Multiple sequence alignment - TraesCS2D01G263400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G263400 chr2D 100.000 4362 0 0 1 4362 321915809 321911448 0.000000e+00 8056.0
1 TraesCS2D01G263400 chr2D 85.221 521 69 4 1 519 605933140 605932626 2.990000e-146 529.0
2 TraesCS2D01G263400 chr2D 84.079 559 75 10 1 555 605919445 605918897 1.070000e-145 527.0
3 TraesCS2D01G263400 chr2D 87.629 194 22 2 1 194 302254902 302254711 1.580000e-54 224.0
4 TraesCS2D01G263400 chr2B 95.007 2944 93 24 602 3525 390118611 390115702 0.000000e+00 4573.0
5 TraesCS2D01G263400 chr2B 90.700 1000 72 13 622 1618 390144733 390143752 0.000000e+00 1312.0
6 TraesCS2D01G263400 chr2B 93.552 853 36 8 3526 4362 390115647 390114798 0.000000e+00 1253.0
7 TraesCS2D01G263400 chr2B 92.308 208 15 1 6 212 390142598 390142391 1.190000e-75 294.0
8 TraesCS2D01G263400 chr2B 90.511 137 12 1 208 344 390140664 390140529 3.470000e-41 180.0
9 TraesCS2D01G263400 chr2B 91.837 98 7 1 340 437 390126262 390126166 7.610000e-28 135.0
10 TraesCS2D01G263400 chr2B 95.556 45 2 0 1631 1675 390143757 390143713 6.050000e-09 73.1
11 TraesCS2D01G263400 chr2A 96.457 2766 68 13 770 3525 409639389 409642134 0.000000e+00 4538.0
12 TraesCS2D01G263400 chr2A 90.349 860 36 12 3526 4362 409642189 409643024 0.000000e+00 1085.0
13 TraesCS2D01G263400 chr4B 81.364 601 83 14 1 593 80582702 80583281 3.070000e-126 462.0
14 TraesCS2D01G263400 chr4B 81.063 602 83 15 1 593 80553999 80554578 6.650000e-123 451.0
15 TraesCS2D01G263400 chr7A 78.723 564 93 18 38 594 536005563 536005020 6.940000e-93 351.0
16 TraesCS2D01G263400 chr7A 81.622 185 24 10 4183 4362 90665019 90664840 1.260000e-30 145.0
17 TraesCS2D01G263400 chr7A 78.818 203 26 10 4177 4362 90614327 90614529 2.130000e-23 121.0
18 TraesCS2D01G263400 chr7A 78.866 194 24 10 4177 4353 90615217 90615410 9.910000e-22 115.0
19 TraesCS2D01G263400 chr7A 97.059 34 0 1 640 673 647918557 647918525 6.090000e-04 56.5
20 TraesCS2D01G263400 chr5A 82.836 268 36 6 34 299 404702109 404702368 9.430000e-57 231.0
21 TraesCS2D01G263400 chr5A 84.925 199 29 1 1 199 650094936 650094739 2.660000e-47 200.0
22 TraesCS2D01G263400 chr5B 81.323 257 38 8 45 299 382387663 382387415 2.660000e-47 200.0
23 TraesCS2D01G263400 chr7D 77.481 262 32 16 4125 4362 89791481 89791223 9.840000e-27 132.0
24 TraesCS2D01G263400 chr7D 89.362 94 8 2 4270 4362 89522398 89522490 2.760000e-22 117.0
25 TraesCS2D01G263400 chr1D 86.607 112 14 1 143 254 184469671 184469781 5.920000e-24 122.0
26 TraesCS2D01G263400 chr1A 100.000 28 0 0 637 664 576276213 576276186 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G263400 chr2D 321911448 321915809 4361 True 8056.000 8056 100.00000 1 4362 1 chr2D.!!$R2 4361
1 TraesCS2D01G263400 chr2D 605932626 605933140 514 True 529.000 529 85.22100 1 519 1 chr2D.!!$R4 518
2 TraesCS2D01G263400 chr2D 605918897 605919445 548 True 527.000 527 84.07900 1 555 1 chr2D.!!$R3 554
3 TraesCS2D01G263400 chr2B 390114798 390118611 3813 True 2913.000 4573 94.27950 602 4362 2 chr2B.!!$R2 3760
4 TraesCS2D01G263400 chr2B 390140529 390144733 4204 True 464.775 1312 92.26875 6 1675 4 chr2B.!!$R3 1669
5 TraesCS2D01G263400 chr2A 409639389 409643024 3635 False 2811.500 4538 93.40300 770 4362 2 chr2A.!!$F1 3592
6 TraesCS2D01G263400 chr4B 80582702 80583281 579 False 462.000 462 81.36400 1 593 1 chr4B.!!$F2 592
7 TraesCS2D01G263400 chr4B 80553999 80554578 579 False 451.000 451 81.06300 1 593 1 chr4B.!!$F1 592
8 TraesCS2D01G263400 chr7A 536005020 536005563 543 True 351.000 351 78.72300 38 594 1 chr7A.!!$R2 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 516 0.035439 ACCCTCAAATAGTGCGGTGG 60.035 55.000 0.00 0.00 29.18 4.61 F
516 517 0.035439 CCCTCAAATAGTGCGGTGGT 60.035 55.000 0.00 0.00 29.18 4.16 F
605 606 0.109086 AGATGACGTCAACTGCGGAG 60.109 55.000 25.42 0.85 0.00 4.63 F
606 607 1.078759 GATGACGTCAACTGCGGAGG 61.079 60.000 24.13 0.00 0.00 4.30 F
608 609 1.174078 TGACGTCAACTGCGGAGGTA 61.174 55.000 17.62 0.00 33.90 3.08 F
636 637 1.221021 CCTTACCGCCAACCTCCTC 59.779 63.158 0.00 0.00 0.00 3.71 F
1888 1908 1.224039 GGAGCAGGAGCAAGAGCAT 59.776 57.895 0.00 0.00 45.49 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1341 0.394762 AATCAGGCATGGCATCGTGT 60.395 50.000 22.64 0.00 32.65 4.49 R
2329 2361 1.145738 AGTGGCCAACTCCAAGATTGT 59.854 47.619 7.24 0.00 37.96 2.71 R
2441 2473 1.407437 CCACAAGTATCACCAGCCTCC 60.407 57.143 0.00 0.00 0.00 4.30 R
2572 2604 4.497006 GCTTTATACTACCAGAACTCGCGA 60.497 45.833 9.26 9.26 0.00 5.87 R
2626 2658 0.111061 TCTGGGTCTTGCTTGCACAT 59.889 50.000 0.00 0.00 0.00 3.21 R
2719 2751 1.202394 CGACAGAGGCAGGATTCTCAG 60.202 57.143 0.00 0.00 32.76 3.35 R
3793 6744 0.533755 ATTCTACAGCCGCATCTGCC 60.534 55.000 2.44 0.00 37.59 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.728839 GTCTTGAGCTGTGAACGAGAAG 59.271 50.000 0.00 0.00 0.00 2.85
84 85 1.795286 GAGCTGTGAACGAGAAGTTGG 59.205 52.381 0.00 0.00 44.35 3.77
90 91 3.118702 TGTGAACGAGAAGTTGGTGGTTA 60.119 43.478 0.00 0.00 44.35 2.85
95 96 2.806244 CGAGAAGTTGGTGGTTAGGTTG 59.194 50.000 0.00 0.00 0.00 3.77
113 114 5.159209 AGGTTGAACTACTTGTTATCGTCG 58.841 41.667 0.00 0.00 39.30 5.12
134 135 6.074302 CGTCGATTTGCTACACTATTTGCTAT 60.074 38.462 0.00 0.00 0.00 2.97
175 176 8.777413 CCTATTTGATATGTTCGATGTGTTGAT 58.223 33.333 0.00 0.00 0.00 2.57
190 191 9.891535 CGATGTGTTGATATATCATTTATGTCG 57.108 33.333 16.06 15.88 36.56 4.35
204 205 1.601166 ATGTCGATGTGGGATGCATG 58.399 50.000 2.46 0.00 0.00 4.06
212 213 5.412286 TCGATGTGGGATGCATGTTATAATG 59.588 40.000 2.46 0.00 0.00 1.90
225 226 7.716123 TGCATGTTATAATGTGTGAGATCATCA 59.284 33.333 0.00 0.00 34.79 3.07
260 261 4.700268 CAAACTATATTGCTGGTGTGCA 57.300 40.909 0.00 0.00 41.65 4.57
261 262 4.665212 CAAACTATATTGCTGGTGTGCAG 58.335 43.478 0.00 0.00 44.27 4.41
262 263 3.634397 ACTATATTGCTGGTGTGCAGT 57.366 42.857 0.00 0.00 44.27 4.40
263 264 3.955471 ACTATATTGCTGGTGTGCAGTT 58.045 40.909 0.00 0.00 44.27 3.16
264 265 4.335416 ACTATATTGCTGGTGTGCAGTTT 58.665 39.130 0.00 0.00 44.27 2.66
265 266 4.766891 ACTATATTGCTGGTGTGCAGTTTT 59.233 37.500 0.00 0.00 44.27 2.43
266 267 2.985957 ATTGCTGGTGTGCAGTTTTT 57.014 40.000 0.00 0.00 44.27 1.94
301 302 6.735678 AATGAACAAGTTTTTCACAAACCC 57.264 33.333 6.60 0.00 35.82 4.11
