	4.934001	GCATCAATAGCTAGCTTGAGCATA	59.066	41.667	24.88	2.48	45.43	3.14
2096	5512	1.005450	GGCCCACCTAAAGGAATGACA	59.995	52.381	2.23	0.00	38.94	3.58
2106	5522	0.952497	AGGAATGACAGTGCAGTGCG	60.952	55.000	21.57	0.00	29.37	5.34
2125	5541	0.451783	GCATAAGGGCAACTCCAACG	59.548	55.000	0.00	0.00	36.21	4.10
2132	5548	2.617274	GCAACTCCAACGCCCAGAC	61.617	63.158	0.00	0.00	0.00	3.51
2134	5550	3.192103	AACTCCAACGCCCAGACCC	62.192	63.158	0.00	0.00	0.00	4.46
2135	5551	3.322466	CTCCAACGCCCAGACCCT	61.322	66.667	0.00	0.00	0.00	4.34
2136	5552	1.987855	CTCCAACGCCCAGACCCTA	60.988	63.158	0.00	0.00	0.00	3.53
2137	5553	1.536907	TCCAACGCCCAGACCCTAA	60.537	57.895	0.00	0.00	0.00	2.69
2138	5554	1.128809	TCCAACGCCCAGACCCTAAA	61.129	55.000	0.00	0.00	0.00	1.85
2139	5555	0.034477	CCAACGCCCAGACCCTAAAT	60.034	55.000	0.00	0.00	0.00	1.40
2140	5556	1.094785	CAACGCCCAGACCCTAAATG	58.905	55.000	0.00	0.00	0.00	2.32
2141	5557	0.034477	AACGCCCAGACCCTAAATGG	60.034	55.000	0.00	0.00	0.00	3.16
2142	5558	1.205460	ACGCCCAGACCCTAAATGGT	61.205	55.000	0.00	0.00	42.79	3.55
2148	5564	3.004090	ACCCTAAATGGTCCGGCC	58.996	61.111	0.00	1.41	31.15	6.13
2149	5565	2.194868	CCCTAAATGGTCCGGCCC	59.805	66.667	11.72	3.08	36.04	5.80
2150	5566	2.194868	CCTAAATGGTCCGGCCCC	59.805	66.667	0.00	0.12	36.04	5.80
2151	5567	2.203153	CTAAATGGTCCGGCCCCG	60.203	66.667	0.00	0.00	36.04	5.73
2152	5568	3.010314	TAAATGGTCCGGCCCCGT	61.010	61.111	0.00	0.00	37.81	5.28
2153	5569	2.935627	CTAAATGGTCCGGCCCCGTC	62.936	65.000	0.00	0.00	37.81	4.79
2158	5574	4.324991	GTCCGGCCCCGTCTGTTT	62.325	66.667	5.93	0.00	37.81	2.83
2159	5575	4.323477	TCCGGCCCCGTCTGTTTG	62.323	66.667	5.93	0.00	37.81	2.93
2161	5577	4.323477	CGGCCCCGTCTGTTTGGA	62.323	66.667	0.00	0.00	34.35	3.53
2162	5578	2.359975	GGCCCCGTCTGTTTGGAG	60.360	66.667	0.00	0.00	0.00	3.86
2163	5579	2.430367	GCCCCGTCTGTTTGGAGT	59.570	61.111	0.00	0.00	0.00	3.85
2164	5580	1.675219	GCCCCGTCTGTTTGGAGTA	59.325	57.895	0.00	0.00	0.00	2.59
2165	5581	0.035739	GCCCCGTCTGTTTGGAGTAA	59.964	55.000	0.00	0.00	0.00	2.24
2166	5582	1.543871	GCCCCGTCTGTTTGGAGTAAA	60.544	52.381	0.00	0.00	0.00	2.01
2167	5583	2.878526	GCCCCGTCTGTTTGGAGTAAAT	60.879	50.000	0.00	0.00	0.00	1.40
2168	5584	2.747446	CCCCGTCTGTTTGGAGTAAATG	59.253	50.000	0.00	0.00	0.00	2.32
2169	5585	3.558321	CCCCGTCTGTTTGGAGTAAATGA	60.558	47.826	0.00	0.00	0.00	2.57
2170	5586	3.435671	CCCGTCTGTTTGGAGTAAATGAC	59.564	47.826	0.00	0.00	34.34	3.06
2171	5587	3.435671	CCGTCTGTTTGGAGTAAATGACC	59.564	47.826	0.00	0.00	34.26	4.02
2172	5588	3.435671	CGTCTGTTTGGAGTAAATGACCC	59.564	47.826	0.00	0.00	34.26	4.46
2175	5591	5.300792	GTCTGTTTGGAGTAAATGACCCAAA	59.699	40.000	0.00	0.00	41.87	3.28
2194	5610	4.424566	GTCCGGCCGCGTCTGTTA	62.425	66.667	22.85	0.00	0.00	2.41
