Multiple sequence alignment - TraesCS2D01G263200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G263200 chr2D 100.000 8667 0 0 1 8667 320498561 320489895 0.000000e+00 16006
1 TraesCS2D01G263200 chr2A 96.313 3119 78 11 2234 5324 410688290 410691399 0.000000e+00 5088
2 TraesCS2D01G263200 chr2A 94.745 3083 92 30 5369 8406 410691668 410694725 0.000000e+00 4732
3 TraesCS2D01G263200 chr2A 96.697 1514 23 9 732 2238 410686753 410688246 0.000000e+00 2494
4 TraesCS2D01G263200 chr2A 90.637 267 24 1 8401 8667 752082814 752082549 3.850000e-93 353
5 TraesCS2D01G263200 chr2A 84.746 118 15 1 483 600 410609990 410610104 1.980000e-21 115
6 TraesCS2D01G263200 chr2B 95.902 2684 62 10 3145 5808 388949860 388947205 0.000000e+00 4303
7 TraesCS2D01G263200 chr2B 94.175 2472 74 35 5790 8219 388947140 388944697 0.000000e+00 3703
8 TraesCS2D01G263200 chr2B 95.779 1753 62 6 487 2238 388952524 388950783 0.000000e+00 2817
9 TraesCS2D01G263200 chr2B 96.742 890 28 1 2234 3123 388950739 388949851 0.000000e+00 1482
10 TraesCS2D01G263200 chr2B 90.306 196 15 2 8211 8406 388944313 388944122 4.020000e-63 254
11 TraesCS2D01G263200 chr3A 86.299 489 57 9 8 487 604468751 604468264 2.770000e-144 523
12 TraesCS2D01G263200 chr7A 86.242 487 58 8 8 488 396812142 396812625 3.590000e-143 520
13 TraesCS2D01G263200 chr7A 86.037 487 59 8 8 488 396813835 396814318 1.670000e-141 514
14 TraesCS2D01G263200 chr7A 85.216 487 63 8 8 488 396815529 396816012 7.820000e-135 492
15 TraesCS2D01G263200 chr7A 85.216 487 63 9 8 488 396817224 396817707 7.820000e-135 492
16 TraesCS2D01G263200 chr7A 85.010 487 64 8 8 488 396810447 396810930 3.640000e-133 486
17 TraesCS2D01G263200 chr7A 84.805 487 65 8 8 488 396808753 396809236 1.690000e-131 481
18 TraesCS2D01G263200 chr7A 84.867 489 60 12 8 487 396820609 396821092 1.690000e-131 481
19 TraesCS2D01G263200 chr7A 84.394 487 67 8 8 488 396818919 396819402 3.660000e-128 470
20 TraesCS2D01G263200 chr3B 92.135 267 21 0 8401 8667 473713334 473713068 2.280000e-100 377


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G263200 chr2D 320489895 320498561 8666 True 16006.000000 16006 100.000000 1 8667 1 chr2D.!!$R1 8666
1 TraesCS2D01G263200 chr2A 410686753 410694725 7972 False 4104.666667 5088 95.918333 732 8406 3 chr2A.!!$F2 7674
2 TraesCS2D01G263200 chr2B 388944122 388952524 8402 True 2511.800000 4303 94.580800 487 8406 5 chr2B.!!$R1 7919
3 TraesCS2D01G263200 chr7A 396808753 396821092 12339 False 492.000000 520 85.223375 8 488 8 chr7A.!!$F1 480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 5410 0.931702 TGTTTTGTGCGTGAGTACCG 59.068 50.000 0.00 0.0 46.80 4.02 F
355 5442 1.062148 GGTTTTCTCGTATTGAGCCGC 59.938 52.381 0.00 0.0 44.86 6.53 F
627 12489 1.146041 GGCCTATCATGGTCGTGCA 59.854 57.895 0.00 0.0 0.00 4.57 F
1694 13557 1.663643 TGCGTCGACATTGATTAAGCC 59.336 47.619 17.16 0.0 0.00 4.35 F
3042 14960 1.611936 GGGGTGCCTTTCAGTCTCTTC 60.612 57.143 0.00 0.0 0.00 2.87 F
4742 16706 1.803334 TACACGTCCACTTTCCATGC 58.197 50.000 0.00 0.0 0.00 4.06 F
5049 17022 0.327867 TTCCCTCCCTGCTGGATCAT 60.328 55.000 11.88 0.0 44.07 2.45 F
6610 18910 0.320771 GGCTGTGGGTGACTACTGTG 60.321 60.000 0.00 0.0 43.24 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 14204 2.158986 AGGAGCAGGTTCATCTTCATCG 60.159 50.000 0.00 0.00 0.00 3.84 R
2320 14238 7.031372 ACATTGGAATCTTCGTCAATTTCATG 58.969 34.615 0.00 0.00 0.00 3.07 R
2457 14375 7.065563 GCATTATCCTTATCATCCAGTAAGCAG 59.934 40.741 0.00 0.00 0.00 4.24 R
3238 15191 2.053627 CAGAAAAAGGCATGCAACGTC 58.946 47.619 21.36 9.58 0.00 4.34 R
4959 16931 0.613012 GGCTGGGCTGGATTCTGTTT 60.613 55.000 0.00 0.00 0.00 2.83 R
5861 18151 2.554032 ACGGAAAAAGAGGTCAGCAATG 59.446 45.455 0.00 0.00 0.00 2.82 R
7022 19324 0.175760 GTGCTCAATGTCCTCGCCTA 59.824 55.000 0.00 0.00 0.00 3.93 R
8503 21238 0.107214 CAACATCCGTGGGCATACCT 60.107 55.000 0.00 0.00 41.11 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 3460 6.114221 TCTGTCTTTAGTTGTTTCCGTTTG 57.886 37.500 0.00 0.00 0.00 2.93
120 5202 7.139896 TGCGTGTGTTTAATCATTGTTAGAT 57.860 32.000 0.00 0.00 0.00 1.98
126 5208 7.667635 TGTGTTTAATCATTGTTAGATGGGTCA 59.332 33.333 0.00 0.00 0.00 4.02
128 5210 7.888021 TGTTTAATCATTGTTAGATGGGTCAGT 59.112 33.333 0.00 0.00 0.00 3.41
162 5244 5.947228 AAATAGCCATATCACGTTCCATG 57.053 39.130 0.00 0.00 0.00 3.66
169 5251 4.024048 CCATATCACGTTCCATGTAAAGGC 60.024 45.833 0.00 0.00 0.00 4.35
171 5253 3.066291 TCACGTTCCATGTAAAGGCAT 57.934 42.857 0.00 0.00 0.00 4.40
226 5313 9.635404 TGGTAAATACCCATATCAAGTTTTAGG 57.365 33.333 7.14 0.00 45.87 2.69
242 5329 6.370453 AGTTTTAGGGGAAGCTGTCTAAAAA 58.630 36.000 17.50 7.01 40.82 1.94
243 5330 7.010771 AGTTTTAGGGGAAGCTGTCTAAAAAT 58.989 34.615 17.50 15.41 40.82 1.82
246 5333 3.024547 GGGGAAGCTGTCTAAAAATCCC 58.975 50.000 5.86 5.86 43.50 3.85
247 5334 3.309193 GGGGAAGCTGTCTAAAAATCCCT 60.309 47.826 12.86 0.00 43.68 4.20
249 5336 5.506708 GGGAAGCTGTCTAAAAATCCCTAA 58.493 41.667 7.02 0.00 41.48 2.69
250 5337 5.590663 GGGAAGCTGTCTAAAAATCCCTAAG 59.409 44.000 7.02 0.00 41.48 2.18
251 5338 6.181190 GGAAGCTGTCTAAAAATCCCTAAGT 58.819 40.000 0.00 0.00 0.00 2.24
256 5343 7.724061 AGCTGTCTAAAAATCCCTAAGTTTTGA 59.276 33.333 0.00 0.00 0.00 2.69
259 5346 9.635404 TGTCTAAAAATCCCTAAGTTTTGAAGA 57.365 29.630 0.00 0.00 0.00 2.87
266 5353 8.706322 AATCCCTAAGTTTTGAAGAAAGCTTA 57.294 30.769 0.00 0.00 41.36 3.09
268 5355 8.528044 TCCCTAAGTTTTGAAGAAAGCTTAAA 57.472 30.769 0.00 0.00 41.53 1.52
323 5410 0.931702 TGTTTTGTGCGTGAGTACCG 59.068 50.000 0.00 0.00 46.80 4.02
341 5428 1.389106 CCGTCGTCGAGATTGGTTTTC 59.611 52.381 2.98 0.00 39.71 2.29
343 5430 2.341760 CGTCGTCGAGATTGGTTTTCTC 59.658 50.000 0.00 0.00 39.71 2.87
355 5442 1.062148 GGTTTTCTCGTATTGAGCCGC 59.938 52.381 0.00 0.00 44.86 6.53
386 5473 5.712217 AACCATGTATTTCGTGTACATCG 57.288 39.130 0.00 5.16 39.95 3.84
387 5474 4.751060 ACCATGTATTTCGTGTACATCGT 58.249 39.130 14.51 5.21 39.95 3.73
417 7198 2.440409 CAAGAGGTTGCTGCTATTGGT 58.560 47.619 0.00 0.00 0.00 3.67
419 7200 1.352352 AGAGGTTGCTGCTATTGGTGT 59.648 47.619 0.00 0.00 0.00 4.16
453 12315 2.361104 ATCGGGCCGCAACAACAT 60.361 55.556 23.83 4.33 0.00 2.71
455 12317 1.373590 ATCGGGCCGCAACAACATAC 61.374 55.000 23.83 0.00 0.00 2.39
457 12319 1.974343 GGGCCGCAACAACATACCA 60.974 57.895 0.00 0.00 0.00 3.25
462 12324 1.327460 CCGCAACAACATACCAGATCG 59.673 52.381 0.00 0.00 0.00 3.69
463 12325 1.267532 CGCAACAACATACCAGATCGC 60.268 52.381 0.00 0.00 0.00 4.58
465 12327 1.999735 CAACAACATACCAGATCGCGT 59.000 47.619 5.77 0.00 0.00 6.01
466 12328 1.922570 ACAACATACCAGATCGCGTC 58.077 50.000 5.77 2.98 0.00 5.19
482 12344 1.590147 GTCACGAGGTTCGGTCCAT 59.410 57.895 3.37 0.00 45.59 3.41
501 12363 5.591877 GTCCATATCAGCAGTCCAAAAGAAT 59.408 40.000 0.00 0.00 0.00 2.40
535 12397 7.562454 AGACATTGTCCATCATCCATTGTTATT 59.438 33.333 13.14 0.00 32.18 1.40