302 303 5.476091 TGAACAAGTTTTTCACAAACCCT 57.524 34.783 0.22 0.00 0.00 4.34
303 304 6.591750 TGAACAAGTTTTTCACAAACCCTA 57.408 33.333 0.22 0.00 0.00 3.53
304 305 6.994221 TGAACAAGTTTTTCACAAACCCTAA 58.006 32.000 0.22 0.00 0.00 2.69
305 306 7.093992 TGAACAAGTTTTTCACAAACCCTAAG 58.906 34.615 0.22 0.00 0.00 2.18
306 307 5.416083 ACAAGTTTTTCACAAACCCTAAGC 58.584 37.500 0.00 0.00 0.00 3.09
307 308 5.186992 ACAAGTTTTTCACAAACCCTAAGCT 59.813 36.000 0.00 0.00 0.00 3.74
308 309 6.378848 ACAAGTTTTTCACAAACCCTAAGCTA 59.621 34.615 0.00 0.00 0.00 3.32
309 310 6.635030 AGTTTTTCACAAACCCTAAGCTAG 57.365 37.500 0.00 0.00 0.00 3.42
310 311 6.362248 AGTTTTTCACAAACCCTAAGCTAGA 58.638 36.000 0.00 0.00 0.00 2.43
311 312 6.262496 AGTTTTTCACAAACCCTAAGCTAGAC 59.738 38.462 0.00 0.00 0.00 2.59
312 313 4.967084 TTCACAAACCCTAAGCTAGACA 57.033 40.909 0.00 0.00 0.00 3.41
313 314 4.537135 TCACAAACCCTAAGCTAGACAG 57.463 45.455 0.00 0.00 0.00 3.51
314 315 3.260884 TCACAAACCCTAAGCTAGACAGG 59.739 47.826 0.00 0.00 0.00 4.00
315 316 3.260884 CACAAACCCTAAGCTAGACAGGA 59.739 47.826 0.00 0.00 0.00 3.86
316 317 3.261137 ACAAACCCTAAGCTAGACAGGAC 59.739 47.826 0.00 0.00 0.00 3.85
317 318 2.162264 ACCCTAAGCTAGACAGGACC 57.838 55.000 0.00 0.00 0.00 4.46
318 319 1.343176 ACCCTAAGCTAGACAGGACCC 60.343 57.143 0.00 0.00 0.00 4.46
319 320 1.062810 CCCTAAGCTAGACAGGACCCT 60.063 57.143 0.00 0.00 0.00 4.34
320 321 2.177233 CCCTAAGCTAGACAGGACCCTA 59.823 54.545 0.00 0.00 0.00 3.53
321 322 3.224269 CCTAAGCTAGACAGGACCCTAC 58.776 54.545 0.00 0.00 0.00 3.18
322 323 2.162264 AAGCTAGACAGGACCCTACC 57.838 55.000 0.00 0.00 0.00 3.18
323 324 0.106619 AGCTAGACAGGACCCTACCG 60.107 60.000 0.00 0.00 34.73 4.02
324 325 1.736365 GCTAGACAGGACCCTACCGC 61.736 65.000 0.00 0.00 34.73 5.68
325 326 1.076485 TAGACAGGACCCTACCGCC 60.076 63.158 0.00 0.00 34.73 6.13
326 327 1.866483 TAGACAGGACCCTACCGCCA 61.866 60.000 0.00 0.00 34.73 5.69
327 328 2.203877 ACAGGACCCTACCGCCAA 60.204 61.111 0.00 0.00 34.73 4.52
328 329 1.833787 GACAGGACCCTACCGCCAAA 61.834 60.000 0.00 0.00 34.73 3.28
329 330 1.078426 CAGGACCCTACCGCCAAAG 60.078 63.158 0.00 0.00 34.73 2.77
330 331 1.538135 AGGACCCTACCGCCAAAGT 60.538 57.895 0.00 0.00 34.73 2.66
331 332 1.078637 GGACCCTACCGCCAAAGTC 60.079 63.158 0.00 0.00 0.00 3.01
332 333 1.078637 GACCCTACCGCCAAAGTCC 60.079 63.158 0.00 0.00 0.00 3.85
333 334 2.271173 CCCTACCGCCAAAGTCCC 59.729 66.667 0.00 0.00 0.00 4.46
334 335 2.271173 CCTACCGCCAAAGTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
335 336 2.125269 CTACCGCCAAAGTCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
336 337 3.675619 CTACCGCCAAAGTCCCCGG 62.676 68.421 0.00 0.00 45.80 5.73
340 341 4.280019 GCCAAAGTCCCCGGTGGT 62.280 66.667 0.00 0.00 33.43 4.16
341 342 2.897762 GCCAAAGTCCCCGGTGGTA 61.898 63.158 0.00 0.00 33.43 3.25
342 343 1.298667 CCAAAGTCCCCGGTGGTAG 59.701 63.158 0.00 0.00 34.77 3.18
343 344 1.298667 CAAAGTCCCCGGTGGTAGG 59.701 63.158 0.00 0.00 34.77 3.18
349 350 2.608368 CCCGGTGGTAGGGTTGGA 60.608 66.667 0.00 0.00 43.89 3.53
350 351 1.999002 CCCGGTGGTAGGGTTGGAT 60.999 63.158 0.00 0.00 43.89 3.41
351 352 0.691748 CCCGGTGGTAGGGTTGGATA 60.692 60.000 0.00 0.00 43.89 2.59
352 353 0.756903 CCGGTGGTAGGGTTGGATAG 59.243 60.000 0.00 0.00 0.00 2.08
353 354 0.106149 CGGTGGTAGGGTTGGATAGC 59.894 60.000 0.00 0.00 0.00 2.97
354 355 0.472898 GGTGGTAGGGTTGGATAGCC 59.527 60.000 0.00 0.00 45.13 3.93
367 368 6.296365 GTTGGATAGCCTACCGTTATTTTC 57.704 41.667 0.00 0.00 34.37 2.29
368 369 5.881923 TGGATAGCCTACCGTTATTTTCT 57.118 39.130 0.00 0.00 34.31 2.52
369 370 6.243216 TGGATAGCCTACCGTTATTTTCTT 57.757 37.500 0.00 0.00 34.31 2.52
370 371 6.655930 TGGATAGCCTACCGTTATTTTCTTT 58.344 36.000 0.00 0.00 34.31 2.52
371 372 6.764560 TGGATAGCCTACCGTTATTTTCTTTC 59.235 38.462 0.00 0.00 34.31 2.62
372 373 6.764560 GGATAGCCTACCGTTATTTTCTTTCA 59.235 38.462 0.00 0.00 0.00 2.69
373 374 7.281549 GGATAGCCTACCGTTATTTTCTTTCAA 59.718 37.037 0.00 0.00 0.00 2.69
374 375 6.496338 AGCCTACCGTTATTTTCTTTCAAG 57.504 37.500 0.00 0.00 0.00 3.02
375 376 6.002082 AGCCTACCGTTATTTTCTTTCAAGT 58.998 36.000 0.00 0.00 0.00 3.16
376 377 6.489022 AGCCTACCGTTATTTTCTTTCAAGTT 59.511 34.615 0.00 0.00 0.00 2.66
377 378 7.013942 AGCCTACCGTTATTTTCTTTCAAGTTT 59.986 33.333 0.00 0.00 0.00 2.66
378 379 7.325338 GCCTACCGTTATTTTCTTTCAAGTTTC 59.675 37.037 0.00 0.00 0.00 2.78
379 380 8.347035 CCTACCGTTATTTTCTTTCAAGTTTCA 58.653 33.333 0.00 0.00 0.00 2.69
380 381 9.382244 CTACCGTTATTTTCTTTCAAGTTTCAG 57.618 33.333 0.00 0.00 0.00 3.02
381 382 7.768240 ACCGTTATTTTCTTTCAAGTTTCAGT 58.232 30.769 0.00 0.00 0.00 3.41
382 383 8.248253 ACCGTTATTTTCTTTCAAGTTTCAGTT 58.752 29.630 0.00 0.00 0.00 3.16
383 384 8.743099 CCGTTATTTTCTTTCAAGTTTCAGTTC 58.257 33.333 0.00 0.00 0.00 3.01
384 385 9.503427 CGTTATTTTCTTTCAAGTTTCAGTTCT 57.497 29.630 0.00 0.00 0.00 3.01
388 389 7.624360 TTTCTTTCAAGTTTCAGTTCTAGCA 57.376 32.000 0.00 0.00 0.00 3.49
389 390 6.851222 TCTTTCAAGTTTCAGTTCTAGCAG 57.149 37.500 0.00 0.00 0.00 4.24
390 391 5.237344 TCTTTCAAGTTTCAGTTCTAGCAGC 59.763 40.000 0.00 0.00 0.00 5.25
391 392 3.403038 TCAAGTTTCAGTTCTAGCAGCC 58.597 45.455 0.00 0.00 0.00 4.85
392 393 2.086054 AGTTTCAGTTCTAGCAGCCG 57.914 50.000 0.00 0.00 0.00 5.52
393 394 1.079503 GTTTCAGTTCTAGCAGCCGG 58.920 55.000 0.00 0.00 0.00 6.13
394 395 0.673644 TTTCAGTTCTAGCAGCCGGC 60.674 55.000 21.89 21.89 45.30 6.13
404 405 4.415150 CAGCCGGCACATGACCCT 62.415 66.667 31.54 0.00 0.00 4.34
405 406 2.687200 AGCCGGCACATGACCCTA 60.687 61.111 31.54 0.00 0.00 3.53
406 407 2.513897 GCCGGCACATGACCCTAC 60.514 66.667 24.80 0.00 0.00 3.18
407 408 2.189521 CCGGCACATGACCCTACC 59.810 66.667 0.00 0.00 0.00 3.18
408 409 2.202878 CGGCACATGACCCTACCG 60.203 66.667 0.00 0.00 0.00 4.02
409 410 2.513897 GGCACATGACCCTACCGC 60.514 66.667 0.00 0.00 0.00 5.68
410 411 2.513897 GCACATGACCCTACCGCC 60.514 66.667 0.00 0.00 0.00 6.13
411 412 2.986290 CACATGACCCTACCGCCA 59.014 61.111 0.00 0.00 0.00 5.69
412 413 1.153369 CACATGACCCTACCGCCAG 60.153 63.158 0.00 0.00 0.00 4.85
413 414 2.367202 ACATGACCCTACCGCCAGG 61.367 63.158 0.00 0.00 45.13 4.45
419 420 4.621269 CCTACCGCCAGGGACTAT 57.379 61.111 0.00 0.00 43.47 2.12