2195	5612	3.454573	TCCGGCCGCGTCTGTTAT	61.455	61.111	22.85	0.00	0.00	1.89
2199	5616	2.185867	GCCGCGTCTGTTATGGGA	59.814	61.111	4.92	0.00	0.00	4.37
2219	5636	0.675083	TAAACGGACAGAACAGGCGA	59.325	50.000	0.00	0.00	0.00	5.54
2241	5658	1.814586	AACGCGTGGGAACAAACGA	60.815	52.632	14.98	0.00	46.06	3.85
2357	5774	1.847968	CACCCTTGTCCTCCCCTGT	60.848	63.158	0.00	0.00	0.00	4.00
2358	5783	0.546747	CACCCTTGTCCTCCCCTGTA	60.547	60.000	0.00	0.00	0.00	2.74
2413	5840	0.114364	ATTTCGCCCAAAACCCTCCT	59.886	50.000	0.00	0.00	0.00	3.69
2415	5842	2.002018	TTCGCCCAAAACCCTCCTGT	62.002	55.000	0.00	0.00	0.00	4.00
2426	5855	1.614824	CCTCCTGTGCCCTTCCTCT	60.615	63.158	0.00	0.00	0.00	3.69
2447	5883	4.731853	TCCTCCACCATGGCCGGA	62.732	66.667	19.77	19.77	37.47	5.14
2579	6018	0.991920	AATCGGCCAAGAGGAGGAAA	59.008	50.000	2.24	0.00	36.89	3.13
2608	6048	1.842381	AAGGTGGCGGAGAAGAAGGG	61.842	60.000	0.00	0.00	0.00	3.95
2610	6050	3.717294	TGGCGGAGAAGAAGGGCC	61.717	66.667	0.00	0.00	44.00	5.80
2647	6099	2.669569	GGCGTCCACACTGCATGT	60.670	61.111	0.00	0.00	44.81	3.21
2650	6102	1.664649	CGTCCACACTGCATGTCGT	60.665	57.895	0.00	0.00	40.64	4.34
2695	6159	1.779061	AAGGAGTCCCACGTTGCCAT	61.779	55.000	5.25	0.00	33.88	4.40
2751	6215	3.074369	TGCCGGCCATTCTCTCGA	61.074	61.111	26.77	0.00	0.00	4.04

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	3.591789	CCTCCTCCTTTGGATCTCCATA	58.408	50.000	0.00	0.00	46.97	2.74
290	291	2.024319	GCCGCCATAGATCACTCGC	61.024	63.158	0.00	0.00	0.00	5.03
437	440	7.066163	CAGAAAATATCACCACAGTTCATGCTA	59.934	37.037	0.00	0.00	0.00	3.49
584	594	0.899717	ATTTGGGTCGGCAGTGCATT	60.900	50.000	18.61	0.00	0.00	3.56
632	644	1.747709	TTTTTGTCCGTTTGGGTCGA	58.252	45.000	0.00	0.00	37.00	4.20
680	692	0.685097	TAGAGCAACTTCAACGGGCT	59.315	50.000	0.00	0.00	37.56	5.19
724	737	6.552008	ACCGATAATATGGTGATTTTGGGAT	58.448	36.000	0.00	0.00	37.02	3.85
756	769	2.323999	TTGTCAAATGGCCCAATCCT	57.676	45.000	0.00	0.00	0.00	3.24
954	1082	0.671781	CAGACACGCAGAGAAAGGGG	60.672	60.000	0.00	0.00	0.00	4.79
1789	1935	4.161565	TCAAGCTCTATTCCGTTGTATGGT	59.838	41.667	0.00	0.00	0.00	3.55
1807	1953	1.134670	ACTCCTCACGCCTAATCAAGC	60.135	52.381	0.00	0.00	0.00	4.01
1886	2039	2.702478	TGCAAATCACCAAACCCAATCA	59.298	40.909	0.00	0.00	0.00	2.57
1888	2041	2.437281	TGTGCAAATCACCAAACCCAAT	59.563	40.909	0.00	0.00	45.03	3.16
1903	2056	3.599343	GGAGATGTGTAGTCATGTGCAA	58.401	45.455	0.00	0.00	31.78	4.08
1938	2091	3.746492	GCAGGAAAGTAAATGTCTCACGT	59.254	43.478	0.00	0.00	0.00	4.49
1948	2101	6.614694	TGGATGTAGTAGCAGGAAAGTAAA	57.385	37.500	0.00	0.00	0.00	2.01
1958	2111	9.502091	GGTAATAATCAAATGGATGTAGTAGCA	57.498	33.333	0.00	0.00	36.02	3.49
2062	5478	1.970640	GTGGGCCAAAAGAAGGACAAT	59.029	47.619	8.40	0.00	35.15	2.71