536 12398 8.765488 ACATTGTCCATCATCCATTGTTATTA 57.235 30.769 0.00 0.00 0.00 0.98
541 12403 8.849168 TGTCCATCATCCATTGTTATTATTGTC 58.151 33.333 0.00 0.00 0.00 3.18
548 12410 6.489603 TCCATTGTTATTATTGTCCAGGTGT 58.510 36.000 0.00 0.00 0.00 4.16
549 12411 7.634718 TCCATTGTTATTATTGTCCAGGTGTA 58.365 34.615 0.00 0.00 0.00 2.90
550 12412 8.278639 TCCATTGTTATTATTGTCCAGGTGTAT 58.721 33.333 0.00 0.00 0.00 2.29
567 12429 7.336931 CCAGGTGTATTACTATAATTCATGCCC 59.663 40.741 0.00 0.00 0.00 5.36
606 12468 5.649395 TGAACTTGATGTCATCCAATCTTCC 59.351 40.000 10.36 0.00 0.00 3.46
607 12469 5.183530 ACTTGATGTCATCCAATCTTCCA 57.816 39.130 10.36 0.00 0.00 3.53
612 12474 2.027385 GTCATCCAATCTTCCAAGGCC 58.973 52.381 0.00 0.00 0.00 5.19
627 12489 1.146041 GGCCTATCATGGTCGTGCA 59.854 57.895 0.00 0.00 0.00 4.57
664 12526 5.771153 TTCATGAACATTTTGTCTGCTCA 57.229 34.783 3.38 0.00 0.00 4.26
665 12527 5.771153 TCATGAACATTTTGTCTGCTCAA 57.229 34.783 0.00 0.00 0.00 3.02
684 12546 7.761409 TGCTCAATATCAAAATAAGCTCGTTT 58.239 30.769 0.00 0.00 0.00 3.60
703 12565 9.582223 GCTCGTTTGCTAGTTATATTTCATTAC 57.418 33.333 0.00 0.00 0.00 1.89
827 12689 3.611766 AATTCTCCGGAAGTCGATTGT 57.388 42.857 5.23 0.00 42.43 2.71
943 12806 1.995991 CGACCCACGCATAAACTCG 59.004 57.895 0.00 0.00 34.51 4.18
1296 13159 1.856259 TGATCTCCCCTGCTCTACTCT 59.144 52.381 0.00 0.00 0.00 3.24
1341 13204 4.149598 GGCTTAGTTTTCTCTTTGGGGAA 58.850 43.478 0.00 0.00 0.00 3.97
1647 13510 8.438676 TTGCTAAAGAGTTAAAGATATGCTCC 57.561 34.615 0.00 0.00 0.00 4.70
1658 13521 9.771534 GTTAAAGATATGCTCCTGTAGATTTCT 57.228 33.333 0.00 0.00 0.00 2.52
1687 13550 3.186909 CCTAATTCTGCGTCGACATTGA 58.813 45.455 17.16 6.82 0.00 2.57
1694 13557 1.663643 TGCGTCGACATTGATTAAGCC 59.336 47.619 17.16 0.00 0.00 4.35
2234 14104 7.604657 TTCTTCTCTTATGTAGATCCTTCCC 57.395 40.000 0.00 0.00 30.92 3.97
2286 14204 2.095853 CCGTGATGTGTTTGGTGATAGC 59.904 50.000 0.00 0.00 0.00 2.97
2320 14238 1.968540 GCTCCTTATCATGCCCCGC 60.969 63.158 0.00 0.00 0.00 6.13
2374 14292 9.288576 GATTCAAATCCCAAATTCTTCCTTTTT 57.711 29.630 0.00 0.00 0.00 1.94
2502 14420 3.587923 TGCGGTACATGTTAGTGTAACC 58.412 45.455 2.30 2.22 38.72 2.85
2791 14709 5.454045 CCCTTATTCTCTTCTTCTGTAGCCC 60.454 48.000 0.00 0.00 0.00 5.19
2881 14799 4.143242 CGATATGATTCAGATGACAACCGC 60.143 45.833 0.00 0.00 0.00 5.68
2977 14895 2.963782 ACCGGACAGAGTGAGTTAACTT 59.036 45.455 9.46 0.00 0.00 2.66
3042 14960 1.611936 GGGGTGCCTTTCAGTCTCTTC 60.612 57.143 0.00 0.00 0.00 2.87
3116 15034 8.991243 ATCATTTGATGGTTGATTACTGTTTG 57.009 30.769 0.00 0.00 32.68 2.93
3117 15035 8.175925 TCATTTGATGGTTGATTACTGTTTGA 57.824 30.769 0.00 0.00 0.00 2.69
3118 15036 8.637099 TCATTTGATGGTTGATTACTGTTTGAA 58.363 29.630 0.00 0.00 0.00 2.69
3119 15037 9.258826 CATTTGATGGTTGATTACTGTTTGAAA 57.741 29.630 0.00 0.00 0.00 2.69
3121 15039 9.474920 TTTGATGGTTGATTACTGTTTGAAATC 57.525 29.630 0.00 0.00 0.00 2.17
3122 15040 8.408043 TGATGGTTGATTACTGTTTGAAATCT 57.592 30.769 3.50 0.00 32.12 2.40
3123 15041 8.298854 TGATGGTTGATTACTGTTTGAAATCTG 58.701 33.333 3.50 0.00 32.12 2.90
3124 15042 7.581213 TGGTTGATTACTGTTTGAAATCTGT 57.419 32.000 3.50 0.00 32.12 3.41
3125 15043 8.684386 TGGTTGATTACTGTTTGAAATCTGTA 57.316 30.769 3.50 0.00 32.12 2.74
3126 15044 8.783093 TGGTTGATTACTGTTTGAAATCTGTAG 58.217 33.333 3.50 0.00 32.12 2.74
3127 15045 8.999431 GGTTGATTACTGTTTGAAATCTGTAGA 58.001 33.333 3.50 0.00 32.12 2.59
3128 15046 9.813080 GTTGATTACTGTTTGAAATCTGTAGAC 57.187 33.333 3.50 0.00 32.12 2.59
3129 15047 9.554395 TTGATTACTGTTTGAAATCTGTAGACA 57.446 29.630 3.50 0.00 32.12 3.41
3130 15048 9.554395 TGATTACTGTTTGAAATCTGTAGACAA 57.446 29.630 3.50 0.00 32.12 3.18
3131 15049 9.813080 GATTACTGTTTGAAATCTGTAGACAAC 57.187 33.333 0.00 0.00 0.00 3.32
3132 15050 8.725405 TTACTGTTTGAAATCTGTAGACAACA 57.275 30.769 0.00 0.00 36.42 3.33
3142 15060 3.386768 TGTAGACAACAGTCTCTTGGC 57.613 47.619 0.79 0.00 41.54 4.52
3143 15061 2.965831 TGTAGACAACAGTCTCTTGGCT 59.034 45.455 1.51 1.51 41.54 4.75
3155 15104 5.407995 CAGTCTCTTGGCTTTTGAAGTCTAG 59.592 44.000 0.00 0.00 37.32 2.43
3217 15166 7.557719 TCTTAAGCTCAGCCTATTTGCTTTATT 59.442 33.333 0.00 0.00 42.81 1.40
3218 15167 5.511234 AGCTCAGCCTATTTGCTTTATTG 57.489 39.130 0.00 0.00 40.32 1.90
3826 15779 5.011090 GATGGCACTACATCAGTAAGTGA 57.989 43.478 5.91 0.00 45.11 3.41
3942 15895 4.471025 TCTCTCCTTGAAGTTGATATGGCA 59.529 41.667 0.00 0.00 0.00 4.92
3943 15896 5.131642 TCTCTCCTTGAAGTTGATATGGCAT 59.868 40.000 4.88 4.88 0.00 4.40
3966 15919 9.757227 GCATATTCCTATCTAGATTATGTCACC 57.243 37.037 11.25 0.00 33.30 4.02
4371 16335 8.661752 TCATCTATACTCTCAACATCATCCAT 57.338 34.615 0.00 0.00 0.00 3.41
4388 16352 6.662755 TCATCCATAATAAGTTTCACTGGCT 58.337 36.000 0.00 0.00 0.00 4.75
4515 16479 4.965119 ATTAACCGCTCTTGTTGATTCC 57.035 40.909 0.00 0.00 0.00 3.01
4521 16485 2.160417 CGCTCTTGTTGATTCCCAGAAC 59.840 50.000 0.00 0.00 0.00 3.01
4599 16563 4.542697 AGCAGGAAAAAGAAAGGGTAACA 58.457 39.130 0.00 0.00 39.74 2.41
4620 16584 5.258051 ACAAAAACTCCACTGTTTAGTCCA 58.742 37.500 0.00 0.00 38.98 4.02
4742 16706 1.803334 TACACGTCCACTTTCCATGC 58.197 50.000 0.00 0.00 0.00 4.06
4980 16952 2.614969 AGAATCCAGCCCAGCCCA 60.615 61.111 0.00 0.00 0.00 5.36
5049 17022 0.327867 TTCCCTCCCTGCTGGATCAT 60.328 55.000 11.88 0.00 44.07 2.45
5058 17031 1.211212 CTGCTGGATCATGGGACTTGA 59.789 52.381 0.00 0.00 0.00 3.02
5061 17034 2.158711 GCTGGATCATGGGACTTGATGA 60.159 50.000 0.00 0.00 34.03 2.92
5152 17127 5.591067 TCCGACAGTTTTATTTGTGTTTCCT 59.409 36.000 0.00 0.00 0.00 3.36
5166 17141 5.497474 TGTGTTTCCTCTTTTCTATAGCCC 58.503 41.667 0.00 0.00 0.00 5.19
5173 17148 4.811557 CCTCTTTTCTATAGCCCTGAAACG 59.188 45.833 0.00 0.00 30.66 3.60
5210 17186 8.062065 AGTTCTAAGATCAGAAACCTGTAGAG 57.938 38.462 0.00 0.00 36.34 2.43
5277 17255 2.162208 GCTTTCATGAATCCGTTGCAGA 59.838 45.455 9.40 0.00 0.00 4.26
5278 17256 3.366273 GCTTTCATGAATCCGTTGCAGAA 60.366 43.478 9.40 0.00 0.00 3.02
5279 17257 4.409570 CTTTCATGAATCCGTTGCAGAAG 58.590 43.478 9.40 0.00 0.00 2.85
5361 17339 3.509967 CCCCCACTTATTTTGGTCTGAAC 59.490 47.826 0.00 0.00 31.46 3.18
5410 17612 9.303116 ACACATAAGTCAACATTAATAAACCCA 57.697 29.630 0.00 0.00 0.00 4.51
5515 17722 6.296435 ACTGATCTAAGGGTAGGGTCTAAT 57.704 41.667 0.00 0.00 0.00 1.73
5528 17735 8.001292 GGGTAGGGTCTAATAGTTCTTGTACTA 58.999 40.741 0.00 0.00 35.25 1.82
5613 17820 3.576078 TGGAAACCGATGAATATGGCT 57.424 42.857 0.00 0.00 0.00 4.75
5855 18145 6.012745 GTCCCATTCTGGAGGCATATTAATT 58.987 40.000 0.00 0.00 40.96 1.40
5861 18151 6.942532 TCTGGAGGCATATTAATTGTGTTC 57.057 37.500 0.00 0.00 0.00 3.18
6106 18396 1.384525 TGAGGTGGGTTGTTGTTTCG 58.615 50.000 0.00 0.00 0.00 3.46
6340 18632 7.403837 ACTCTAGGTCATACTATGGGAAGTA 57.596 40.000 0.00 0.00 36.44 2.24
6388 18684 4.020485 TGCTTCCCTAGTTTACTCCAACTC 60.020 45.833 0.00 0.00 38.07 3.01