420 421 2.050269 CCTACCGCCAGGGACTATG 58.950 63.158 0.00 0.00 43.47 2.23
421 422 1.472662 CCTACCGCCAGGGACTATGG 61.473 65.000 0.00 0.00 43.47 2.74
426 427 3.479203 CCAGGGACTATGGCGGCA 61.479 66.667 16.34 16.34 36.02 5.69
427 428 2.109799 CAGGGACTATGGCGGCAG 59.890 66.667 19.29 7.31 36.02 4.85
428 429 3.164269 AGGGACTATGGCGGCAGG 61.164 66.667 19.29 15.06 36.02 4.85
429 430 4.256180 GGGACTATGGCGGCAGGG 62.256 72.222 19.29 14.68 0.00 4.45
430 431 3.480133 GGACTATGGCGGCAGGGT 61.480 66.667 19.29 17.92 0.00 4.34
431 432 2.203070 GACTATGGCGGCAGGGTG 60.203 66.667 19.29 9.59 0.00 4.61
432 433 3.009115 ACTATGGCGGCAGGGTGT 61.009 61.111 19.29 10.24 0.00 4.16
433 434 2.514592 CTATGGCGGCAGGGTGTG 60.515 66.667 19.29 0.00 0.00 3.82
434 435 3.326578 TATGGCGGCAGGGTGTGT 61.327 61.111 19.29 0.22 0.00 3.72
435 436 1.966901 CTATGGCGGCAGGGTGTGTA 61.967 60.000 19.29 1.62 0.00 2.90
436 437 1.554583 TATGGCGGCAGGGTGTGTAA 61.555 55.000 19.29 0.00 0.00 2.41
437 438 3.053896 GGCGGCAGGGTGTGTAAC 61.054 66.667 3.07 0.00 37.35 2.50
445 446 4.468007 GGTGTGTAACCTTGCCGT 57.532 55.556 0.00 0.00 46.55 5.68
446 447 2.710440 GGTGTGTAACCTTGCCGTT 58.290 52.632 0.00 0.00 46.55 4.44
447 448 0.309612 GGTGTGTAACCTTGCCGTTG 59.690 55.000 0.00 0.00 46.55 4.10
448 449 1.018910 GTGTGTAACCTTGCCGTTGT 58.981 50.000 0.00 0.00 34.36 3.32
449 450 1.402613 GTGTGTAACCTTGCCGTTGTT 59.597 47.619 0.00 0.00 34.36 2.83
450 451 2.093106 TGTGTAACCTTGCCGTTGTTT 58.907 42.857 0.00 0.00 34.36 2.83
451 452 2.492484 TGTGTAACCTTGCCGTTGTTTT 59.508 40.909 0.00 0.00 34.36 2.43
452 453 3.056749 TGTGTAACCTTGCCGTTGTTTTT 60.057 39.130 0.00 0.00 34.36 1.94
453 454 3.548668 GTGTAACCTTGCCGTTGTTTTTC 59.451 43.478 0.00 0.00 0.00 2.29
454 455 2.303163 AACCTTGCCGTTGTTTTTCC 57.697 45.000 0.00 0.00 0.00 3.13
455 456 0.462375 ACCTTGCCGTTGTTTTTCCC 59.538 50.000 0.00 0.00 0.00 3.97
456 457 0.249699 CCTTGCCGTTGTTTTTCCCC 60.250 55.000 0.00 0.00 0.00 4.81
457 458 0.596341 CTTGCCGTTGTTTTTCCCCG 60.596 55.000 0.00 0.00 0.00 5.73
458 459 1.035932 TTGCCGTTGTTTTTCCCCGA 61.036 50.000 0.00 0.00 0.00 5.14
459 460 1.035932 TGCCGTTGTTTTTCCCCGAA 61.036 50.000 0.00 0.00 0.00 4.30
460 461 0.315886 GCCGTTGTTTTTCCCCGAAT 59.684 50.000 0.00 0.00 0.00 3.34
461 462 1.269883 GCCGTTGTTTTTCCCCGAATT 60.270 47.619 0.00 0.00 0.00 2.17
462 463 2.668250 CCGTTGTTTTTCCCCGAATTC 58.332 47.619 0.00 0.00 0.00 2.17
463 464 2.608506 CCGTTGTTTTTCCCCGAATTCC 60.609 50.000 0.00 0.00 0.00 3.01
464 465 2.034812 CGTTGTTTTTCCCCGAATTCCA 59.965 45.455 0.00 0.00 0.00 3.53
465 466 3.649073 GTTGTTTTTCCCCGAATTCCAG 58.351 45.455 0.00 0.00 0.00 3.86
466 467 2.952116 TGTTTTTCCCCGAATTCCAGT 58.048 42.857 0.00 0.00 0.00 4.00
467 468 3.301274 TGTTTTTCCCCGAATTCCAGTT 58.699 40.909 0.00 0.00 0.00 3.16
468 469 4.471548 TGTTTTTCCCCGAATTCCAGTTA 58.528 39.130 0.00 0.00 0.00 2.24
469 470 4.278919 TGTTTTTCCCCGAATTCCAGTTAC 59.721 41.667 0.00 0.00 0.00 2.50
470 471 3.791953 TTTCCCCGAATTCCAGTTACA 57.208 42.857 0.00 0.00 0.00 2.41
471 472 3.791953 TTCCCCGAATTCCAGTTACAA 57.208 42.857 0.00 0.00 0.00 2.41
472 473 3.062122 TCCCCGAATTCCAGTTACAAC 57.938 47.619 0.00 0.00 0.00 3.32
473 474 2.372504 TCCCCGAATTCCAGTTACAACA 59.627 45.455 0.00 0.00 0.00 3.33
474 475 2.486592 CCCCGAATTCCAGTTACAACAC 59.513 50.000 0.00 0.00 0.00 3.32
475 476 3.142951 CCCGAATTCCAGTTACAACACA 58.857 45.455 0.00 0.00 0.00 3.72
476 477 3.058501 CCCGAATTCCAGTTACAACACAC 60.059 47.826 0.00 0.00 0.00 3.82
477 478 3.813166 CCGAATTCCAGTTACAACACACT 59.187 43.478 0.00 0.00 0.00 3.55
478 479 4.274950 CCGAATTCCAGTTACAACACACTT 59.725 41.667 0.00 0.00 0.00 3.16
479 480 5.220970 CCGAATTCCAGTTACAACACACTTT 60.221 40.000 0.00 0.00 0.00 2.66
480 481 5.907391 CGAATTCCAGTTACAACACACTTTC 59.093 40.000 0.00 0.00 0.00 2.62
481 482 6.457663 CGAATTCCAGTTACAACACACTTTCA 60.458 38.462 0.00 0.00 0.00 2.69
482 483 5.554822 TTCCAGTTACAACACACTTTCAC 57.445 39.130 0.00 0.00 0.00 3.18
483 484 4.839121 TCCAGTTACAACACACTTTCACT 58.161 39.130 0.00 0.00 0.00 3.41
484 485 5.979993 TCCAGTTACAACACACTTTCACTA 58.020 37.500 0.00 0.00 0.00 2.74
485 486 6.588204 TCCAGTTACAACACACTTTCACTAT 58.412 36.000 0.00 0.00 0.00 2.12
486 487 6.481976 TCCAGTTACAACACACTTTCACTATG 59.518 38.462 0.00 0.00 0.00 2.23
487 488 6.293407 CCAGTTACAACACACTTTCACTATGG 60.293 42.308 0.00 0.00 0.00 2.74
488 489 6.481976 CAGTTACAACACACTTTCACTATGGA 59.518 38.462 0.00 0.00 0.00 3.41
489 490 6.706270 AGTTACAACACACTTTCACTATGGAG 59.294 38.462 0.00 0.00 0.00 3.86
490 491 4.389374 ACAACACACTTTCACTATGGAGG 58.611 43.478 0.00 0.00 0.00 4.30
491 492 4.102524 ACAACACACTTTCACTATGGAGGA 59.897 41.667 0.00 0.00 0.00 3.71
492 493 4.273148 ACACACTTTCACTATGGAGGAC 57.727 45.455 0.00 0.00 0.00 3.85
493 494 3.008049 ACACACTTTCACTATGGAGGACC 59.992 47.826 0.00 0.00 0.00 4.46
494 495 2.572104 ACACTTTCACTATGGAGGACCC 59.428 50.000 0.00 0.00 34.81 4.46
495 496 2.840651 CACTTTCACTATGGAGGACCCT 59.159 50.000 0.00 0.00 35.38 4.34
496 497 4.030913 CACTTTCACTATGGAGGACCCTA 58.969 47.826 0.00 0.00 35.38 3.53
497 498 4.031611 ACTTTCACTATGGAGGACCCTAC 58.968 47.826 0.00 0.00 35.38 3.18
498 499 2.769602 TCACTATGGAGGACCCTACC 57.230 55.000 0.00 0.00 35.38 3.18
499 500 1.219724 TCACTATGGAGGACCCTACCC 59.780 57.143 0.00 0.00 35.38 3.69
500 501 1.220750 CACTATGGAGGACCCTACCCT 59.779 57.143 0.00 0.00 36.57 4.34
508 509 3.797671 AGGACCCTACCCTCAAATAGT 57.202 47.619 0.00 0.00 0.00 2.12
509 510 3.385115 AGGACCCTACCCTCAAATAGTG 58.615 50.000 0.00 0.00 0.00 2.74
510 511 2.158798 GGACCCTACCCTCAAATAGTGC 60.159 54.545 0.00 0.00 0.00 4.40
511 512 1.485066 ACCCTACCCTCAAATAGTGCG 59.515 52.381 0.00 0.00 0.00 5.34
512 513 1.202651 CCCTACCCTCAAATAGTGCGG 60.203 57.143 0.00 0.00 0.00 5.69
513 514 1.485066 CCTACCCTCAAATAGTGCGGT 59.515 52.381 0.00 0.00 34.81 5.68
514 515 2.550978 CTACCCTCAAATAGTGCGGTG 58.449 52.381 0.00 0.00 33.18 4.94
515 516 0.035439 ACCCTCAAATAGTGCGGTGG 60.035 55.000 0.00 0.00 29.18 4.61
516 517 0.035439 CCCTCAAATAGTGCGGTGGT 60.035 55.000 0.00 0.00 29.18 4.16
517 518 1.208535 CCCTCAAATAGTGCGGTGGTA 59.791 52.381 0.00 0.00 29.18 3.25
518 519 2.550978 CCTCAAATAGTGCGGTGGTAG 58.449 52.381 0.00 0.00 0.00 3.18
519 520 2.093658 CCTCAAATAGTGCGGTGGTAGT 60.094 50.000 0.00 0.00 0.00 2.73
520 521 3.187700 CTCAAATAGTGCGGTGGTAGTC 58.812 50.000 0.00 0.00 0.00 2.59
