Multiple sequence alignment - TraesCS2D01G262900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G262900 chr2D 100.000 7760 0 0 1 7760 320175180 320182939 0.000000e+00 14331.0
1 TraesCS2D01G262900 chr2D 87.037 54 4 2 7710 7760 215871045 215871098 3.020000e-04 58.4
2 TraesCS2D01G262900 chr2B 93.762 4841 121 60 668 5433 388113368 388118102 0.000000e+00 7099.0
3 TraesCS2D01G262900 chr2B 95.900 1683 55 4 5450 7119 388121280 388122961 0.000000e+00 2713.0
4 TraesCS2D01G262900 chr2B 88.183 567 14 10 115 661 388112882 388113415 1.840000e-175 627.0
5 TraesCS2D01G262900 chr2B 84.409 186 25 3 2133 2316 800200888 800200705 6.190000e-41 180.0
6 TraesCS2D01G262900 chr2B 80.451 133 19 6 7628 7757 408350943 408351071 2.310000e-15 95.3
7 TraesCS2D01G262900 chr2A 96.317 3258 89 13 2189 5431 411091543 411088302 0.000000e+00 5323.0
8 TraesCS2D01G262900 chr2A 94.618 1598 65 9 5453 7043 411088083 411086500 0.000000e+00 2455.0
9 TraesCS2D01G262900 chr2A 89.112 1497 64 40 695 2160 411093320 411091892 0.000000e+00 1770.0
10 TraesCS2D01G262900 chr2A 90.949 453 28 7 7034 7478 411086335 411085888 1.440000e-166 597.0
11 TraesCS2D01G262900 chr2A 88.187 491 18 8 115 576 411109181 411108702 4.090000e-152 549.0
12 TraesCS2D01G262900 chr2A 93.191 235 16 0 7526 7760 411085780 411085546 5.760000e-91 346.0
13 TraesCS2D01G262900 chr2A 93.103 87 6 0 7473 7559 411085866 411085780 2.270000e-25 128.0
14 TraesCS2D01G262900 chr2A 97.619 42 1 0 574 615 411093541 411093500 1.080000e-08 73.1
15 TraesCS2D01G262900 chr2A 95.238 42 0 1 7721 7760 332598104 332598063 1.810000e-06 65.8
16 TraesCS2D01G262900 chrUn 100.000 397 0 0 4446 4842 479072354 479071958 0.000000e+00 734.0
17 TraesCS2D01G262900 chr7A 87.245 196 20 5 2134 2328 621568944 621569135 1.310000e-52 219.0
18 TraesCS2D01G262900 chr7A 79.181 293 43 10 7155 7444 64778534 64778811 3.700000e-43 187.0
19 TraesCS2D01G262900 chr7A 86.154 130 18 0 7627 7756 120999783 120999912 2.920000e-29 141.0
20 TraesCS2D01G262900 chr7A 100.000 33 0 0 7412 7444 292832653 292832685 2.340000e-05 62.1
21 TraesCS2D01G262900 chr5D 88.172 186 18 4 2134 2317 386689093 386689276 1.310000e-52 219.0
22 TraesCS2D01G262900 chr5D 80.800 250 38 7 7133 7379 28996159 28996401 3.700000e-43 187.0
23 TraesCS2D01G262900 chr5D 92.727 110 3 4 3 110 551830181 551830287 3.750000e-33 154.0
24 TraesCS2D01G262900 chr7D 87.097 186 19 4 2134 2317 51831082 51830900 1.020000e-48 206.0
25 TraesCS2D01G262900 chr7D 93.458 107 6 1 3 108 567487505 567487611 2.900000e-34 158.0
26 TraesCS2D01G262900 chr7D 81.875 160 22 6 7102 7258 266886756 266886911 2.270000e-25 128.0
27 TraesCS2D01G262900 chr3D 85.714 196 22 5 2125 2317 83491879 83492071 1.320000e-47 202.0