6451 18747 9.503399 CCTAGGTGGGTAATTTTATTCTGATAC 57.497 37.037 0.00 0.00 0.00 2.24
6609 18909 1.481056 GGGCTGTGGGTGACTACTGT 61.481 60.000 0.00 0.00 43.24 3.55
6610 18910 0.320771 GGCTGTGGGTGACTACTGTG 60.321 60.000 0.00 0.00 43.24 3.66
6611 18911 0.393077 GCTGTGGGTGACTACTGTGT 59.607 55.000 0.00 0.00 43.24 3.72
6768 19070 0.460109 CGAATGGCATCTCGTGGTCA 60.460 55.000 17.88 0.00 0.00 4.02
6945 19247 1.597027 AGGTGTTCCTCGCAAACCG 60.597 57.895 0.00 0.00 40.58 4.44
7021 19323 4.468153 GGGAGGAGTCAGAGTATGAAACTT 59.532 45.833 0.00 0.00 40.43 2.66
7022 19324 5.046231 GGGAGGAGTCAGAGTATGAAACTTT 60.046 44.000 0.00 0.00 40.43 2.66
7044 19346 0.108424 GCGAGGACATTGAGCACTCT 60.108 55.000 0.00 0.00 0.00 3.24
7149 19451 1.202976 AGATGCCACTGCCTCAAACTT 60.203 47.619 0.00 0.00 34.88 2.66
7164 19467 7.039270 GCCTCAAACTTCAGTTTTCCTTTTAA 58.961 34.615 2.01 0.00 45.07 1.52
7165 19468 7.222805 GCCTCAAACTTCAGTTTTCCTTTTAAG 59.777 37.037 2.01 0.00 45.07 1.85
7174 19477 9.470399 TTCAGTTTTCCTTTTAAGAAGTAGGTT 57.530 29.630 0.00 0.00 0.00 3.50
7310 19613 4.036498 ACTCTGACATTAGGAATACGGTCG 59.964 45.833 0.00 0.00 0.00 4.79
7352 19655 9.751542 ATTTTAGATGTCGGACTTTGTAGATAG 57.248 33.333 9.88 0.00 0.00 2.08
7374 19677 2.715532 TTCTTTCGCTCTGCTGCCGT 62.716 55.000 0.00 0.00 0.00 5.68
7509 19814 4.846779 TGTTAATCAAACTGGAACTGGC 57.153 40.909 0.00 0.00 38.99 4.85
7549 19854 0.114168 AGAGAGAGTCAGCAGTGGGT 59.886 55.000 0.00 0.00 0.00 4.51
7660 19965 2.060326 TTGAAAGCGACGACGAAGAT 57.940 45.000 12.29 0.00 42.66 2.40
7684 19989 6.702329 TGAGTGAAGGAGGAGAAAATAGAAC 58.298 40.000 0.00 0.00 0.00 3.01
7690 19995 4.468153 AGGAGGAGAAAATAGAACTTCGCT 59.532 41.667 0.00 0.00 0.00 4.93
7793 20103 4.552166 AAAAGATGTCAGTTGTCCGTTG 57.448 40.909 0.00 0.00 0.00 4.10
7824 20134 3.119955 CCAAGTGCAGATCATGAACAGTG 60.120 47.826 0.00 0.00 40.38 3.66
7920 20230 7.306109 GCAAAAATTTGTGGCAAAATGACATTC 60.306 33.333 10.38 0.00 37.93 2.67
7924 20234 2.253603 GTGGCAAAATGACATTCGAGC 58.746 47.619 0.05 6.08 37.93 5.03
7925 20235 2.095059 GTGGCAAAATGACATTCGAGCT 60.095 45.455 14.93 0.00 37.93 4.09
7926 20236 2.162208 TGGCAAAATGACATTCGAGCTC 59.838 45.455 2.73 2.73 24.43 4.09
7927 20237 2.421424 GGCAAAATGACATTCGAGCTCT 59.579 45.455 12.85 0.00 0.00 4.09
7929 20239 3.850273 GCAAAATGACATTCGAGCTCTTG 59.150 43.478 12.85 9.19 0.00 3.02
7930 20240 4.378770 GCAAAATGACATTCGAGCTCTTGA 60.379 41.667 12.85 0.00 0.00 3.02
7931 20241 5.322310 CAAAATGACATTCGAGCTCTTGAG 58.678 41.667 12.85 1.88 0.00 3.02
7932 20242 4.462508 AATGACATTCGAGCTCTTGAGA 57.537 40.909 12.85 0.00 0.00 3.27
7933 20243 3.500558 TGACATTCGAGCTCTTGAGAG 57.499 47.619 12.85 3.63 44.75 3.20
8010 20325 4.487714 TGTCAAGACTTCCTTCAGTGTT 57.512 40.909 1.53 0.00 30.52 3.32
8033 20371 8.259411 TGTTATTTTGCCATGATAAGCATCTTT 58.741 29.630 0.00 0.00 39.11 2.52
8055 20393 8.081025 TCTTTTATGCCAAAAATTGCCATTTTC 58.919 29.630 8.78 0.00 41.02 2.29
8059 20397 5.589192 TGCCAAAAATTGCCATTTTCTTTG 58.411 33.333 8.78 4.53 41.02 2.77
8076 20417 8.795786 TTTTCTTTGAATTTACTGTTCATCCG 57.204 30.769 0.00 0.00 35.68 4.18
8137 20480 6.530019 AAAGAAGCAGTTTTTCCTTCTGAA 57.470 33.333 3.22 0.00 43.15 3.02
8138 20481 6.721704 AAGAAGCAGTTTTTCCTTCTGAAT 57.278 33.333 3.22 0.00 43.15 2.57
8139 20482 6.721704 AGAAGCAGTTTTTCCTTCTGAATT 57.278 33.333 1.70 0.00 42.56 2.17
8140 20483 7.117285 AGAAGCAGTTTTTCCTTCTGAATTT 57.883 32.000 1.70 0.00 42.56 1.82
8263 20998 8.290277 AGTACTCCTATATATATTGTCAGGGGG 58.710 40.741 12.06 7.42 0.00 5.40
8265 21000 5.224441 TCCTATATATATTGTCAGGGGGCC 58.776 45.833 0.00 0.00 0.00 5.80
8406 21141 6.765915 ATGCCTGGATAAAAGAAAGAAGTC 57.234 37.500 0.00 0.00 0.00 3.01
8407 21142 4.695455 TGCCTGGATAAAAGAAAGAAGTCG 59.305 41.667 0.00 0.00 0.00 4.18
8408 21143 4.695928 GCCTGGATAAAAGAAAGAAGTCGT 59.304 41.667 0.00 0.00 0.00 4.34
8409 21144 5.163844 GCCTGGATAAAAGAAAGAAGTCGTC 60.164 44.000 0.00 0.00 0.00 4.20
8410 21145 6.166982 CCTGGATAAAAGAAAGAAGTCGTCT 58.833 40.000 0.00 0.00 38.69 4.18
8411 21146 7.321153 CCTGGATAAAAGAAAGAAGTCGTCTA 58.679 38.462 0.00 0.00 34.56 2.59
8412 21147 7.982354 CCTGGATAAAAGAAAGAAGTCGTCTAT 59.018 37.037 0.00 0.00 34.56 1.98
8426 21161 9.915629 AGAAGTCGTCTATATATTTTAGCAAGG 57.084 33.333 0.00 0.00 33.56 3.61
8427 21162 9.141400 GAAGTCGTCTATATATTTTAGCAAGGG 57.859 37.037 0.00 0.00 0.00 3.95
8428 21163 7.612677 AGTCGTCTATATATTTTAGCAAGGGG 58.387 38.462 0.00 0.00 0.00 4.79
8429 21164 7.234988 AGTCGTCTATATATTTTAGCAAGGGGT 59.765 37.037 0.00 0.00 0.00 4.95
8430 21165 7.331193 GTCGTCTATATATTTTAGCAAGGGGTG 59.669 40.741 0.00 0.00 0.00 4.61
8443 21178 4.329545 GGGTGCCCGCAACAGAGA 62.330 66.667 7.10 0.00 34.85 3.10
8444 21179 2.281484 GGTGCCCGCAACAGAGAA 60.281 61.111 0.00 0.00 33.07 2.87
8445 21180 2.328099 GGTGCCCGCAACAGAGAAG 61.328 63.158 0.00 0.00 33.07 2.85
8446 21181 2.032528 TGCCCGCAACAGAGAAGG 59.967 61.111 0.00 0.00 0.00 3.46
8447 21182 2.747855 GCCCGCAACAGAGAAGGG 60.748 66.667 0.00 0.00 44.72 3.95
8448 21183 3.068881 CCCGCAACAGAGAAGGGA 58.931 61.111 0.00 0.00 44.70 4.20
8449 21184 1.604378 CCCGCAACAGAGAAGGGAT 59.396 57.895 0.00 0.00 44.70 3.85
8450 21185 0.830648 CCCGCAACAGAGAAGGGATA 59.169 55.000 0.00 0.00 44.70 2.59
8451 21186 1.202580 CCCGCAACAGAGAAGGGATAG 60.203 57.143 0.00 0.00 44.70 2.08
8452 21187 1.482593 CCGCAACAGAGAAGGGATAGT 59.517 52.381 0.00 0.00 0.00 2.12
8453 21188 2.693591 CCGCAACAGAGAAGGGATAGTA 59.306 50.000 0.00 0.00 0.00 1.82
8454 21189 3.322254 CCGCAACAGAGAAGGGATAGTAT 59.678 47.826 0.00 0.00 0.00 2.12
8455 21190 4.523173 CCGCAACAGAGAAGGGATAGTATA 59.477 45.833 0.00 0.00 0.00 1.47
8456 21191 5.010719 CCGCAACAGAGAAGGGATAGTATAA 59.989 44.000 0.00 0.00 0.00 0.98
8457 21192 6.462487 CCGCAACAGAGAAGGGATAGTATAAA 60.462 42.308 0.00 0.00 0.00 1.40
8458 21193 6.984474 CGCAACAGAGAAGGGATAGTATAAAA 59.016 38.462 0.00 0.00 0.00 1.52
8459 21194 7.494625 CGCAACAGAGAAGGGATAGTATAAAAA 59.505 37.037 0.00 0.00 0.00 1.94
8487 21222 7.728847 TTATGCATGTTCATAATAAGTCGCT 57.271 32.000 10.16 0.00 34.89 4.93
8488 21223 8.825667 TTATGCATGTTCATAATAAGTCGCTA 57.174 30.769 10.16 0.00 34.89 4.26
8489 21224 7.728847 ATGCATGTTCATAATAAGTCGCTAA 57.271 32.000 0.00 0.00 0.00 3.09
8490 21225 7.177498 TGCATGTTCATAATAAGTCGCTAAG 57.823 36.000 0.00 0.00 0.00 2.18
8491 21226 6.761242 TGCATGTTCATAATAAGTCGCTAAGT 59.239 34.615 0.00 0.00 0.00 2.24
8492 21227 7.065894 GCATGTTCATAATAAGTCGCTAAGTG 58.934 38.462 0.00 0.00 0.00 3.16
8493 21228 7.042725 GCATGTTCATAATAAGTCGCTAAGTGA 60.043 37.037 0.00 0.00 0.00 3.41
8494 21229 7.751047 TGTTCATAATAAGTCGCTAAGTGAC 57.249 36.000 0.00 0.00 42.60 3.67
8495 21230 7.317390 TGTTCATAATAAGTCGCTAAGTGACA 58.683 34.615 9.66 0.00 44.42 3.58
8496 21231 7.488150 TGTTCATAATAAGTCGCTAAGTGACAG 59.512 37.037 9.66 0.00 44.42 3.51
8497 21232 7.329588 TCATAATAAGTCGCTAAGTGACAGA 57.670 36.000 9.66 0.00 44.42 3.41
8498 21233 7.941919 TCATAATAAGTCGCTAAGTGACAGAT 58.058 34.615 9.66 0.24 44.42 2.90