521 522 2.829720 TCAAATAGTGCGGTGGTAGTCT 59.170 45.455 0.00 0.00 0.00 3.24
522 523 4.018490 TCAAATAGTGCGGTGGTAGTCTA 58.982 43.478 0.00 0.00 0.00 2.59
523 524 4.110482 CAAATAGTGCGGTGGTAGTCTAC 58.890 47.826 0.95 0.95 0.00 2.59
524 525 2.795231 TAGTGCGGTGGTAGTCTACT 57.205 50.000 9.85 0.00 0.00 2.57
525 526 2.795231 AGTGCGGTGGTAGTCTACTA 57.205 50.000 9.85 0.62 0.00 1.82
526 527 2.363683 AGTGCGGTGGTAGTCTACTAC 58.636 52.381 16.13 16.13 46.09 2.73
536 537 2.049888 AGTCTACTACACCCTACCGC 57.950 55.000 0.00 0.00 0.00 5.68
537 538 1.028130 GTCTACTACACCCTACCGCC 58.972 60.000 0.00 0.00 0.00 6.13
538 539 0.464373 TCTACTACACCCTACCGCCG 60.464 60.000 0.00 0.00 0.00 6.46
539 540 1.450531 CTACTACACCCTACCGCCGG 61.451 65.000 0.00 0.00 0.00 6.13
540 541 4.217159 CTACACCCTACCGCCGGC 62.217 72.222 19.07 19.07 0.00 6.13
547 548 3.905678 CTACCGCCGGCCTCTCTG 61.906 72.222 23.46 5.12 0.00 3.35
570 571 2.914059 GGTACGACCATTATGCCAAGT 58.086 47.619 0.00 0.00 38.42 3.16
571 572 2.870411 GGTACGACCATTATGCCAAGTC 59.130 50.000 0.00 0.00 38.42 3.01
572 573 2.779755 ACGACCATTATGCCAAGTCA 57.220 45.000 0.00 0.00 0.00 3.41
573 574 2.632377 ACGACCATTATGCCAAGTCAG 58.368 47.619 0.00 0.00 0.00 3.51
574 575 1.331756 CGACCATTATGCCAAGTCAGC 59.668 52.381 0.00 0.00 0.00 4.26
575 576 2.368439 GACCATTATGCCAAGTCAGCA 58.632 47.619 0.00 0.00 45.94 4.41
576 577 2.357009 GACCATTATGCCAAGTCAGCAG 59.643 50.000 0.00 0.00 44.90 4.24
577 578 1.066605 CCATTATGCCAAGTCAGCAGC 59.933 52.381 0.00 0.00 44.90 5.25
578 579 1.746787 CATTATGCCAAGTCAGCAGCA 59.253 47.619 0.00 0.00 44.90 4.41
579 580 1.456296 TTATGCCAAGTCAGCAGCAG 58.544 50.000 0.00 0.00 44.90 4.24
580 581 0.614812 TATGCCAAGTCAGCAGCAGA 59.385 50.000 0.00 0.00 44.90 4.26
581 582 0.251033 ATGCCAAGTCAGCAGCAGAA 60.251 50.000 0.00 0.00 44.90 3.02
582 583 0.466007 TGCCAAGTCAGCAGCAGAAA 60.466 50.000 0.00 0.00 34.69 2.52
583 584 0.670162 GCCAAGTCAGCAGCAGAAAA 59.330 50.000 0.00 0.00 0.00 2.29
584 585 1.067516 GCCAAGTCAGCAGCAGAAAAA 59.932 47.619 0.00 0.00 0.00 1.94
602 603 2.949714 AAAAGATGACGTCAACTGCG 57.050 45.000 26.49 0.00 0.00 5.18
603 604 1.148310 AAAGATGACGTCAACTGCGG 58.852 50.000 26.49 0.00 0.00 5.69
604 605 0.317160 AAGATGACGTCAACTGCGGA 59.683 50.000 26.49 0.00 0.00 5.54
605 606 0.109086 AGATGACGTCAACTGCGGAG 60.109 55.000 25.42 0.85 0.00 4.63
606 607 1.078759 GATGACGTCAACTGCGGAGG 61.079 60.000 24.13 0.00 0.00 4.30
607 608 1.816863 ATGACGTCAACTGCGGAGGT 61.817 55.000 24.13 0.00 36.21 3.85
608 609 1.174078 TGACGTCAACTGCGGAGGTA 61.174 55.000 17.62 0.00 33.90 3.08
613 614 2.603953 GTCAACTGCGGAGGTAGTTAC 58.396 52.381 9.36 0.00 45.67 2.50
620 621 1.274447 GCGGAGGTAGTTACACAACCT 59.726 52.381 4.17 4.17 46.33 3.50
625 626 4.488879 GAGGTAGTTACACAACCTTACCG 58.511 47.826 5.72 0.00 43.69 4.02
636 637 1.221021 CCTTACCGCCAACCTCCTC 59.779 63.158 0.00 0.00 0.00 3.71
660 662 3.677424 GCGGTAGCAAAAGAGTCAGATCT 60.677 47.826 0.00 0.00 44.35 2.75
661 663 4.109050 CGGTAGCAAAAGAGTCAGATCTC 58.891 47.826 0.00 0.00 34.96 2.75
662 664 4.380973 CGGTAGCAAAAGAGTCAGATCTCA 60.381 45.833 0.00 0.00 36.97 3.27
664 666 6.112058 GGTAGCAAAAGAGTCAGATCTCAAT 58.888 40.000 0.00 0.00 36.97 2.57
669 671 7.866393 AGCAAAAGAGTCAGATCTCAATTTTTG 59.134 33.333 16.75 16.75 38.56 2.44
706 708 3.118519 GGGTTAGATCCGGCTGAACTTTA 60.119 47.826 0.00 0.00 0.00 1.85
711 713 4.003648 AGATCCGGCTGAACTTTACAAAG 58.996 43.478 0.00 0.13 41.73 2.77
714 716 4.200874 TCCGGCTGAACTTTACAAAGAAA 58.799 39.130 8.65 0.00 39.31 2.52
715 717 4.641094 TCCGGCTGAACTTTACAAAGAAAA 59.359 37.500 8.65 0.00 39.31 2.29
716 718 5.125739 TCCGGCTGAACTTTACAAAGAAAAA 59.874 36.000 8.65 0.00 39.31 1.94
908 918 7.606456 ACTTTGCCGAAAAAGAATCATAGTAGA 59.394 33.333 14.36 0.00 39.12 2.59
970 980 1.654220 CTGGACACACGCAAAAGGG 59.346 57.895 0.00 0.00 0.00 3.95
998 1008 2.158755 GGGAGAGAGAGAGAGAGACTGG 60.159 59.091 0.00 0.00 0.00 4.00
999 1009 2.158755 GGAGAGAGAGAGAGAGACTGGG 60.159 59.091 0.00 0.00 0.00 4.45
1071 1081 4.074854 CCCCCTCTTCTTCCTCCC 57.925 66.667 0.00 0.00 0.00 4.30
1114 1124 2.185350 CGCCGCCTGATGAAGAGT 59.815 61.111 0.00 0.00 0.00 3.24
1327 1341 9.376075 CTGCTTAGATTTCAGACAGAGAATTAA 57.624 33.333 0.00 0.00 0.00 1.40
1529 1543 3.503839 AGTTCCCCACCCCGCAAA 61.504 61.111 0.00 0.00 0.00 3.68
1888 1908 1.224039 GGAGCAGGAGCAAGAGCAT 59.776 57.895 0.00 0.00 45.49 3.79
2009 2041 8.546083 AGAGATCTGTTGAGGATGTTTATAGT 57.454 34.615 0.00 0.00 0.00 2.12
2266 2298 2.595238 AGTACTAACAGATAGCCCCCG 58.405 52.381 0.00 0.00 34.78 5.73
2329 2361 2.292828 CCTTTTCAGAGGCAGGGAAA 57.707 50.000 0.00 0.00 0.00 3.13
2390 2422 9.578439 GAATTTGAAGATTTTGAGAATGGTAGG 57.422 33.333 0.00 0.00 0.00 3.18
2441 2473 5.046735 CAGGGATAGATCACCTGGAATACTG 60.047 48.000 14.44 0.00 46.24 2.74
2719 2751 6.151144 ACATTTACAACAATCCCTACAGCTTC 59.849 38.462 0.00 0.00 0.00 3.86
3184 4305 6.701841 CCGTTGTCTGCAGTTCAGTTATATAT 59.298 38.462 14.67 0.00 43.32 0.86
3185 4306 7.865889 CCGTTGTCTGCAGTTCAGTTATATATA 59.134 37.037 14.67 0.00 43.32 0.86
3312 4434 1.064208 ACTGCTCGATAGTAGCACACG 59.936 52.381 1.02 0.00 44.78 4.49
3405 4552 4.903054 TGAGCTGAAATATAGATGGCTGG 58.097 43.478 0.00 0.00 0.00 4.85
3447 4594 4.662966 ATCCCATATAGCAAAGCCATCA 57.337 40.909 0.00 0.00 0.00 3.07
3600 4801 3.731867 CGCAGTTTGGAGATTTATGTGCC 60.732 47.826 0.00 0.00 0.00 5.01
3621 6561 3.364864 CCGTTGCAGTTCGAAATGATGAA 60.365 43.478 28.12 14.02 0.00 2.57
3622 6562 3.842428 CGTTGCAGTTCGAAATGATGAAG 59.158 43.478 28.12 11.28 0.00 3.02
3623 6563 4.377328 CGTTGCAGTTCGAAATGATGAAGA 60.377 41.667 28.12 4.63 0.00 2.87
3705 6645 4.263771 TGGGTTCCTATCTTGACCTTTTCC 60.264 45.833 0.00 0.00 32.73 3.13
3758 6708 1.005630 CGCTAGCCTGCCCAGATAC 60.006 63.158 9.66 0.00 0.00 2.24
3793 6744 2.700897 ACCTCCATAGAAATCTGTCCCG 59.299 50.000 0.00 0.00 0.00 5.14
3856 6810 5.046529 AGACAGATATAACTCAGCTTTGCG 58.953 41.667 0.00 0.00 0.00 4.85
3948 7090 8.085296 GCTGCTGTAACAGTATATGATTAGAGT 58.915 37.037 0.00 0.00 39.96 3.24
4053 7198 2.637383 GCCGTCAGTTCCGAGACCT 61.637 63.158 0.00 0.00 0.00 3.85
4054 7199 1.965219 CCGTCAGTTCCGAGACCTT 59.035 57.895 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.711399 AGTAGTTCAACCTAACCACCAAC 58.289 43.478 0.00 0.00 0.00 3.77