28 TraesCS2D01G262900 chr3D 94.545 110 6 0 1 110 361104509 361104400 3.720000e-38 171.0
29 TraesCS2D01G262900 chr3D 94.340 106 5 1 5 110 576811461 576811357 2.240000e-35 161.0
30 TraesCS2D01G262900 chr3A 90.000 150 14 1 2134 2283 177470015 177470163 7.950000e-45 193.0
31 TraesCS2D01G262900 chr3A 91.489 47 3 1 1535 1581 433952029 433952074 6.500000e-06 63.9
32 TraesCS2D01G262900 chr5B 85.792 183 22 3 2137 2317 445449868 445450048 2.860000e-44 191.0
33 TraesCS2D01G262900 chr5B 76.898 303 53 10 7162 7458 537924484 537924193 1.040000e-33 156.0
34 TraesCS2D01G262900 chr5B 81.061 132 20 5 7167 7296 709331579 709331707 4.950000e-17 100.0
35 TraesCS2D01G262900 chr7B 79.094 287 41 12 7184 7467 162085778 162086048 6.190000e-41 180.0
36 TraesCS2D01G262900 chr4D 79.044 272 42 13 7145 7413 97971739 97971480 1.040000e-38 172.0
37 TraesCS2D01G262900 chr5A 93.750 112 5 1 1 110 605331673 605331562 4.820000e-37 167.0
38 TraesCS2D01G262900 chr5A 77.593 241 34 15 7154 7385 687938381 687938152 2.270000e-25 128.0
39 TraesCS2D01G262900 chr5A 95.238 42 0 1 7721 7760 275448877 275448836 1.810000e-06 65.8
40 TraesCS2D01G262900 chr1D 94.495 109 5 1 3 110 387907586 387907694 4.820000e-37 167.0
41 TraesCS2D01G262900 chr1D 93.694 111 6 1 1 110 3555411 3555301 1.730000e-36 165.0
42 TraesCS2D01G262900 chr6D 93.578 109 6 1 3 110 141143312 141143204 2.240000e-35 161.0
43 TraesCS2D01G262900 chr6D 95.238 42 0 1 7721 7760 139249259 139249218 1.810000e-06 65.8
44 TraesCS2D01G262900 chr3B 92.174 115 8 1 1 115 722194569 722194456 2.240000e-35 161.0
45 TraesCS2D01G262900 chr6B 77.855 289 34 14 7150 7437 402200890 402201149 1.350000e-32 152.0
46 TraesCS2D01G262900 chr1B 85.185 135 18 2 7626 7760 626766477 626766345 3.780000e-28 137.0
47 TraesCS2D01G262900 chr4A 80.503 159 27 4 7104 7261 636669967 636669812 1.370000e-22 119.0
48 TraesCS2D01G262900 chr4A 95.238 42 0 1 7721 7760 348905532 348905491 1.810000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G262900 chr2D 320175180 320182939 7759 False 14331.000000 14331 100.000000 1 7760 1 chr2D.!!$F2 7759
1 TraesCS2D01G262900 chr2B 388112882 388122961 10079 False 3479.666667 7099 92.615000 115 7119 3 chr2B.!!$F2 7004
2 TraesCS2D01G262900 chr2A 411085546 411093541 7995 True 1527.442857 5323 93.558429 574 7760 7 chr2A.!!$R3 7186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.104409 ACCCCTTGTCACTCTCCCTT 60.104 55.000 0.00 0.0 0.00 3.95 F
93 94 0.462403 AATGAAATGCCGGCAATGCC 60.462 50.000 36.33 22.2 46.75 4.40 F
478 498 0.840722 TCTTCCTCCTCACCCAACCC 60.841 60.000 0.00 0.0 0.00 4.11 F
1121 1315 1.002087 TCGCAACTCTTCTTCCTTCCC 59.998 52.381 0.00 0.0 0.00 3.97 F