8499 21234 9.063615 TCATAATAAGTCGCTAAGTGACAGATA 57.936 33.333 9.66 1.26 44.42 1.98
8500 21235 9.119329 CATAATAAGTCGCTAAGTGACAGATAC 57.881 37.037 9.66 0.00 44.42 2.24
8501 21236 6.945938 ATAAGTCGCTAAGTGACAGATACT 57.054 37.500 9.66 0.00 44.42 2.12
8502 21237 5.646577 AAGTCGCTAAGTGACAGATACTT 57.353 39.130 9.66 0.00 44.42 2.24
8503 21238 6.754702 AAGTCGCTAAGTGACAGATACTTA 57.245 37.500 9.66 0.00 44.42 2.24
8511 21246 5.793030 AGTGACAGATACTTAGGTATGCC 57.207 43.478 1.65 0.00 38.60 4.40
8512 21247 4.589374 AGTGACAGATACTTAGGTATGCCC 59.411 45.833 1.65 0.00 38.60 5.36
8513 21248 4.344102 GTGACAGATACTTAGGTATGCCCA 59.656 45.833 1.65 0.00 38.60 5.36
8514 21249 4.344102 TGACAGATACTTAGGTATGCCCAC 59.656 45.833 1.65 0.00 38.60 4.61
8515 21250 3.321111 ACAGATACTTAGGTATGCCCACG 59.679 47.826 1.65 0.00 38.60 4.94
8516 21251 2.897969 AGATACTTAGGTATGCCCACGG 59.102 50.000 1.65 0.00 38.60 4.94
8517 21252 2.457813 TACTTAGGTATGCCCACGGA 57.542 50.000 0.00 0.00 34.66 4.69
8518 21253 1.802553 ACTTAGGTATGCCCACGGAT 58.197 50.000 0.00 0.00 34.66 4.18
8519 21254 1.416401 ACTTAGGTATGCCCACGGATG 59.584 52.381 0.00 0.00 34.66 3.51
8520 21255 1.416401 CTTAGGTATGCCCACGGATGT 59.584 52.381 0.00 0.00 34.66 3.06
8521 21256 1.502690 TAGGTATGCCCACGGATGTT 58.497 50.000 0.00 0.00 34.66 2.71
8522 21257 0.107214 AGGTATGCCCACGGATGTTG 60.107 55.000 0.00 0.00 34.66 3.33
8523 21258 1.101049 GGTATGCCCACGGATGTTGG 61.101 60.000 0.00 0.00 34.03 3.77
8527 21262 2.282816 CCCACGGATGTTGGCCAA 60.283 61.111 16.05 16.05 0.00 4.52
8528 21263 1.682005 CCCACGGATGTTGGCCAAT 60.682 57.895 23.66 6.32 0.00 3.16
8529 21264 1.666209 CCCACGGATGTTGGCCAATC 61.666 60.000 23.66 16.12 0.00 2.67
8530 21265 1.666209 CCACGGATGTTGGCCAATCC 61.666 60.000 23.66 23.43 0.00 3.01
8531 21266 0.964860 CACGGATGTTGGCCAATCCA 60.965 55.000 29.27 21.36 44.85 3.41
8539 21274 3.803123 TGGCCAATCCAAAATGGGA 57.197 47.368 0.61 0.00 43.21 4.37
8540 21275 2.035910 TGGCCAATCCAAAATGGGAA 57.964 45.000 0.61 0.00 43.21 3.97
8541 21276 2.342659 TGGCCAATCCAAAATGGGAAA 58.657 42.857 0.61 0.00 43.21 3.13
8542 21277 2.713167 TGGCCAATCCAAAATGGGAAAA 59.287 40.909 0.61 0.00 43.21 2.29
8543 21278 3.333082 TGGCCAATCCAAAATGGGAAAAT 59.667 39.130 0.61 0.00 43.21 1.82
8544 21279 4.202652 TGGCCAATCCAAAATGGGAAAATT 60.203 37.500 0.61 0.00 43.21 1.82
8545 21280 4.771577 GGCCAATCCAAAATGGGAAAATTT 59.228 37.500 0.00 0.00 41.12 1.82
8546 21281 5.948758 GGCCAATCCAAAATGGGAAAATTTA 59.051 36.000 0.00 0.00 41.12 1.40
8547 21282 6.435591 GGCCAATCCAAAATGGGAAAATTTAA 59.564 34.615 0.00 0.00 41.12 1.52
8548 21283 7.039434 GGCCAATCCAAAATGGGAAAATTTAAA 60.039 33.333 0.00 0.00 41.12 1.52
8549 21284 8.530311 GCCAATCCAAAATGGGAAAATTTAAAT 58.470 29.630 0.00 0.00 41.12 1.40
8559 21294 9.791781 AATGGGAAAATTTAAATACCTAAGGGA 57.208 29.630 0.01 0.00 36.25 4.20
8560 21295 8.598202 TGGGAAAATTTAAATACCTAAGGGAC 57.402 34.615 0.01 0.00 36.25 4.46
8561 21296 8.178132 TGGGAAAATTTAAATACCTAAGGGACA 58.822 33.333 0.01 0.00 36.25 4.02
8562 21297 8.692710 GGGAAAATTTAAATACCTAAGGGACAG 58.307 37.037 0.01 0.00 36.25 3.51
8563 21298 9.470399 GGAAAATTTAAATACCTAAGGGACAGA 57.530 33.333 0.01 0.00 36.25 3.41
8570 21305 6.704056 AATACCTAAGGGACAGAATATGGG 57.296 41.667 0.00 0.00 36.25 4.00
8571 21306 4.295905 ACCTAAGGGACAGAATATGGGA 57.704 45.455 0.00 0.00 36.25 4.37
8572 21307 4.641868 ACCTAAGGGACAGAATATGGGAA 58.358 43.478 0.00 0.00 36.25 3.97
8573 21308 5.043762 ACCTAAGGGACAGAATATGGGAAA 58.956 41.667 0.00 0.00 36.25 3.13
8574 21309 5.494706 ACCTAAGGGACAGAATATGGGAAAA 59.505 40.000 0.00 0.00 36.25 2.29
8575 21310 6.064717 CCTAAGGGACAGAATATGGGAAAAG 58.935 44.000 0.00 0.00 33.58 2.27
8576 21311 5.796502 AAGGGACAGAATATGGGAAAAGA 57.203 39.130 0.00 0.00 0.00 2.52
8577 21312 6.347061 AAGGGACAGAATATGGGAAAAGAT 57.653 37.500 0.00 0.00 0.00 2.40
8578 21313 7.465900 AAGGGACAGAATATGGGAAAAGATA 57.534 36.000 0.00 0.00 0.00 1.98
8579 21314 7.465900 AGGGACAGAATATGGGAAAAGATAA 57.534 36.000 0.00 0.00 0.00 1.75
8580 21315 7.521669 AGGGACAGAATATGGGAAAAGATAAG 58.478 38.462 0.00 0.00 0.00 1.73
8581 21316 7.350921 AGGGACAGAATATGGGAAAAGATAAGA 59.649 37.037 0.00 0.00 0.00 2.10
8582 21317 7.663493 GGGACAGAATATGGGAAAAGATAAGAG 59.337 40.741 0.00 0.00 0.00 2.85
8583 21318 7.663493 GGACAGAATATGGGAAAAGATAAGAGG 59.337 40.741 0.00 0.00 0.00 3.69
8584 21319 8.337118 ACAGAATATGGGAAAAGATAAGAGGA 57.663 34.615 0.00 0.00 0.00 3.71
8585 21320 8.953665 ACAGAATATGGGAAAAGATAAGAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
8586 21321 9.228949 CAGAATATGGGAAAAGATAAGAGGATG 57.771 37.037 0.00 0.00 0.00 3.51
8587 21322 8.389366 AGAATATGGGAAAAGATAAGAGGATGG 58.611 37.037 0.00 0.00 0.00 3.51
8588 21323 7.895144 ATATGGGAAAAGATAAGAGGATGGA 57.105 36.000 0.00 0.00 0.00 3.41
8589 21324 6.793518 ATGGGAAAAGATAAGAGGATGGAT 57.206 37.500 0.00 0.00 0.00 3.41
8590 21325 5.945310 TGGGAAAAGATAAGAGGATGGATG 58.055 41.667 0.00 0.00 0.00 3.51
8591 21326 5.433051 TGGGAAAAGATAAGAGGATGGATGT 59.567 40.000 0.00 0.00 0.00 3.06
8592 21327 6.619437 TGGGAAAAGATAAGAGGATGGATGTA 59.381 38.462 0.00 0.00 0.00 2.29
8593 21328 7.164803 GGGAAAAGATAAGAGGATGGATGTAG 58.835 42.308 0.00 0.00 0.00 2.74
8594 21329 7.016661 GGGAAAAGATAAGAGGATGGATGTAGA 59.983 40.741 0.00 0.00 0.00 2.59
8595 21330 8.432805 GGAAAAGATAAGAGGATGGATGTAGAA 58.567 37.037 0.00 0.00 0.00 2.10
8596 21331 9.487790 GAAAAGATAAGAGGATGGATGTAGAAG 57.512 37.037 0.00 0.00 0.00 2.85
8597 21332 6.603940 AGATAAGAGGATGGATGTAGAAGC 57.396 41.667 0.00 0.00 0.00 3.86
8598 21333 6.322126 AGATAAGAGGATGGATGTAGAAGCT 58.678 40.000 0.00 0.00 0.00 3.74
8599 21334 7.474445 AGATAAGAGGATGGATGTAGAAGCTA 58.526 38.462 0.00 0.00 0.00 3.32
8600 21335 8.121833 AGATAAGAGGATGGATGTAGAAGCTAT 58.878 37.037 0.00 0.00 0.00 2.97
8601 21336 8.677870 ATAAGAGGATGGATGTAGAAGCTATT 57.322 34.615 0.00 0.00 0.00 1.73
8602 21337 9.775539 ATAAGAGGATGGATGTAGAAGCTATTA 57.224 33.333 0.00 0.00 0.00 0.98
8603 21338 8.677870 AAGAGGATGGATGTAGAAGCTATTAT 57.322 34.615 0.00 0.00 0.00 1.28
8604 21339 8.677870 AGAGGATGGATGTAGAAGCTATTATT 57.322 34.615 0.00 0.00 0.00 1.40
8605 21340 9.775539 AGAGGATGGATGTAGAAGCTATTATTA 57.224 33.333 0.00 0.00 0.00 0.98
8618 21353 5.619625 GCTATTATTAGCTGCAGGAAAGG 57.380 43.478 17.12 0.00 46.13 3.11
8619 21354 5.308825 GCTATTATTAGCTGCAGGAAAGGA 58.691 41.667 17.12 0.00 46.13 3.36
8620 21355 5.411053 GCTATTATTAGCTGCAGGAAAGGAG 59.589 44.000 17.12 0.00 46.13 3.69
8621 21356 2.725221 ATTAGCTGCAGGAAAGGAGG 57.275 50.000 17.12 0.00 0.00 4.30
8622 21357 1.362224 TTAGCTGCAGGAAAGGAGGT 58.638 50.000 17.12 0.00 40.77 3.85
8623 21358 0.615331 TAGCTGCAGGAAAGGAGGTG 59.385 55.000 17.12 0.00 38.18 4.00
8624 21359 1.073897 GCTGCAGGAAAGGAGGTGT 59.926 57.895 17.12 0.00 0.00 4.16
8625 21360 0.538287 GCTGCAGGAAAGGAGGTGTT 60.538 55.000 17.12 0.00 0.00 3.32
8626 21361 1.271379 GCTGCAGGAAAGGAGGTGTTA 60.271 52.381 17.12 0.00 0.00 2.41