84 85 7.148689 CGATAACAAGTAGTTCAACCTAACCAC 60.149 40.741 0.00 0.00 41.64 4.16
90 91 5.048504 TCGACGATAACAAGTAGTTCAACCT 60.049 40.000 0.00 0.00 41.64 3.50
95 96 6.034683 AGCAAATCGACGATAACAAGTAGTTC 59.965 38.462 11.42 0.00 41.64 3.01
113 114 7.645340 CCAACATAGCAAATAGTGTAGCAAATC 59.355 37.037 0.00 0.00 0.00 2.17
134 135 9.693739 ATATCAAATAGGTTTACATGTCCAACA 57.306 29.630 18.06 4.11 0.00 3.33
164 165 9.891535 CGACATAAATGATATATCAACACATCG 57.108 33.333 19.03 17.75 40.69 3.84
175 176 7.495606 GCATCCCACATCGACATAAATGATATA 59.504 37.037 0.00 0.00 0.00 0.86
176 177 6.317140 GCATCCCACATCGACATAAATGATAT 59.683 38.462 0.00 0.00 0.00 1.63
182 183 3.274095 TGCATCCCACATCGACATAAA 57.726 42.857 0.00 0.00 0.00 1.40
187 188 1.382522 AACATGCATCCCACATCGAC 58.617 50.000 0.00 0.00 0.00 4.20
190 191 6.016024 ACACATTATAACATGCATCCCACATC 60.016 38.462 0.00 0.00 0.00 3.06
196 197 6.866010 TCTCACACATTATAACATGCATCC 57.134 37.500 0.00 0.00 0.00 3.51
275 276 8.722394 GGGTTTGTGAAAAACTTGTTCATTTTA 58.278 29.630 0.00 0.00 37.34 1.52
276 277 7.446931 AGGGTTTGTGAAAAACTTGTTCATTTT 59.553 29.630 0.00 0.00 37.34 1.82
277 278 6.939730 AGGGTTTGTGAAAAACTTGTTCATTT 59.060 30.769 0.00 0.00 37.34 2.32
278 279 6.472016 AGGGTTTGTGAAAAACTTGTTCATT 58.528 32.000 0.00 0.00 37.34 2.57
279 280 6.048732 AGGGTTTGTGAAAAACTTGTTCAT 57.951 33.333 0.00 0.00 37.34 2.57
280 281 5.476091 AGGGTTTGTGAAAAACTTGTTCA 57.524 34.783 0.00 0.00 32.62 3.18
281 282 6.035650 GCTTAGGGTTTGTGAAAAACTTGTTC 59.964 38.462 0.00 0.00 0.00 3.18
282 283 5.872617 GCTTAGGGTTTGTGAAAAACTTGTT 59.127 36.000 0.00 0.00 0.00 2.83
283 284 5.186992 AGCTTAGGGTTTGTGAAAAACTTGT 59.813 36.000 0.00 0.00 0.00 3.16
284 285 5.660460 AGCTTAGGGTTTGTGAAAAACTTG 58.340 37.500 0.00 0.00 0.00 3.16
285 286 5.932619 AGCTTAGGGTTTGTGAAAAACTT 57.067 34.783 0.00 0.00 0.00 2.66
286 287 6.262496 GTCTAGCTTAGGGTTTGTGAAAAACT 59.738 38.462 0.00 0.00 0.00 2.66
287 288 6.038936 TGTCTAGCTTAGGGTTTGTGAAAAAC 59.961 38.462 0.00 0.00 0.00 2.43
288 289 6.123651 TGTCTAGCTTAGGGTTTGTGAAAAA 58.876 36.000 0.00 0.00 0.00 1.94
289 290 5.686753 TGTCTAGCTTAGGGTTTGTGAAAA 58.313 37.500 0.00 0.00 0.00 2.29
290 291 5.298989 TGTCTAGCTTAGGGTTTGTGAAA 57.701 39.130 0.00 0.00 0.00 2.69
291 292 4.262894 CCTGTCTAGCTTAGGGTTTGTGAA 60.263 45.833 0.00 0.00 0.00 3.18
292 293 3.260884 CCTGTCTAGCTTAGGGTTTGTGA 59.739 47.826 0.00 0.00 0.00 3.58
293 294 3.260884 TCCTGTCTAGCTTAGGGTTTGTG 59.739 47.826 0.00 0.00 32.39 3.33
294 295 3.261137 GTCCTGTCTAGCTTAGGGTTTGT 59.739 47.826 0.00 0.00 32.39 2.83
295 296 3.369576 GGTCCTGTCTAGCTTAGGGTTTG 60.370 52.174 0.00 0.00 32.39 2.93
296 297 2.838813 GGTCCTGTCTAGCTTAGGGTTT 59.161 50.000 0.00 0.00 32.39 3.27
297 298 2.468915 GGTCCTGTCTAGCTTAGGGTT 58.531 52.381 0.00 0.00 32.39 4.11
298 299 1.343176 GGGTCCTGTCTAGCTTAGGGT 60.343 57.143 0.00 0.00 32.39 4.34
299 300 1.062810 AGGGTCCTGTCTAGCTTAGGG 60.063 57.143 0.00 0.00 32.39 3.53
300 301 2.463047 AGGGTCCTGTCTAGCTTAGG 57.537 55.000 0.00 0.00 0.00 2.69
301 302 3.224269 GGTAGGGTCCTGTCTAGCTTAG 58.776 54.545 0.00 0.00 32.91 2.18
302 303 2.422519 CGGTAGGGTCCTGTCTAGCTTA 60.423 54.545 0.00 0.00 33.33 3.09
303 304 1.685491 CGGTAGGGTCCTGTCTAGCTT 60.685 57.143 0.00 0.00 33.33 3.74
304 305 0.106619 CGGTAGGGTCCTGTCTAGCT 60.107 60.000 0.00 0.00 33.33 3.32
305 306 1.736365 GCGGTAGGGTCCTGTCTAGC 61.736 65.000 0.00 0.00 0.00 3.42
306 307 1.108132 GGCGGTAGGGTCCTGTCTAG 61.108 65.000 0.00 0.00 0.00 2.43
307 308 1.076485 GGCGGTAGGGTCCTGTCTA 60.076 63.158 0.00 0.00 0.00 2.59
308 309 2.363925 GGCGGTAGGGTCCTGTCT 60.364 66.667 0.00 0.00 0.00 3.41
309 310 1.833787 TTTGGCGGTAGGGTCCTGTC 61.834 60.000 0.00 0.00 0.00 3.51
310 311 1.838073 CTTTGGCGGTAGGGTCCTGT 61.838 60.000 0.00 0.00 0.00 4.00
311 312 1.078426 CTTTGGCGGTAGGGTCCTG 60.078 63.158 0.00 0.00 0.00 3.86
312 313 1.538135 ACTTTGGCGGTAGGGTCCT 60.538 57.895 0.00 0.00 0.00 3.85
313 314 1.078637 GACTTTGGCGGTAGGGTCC 60.079 63.158 0.00 0.00 0.00 4.46
314 315 1.078637 GGACTTTGGCGGTAGGGTC 60.079 63.158 0.00 0.00 0.00 4.46
315 316 2.599757 GGGACTTTGGCGGTAGGGT 61.600 63.158 0.00 0.00 0.00 4.34
316 317 2.271173 GGGACTTTGGCGGTAGGG 59.729 66.667 0.00 0.00 0.00 3.53
317 318 2.271173 GGGGACTTTGGCGGTAGG 59.729 66.667 0.00 0.00 0.00 3.18
318 319 2.125269 CGGGGACTTTGGCGGTAG 60.125 66.667 0.00 0.00 0.00 3.18
319 320 3.708544 CCGGGGACTTTGGCGGTA 61.709 66.667 0.00 0.00 0.00 4.02
323 324 2.814913 CTACCACCGGGGACTTTGGC 62.815 65.000 4.41 0.00 41.15 4.52
324 325 1.298667 CTACCACCGGGGACTTTGG 59.701 63.158 4.41 4.80 41.15 3.28
325 326 1.298667 CCTACCACCGGGGACTTTG 59.701 63.158 4.41 0.00 41.15 2.77
326 327 1.921857 CCCTACCACCGGGGACTTT 60.922 63.158 4.41 0.00 45.18 2.66
327 328 2.285144 CCCTACCACCGGGGACTT 60.285 66.667 4.41 0.00 45.18 3.01
328 329 3.184123 AACCCTACCACCGGGGACT 62.184 63.158 4.41 0.00 46.40 3.85
329 330 2.608678 AACCCTACCACCGGGGAC 60.609 66.667 4.41 0.00 46.40 4.46
330 331 2.608368 CAACCCTACCACCGGGGA 60.608 66.667 4.41 0.00 46.40 4.81
331 332 3.723922 CCAACCCTACCACCGGGG 61.724 72.222 6.32 0.00 46.40 5.73
333 334 0.756903 CTATCCAACCCTACCACCGG 59.243 60.000 0.00 0.00 0.00 5.28
334 335 0.106149 GCTATCCAACCCTACCACCG 59.894 60.000 0.00 0.00 0.00 4.94
335 336 0.472898 GGCTATCCAACCCTACCACC 59.527 60.000 0.00 0.00 0.00 4.61
336 337 1.508256 AGGCTATCCAACCCTACCAC 58.492 55.000 0.00 0.00 33.74 4.16
337 338 2.686119 GTAGGCTATCCAACCCTACCA 58.314 52.381 0.00 0.00 43.31 3.25
339 340 1.617357 CGGTAGGCTATCCAACCCTAC 59.383 57.143 0.00 7.39 46.60 3.18
340 341 1.218704 ACGGTAGGCTATCCAACCCTA 59.781 52.381 0.00 0.00 33.74 3.53
341 342 0.031414 ACGGTAGGCTATCCAACCCT 60.031 55.000 0.00 0.00 33.74 4.34
342 343 0.835276 AACGGTAGGCTATCCAACCC 59.165 55.000 0.00 0.00 33.74 4.11
343 344 4.347360 AATAACGGTAGGCTATCCAACC 57.653 45.455 0.00 0.00 33.74 3.77
344 345 6.053650 AGAAAATAACGGTAGGCTATCCAAC 58.946 40.000 0.00 0.00 33.74 3.77
345 346 6.243216 AGAAAATAACGGTAGGCTATCCAA 57.757 37.500 0.00 0.00 33.74 3.53
346 347 5.881923 AGAAAATAACGGTAGGCTATCCA 57.118 39.130 0.00 0.00 33.74 3.41
347 348 6.764560 TGAAAGAAAATAACGGTAGGCTATCC 59.235 38.462 0.00 0.19 0.00 2.59
348 349 7.781548 TGAAAGAAAATAACGGTAGGCTATC 57.218 36.000 0.00 0.00 0.00 2.08
349 350 7.827729 ACTTGAAAGAAAATAACGGTAGGCTAT 59.172 33.333 0.00 0.00 0.00 2.97