2106	5522	0.451783	CGTTGGAGTTGCCCTTATGC	59.548	55.000	0.00	0.00	34.97	3.14
2132	5548	2.194868	GGGCCGGACCATTTAGGG	59.805	66.667	25.88	0.00	43.89	3.53
2134	5550	2.203153	CGGGGCCGGACCATTTAG	60.203	66.667	32.17	9.86	42.05	1.85
2135	5551	3.010314	ACGGGGCCGGACCATTTA	61.010	61.111	32.17	0.00	44.69	1.40
2136	5552	4.419921	GACGGGGCCGGACCATTT	62.420	66.667	32.17	11.85	44.69	2.32
2141	5557	4.324991	AAACAGACGGGGCCGGAC	62.325	66.667	18.95	0.00	44.69	4.79
2142	5558	4.323477	CAAACAGACGGGGCCGGA	62.323	66.667	18.95	0.00	44.69	5.14
2144	5560	4.323477	TCCAAACAGACGGGGCCG	62.323	66.667	0.00	0.00	46.03	6.13
2145	5561	1.833787	TACTCCAAACAGACGGGGCC	61.834	60.000	0.00	0.00	0.00	5.80
2146	5562	0.035739	TTACTCCAAACAGACGGGGC	59.964	55.000	0.00	0.00	0.00	5.80
2147	5563	2.554370	TTTACTCCAAACAGACGGGG	57.446	50.000	0.00	0.00	0.00	5.73
2148	5564	3.435671	GTCATTTACTCCAAACAGACGGG	59.564	47.826	0.00	0.00	29.87	5.28
2149	5565	3.435671	GGTCATTTACTCCAAACAGACGG	59.564	47.826	0.00	0.00	36.26	4.79
2150	5566	3.435671	GGGTCATTTACTCCAAACAGACG	59.564	47.826	0.00	0.00	36.26	4.18
2151	5567	4.394729	TGGGTCATTTACTCCAAACAGAC	58.605	43.478	0.00	0.00	35.38	3.51
2152	5568	4.715534	TGGGTCATTTACTCCAAACAGA	57.284	40.909	0.00	0.00	0.00	3.41
2153	5569	5.278957	CCTTTGGGTCATTTACTCCAAACAG	60.279	44.000	0.00	0.00	40.50	3.16
2154	5570	4.586841	CCTTTGGGTCATTTACTCCAAACA	59.413	41.667	0.00	0.00	40.50	2.83
2155	5571	4.587262	ACCTTTGGGTCATTTACTCCAAAC	59.413	41.667	0.00	0.00	43.38	2.93
2156	5572	4.810345	ACCTTTGGGTCATTTACTCCAAA	58.190	39.130	0.00	0.00	43.38	3.28
2157	5573	4.463050	ACCTTTGGGTCATTTACTCCAA	57.537	40.909	0.00	0.00	43.38	3.53
2194	5610	3.370527	CCTGTTCTGTCCGTTTATCCCAT	60.371	47.826	0.00	0.00	0.00	4.00
2195	5612	2.027561	CCTGTTCTGTCCGTTTATCCCA	60.028	50.000	0.00	0.00	0.00	4.37
2199	5616	1.274167	TCGCCTGTTCTGTCCGTTTAT	59.726	47.619	0.00	0.00	0.00	1.40
2241	5658	2.033675	GGACCAAAAACGGACGTTGATT	59.966	45.455	11.12	6.92	38.47	2.57
2413	5840	1.201429	GGAAGGAGAGGAAGGGCACA	61.201	60.000	0.00	0.00	0.00	4.57
2415	5842	0.618968	GAGGAAGGAGAGGAAGGGCA	60.619	60.000	0.00	0.00	0.00	5.36
2426	5855	2.308722	GGCCATGGTGGAGGAAGGA	61.309	63.158	14.67	0.00	40.96	3.36
2447	5883	3.528370	CCGGGATTCGTCGAGCCT	61.528	66.667	13.73	0.00	37.11	4.58
2488	5924	3.445687	TAGCCTTCTTCGCCGCGA	61.446	61.111	12.39	12.39	0.00	5.87
2579	6018	1.594293	CGCCACCTTTGTCTGTCGT	60.594	57.895	0.00	0.00	0.00	4.34
2627	6067	2.882677	ATGCAGTGTGGACGCCTCA	61.883	57.895	0.00	0.00	0.00	3.86
2634	6074	4.359475	CACGACATGCAGTGTGGA	57.641	55.556	14.69	0.00	42.36	4.02
2647	6099	4.063967	CGGCCTGGTGCTACACGA	62.064	66.667	0.00	0.00	40.92	4.35
2650	6102	4.063967	CGTCGGCCTGGTGCTACA	62.064	66.667	0.00	0.00	40.92	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.