8627 21362 2.814097 GCTGCAGGAAAGGAGGTGTTAA 60.814 50.000 17.12 0.00 0.00 2.01
8628 21363 3.690460 CTGCAGGAAAGGAGGTGTTAAT 58.310 45.455 5.57 0.00 0.00 1.40
8629 21364 4.843728 CTGCAGGAAAGGAGGTGTTAATA 58.156 43.478 5.57 0.00 0.00 0.98
8630 21365 5.249780 TGCAGGAAAGGAGGTGTTAATAA 57.750 39.130 0.00 0.00 0.00 1.40
8631 21366 5.636123 TGCAGGAAAGGAGGTGTTAATAAA 58.364 37.500 0.00 0.00 0.00 1.40
8632 21367 5.710099 TGCAGGAAAGGAGGTGTTAATAAAG 59.290 40.000 0.00 0.00 0.00 1.85
8633 21368 5.710567 GCAGGAAAGGAGGTGTTAATAAAGT 59.289 40.000 0.00 0.00 0.00 2.66
8634 21369 6.127980 GCAGGAAAGGAGGTGTTAATAAAGTC 60.128 42.308 0.00 0.00 0.00 3.01
8635 21370 6.092259 CAGGAAAGGAGGTGTTAATAAAGTCG 59.908 42.308 0.00 0.00 0.00 4.18
8636 21371 5.353400 GGAAAGGAGGTGTTAATAAAGTCGG 59.647 44.000 0.00 0.00 0.00 4.79
8637 21372 5.494390 AAGGAGGTGTTAATAAAGTCGGT 57.506 39.130 0.00 0.00 0.00 4.69
8638 21373 5.082251 AGGAGGTGTTAATAAAGTCGGTC 57.918 43.478 0.00 0.00 0.00 4.79
8639 21374 3.861689 GGAGGTGTTAATAAAGTCGGTCG 59.138 47.826 0.00 0.00 0.00 4.79
8640 21375 3.256558 AGGTGTTAATAAAGTCGGTCGC 58.743 45.455 0.00 0.00 0.00 5.19
8641 21376 2.349580 GGTGTTAATAAAGTCGGTCGCC 59.650 50.000 0.00 0.00 0.00 5.54
8642 21377 2.349580 GTGTTAATAAAGTCGGTCGCCC 59.650 50.000 0.00 0.00 0.00 6.13
8643 21378 2.028294 TGTTAATAAAGTCGGTCGCCCA 60.028 45.455 0.00 0.00 0.00 5.36
8644 21379 3.002102 GTTAATAAAGTCGGTCGCCCAA 58.998 45.455 0.00 0.00 0.00 4.12
8645 21380 1.734163 AATAAAGTCGGTCGCCCAAG 58.266 50.000 0.00 0.00 0.00 3.61
8646 21381 0.743345 ATAAAGTCGGTCGCCCAAGC 60.743 55.000 0.00 0.00 0.00 4.01
8647 21382 1.823169 TAAAGTCGGTCGCCCAAGCT 61.823 55.000 0.00 0.00 36.60 3.74
8648 21383 1.823169 AAAGTCGGTCGCCCAAGCTA 61.823 55.000 0.00 0.00 36.60 3.32
8649 21384 1.614241 AAGTCGGTCGCCCAAGCTAT 61.614 55.000 0.00 0.00 36.60 2.97
8650 21385 0.754217 AGTCGGTCGCCCAAGCTATA 60.754 55.000 0.00 0.00 36.60 1.31
8651 21386 0.596859 GTCGGTCGCCCAAGCTATAC 60.597 60.000 0.00 0.00 36.60 1.47
8652 21387 1.300697 CGGTCGCCCAAGCTATACC 60.301 63.158 0.00 0.00 36.60 2.73
8653 21388 1.827394 GGTCGCCCAAGCTATACCA 59.173 57.895 0.00 0.00 35.29 3.25
8654 21389 0.249911 GGTCGCCCAAGCTATACCAG 60.250 60.000 0.00 0.00 35.29 4.00
8655 21390 0.464452 GTCGCCCAAGCTATACCAGT 59.536 55.000 0.00 0.00 36.60 4.00
8656 21391 1.684983 GTCGCCCAAGCTATACCAGTA 59.315 52.381 0.00 0.00 36.60 2.74
8657 21392 2.299297 GTCGCCCAAGCTATACCAGTAT 59.701 50.000 0.00 0.00 36.60 2.12
8658 21393 3.508793 GTCGCCCAAGCTATACCAGTATA 59.491 47.826 0.00 0.00 36.60 1.47
8659 21394 3.508793 TCGCCCAAGCTATACCAGTATAC 59.491 47.826 0.00 0.00 36.60 1.47
8660 21395 3.510360 CGCCCAAGCTATACCAGTATACT 59.490 47.826 0.00 0.00 36.60 2.12
8661 21396 4.021368 CGCCCAAGCTATACCAGTATACTT 60.021 45.833 1.56 0.00 36.60 2.24
8662 21397 5.184479 CGCCCAAGCTATACCAGTATACTTA 59.816 44.000 1.56 0.00 36.60 2.24
8663 21398 6.294899 CGCCCAAGCTATACCAGTATACTTAA 60.295 42.308 1.56 0.00 36.60 1.85
8664 21399 7.578955 CGCCCAAGCTATACCAGTATACTTAAT 60.579 40.741 1.56 0.00 36.60 1.40
8665 21400 7.549488 GCCCAAGCTATACCAGTATACTTAATG 59.451 40.741 1.56 0.00 35.50 1.90
8666 21401 8.041323 CCCAAGCTATACCAGTATACTTAATGG 58.959 40.741 1.56 4.98 46.65 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.778741 ACAACTAAAGACAGAAATGACTTGATA 57.221 29.630 0.00 0.00 0.00 2.15
36 37 8.682936 ACAACTAAAGACAGAAATGACTTGAT 57.317 30.769 0.00 0.00 0.00 2.57
38 39 9.226345 GAAACAACTAAAGACAGAAATGACTTG 57.774 33.333 0.00 0.00 0.00 3.16
40 41 7.254795 CGGAAACAACTAAAGACAGAAATGACT 60.255 37.037 0.00 0.00 0.00 3.41
41 42 6.851330 CGGAAACAACTAAAGACAGAAATGAC 59.149 38.462 0.00 0.00 0.00 3.06
42 43 6.540914 ACGGAAACAACTAAAGACAGAAATGA 59.459 34.615 0.00 0.00 0.00 2.57
43 44 6.725246 ACGGAAACAACTAAAGACAGAAATG 58.275 36.000 0.00 0.00 0.00 2.32
44 45 6.937436 ACGGAAACAACTAAAGACAGAAAT 57.063 33.333 0.00 0.00 0.00 2.17
47 48 5.065474 CCAAACGGAAACAACTAAAGACAGA 59.935 40.000 0.00 0.00 0.00 3.41
50 51 5.488645 TCCAAACGGAAACAACTAAAGAC 57.511 39.130 0.00 0.00 0.00 3.01
70 3460 5.692654 GCTTTCGTATCTATTCCTGACTTCC 59.307 44.000 0.00 0.00 0.00 3.46
149 5231 4.209307 TGCCTTTACATGGAACGTGATA 57.791 40.909 0.00 0.00 0.00 2.15
217 5304 5.578157 TTAGACAGCTTCCCCTAAAACTT 57.422 39.130 0.00 0.00 0.00 2.66
224 5311 3.309193 GGGATTTTTAGACAGCTTCCCCT 60.309 47.826 3.31 0.00 36.18 4.79
226 5313 3.969553 AGGGATTTTTAGACAGCTTCCC 58.030 45.455 6.26 6.26 41.39 3.97
242 5329 8.706322 TTAAGCTTTCTTCAAAACTTAGGGAT 57.294 30.769 3.20 0.00 33.63 3.85
243 5330 8.528044 TTTAAGCTTTCTTCAAAACTTAGGGA 57.472 30.769 3.20 0.00 33.63 4.20
268 5355 6.575162 AGAAATCGCAATACAGAGGTTTTT 57.425 33.333 0.00 0.00 0.00 1.94
280 5367 2.561733 TCTCGTCGAGAAATCGCAAT 57.438 45.000 22.33 0.00 35.59 3.56
293 5380 3.789224 ACGCACAAAACAATTTTCTCGTC 59.211 39.130 0.00 0.00 29.21 4.20
294 5381 3.545873 CACGCACAAAACAATTTTCTCGT 59.454 39.130 0.00 0.00 32.75 4.18
297 5384 4.743493 ACTCACGCACAAAACAATTTTCT 58.257 34.783 0.00 0.00 0.00 2.52
299 5386 4.801516 GGTACTCACGCACAAAACAATTTT 59.198 37.500 0.00 0.00 0.00 1.82
323 5410 3.974585 GAGAAAACCAATCTCGACGAC 57.025 47.619 0.00 0.00 34.50 4.34
341 5428 0.460284 ACCTTGCGGCTCAATACGAG 60.460 55.000 0.00 0.00 45.37 4.18
343 5430 0.373716 GAACCTTGCGGCTCAATACG 59.626 55.000 0.00 0.00 33.57 3.06
346 5433 1.000274 GTTTGAACCTTGCGGCTCAAT 60.000 47.619 0.00 0.00 43.04 2.57
347 5434 0.383949 GTTTGAACCTTGCGGCTCAA 59.616 50.000 0.00 0.00 42.16 3.02
349 5436 1.285950 GGTTTGAACCTTGCGGCTC 59.714 57.895 5.66 0.00 45.75 4.70
368 5455 4.032445 GCACACGATGTACACGAAATACAT 59.968 41.667 19.80 9.62 44.19 2.29
370 5457 3.538828 CGCACACGATGTACACGAAATAC 60.539 47.826 19.80 7.97 43.93 1.89
373 5460 0.779408 CGCACACGATGTACACGAAA 59.221 50.000 19.80 0.00 43.93 3.46
416 7197 2.546778 TCTTTCACGACACTCCAACAC 58.453 47.619 0.00 0.00 0.00 3.32
417 7198 2.971660 TCTTTCACGACACTCCAACA 57.028 45.000 0.00 0.00 0.00 3.33
419 7200 2.609491 CCGATCTTTCACGACACTCCAA 60.609 50.000 0.00 0.00 0.00 3.53
453 12315 3.893572 TCGTGACGCGATCTGGTA 58.106 55.556 15.93 0.00 45.68 3.25
462 12324 2.804090 GACCGAACCTCGTGACGC 60.804 66.667 0.00 0.00 38.40 5.19
463 12325 2.126580 GGACCGAACCTCGTGACG 60.127 66.667 0.00 0.00 38.40 4.35
465 12327 1.679680 GATATGGACCGAACCTCGTGA 59.320 52.381 0.00 0.00 38.40 4.35
466 12328 1.407618 TGATATGGACCGAACCTCGTG 59.592 52.381 0.00 0.00 38.40 4.35
471 12333 1.139058 ACTGCTGATATGGACCGAACC 59.861 52.381 0.00 0.00 0.00 3.62
473 12335 1.412710 GGACTGCTGATATGGACCGAA 59.587 52.381 0.00 0.00 0.00 4.30
477 12339 4.517285 TCTTTTGGACTGCTGATATGGAC 58.483 43.478 0.00 0.00 0.00 4.02
482 12344 4.272489 CCCATTCTTTTGGACTGCTGATA 58.728 43.478 0.00 0.00 39.25 2.15
501 12363 0.548926 TGGACAATGTCTAGGGCCCA 60.549 55.000 27.56 9.36 32.47 5.36
539 12401 8.936864 GCATGAATTATAGTAATACACCTGGAC 58.063 37.037 0.00 0.00 0.00 4.02