350 351 7.163441 ACTTGAAAGAAAATAACGGTAGGCTA 58.837 34.615 0.00 0.00 0.00 3.93
351 352 6.002082 ACTTGAAAGAAAATAACGGTAGGCT 58.998 36.000 0.00 0.00 0.00 4.58
352 353 6.250344 ACTTGAAAGAAAATAACGGTAGGC 57.750 37.500 0.00 0.00 0.00 3.93
353 354 8.347035 TGAAACTTGAAAGAAAATAACGGTAGG 58.653 33.333 0.00 0.00 0.00 3.18
354 355 9.382244 CTGAAACTTGAAAGAAAATAACGGTAG 57.618 33.333 0.00 0.00 0.00 3.18
355 356 8.895737 ACTGAAACTTGAAAGAAAATAACGGTA 58.104 29.630 0.00 0.00 0.00 4.02
356 357 7.768240 ACTGAAACTTGAAAGAAAATAACGGT 58.232 30.769 0.00 0.00 0.00 4.83
357 358 8.628882 AACTGAAACTTGAAAGAAAATAACGG 57.371 30.769 0.00 0.00 0.00 4.44
358 359 9.503427 AGAACTGAAACTTGAAAGAAAATAACG 57.497 29.630 0.00 0.00 0.00 3.18
362 363 8.686334 TGCTAGAACTGAAACTTGAAAGAAAAT 58.314 29.630 0.00 0.00 0.00 1.82
363 364 8.050778 TGCTAGAACTGAAACTTGAAAGAAAA 57.949 30.769 0.00 0.00 0.00 2.29
364 365 7.624360 TGCTAGAACTGAAACTTGAAAGAAA 57.376 32.000 0.00 0.00 0.00 2.52
365 366 6.238484 GCTGCTAGAACTGAAACTTGAAAGAA 60.238 38.462 0.00 0.00 0.00 2.52
366 367 5.237344 GCTGCTAGAACTGAAACTTGAAAGA 59.763 40.000 0.00 0.00 0.00 2.52
367 368 5.447573 GCTGCTAGAACTGAAACTTGAAAG 58.552 41.667 0.00 0.00 0.00 2.62
368 369 4.275936 GGCTGCTAGAACTGAAACTTGAAA 59.724 41.667 0.00 0.00 0.00 2.69
369 370 3.815401 GGCTGCTAGAACTGAAACTTGAA 59.185 43.478 0.00 0.00 0.00 2.69
370 371 3.403038 GGCTGCTAGAACTGAAACTTGA 58.597 45.455 0.00 0.00 0.00 3.02
371 372 2.158449 CGGCTGCTAGAACTGAAACTTG 59.842 50.000 0.00 0.00 0.00 3.16
372 373 2.417719 CGGCTGCTAGAACTGAAACTT 58.582 47.619 0.00 0.00 0.00 2.66
373 374 1.338200 CCGGCTGCTAGAACTGAAACT 60.338 52.381 0.00 0.00 0.00 2.66
374 375 1.079503 CCGGCTGCTAGAACTGAAAC 58.920 55.000 0.00 0.00 0.00 2.78
375 376 0.673644 GCCGGCTGCTAGAACTGAAA 60.674 55.000 22.15 0.00 36.87 2.69
376 377 1.079127 GCCGGCTGCTAGAACTGAA 60.079 57.895 22.15 0.00 36.87 3.02
377 378 2.282783 TGCCGGCTGCTAGAACTGA 61.283 57.895 29.70 0.00 42.00 3.41
378 379 2.103042 GTGCCGGCTGCTAGAACTG 61.103 63.158 29.70 0.00 42.00 3.16
379 380 1.903877 ATGTGCCGGCTGCTAGAACT 61.904 55.000 29.70 2.64 42.00 3.01
380 381 1.450312 ATGTGCCGGCTGCTAGAAC 60.450 57.895 29.70 16.08 42.00 3.01
381 382 1.450134 CATGTGCCGGCTGCTAGAA 60.450 57.895 29.70 1.01 42.00 2.10
382 383 2.187685 CATGTGCCGGCTGCTAGA 59.812 61.111 29.70 5.77 42.00 2.43
383 384 2.176273 GTCATGTGCCGGCTGCTAG 61.176 63.158 29.70 13.77 42.00 3.42
384 385 2.125147 GTCATGTGCCGGCTGCTA 60.125 61.111 29.70 11.50 42.00 3.49
387 388 3.030168 TAGGGTCATGTGCCGGCTG 62.030 63.158 29.70 18.32 0.00 4.85
388 389 2.687200 TAGGGTCATGTGCCGGCT 60.687 61.111 29.70 3.84 0.00 5.52
389 390 2.513897 GTAGGGTCATGTGCCGGC 60.514 66.667 22.73 22.73 0.00 6.13
390 391 2.189521 GGTAGGGTCATGTGCCGG 59.810 66.667 0.00 0.00 0.00 6.13
391 392 2.202878 CGGTAGGGTCATGTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
392 393 2.513897 GCGGTAGGGTCATGTGCC 60.514 66.667 0.00 0.00 0.00 5.01
393 394 2.513897 GGCGGTAGGGTCATGTGC 60.514 66.667 0.00 0.00 0.00 4.57
394 395 1.153369 CTGGCGGTAGGGTCATGTG 60.153 63.158 0.00 0.00 0.00 3.21
395 396 2.367202 CCTGGCGGTAGGGTCATGT 61.367 63.158 0.00 0.00 34.06 3.21
396 397 2.505982 CCTGGCGGTAGGGTCATG 59.494 66.667 0.00 0.00 34.06 3.07
402 403 1.472662 CCATAGTCCCTGGCGGTAGG 61.473 65.000 0.00 0.00 37.59 3.18
403 404 2.050269 CCATAGTCCCTGGCGGTAG 58.950 63.158 0.00 0.00 0.00 3.18
404 405 4.288234 CCATAGTCCCTGGCGGTA 57.712 61.111 0.00 0.00 0.00 4.02
409 410 3.466791 CTGCCGCCATAGTCCCTGG 62.467 68.421 0.00 0.00 36.81 4.45
410 411 2.109799 CTGCCGCCATAGTCCCTG 59.890 66.667 0.00 0.00 0.00 4.45
411 412 3.164269 CCTGCCGCCATAGTCCCT 61.164 66.667 0.00 0.00 0.00 4.20
412 413 4.256180 CCCTGCCGCCATAGTCCC 62.256 72.222 0.00 0.00 0.00 4.46
413 414 3.480133 ACCCTGCCGCCATAGTCC 61.480 66.667 0.00 0.00 0.00 3.85
414 415 2.203070 CACCCTGCCGCCATAGTC 60.203 66.667 0.00 0.00 0.00 2.59
415 416 3.009115 ACACCCTGCCGCCATAGT 61.009 61.111 0.00 0.00 0.00 2.12
416 417 1.966901 TACACACCCTGCCGCCATAG 61.967 60.000 0.00 0.00 0.00 2.23
417 418 1.554583 TTACACACCCTGCCGCCATA 61.555 55.000 0.00 0.00 0.00 2.74
418 419 2.901281 TTACACACCCTGCCGCCAT 61.901 57.895 0.00 0.00 0.00 4.40
419 420 3.561241 TTACACACCCTGCCGCCA 61.561 61.111 0.00 0.00 0.00 5.69
420 421 3.053896 GTTACACACCCTGCCGCC 61.054 66.667 0.00 0.00 0.00 6.13
421 422 3.053896 GGTTACACACCCTGCCGC 61.054 66.667 0.00 0.00 40.19 6.53
429 430 1.018910 ACAACGGCAAGGTTACACAC 58.981 50.000 0.00 0.00 0.00 3.82
430 431 1.752683 AACAACGGCAAGGTTACACA 58.247 45.000 0.00 0.00 0.00 3.72
431 432 2.855660 AAACAACGGCAAGGTTACAC 57.144 45.000 0.00 0.00 0.00 2.90
432 433 3.429135 GGAAAAACAACGGCAAGGTTACA 60.429 43.478 0.00 0.00 0.00 2.41
433 434 3.117794 GGAAAAACAACGGCAAGGTTAC 58.882 45.455 0.00 0.00 0.00 2.50
434 435 2.101082 GGGAAAAACAACGGCAAGGTTA 59.899 45.455 0.00 0.00 0.00 2.85
435 436 1.134640 GGGAAAAACAACGGCAAGGTT 60.135 47.619 0.00 0.00 0.00 3.50
436 437 0.462375 GGGAAAAACAACGGCAAGGT 59.538 50.000 0.00 0.00 0.00 3.50
437 438 0.249699 GGGGAAAAACAACGGCAAGG 60.250 55.000 0.00 0.00 0.00 3.61
438 439 0.596341 CGGGGAAAAACAACGGCAAG 60.596 55.000 0.00 0.00 0.00 4.01
439 440 1.035932 TCGGGGAAAAACAACGGCAA 61.036 50.000 0.00 0.00 0.00 4.52
440 441 1.035932 TTCGGGGAAAAACAACGGCA 61.036 50.000 0.00 0.00 0.00 5.69
441 442 0.315886 ATTCGGGGAAAAACAACGGC 59.684 50.000 0.00 0.00 0.00 5.68
442 443 2.608506 GGAATTCGGGGAAAAACAACGG 60.609 50.000 0.00 0.00 0.00 4.44
443 444 2.034812 TGGAATTCGGGGAAAAACAACG 59.965 45.455 0.00 0.00 0.00 4.10
444 445 3.069016 ACTGGAATTCGGGGAAAAACAAC 59.931 43.478 0.00 0.00 0.00 3.32
445 446 3.301274 ACTGGAATTCGGGGAAAAACAA 58.699 40.909 0.00 0.00 0.00 2.83
446 447 2.952116 ACTGGAATTCGGGGAAAAACA 58.048 42.857 0.00 0.00 0.00 2.83
447 448 4.278919 TGTAACTGGAATTCGGGGAAAAAC 59.721 41.667 0.00 0.00 0.00 2.43
448 449 4.471548 TGTAACTGGAATTCGGGGAAAAA 58.528 39.130 0.00 0.00 0.00 1.94
449 450 4.101645 TGTAACTGGAATTCGGGGAAAA 57.898 40.909 0.00 0.00 0.00 2.29
450 451 3.791953 TGTAACTGGAATTCGGGGAAA 57.208 42.857 0.00 0.00 0.00 3.13
451 452 3.181442 TGTTGTAACTGGAATTCGGGGAA 60.181 43.478 0.00 0.00 0.00 3.97
452 453 2.372504 TGTTGTAACTGGAATTCGGGGA 59.627 45.455 0.00 0.00 0.00 4.81
453 454 2.486592 GTGTTGTAACTGGAATTCGGGG 59.513 50.000 0.00 0.00 0.00 5.73