541 12403 7.336931 GGGCATGAATTATAGTAATACACCTGG 59.663 40.741 0.00 0.00 0.00 4.45
548 12410 7.026697 TGGCAGGGCATGAATTATAGTAATA 57.973 36.000 1.99 0.00 0.00 0.98
549 12411 5.891198 TGGCAGGGCATGAATTATAGTAAT 58.109 37.500 1.99 0.00 0.00 1.89
550 12412 5.317600 TGGCAGGGCATGAATTATAGTAA 57.682 39.130 1.99 0.00 0.00 2.24
560 12422 4.112433 TGCGATGGCAGGGCATGA 62.112 61.111 13.43 0.00 46.21 3.07
606 12468 1.586422 CACGACCATGATAGGCCTTG 58.414 55.000 12.58 1.91 0.00 3.61
607 12469 0.179045 GCACGACCATGATAGGCCTT 60.179 55.000 12.58 0.00 0.00 4.35
612 12474 2.299993 ACAGTGCACGACCATGATAG 57.700 50.000 12.01 0.00 0.00 2.08
648 12510 9.715121 ATTTTGATATTGAGCAGACAAAATGTT 57.285 25.926 0.00 0.00 42.32 2.71
652 12514 9.357652 GCTTATTTTGATATTGAGCAGACAAAA 57.642 29.630 0.00 0.00 39.98 2.44
664 12526 8.893727 ACTAGCAAACGAGCTTATTTTGATATT 58.106 29.630 15.88 8.17 43.70 1.28
665 12527 8.438676 ACTAGCAAACGAGCTTATTTTGATAT 57.561 30.769 15.88 6.70 43.70 1.63
703 12565 8.394121 GCATCTCAAAAGAAGTAGGAGTATTTG 58.606 37.037 0.00 0.00 34.49 2.32
707 12569 6.605471 TGCATCTCAAAAGAAGTAGGAGTA 57.395 37.500 0.00 0.00 34.49 2.59
804 12666 2.273370 TCGACTTCCGGAGAATTTCG 57.727 50.000 3.34 9.84 39.14 3.46
827 12689 5.977533 AGATCCAACTATAGGACCCACATA 58.022 41.667 4.43 0.00 38.13 2.29
883 12745 0.598065 AAAATTGCGTGGGAGACAGC 59.402 50.000 0.00 0.00 0.00 4.40
943 12806 2.781595 TTCAGTTTCCGCTCCGAGGC 62.782 60.000 0.00 0.00 0.00 4.70
1222 13085 3.376078 GTGGTAGGCGTCGTGGGA 61.376 66.667 0.00 0.00 0.00 4.37
1341 13204 3.723554 GAGGCTTCGAATCGACAGT 57.276 52.632 4.25 0.00 34.89 3.55
1456 13319 2.678336 CAATTCTCCACCTCGCCTAAAC 59.322 50.000 0.00 0.00 0.00 2.01
1598 13461 8.526147 CAAGACCAACATTCCAGATTTAAAGAT 58.474 33.333 0.00 0.00 0.00 2.40
1599 13462 7.523709 GCAAGACCAACATTCCAGATTTAAAGA 60.524 37.037 0.00 0.00 0.00 2.52
1600 13463 6.587608 GCAAGACCAACATTCCAGATTTAAAG 59.412 38.462 0.00 0.00 0.00 1.85
1603 13466 5.324409 AGCAAGACCAACATTCCAGATTTA 58.676 37.500 0.00 0.00 0.00 1.40
1607 13470 2.957402 AGCAAGACCAACATTCCAGA 57.043 45.000 0.00 0.00 0.00 3.86
1658 13521 4.279922 TCGACGCAGAATTAGGGATATGAA 59.720 41.667 0.00 0.00 0.00 2.57
1687 13550 7.341256 AGAAAATGTCACATCAGATGGCTTAAT 59.659 33.333 15.13 0.00 33.60 1.40
1694 13557 8.260270 TCAGTAAGAAAATGTCACATCAGATG 57.740 34.615 9.03 9.03 0.00 2.90
2234 14104 5.304871 TCATGATCTCTCTCTTCCTCCATTG 59.695 44.000 0.00 0.00 0.00 2.82
2286 14204 2.158986 AGGAGCAGGTTCATCTTCATCG 60.159 50.000 0.00 0.00 0.00 3.84
2320 14238 7.031372 ACATTGGAATCTTCGTCAATTTCATG 58.969 34.615 0.00 0.00 0.00 3.07
2457 14375 7.065563 GCATTATCCTTATCATCCAGTAAGCAG 59.934 40.741 0.00 0.00 0.00 4.24
2791 14709 6.433093 TCTCATATTGCAATTCATCCTCCATG 59.567 38.462 18.75 11.49 0.00 3.66
2881 14799 3.487207 GCTTCTCTTTTGTTTTTGGCTCG 59.513 43.478 0.00 0.00 0.00 5.03
2977 14895 7.288810 ACTGAAAGGCAAGATTTAAATGTGA 57.711 32.000 5.17 0.00 39.30 3.58
3126 15044 3.627577 TCAAAAGCCAAGAGACTGTTGTC 59.372 43.478 11.09 0.00 43.22 3.18
3127 15045 3.620488 TCAAAAGCCAAGAGACTGTTGT 58.380 40.909 11.09 0.00 33.60 3.32
3128 15046 4.096984 ACTTCAAAAGCCAAGAGACTGTTG 59.903 41.667 5.36 5.36 33.22 3.33
3129 15047 4.273318 ACTTCAAAAGCCAAGAGACTGTT 58.727 39.130 0.00 0.00 0.00 3.16
3130 15048 3.879892 GACTTCAAAAGCCAAGAGACTGT 59.120 43.478 0.00 0.00 0.00 3.55
3131 15049 4.133078 AGACTTCAAAAGCCAAGAGACTG 58.867 43.478 0.00 0.00 0.00 3.51
3132 15050 4.429854 AGACTTCAAAAGCCAAGAGACT 57.570 40.909 0.00 0.00 0.00 3.24
3133 15051 5.301555 ACTAGACTTCAAAAGCCAAGAGAC 58.698 41.667 0.00 0.00 0.00 3.36
3134 15052 5.552870 ACTAGACTTCAAAAGCCAAGAGA 57.447 39.130 0.00 0.00 0.00 3.10
3135 15053 5.350091 GCTACTAGACTTCAAAAGCCAAGAG 59.650 44.000 0.00 0.00 0.00 2.85
3136 15054 5.238583 GCTACTAGACTTCAAAAGCCAAGA 58.761 41.667 0.00 0.00 0.00 3.02
3137 15055 4.092091 CGCTACTAGACTTCAAAAGCCAAG 59.908 45.833 0.00 0.00 0.00 3.61
3138 15056 3.994392 CGCTACTAGACTTCAAAAGCCAA 59.006 43.478 0.00 0.00 0.00 4.52
3139 15057 3.257375 TCGCTACTAGACTTCAAAAGCCA 59.743 43.478 0.00 0.00 0.00 4.75
3140 15058 3.846360 TCGCTACTAGACTTCAAAAGCC 58.154 45.455 0.00 0.00 0.00 4.35
3141 15059 7.701809 AATATCGCTACTAGACTTCAAAAGC 57.298 36.000 0.00 0.00 0.00 3.51
3238 15191 2.053627 CAGAAAAAGGCATGCAACGTC 58.946 47.619 21.36 9.58 0.00 4.34
3394 15347 2.681344 GCTCATCAATCATCACAGCACA 59.319 45.455 0.00 0.00 0.00 4.57
3826 15779 6.707161 ACTACATTGCTGCATGAAAAATGTTT 59.293 30.769 17.42 6.00 40.77 2.83
3966 15919 7.440198 ACCATCATGATGTCATAAGTAGAGTG 58.560 38.462 29.23 14.02 37.11 3.51
4395 16359 6.855763 ACTCCCTGCATTATGATTCAAAAA 57.144 33.333 0.00 0.00 0.00 1.94
4515 16479 6.638468 GCATCTTAACAGTTTTCTTGTTCTGG 59.362 38.462 0.00 0.00 32.92 3.86
4521 16485 8.323140 CACTTTTGCATCTTAACAGTTTTCTTG 58.677 33.333 0.00 0.00 0.00 3.02
4599 16563 5.506708 ACTGGACTAAACAGTGGAGTTTTT 58.493 37.500 0.00 0.00 46.67 1.94
4620 16584 5.503927 AGTCAATGAGCATATTCAACCACT 58.496 37.500 0.00 0.00 0.00 4.00
4742 16706 6.096705 CCCTATGGCTATCAGTAAGAGAGATG 59.903 46.154 0.00 0.00 37.80 2.90
4959 16931 0.613012 GGCTGGGCTGGATTCTGTTT 60.613 55.000 0.00 0.00 0.00 2.83
4996 16968 2.023673 AGATCAAGCAGAGAGAGGACG 58.976 52.381 0.00 0.00 0.00 4.79
5049 17022 4.324254 GGTTTATCCAGTCATCAAGTCCCA 60.324 45.833 0.00 0.00 35.97 4.37
5058 17031 5.454755 CGTCCAATAGGGTTTATCCAGTCAT 60.455 44.000 0.00 0.00 38.11 3.06
5061 17034 3.778629 ACGTCCAATAGGGTTTATCCAGT 59.221 43.478 0.00 0.00 38.11 4.00
5091 17066 1.918957 AGAATGGAAGCTGCTAAGGGT 59.081 47.619 0.90 0.00 0.00 4.34
5152 17127 5.670792 TCGTTTCAGGGCTATAGAAAAGA 57.329 39.130 3.21 0.34 37.40 2.52
5166 17141 2.169352 ACTCATCCTCCCATCGTTTCAG 59.831 50.000 0.00 0.00 0.00 3.02
5173 17148 5.541868 TGATCTTAGAACTCATCCTCCCATC 59.458 44.000 0.00 0.00 0.00 3.51
5210 17186 6.761099 TGTCTAGAGGAGTGAGTACAAATC 57.239 41.667 0.00 0.00 0.00 2.17
5277 17255 6.966534 AAGGTCAATTTTCTCATGTGTCTT 57.033 33.333 0.00 0.00 0.00 3.01
5278 17256 6.966534 AAAGGTCAATTTTCTCATGTGTCT 57.033 33.333 0.00 0.00 0.00 3.41
5279 17257 9.696917 ATTTAAAGGTCAATTTTCTCATGTGTC 57.303 29.630 0.00 0.00 0.00 3.67
5337 17315 1.191535 GACCAAAATAAGTGGGGGCC 58.808 55.000 0.00 0.00 40.75 5.80
5410 17612 8.250332 TCAAGCTCAAACTCTACAAAACAAAAT 58.750 29.630 0.00 0.00 0.00 1.82
5495 17702 8.172070 AGAACTATTAGACCCTACCCTTAGATC 58.828 40.741 0.00 0.00 0.00 2.75
5548 17755 5.940617 TGAGAACCCCTAACCATAATCATG 58.059 41.667 0.00 0.00 0.00 3.07
5613 17820 7.038587 TGGAGCTAGTTAAGGAAATGAACTACA 60.039 37.037 0.00 0.00 35.17 2.74
5655 17862 9.003658 CCATTACTCATTTTCTCTTTGTACTGT 57.996 33.333 0.00 0.00 0.00 3.55
5702 17909 4.753107 GGGTGTTCAAGACTTCAAATACGA 59.247 41.667 0.00 0.00 0.00 3.43
5855 18145 2.936919 AGAGGTCAGCAATGAACACA 57.063 45.000 0.00 0.00 0.00 3.72
5861 18151 2.554032 ACGGAAAAAGAGGTCAGCAATG 59.446 45.455 0.00 0.00 0.00 2.82
6106 18396 6.310069 ATCTTCTTGATTGGCAAAAAGCAGC 61.310 40.000 16.90 0.00 35.09 5.25
6388 18684 5.556915 TGTACATTCAAGAAGGTAACCCAG 58.443 41.667 8.66 0.00 38.96 4.45
6566 18863 8.798402 CCCACAAATACAACCTCACTTATTTAA 58.202 33.333 0.00 0.00 0.00 1.52
6567 18864 7.094118 GCCCACAAATACAACCTCACTTATTTA 60.094 37.037 0.00 0.00 0.00 1.40
6568 18865 6.295067 GCCCACAAATACAACCTCACTTATTT 60.295 38.462 0.00 0.00 0.00 1.40
6630 18932 5.744345 CGGAGCTAGTAACACACAAGAATAG 59.256 44.000 0.00 0.00 0.00 1.73
6768 19070 3.011032 AGCCTCCAAGTCATCCTCAAAAT 59.989 43.478 0.00 0.00 0.00 1.82
6945 19247 1.518302 GCGAGAAGGAGGGAAGGAC 59.482 63.158 0.00 0.00 0.00 3.85
7021 19323 0.901827 TGCTCAATGTCCTCGCCTAA 59.098 50.000 0.00 0.00 0.00 2.69
7022 19324 0.175760 GTGCTCAATGTCCTCGCCTA 59.824 55.000 0.00 0.00 0.00 3.93
7149 19451 8.899771 CAACCTACTTCTTAAAAGGAAAACTGA 58.100 33.333 0.00 0.00 33.16 3.41
7164 19467 5.365619 CAGTTTACCACACAACCTACTTCT 58.634 41.667 0.00 0.00 0.00 2.85
7165 19468 4.024302 GCAGTTTACCACACAACCTACTTC 60.024 45.833 0.00 0.00 0.00 3.01
7174 19477 3.207778 GGTTACTGCAGTTTACCACACA 58.792 45.455 30.87 10.25 34.01 3.72
7338 19641 7.117956 AGCGAAAGAAAACTATCTACAAAGTCC 59.882 37.037 0.00 0.00 0.00 3.85
7352 19655 1.664302 GGCAGCAGAGCGAAAGAAAAC 60.664 52.381 0.00 0.00 34.64 2.43
7374 19677 4.092279 ACCATCTCACTCTCAGATCAACA 58.908 43.478 0.00 0.00 0.00 3.33
7509 19814 1.283793 CGCTTTGGTTCCTGCACAG 59.716 57.895 0.00 0.00 0.00 3.66
7660 19965 6.498651 AGTTCTATTTTCTCCTCCTTCACTCA 59.501 38.462 0.00 0.00 0.00 3.41
7684 19989 4.857588 AGAGACAAATGTACGTTAGCGAAG 59.142 41.667 5.81 0.00 42.00 3.79
7690 19995 3.678072 GCAGCAGAGACAAATGTACGTTA 59.322 43.478 0.00 0.00 0.00 3.18
7805 20115 3.690475 TCACTGTTCATGATCTGCACT 57.310 42.857 0.00 0.00 0.00 4.40
7920 20230 5.049818 ACACAATTTTTCTCTCAAGAGCTCG 60.050 40.000 8.37 0.00 41.80 5.03
7924 20234 7.440556 TCTGAGACACAATTTTTCTCTCAAGAG 59.559 37.037 0.33 0.33 43.36 2.85
7925 20235 7.275183 TCTGAGACACAATTTTTCTCTCAAGA 58.725 34.615 8.48 2.61 37.50 3.02
7926 20236 7.440556 TCTCTGAGACACAATTTTTCTCTCAAG 59.559 37.037 2.58 0.00 37.50 3.02
7927 20237 7.275183 TCTCTGAGACACAATTTTTCTCTCAA 58.725 34.615 2.58 0.00 37.50 3.02
7929 20239 7.721286 TTCTCTGAGACACAATTTTTCTCTC 57.279 36.000 6.92 0.00 37.31 3.20
7930 20240 7.772757 AGTTTCTCTGAGACACAATTTTTCTCT 59.227 33.333 22.05 0.00 37.31 3.10
7931 20241 7.924940 AGTTTCTCTGAGACACAATTTTTCTC 58.075 34.615 22.05 0.00 36.99 2.87
7932 20242 7.872113 AGTTTCTCTGAGACACAATTTTTCT 57.128 32.000 22.05 0.63 27.67 2.52
7993 20308 6.239036 GGCAAAATAACACTGAAGGAAGTCTT 60.239 38.462 0.00 0.00 38.65 3.01
8006 20321 7.205297 AGATGCTTATCATGGCAAAATAACAC 58.795 34.615 0.00 0.00 41.90 3.32
8055 20393 6.470235 GCATCGGATGAACAGTAAATTCAAAG 59.530 38.462 21.69 0.00 39.43 2.77
8059 20397 5.163764 TGTGCATCGGATGAACAGTAAATTC 60.164 40.000 24.69 2.84 43.79 2.17
8092 20433 3.445008 TCCCTCAAAGATGCTCTAGTGT 58.555 45.455 0.00 0.00 0.00 3.55
8137 20480 8.301002 ACGTGCACCAATAAACAGTAAATAAAT 58.699 29.630 12.15 0.00 0.00 1.40
8138 20481 7.591795 CACGTGCACCAATAAACAGTAAATAAA 59.408 33.333 12.15 0.00 0.00 1.40
8139 20482 7.078851 CACGTGCACCAATAAACAGTAAATAA 58.921 34.615 12.15 0.00 0.00 1.40
8140 20483 6.348622 CCACGTGCACCAATAAACAGTAAATA 60.349 38.462 10.91 0.00 0.00 1.40
8151 20494 3.427425 GCGCCACGTGCACCAATA 61.427 61.111 10.91 0.00 41.33 1.90
8252 20987 4.066139 GCCTGGCCCCCTGACAAT 62.066 66.667 7.66 0.00 0.00 2.71
8406 21141 7.596749 CACCCCTTGCTAAAATATATAGACG 57.403 40.000 0.77 0.00 0.00 4.18
8428 21163 2.328099 CCTTCTCTGTTGCGGGCAC 61.328 63.158 0.00 0.00 0.00 5.01
8429 21164 2.032528 CCTTCTCTGTTGCGGGCA 59.967 61.111 0.00 0.00 0.00 5.36
8430 21165 2.543067 ATCCCTTCTCTGTTGCGGGC 62.543 60.000 0.00 0.00 34.84 6.13
8431 21166 0.830648 TATCCCTTCTCTGTTGCGGG 59.169 55.000 0.00 0.00 36.21 6.13
8432 21167 1.482593 ACTATCCCTTCTCTGTTGCGG 59.517 52.381 0.00 0.00 0.00 5.69
8433 21168 2.969628 ACTATCCCTTCTCTGTTGCG 57.030 50.000 0.00 0.00 0.00 4.85
8434 21169 8.732746 TTTTTATACTATCCCTTCTCTGTTGC 57.267 34.615 0.00 0.00 0.00 4.17
8461 21196 9.435688 AGCGACTTATTATGAACATGCATAATA 57.564 29.630 15.96 15.96 45.06 0.98
8463 21198 7.728847 AGCGACTTATTATGAACATGCATAA 57.271 32.000 0.00 7.84 42.86 1.90
8464 21199 8.825667 TTAGCGACTTATTATGAACATGCATA 57.174 30.769 0.00 0.00 0.00 3.14
8465 21200 7.442364 ACTTAGCGACTTATTATGAACATGCAT 59.558 33.333 0.00 0.00 0.00 3.96
8466 21201 6.761242 ACTTAGCGACTTATTATGAACATGCA 59.239 34.615 0.00 0.00 0.00 3.96
8467 21202 7.042725 TCACTTAGCGACTTATTATGAACATGC 60.043 37.037 0.00 0.00 0.00 4.06
8468 21203 8.269424 GTCACTTAGCGACTTATTATGAACATG 58.731 37.037 0.00 0.00 0.00 3.21
8469 21204 7.979537 TGTCACTTAGCGACTTATTATGAACAT 59.020 33.333 2.02 0.00 34.37 2.71
8470 21205 7.317390 TGTCACTTAGCGACTTATTATGAACA 58.683 34.615 2.02 0.00 34.37 3.18
8471 21206 7.701078 TCTGTCACTTAGCGACTTATTATGAAC 59.299 37.037 2.02 0.00 34.37 3.18
8472 21207 7.768240 TCTGTCACTTAGCGACTTATTATGAA 58.232 34.615 2.02 0.00 34.37 2.57
8473 21208 7.329588 TCTGTCACTTAGCGACTTATTATGA 57.670 36.000 2.02 0.00 34.37 2.15
8474 21209 9.119329 GTATCTGTCACTTAGCGACTTATTATG 57.881 37.037 2.02 0.00 34.37 1.90
8475 21210 9.069082 AGTATCTGTCACTTAGCGACTTATTAT 57.931 33.333 2.02 0.00 34.37 1.28
8476 21211 8.447924 AGTATCTGTCACTTAGCGACTTATTA 57.552 34.615 2.02 0.00 34.37 0.98
8477 21212 7.336161 AGTATCTGTCACTTAGCGACTTATT 57.664 36.000 2.02 0.00 34.37 1.40
8478 21213 6.945938 AGTATCTGTCACTTAGCGACTTAT 57.054 37.500 2.02 0.00 34.37 1.73
8479 21214 6.754702 AAGTATCTGTCACTTAGCGACTTA 57.245 37.500 2.02 0.00 34.50 2.24
8480 21215 5.646577 AAGTATCTGTCACTTAGCGACTT 57.353 39.130 2.02 0.00 34.50 3.01
8481 21216 6.366315 CTAAGTATCTGTCACTTAGCGACT 57.634 41.667 13.92 0.00 44.97 4.18
8487 21222 6.267014 GGGCATACCTAAGTATCTGTCACTTA 59.733 42.308 0.00 0.00 37.06 2.24
8488 21223 5.070580 GGGCATACCTAAGTATCTGTCACTT 59.929 44.000 0.00 0.00 37.06 3.16
8489 21224 4.589374 GGGCATACCTAAGTATCTGTCACT 59.411 45.833 0.00 0.00 37.06 3.41
8490 21225 4.344102 TGGGCATACCTAAGTATCTGTCAC 59.656 45.833 0.00 0.00 37.06 3.67
8491 21226 4.344102 GTGGGCATACCTAAGTATCTGTCA 59.656 45.833 0.00 0.00 37.06 3.58
8492 21227 4.558898 CGTGGGCATACCTAAGTATCTGTC 60.559 50.000 0.00 0.00 37.06 3.51
8493 21228 3.321111 CGTGGGCATACCTAAGTATCTGT 59.679 47.826 0.00 0.00 37.06 3.41
8494 21229 3.306088 CCGTGGGCATACCTAAGTATCTG 60.306 52.174 0.00 0.00 37.06 2.90
8495 21230 2.897969 CCGTGGGCATACCTAAGTATCT 59.102 50.000 0.00 0.00 37.06 1.98
8496 21231 2.895404 TCCGTGGGCATACCTAAGTATC 59.105 50.000 0.00 0.00 37.06 2.24
8497 21232 2.966915 TCCGTGGGCATACCTAAGTAT 58.033 47.619 0.00 0.00 39.90 2.12
8498 21233 2.457813 TCCGTGGGCATACCTAAGTA 57.542 50.000 0.00 0.00 41.11 2.24
8499 21234 1.416401 CATCCGTGGGCATACCTAAGT 59.584 52.381 0.00 0.00 41.11 2.24
8500 21235 1.416401 ACATCCGTGGGCATACCTAAG 59.584 52.381 0.00 0.00 41.11 2.18
8501 21236 1.502690 ACATCCGTGGGCATACCTAA 58.497 50.000 0.00 0.00 41.11 2.69