454 455 3.058501 GTGTGTTGTAACTGGAATTCGGG 60.059 47.826 0.00 0.00 0.00 5.14
455 456 3.813166 AGTGTGTTGTAACTGGAATTCGG 59.187 43.478 0.00 0.00 0.00 4.30
456 457 5.418310 AAGTGTGTTGTAACTGGAATTCG 57.582 39.130 0.00 0.00 0.00 3.34
457 458 6.691388 GTGAAAGTGTGTTGTAACTGGAATTC 59.309 38.462 0.00 0.00 0.00 2.17
458 459 6.377146 AGTGAAAGTGTGTTGTAACTGGAATT 59.623 34.615 0.00 0.00 0.00 2.17
459 460 5.885912 AGTGAAAGTGTGTTGTAACTGGAAT 59.114 36.000 0.00 0.00 0.00 3.01
460 461 5.250200 AGTGAAAGTGTGTTGTAACTGGAA 58.750 37.500 0.00 0.00 0.00 3.53
461 462 4.839121 AGTGAAAGTGTGTTGTAACTGGA 58.161 39.130 0.00 0.00 0.00 3.86
462 463 6.293407 CCATAGTGAAAGTGTGTTGTAACTGG 60.293 42.308 0.00 0.00 0.00 4.00
463 464 6.481976 TCCATAGTGAAAGTGTGTTGTAACTG 59.518 38.462 0.00 0.00 0.00 3.16
464 465 6.588204 TCCATAGTGAAAGTGTGTTGTAACT 58.412 36.000 0.00 0.00 0.00 2.24
465 466 6.073222 CCTCCATAGTGAAAGTGTGTTGTAAC 60.073 42.308 0.00 0.00 0.00 2.50
466 467 5.995282 CCTCCATAGTGAAAGTGTGTTGTAA 59.005 40.000 0.00 0.00 0.00 2.41
467 468 5.305902 TCCTCCATAGTGAAAGTGTGTTGTA 59.694 40.000 0.00 0.00 0.00 2.41
468 469 4.102524 TCCTCCATAGTGAAAGTGTGTTGT 59.897 41.667 0.00 0.00 0.00 3.32
469 470 4.452455 GTCCTCCATAGTGAAAGTGTGTTG 59.548 45.833 0.00 0.00 0.00 3.33
470 471 4.505039 GGTCCTCCATAGTGAAAGTGTGTT 60.505 45.833 0.00 0.00 0.00 3.32
471 472 3.008049 GGTCCTCCATAGTGAAAGTGTGT 59.992 47.826 0.00 0.00 0.00 3.72
472 473 3.600388 GGTCCTCCATAGTGAAAGTGTG 58.400 50.000 0.00 0.00 0.00 3.82
473 474 2.572104 GGGTCCTCCATAGTGAAAGTGT 59.428 50.000 0.00 0.00 35.00 3.55
474 475 2.840651 AGGGTCCTCCATAGTGAAAGTG 59.159 50.000 0.00 0.00 38.24 3.16
475 476 3.207044 AGGGTCCTCCATAGTGAAAGT 57.793 47.619 0.00 0.00 38.24 2.66
476 477 3.388350 GGTAGGGTCCTCCATAGTGAAAG 59.612 52.174 0.00 0.00 38.24 2.62
477 478 3.381335 GGTAGGGTCCTCCATAGTGAAA 58.619 50.000 0.00 0.00 38.24 2.69
478 479 2.359994 GGGTAGGGTCCTCCATAGTGAA 60.360 54.545 0.00 0.00 38.24 3.18
479 480 1.219724 GGGTAGGGTCCTCCATAGTGA 59.780 57.143 0.00 0.00 38.24 3.41
480 481 1.220750 AGGGTAGGGTCCTCCATAGTG 59.779 57.143 0.00 0.00 38.24 2.74
481 482 1.504221 GAGGGTAGGGTCCTCCATAGT 59.496 57.143 0.00 0.00 43.71 2.12
482 483 2.312424 GAGGGTAGGGTCCTCCATAG 57.688 60.000 0.00 0.00 43.71 2.23
488 489 3.385115 CACTATTTGAGGGTAGGGTCCT 58.615 50.000 0.00 0.00 37.33 3.85
489 490 2.158798 GCACTATTTGAGGGTAGGGTCC 60.159 54.545 0.00 0.00 0.00 4.46
490 491 2.483188 CGCACTATTTGAGGGTAGGGTC 60.483 54.545 0.00 0.00 0.00 4.46
491 492 1.485066 CGCACTATTTGAGGGTAGGGT 59.515 52.381 0.00 0.00 0.00 4.34
492 493 1.202651 CCGCACTATTTGAGGGTAGGG 60.203 57.143 0.00 0.00 41.41 3.53
493 494 2.240493 CCGCACTATTTGAGGGTAGG 57.760 55.000 0.00 0.00 41.41 3.18
499 500 3.119101 AGACTACCACCGCACTATTTGAG 60.119 47.826 0.00 0.00 0.00 3.02
500 501 2.829720 AGACTACCACCGCACTATTTGA 59.170 45.455 0.00 0.00 0.00 2.69
501 502 3.247006 AGACTACCACCGCACTATTTG 57.753 47.619 0.00 0.00 0.00 2.32
502 503 4.021916 AGTAGACTACCACCGCACTATTT 58.978 43.478 9.06 0.00 0.00 1.40
503 504 3.629087 AGTAGACTACCACCGCACTATT 58.371 45.455 9.06 0.00 0.00 1.73
504 505 3.294038 AGTAGACTACCACCGCACTAT 57.706 47.619 9.06 0.00 0.00 2.12
505 506 2.795231 AGTAGACTACCACCGCACTA 57.205 50.000 9.06 0.00 0.00 2.74
506 507 2.290514 TGTAGTAGACTACCACCGCACT 60.291 50.000 15.51 0.00 46.22 4.40
507 508 2.086869 TGTAGTAGACTACCACCGCAC 58.913 52.381 15.51 0.00 46.22 5.34
508 509 2.086869 GTGTAGTAGACTACCACCGCA 58.913 52.381 15.51 0.00 46.22 5.69
509 510 1.403323 GGTGTAGTAGACTACCACCGC 59.597 57.143 19.23 10.42 46.22 5.68
510 511 2.019984 GGGTGTAGTAGACTACCACCG 58.980 57.143 23.68 0.00 46.22 4.94
511 512 3.378861 AGGGTGTAGTAGACTACCACC 57.621 52.381 23.07 23.07 46.22 4.61
514 515 3.471680 CGGTAGGGTGTAGTAGACTACC 58.528 54.545 15.51 8.70 46.22 3.18
515 516 2.875317 GCGGTAGGGTGTAGTAGACTAC 59.125 54.545 12.09 12.09 46.78 2.73
516 517 2.158755 GGCGGTAGGGTGTAGTAGACTA 60.159 54.545 0.00 0.00 0.00 2.59
517 518 1.409381 GGCGGTAGGGTGTAGTAGACT 60.409 57.143 0.00 0.00 0.00 3.24
518 519 1.028130 GGCGGTAGGGTGTAGTAGAC 58.972 60.000 0.00 0.00 0.00 2.59
519 520 0.464373 CGGCGGTAGGGTGTAGTAGA 60.464 60.000 0.00 0.00 0.00 2.59
520 521 1.450531 CCGGCGGTAGGGTGTAGTAG 61.451 65.000 19.97 0.00 0.00 2.57
521 522 1.453745 CCGGCGGTAGGGTGTAGTA 60.454 63.158 19.97 0.00 0.00 1.82
522 523 2.757099 CCGGCGGTAGGGTGTAGT 60.757 66.667 19.97 0.00 0.00 2.73
523 524 4.217159 GCCGGCGGTAGGGTGTAG 62.217 72.222 28.82 0.00 0.00 2.74
530 531 3.905678 CAGAGAGGCCGGCGGTAG 61.906 72.222 28.82 3.92 0.00 3.18
540 541 2.772691 GGTCGTACCGCCAGAGAGG 61.773 68.421 0.00 0.00 39.23 3.69
541 542 1.384989 ATGGTCGTACCGCCAGAGAG 61.385 60.000 8.70 0.00 42.58 3.20
542 543 0.968901 AATGGTCGTACCGCCAGAGA 60.969 55.000 8.70 0.00 42.58 3.10
543 544 0.742505 TAATGGTCGTACCGCCAGAG 59.257 55.000 8.70 0.00 42.58 3.35
544 545 1.067974 CATAATGGTCGTACCGCCAGA 59.932 52.381 8.70 1.21 42.58 3.86
545 546 1.497991 CATAATGGTCGTACCGCCAG 58.502 55.000 8.70 0.00 42.58 4.85
546 547 0.531090 GCATAATGGTCGTACCGCCA 60.531 55.000 5.64 5.64 42.58 5.69
547 548 1.226030 GGCATAATGGTCGTACCGCC 61.226 60.000 0.00 0.00 42.58 6.13
548 549 0.531090 TGGCATAATGGTCGTACCGC 60.531 55.000 0.00 0.00 42.58 5.68
549 550 1.864711 CTTGGCATAATGGTCGTACCG 59.135 52.381 0.00 0.00 42.58 4.02
550 551 2.870411 GACTTGGCATAATGGTCGTACC 59.130 50.000 0.00 0.00 39.22 3.34
551 552 3.527533 TGACTTGGCATAATGGTCGTAC 58.472 45.455 0.00 0.00 0.00 3.67
552 553 3.792401 CTGACTTGGCATAATGGTCGTA 58.208 45.455 0.00 0.00 0.00 3.43
553 554 2.632377 CTGACTTGGCATAATGGTCGT 58.368 47.619 0.00 0.00 0.00 4.34
554 555 1.331756 GCTGACTTGGCATAATGGTCG 59.668 52.381 0.00 0.00 0.00 4.79
555 556 2.357009 CTGCTGACTTGGCATAATGGTC 59.643 50.000 0.00 0.00 39.07 4.02
556 557 2.372264 CTGCTGACTTGGCATAATGGT 58.628 47.619 0.00 0.00 39.07 3.55
557 558 1.066605 GCTGCTGACTTGGCATAATGG 59.933 52.381 0.00 0.00 39.07 3.16
558 559 1.746787 TGCTGCTGACTTGGCATAATG 59.253 47.619 0.00 0.00 39.07 1.90
559 560 2.022195 CTGCTGCTGACTTGGCATAAT 58.978 47.619 0.00 0.00 39.07 1.28
560 561 1.003464 TCTGCTGCTGACTTGGCATAA 59.997 47.619 5.03 0.00 39.07 1.90
561 562 0.614812 TCTGCTGCTGACTTGGCATA 59.385 50.000 5.03 0.00 39.07 3.14