8502 21237 1.140052 CAACATCCGTGGGCATACCTA 59.860 52.381 0.00 0.00 41.11 3.08
8503 21238 0.107214 CAACATCCGTGGGCATACCT 60.107 55.000 0.00 0.00 41.11 3.08
8504 21239 1.101049 CCAACATCCGTGGGCATACC 61.101 60.000 0.00 0.00 40.81 2.73
8505 21240 2.404083 CCAACATCCGTGGGCATAC 58.596 57.895 0.00 0.00 26.09 2.39
8506 21241 4.975132 CCAACATCCGTGGGCATA 57.025 55.556 0.00 0.00 26.09 3.14
8510 21245 1.666209 GATTGGCCAACATCCGTGGG 61.666 60.000 23.27 0.00 39.57 4.61
8511 21246 1.666209 GGATTGGCCAACATCCGTGG 61.666 60.000 23.27 0.00 36.34 4.94
8512 21247 0.964860 TGGATTGGCCAACATCCGTG 60.965 55.000 26.04 0.00 45.87 4.94
8513 21248 1.382240 TGGATTGGCCAACATCCGT 59.618 52.632 26.04 9.88 45.87 4.69
8514 21249 4.335214 TGGATTGGCCAACATCCG 57.665 55.556 26.04 0.00 45.87 4.18
8522 21257 3.431673 TTTTCCCATTTTGGATTGGCC 57.568 42.857 0.00 0.00 40.96 5.36
8523 21258 5.981088 AAATTTTCCCATTTTGGATTGGC 57.019 34.783 0.00 0.00 40.96 4.52
8533 21268 9.791781 TCCCTTAGGTATTTAAATTTTCCCATT 57.208 29.630 5.91 0.00 0.00 3.16
8534 21269 9.209048 GTCCCTTAGGTATTTAAATTTTCCCAT 57.791 33.333 5.91 0.00 0.00 4.00
8535 21270 8.178132 TGTCCCTTAGGTATTTAAATTTTCCCA 58.822 33.333 5.91 0.00 0.00 4.37
8536 21271 8.598202 TGTCCCTTAGGTATTTAAATTTTCCC 57.402 34.615 5.91 2.39 0.00 3.97
8537 21272 9.470399 TCTGTCCCTTAGGTATTTAAATTTTCC 57.530 33.333 5.91 7.23 0.00 3.13
8544 21279 8.665906 CCCATATTCTGTCCCTTAGGTATTTAA 58.334 37.037 0.00 0.00 0.00 1.52
8545 21280 8.020253 TCCCATATTCTGTCCCTTAGGTATTTA 58.980 37.037 0.00 0.00 0.00 1.40
8546 21281 6.855061 TCCCATATTCTGTCCCTTAGGTATTT 59.145 38.462 0.00 0.00 0.00 1.40
8547 21282 6.399013 TCCCATATTCTGTCCCTTAGGTATT 58.601 40.000 0.00 0.00 0.00 1.89
8548 21283 5.989717 TCCCATATTCTGTCCCTTAGGTAT 58.010 41.667 0.00 0.00 0.00 2.73
8549 21284 5.427857 TCCCATATTCTGTCCCTTAGGTA 57.572 43.478 0.00 0.00 0.00 3.08
8550 21285 4.295905 TCCCATATTCTGTCCCTTAGGT 57.704 45.455 0.00 0.00 0.00 3.08
8551 21286 5.646692 TTTCCCATATTCTGTCCCTTAGG 57.353 43.478 0.00 0.00 0.00 2.69
8552 21287 6.900194 TCTTTTCCCATATTCTGTCCCTTAG 58.100 40.000 0.00 0.00 0.00 2.18
8553 21288 6.901615 TCTTTTCCCATATTCTGTCCCTTA 57.098 37.500 0.00 0.00 0.00 2.69
8554 21289 5.796502 TCTTTTCCCATATTCTGTCCCTT 57.203 39.130 0.00 0.00 0.00 3.95
8555 21290 7.350921 TCTTATCTTTTCCCATATTCTGTCCCT 59.649 37.037 0.00 0.00 0.00 4.20
8556 21291 7.518188 TCTTATCTTTTCCCATATTCTGTCCC 58.482 38.462 0.00 0.00 0.00 4.46
8557 21292 7.663493 CCTCTTATCTTTTCCCATATTCTGTCC 59.337 40.741 0.00 0.00 0.00 4.02
8558 21293 8.432805 TCCTCTTATCTTTTCCCATATTCTGTC 58.567 37.037 0.00 0.00 0.00 3.51
8559 21294 8.337118 TCCTCTTATCTTTTCCCATATTCTGT 57.663 34.615 0.00 0.00 0.00 3.41
8560 21295 9.228949 CATCCTCTTATCTTTTCCCATATTCTG 57.771 37.037 0.00 0.00 0.00 3.02
8561 21296 8.389366 CCATCCTCTTATCTTTTCCCATATTCT 58.611 37.037 0.00 0.00 0.00 2.40
8562 21297 8.386264 TCCATCCTCTTATCTTTTCCCATATTC 58.614 37.037 0.00 0.00 0.00 1.75
8563 21298 8.293027 TCCATCCTCTTATCTTTTCCCATATT 57.707 34.615 0.00 0.00 0.00 1.28
8564 21299 7.895144 TCCATCCTCTTATCTTTTCCCATAT 57.105 36.000 0.00 0.00 0.00 1.78
8565 21300 7.295672 ACATCCATCCTCTTATCTTTTCCCATA 59.704 37.037 0.00 0.00 0.00 2.74
8566 21301 6.103797 ACATCCATCCTCTTATCTTTTCCCAT 59.896 38.462 0.00 0.00 0.00 4.00
8567 21302 5.433051 ACATCCATCCTCTTATCTTTTCCCA 59.567 40.000 0.00 0.00 0.00 4.37
8568 21303 5.946486 ACATCCATCCTCTTATCTTTTCCC 58.054 41.667 0.00 0.00 0.00 3.97
8569 21304 7.967908 TCTACATCCATCCTCTTATCTTTTCC 58.032 38.462 0.00 0.00 0.00 3.13
8570 21305 9.487790 CTTCTACATCCATCCTCTTATCTTTTC 57.512 37.037 0.00 0.00 0.00 2.29
8571 21306 7.936301 GCTTCTACATCCATCCTCTTATCTTTT 59.064 37.037 0.00 0.00 0.00 2.27
8572 21307 7.292120 AGCTTCTACATCCATCCTCTTATCTTT 59.708 37.037 0.00 0.00 0.00 2.52
8573 21308 6.786959 AGCTTCTACATCCATCCTCTTATCTT 59.213 38.462 0.00 0.00 0.00 2.40
8574 21309 6.322126 AGCTTCTACATCCATCCTCTTATCT 58.678 40.000 0.00 0.00 0.00 1.98
8575 21310 6.603940 AGCTTCTACATCCATCCTCTTATC 57.396 41.667 0.00 0.00 0.00 1.75
8576 21311 8.677870 AATAGCTTCTACATCCATCCTCTTAT 57.322 34.615 0.00 0.00 0.00 1.73
8577 21312 9.775539 ATAATAGCTTCTACATCCATCCTCTTA 57.224 33.333 0.00 0.00 0.00 2.10
8578 21313 8.677870 ATAATAGCTTCTACATCCATCCTCTT 57.322 34.615 0.00 0.00 0.00 2.85
8579 21314 8.677870 AATAATAGCTTCTACATCCATCCTCT 57.322 34.615 0.00 0.00 0.00 3.69
8597 21332 5.936956 CCTCCTTTCCTGCAGCTAATAATAG 59.063 44.000 8.66 0.00 0.00 1.73
8598 21333 5.369699 ACCTCCTTTCCTGCAGCTAATAATA 59.630 40.000 8.66 0.00 0.00 0.98
8599 21334 4.166919 ACCTCCTTTCCTGCAGCTAATAAT 59.833 41.667 8.66 0.00 0.00 1.28
8600 21335 3.523564 ACCTCCTTTCCTGCAGCTAATAA 59.476 43.478 8.66 0.00 0.00 1.40
8601 21336 3.115390 ACCTCCTTTCCTGCAGCTAATA 58.885 45.455 8.66 0.00 0.00 0.98
8602 21337 1.918957 ACCTCCTTTCCTGCAGCTAAT 59.081 47.619 8.66 0.00 0.00 1.73
8603 21338 1.003580 CACCTCCTTTCCTGCAGCTAA 59.996 52.381 8.66 1.44 0.00 3.09
8604 21339 0.615331 CACCTCCTTTCCTGCAGCTA 59.385 55.000 8.66 0.00 0.00 3.32
8605 21340 1.377994 CACCTCCTTTCCTGCAGCT 59.622 57.895 8.66 0.00 0.00 4.24
8606 21341 0.538287 AACACCTCCTTTCCTGCAGC 60.538 55.000 8.66 0.00 0.00 5.25
8607 21342 2.859165 TAACACCTCCTTTCCTGCAG 57.141 50.000 6.78 6.78 0.00 4.41
8608 21343 3.806949 ATTAACACCTCCTTTCCTGCA 57.193 42.857 0.00 0.00 0.00 4.41
8609 21344 5.710567 ACTTTATTAACACCTCCTTTCCTGC 59.289 40.000 0.00 0.00 0.00 4.85
8610 21345 6.092259 CGACTTTATTAACACCTCCTTTCCTG 59.908 42.308 0.00 0.00 0.00 3.86
8611 21346 6.171213 CGACTTTATTAACACCTCCTTTCCT 58.829 40.000 0.00 0.00 0.00 3.36
8612 21347 5.353400 CCGACTTTATTAACACCTCCTTTCC 59.647 44.000 0.00 0.00 0.00 3.13
8613 21348 5.936372 ACCGACTTTATTAACACCTCCTTTC 59.064 40.000 0.00 0.00 0.00 2.62
8614 21349 5.872963 ACCGACTTTATTAACACCTCCTTT 58.127 37.500 0.00 0.00 0.00 3.11
8615 21350 5.485620 GACCGACTTTATTAACACCTCCTT 58.514 41.667 0.00 0.00 0.00 3.36
8616 21351 4.381292 CGACCGACTTTATTAACACCTCCT 60.381 45.833 0.00 0.00 0.00 3.69
8617 21352 3.861689 CGACCGACTTTATTAACACCTCC 59.138 47.826 0.00 0.00 0.00 4.30
8618 21353 3.305361 GCGACCGACTTTATTAACACCTC 59.695 47.826 0.00 0.00 0.00 3.85
8619 21354 3.256558 GCGACCGACTTTATTAACACCT 58.743 45.455 0.00 0.00 0.00 4.00
8620 21355 2.349580 GGCGACCGACTTTATTAACACC 59.650 50.000 0.00 0.00 0.00 4.16
8621 21356 2.349580 GGGCGACCGACTTTATTAACAC 59.650 50.000 0.00 0.00 43.64 3.32
8622 21357 2.620242 GGGCGACCGACTTTATTAACA 58.380 47.619 0.00 0.00 43.64 2.41
8636 21371 0.464452 ACTGGTATAGCTTGGGCGAC 59.536 55.000 3.20 0.00 44.37 5.19
8637 21372 2.076207 TACTGGTATAGCTTGGGCGA 57.924 50.000 3.20 0.00 44.37 5.54
8638 21373 3.510360 AGTATACTGGTATAGCTTGGGCG 59.490 47.826 4.10 0.00 44.37 6.13
8639 21374 5.485209 AAGTATACTGGTATAGCTTGGGC 57.515 43.478 6.06 0.00 39.06 5.36
8640 21375 8.041323 CCATTAAGTATACTGGTATAGCTTGGG 58.959 40.741 6.06 13.34 29.50 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.