562 563 0.251033 TTCTGCTGCTGACTTGGCAT 60.251 50.000 8.84 0.00 39.07 4.40
563 564 0.466007 TTTCTGCTGCTGACTTGGCA 60.466 50.000 8.84 0.00 38.10 4.92
564 565 0.670162 TTTTCTGCTGCTGACTTGGC 59.330 50.000 8.84 0.00 0.00 4.52
582 583 2.032030 CCGCAGTTGACGTCATCTTTTT 60.032 45.455 23.30 3.66 0.00 1.94
583 584 1.531149 CCGCAGTTGACGTCATCTTTT 59.469 47.619 23.30 3.99 0.00 2.27
584 585 1.148310 CCGCAGTTGACGTCATCTTT 58.852 50.000 23.30 4.68 0.00 2.52
585 586 0.317160 TCCGCAGTTGACGTCATCTT 59.683 50.000 23.30 8.52 0.00 2.40
586 587 0.109086 CTCCGCAGTTGACGTCATCT 60.109 55.000 20.80 20.81 0.00 2.90
587 588 1.078759 CCTCCGCAGTTGACGTCATC 61.079 60.000 20.80 18.71 0.00 2.92
588 589 1.079819 CCTCCGCAGTTGACGTCAT 60.080 57.895 20.80 1.65 0.00 3.06
589 590 1.174078 TACCTCCGCAGTTGACGTCA 61.174 55.000 15.76 15.76 0.00 4.35
590 591 0.456312 CTACCTCCGCAGTTGACGTC 60.456 60.000 9.11 9.11 0.00 4.34
591 592 1.177256 ACTACCTCCGCAGTTGACGT 61.177 55.000 0.00 0.00 0.00 4.34
592 593 0.038526 AACTACCTCCGCAGTTGACG 60.039 55.000 0.00 0.00 33.78 4.35
593 594 2.029649 TGTAACTACCTCCGCAGTTGAC 60.030 50.000 0.00 0.00 35.79 3.18
594 595 2.029649 GTGTAACTACCTCCGCAGTTGA 60.030 50.000 0.00 0.00 35.79 3.18
595 596 2.288579 TGTGTAACTACCTCCGCAGTTG 60.289 50.000 0.00 0.00 38.04 3.16
596 597 1.965643 TGTGTAACTACCTCCGCAGTT 59.034 47.619 0.00 0.00 38.04 3.16
597 598 1.624336 TGTGTAACTACCTCCGCAGT 58.376 50.000 0.00 0.00 38.04 4.40
598 599 2.334838 GTTGTGTAACTACCTCCGCAG 58.665 52.381 0.00 0.00 36.56 5.18
599 600 2.443887 GTTGTGTAACTACCTCCGCA 57.556 50.000 0.00 0.00 36.56 5.69
606 607 2.995939 GGCGGTAAGGTTGTGTAACTAC 59.004 50.000 0.00 0.00 41.93 2.73
607 608 2.632028 TGGCGGTAAGGTTGTGTAACTA 59.368 45.455 0.00 0.00 38.04 2.24
608 609 1.417145 TGGCGGTAAGGTTGTGTAACT 59.583 47.619 0.00 0.00 38.04 2.24
613 614 0.536460 AGGTTGGCGGTAAGGTTGTG 60.536 55.000 0.00 0.00 0.00 3.33
620 621 2.652095 CCGAGGAGGTTGGCGGTAA 61.652 63.158 0.00 0.00 38.99 2.85
636 637 0.669318 TGACTCTTTTGCTACCGCCG 60.669 55.000 0.00 0.00 34.43 6.46
660 662 7.012421 CCCCGGTTTCAAAATAACAAAAATTGA 59.988 33.333 0.00 0.00 0.00 2.57
661 663 7.135467 CCCCGGTTTCAAAATAACAAAAATTG 58.865 34.615 0.00 0.00 0.00 2.32
662 664 6.829298 ACCCCGGTTTCAAAATAACAAAAATT 59.171 30.769 0.00 0.00 0.00 1.82
664 666 5.742063 ACCCCGGTTTCAAAATAACAAAAA 58.258 33.333 0.00 0.00 0.00 1.94
669 671 5.963176 TCTAACCCCGGTTTCAAAATAAC 57.037 39.130 4.08 0.00 39.31 1.89
683 685 0.179054 GTTCAGCCGGATCTAACCCC 60.179 60.000 5.05 0.00 0.00 4.95
869 878 5.058149 TCGGCAAAGTTCTATGTTACGTA 57.942 39.130 0.00 0.00 0.00 3.57
908 918 0.254178 AGCGCACTTGGATGGAATCT 59.746 50.000 11.47 0.00 44.71 2.40
978 988 2.158755 CCCAGTCTCTCTCTCTCTCTCC 60.159 59.091 0.00 0.00 0.00 3.71
979 989 2.771943 TCCCAGTCTCTCTCTCTCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
998 1008 3.386402 TGGATTTGGGTTTGTTTCTGTCC 59.614 43.478 0.00 0.00 0.00 4.02
999 1009 4.501400 CCTGGATTTGGGTTTGTTTCTGTC 60.501 45.833 0.00 0.00 0.00 3.51
1039 1049 4.660938 GGGGCAGAAGGGCGTGTT 62.661 66.667 0.00 0.00 44.56 3.32
1057 1067 0.985490 CCCCAGGGAGGAAGAAGAGG 60.985 65.000 7.25 0.00 41.22 3.69
1058 1068 2.614001 CCCCAGGGAGGAAGAAGAG 58.386 63.158 7.25 0.00 41.22 2.85
1059 1069 4.919770 CCCCAGGGAGGAAGAAGA 57.080 61.111 7.25 0.00 41.22 2.87
1071 1081 1.303317 CCGTGGAAGAAACCCCCAG 60.303 63.158 0.00 0.00 0.00 4.45
1327 1341 0.394762 AATCAGGCATGGCATCGTGT 60.395 50.000 22.64 0.00 32.65 4.49
1529 1543 2.032681 GTGGGCTTCTTGGAGCGT 59.967 61.111 0.00 0.00 43.62 5.07
1742 1756 3.454858 AGGATCTTTGGAGTGGCTCTTA 58.545 45.455 0.00 0.00 0.00 2.10
1807 1821 1.392710 CCTTGATCTCCGTACCCGCT 61.393 60.000 0.00 0.00 0.00 5.52
1888 1908 1.389609 CGCCCTCCGCTTCCTACTTA 61.390 60.000 0.00 0.00 34.21 2.24
1915 1947 3.106827 TCCCTACTTGCATCATGTCTCA 58.893 45.455 0.00 0.00 0.00 3.27
2009 2041 2.434185 GCAACCGCGTCCTCATCA 60.434 61.111 4.92 0.00 0.00 3.07
2266 2298 7.214467 TCAGGAAATTTTGTGACAGTATTCC 57.786 36.000 11.24 11.24 36.25 3.01
2329 2361 1.145738 AGTGGCCAACTCCAAGATTGT 59.854 47.619 7.24 0.00 37.96 2.71
2390 2422 2.155279 GTTTCCTGCTTCCAAGGACTC 58.845 52.381 0.00 0.00 0.00 3.36
2441 2473 1.407437 CCACAAGTATCACCAGCCTCC 60.407 57.143 0.00 0.00 0.00 4.30
2572 2604 4.497006 GCTTTATACTACCAGAACTCGCGA 60.497 45.833 9.26 9.26 0.00 5.87
2626 2658 0.111061 TCTGGGTCTTGCTTGCACAT 59.889 50.000 0.00 0.00 0.00 3.21
2719 2751 1.202394 CGACAGAGGCAGGATTCTCAG 60.202 57.143 0.00 0.00 32.76 3.35
3145 3179 3.056393 AGACAACGGGATTAATGACGACA 60.056 43.478 13.46 0.00 0.00 4.35
3184 4305 9.515226 AAGAACAAAATACAGTTTATCCAGCTA 57.485 29.630 0.00 0.00 0.00 3.32
3185 4306 8.299570 CAAGAACAAAATACAGTTTATCCAGCT 58.700 33.333 0.00 0.00 0.00 4.24
3312 4434 1.446907 CCATCACAGCTTCTGTCCAC 58.553 55.000 0.00 0.00 43.43 4.02
3367 4491 5.340803 TCAGCTCAACAACGATGTATAGTC 58.659 41.667 0.00 0.00 39.40 2.59
3405 4552 5.120674 GGATAAAGTTCATTTGGCAAAGCAC 59.879 40.000 18.61 13.52 32.01 4.40
3447 4594 7.933033 ACAAGAATCCAAGTGCATGTAAAAATT 59.067 29.630 0.00 0.00 0.00 1.82
3581 4782 3.686016 ACGGCACATAAATCTCCAAACT 58.314 40.909 0.00 0.00 0.00 2.66
3600 4801 3.454042 TCATCATTTCGAACTGCAACG 57.546 42.857 10.43 0.00 0.00 4.10
3621 6561 9.246670 TGATCAACTCCAAATAAACAATGATCT 57.753 29.630 11.72 0.00 40.60 2.75
3622 6562 9.294030 GTGATCAACTCCAAATAAACAATGATC 57.706 33.333 0.00 0.00 40.46 2.92
3623 6563 8.253113 GGTGATCAACTCCAAATAAACAATGAT 58.747 33.333 2.64 0.00 32.94 2.45
3680 6620 6.353602 GGAAAAGGTCAAGATAGGAACCCATA 60.354 42.308 0.00 0.00 0.00 2.74
3705 6645 8.090214 ACTGAATAAATGAACCAATGTGGAAAG 58.910 33.333 0.18 0.00 40.96 2.62
3758 6708 1.671901 GGAGGTTCTCTCGCCCTCAG 61.672 65.000 7.19 0.00 45.42 3.35
3765 6715 5.068460 ACAGATTTCTATGGAGGTTCTCTCG 59.932 44.000 0.00 0.00 43.34 4.04
3793 6744 0.533755 ATTCTACAGCCGCATCTGCC 60.534 55.000 2.44 0.00 37.59 4.85
3835 6787 4.759782 ACGCAAAGCTGAGTTATATCTGT 58.240 39.130 0.00 0.00 30.51 3.41
3836 6788 4.805719 TGACGCAAAGCTGAGTTATATCTG 59.194 41.667 0.00 0.00 35.51 2.90
3845 6799 3.451526 TCAGATATGACGCAAAGCTGAG 58.548 45.455 0.00 0.00 0.00 3.35
3948 7090 2.679639 CGCCTTGCCTAATCTGTTACCA 60.680 50.000 0.00 0.00 0.00 3.25
4267 7417 4.451150 GATGCTGGGACGACCGCA 62.451 66.667 8.66 8.66 46.97 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.