1443 1674 1.077716 GATGCCGGCCAAGTACCTT 60.078 57.895 26.77 0.0 0.00 3.50 F
3033 3621 0.106116 GGACCGGACTATCTCCTGGT 60.106 60.000 9.46 0.0 44.16 4.00 F
4028 4616 0.108186 ACGCGAGGAAGCATCAATGA 60.108 50.000 15.93 0.0 36.85 2.57 F
5360 5964 0.108615 CCGTACCAGCAAGACCTCAG 60.109 60.000 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1470 0.106708 ATGTTGTGAGTGTGAGCGGT 59.893 50.0 0.0 0.0 0.00 5.68 R
1243 1471 0.792640 GATGTTGTGAGTGTGAGCGG 59.207 55.0 0.0 0.0 0.00 5.52 R
1622 1861 0.966920 AGCAAGCAAAGCAGAAGCAT 59.033 45.0 0.0 0.0 45.49 3.79 R
2531 3117 0.975556 TACATGGCCCGAGCAAGAGA 60.976 55.0 0.0 0.0 42.56 3.10 R
3188 3776 0.107459 GTTGCTGGATCTCCACCTCC 60.107 60.0 0.0 0.0 42.01 4.30 R
4216 4807 0.108804 GAGAATCTGCGTCACCCGAA 60.109 55.0 0.0 0.0 39.56 4.30 R
5892 9739 0.533755 GGCCTCATCGTCATCCTTGG 60.534 60.0 0.0 0.0 0.00 3.61 R
7102 11144 0.035739 TTTTACTGTCCACCCGAGCC 59.964 55.0 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.342352 CGGAGCAGTTGTAATTTTCTCC 57.658 45.455 0.00 0.00 36.26 3.71
26 27 3.127030 CGGAGCAGTTGTAATTTTCTCCC 59.873 47.826 0.00 0.00 36.24 4.30
27 28 4.336280 GGAGCAGTTGTAATTTTCTCCCT 58.664 43.478 0.00 0.00 34.18 4.20
28 29 4.396478 GGAGCAGTTGTAATTTTCTCCCTC 59.604 45.833 0.00 0.00 34.18 4.30
29 30 5.248380 AGCAGTTGTAATTTTCTCCCTCT 57.752 39.130 0.00 0.00 0.00 3.69
30 31 5.635120 AGCAGTTGTAATTTTCTCCCTCTT 58.365 37.500 0.00 0.00 0.00 2.85
31 32 5.474876 AGCAGTTGTAATTTTCTCCCTCTTG 59.525 40.000 0.00 0.00 0.00 3.02
32 33 5.473504 GCAGTTGTAATTTTCTCCCTCTTGA 59.526 40.000 0.00 0.00 0.00 3.02
33 34 6.151817 GCAGTTGTAATTTTCTCCCTCTTGAT 59.848 38.462 0.00 0.00 0.00 2.57
34 35 7.627300 GCAGTTGTAATTTTCTCCCTCTTGATC 60.627 40.741 0.00 0.00 0.00 2.92
35 36 7.391554 CAGTTGTAATTTTCTCCCTCTTGATCA 59.608 37.037 0.00 0.00 0.00 2.92
36 37 7.391833 AGTTGTAATTTTCTCCCTCTTGATCAC 59.608 37.037 0.00 0.00 0.00 3.06
37 38 7.020827 TGTAATTTTCTCCCTCTTGATCACT 57.979 36.000 0.00 0.00 0.00 3.41
38 39 7.461749 TGTAATTTTCTCCCTCTTGATCACTT 58.538 34.615 0.00 0.00 0.00 3.16
39 40 6.830873 AATTTTCTCCCTCTTGATCACTTG 57.169 37.500 0.00 0.00 0.00 3.16
40 41 5.567037 TTTTCTCCCTCTTGATCACTTGA 57.433 39.130 0.00 0.00 0.00 3.02
41 42 5.768980 TTTCTCCCTCTTGATCACTTGAT 57.231 39.130 0.00 0.00 37.51 2.57
52 53 2.859165 TCACTTGATCACCCCTTGTC 57.141 50.000 0.00 0.00 0.00 3.18
53 54 2.054021 TCACTTGATCACCCCTTGTCA 58.946 47.619 0.00 0.00 0.00 3.58
54 55 2.154462 CACTTGATCACCCCTTGTCAC 58.846 52.381 0.00 0.00 0.00 3.67
55 56 2.057922 ACTTGATCACCCCTTGTCACT 58.942 47.619 0.00 0.00 0.00 3.41
56 57 2.039084 ACTTGATCACCCCTTGTCACTC 59.961 50.000 0.00 0.00 0.00 3.51
57 58 2.030027 TGATCACCCCTTGTCACTCT 57.970 50.000 0.00 0.00 0.00 3.24
58 59 1.902508 TGATCACCCCTTGTCACTCTC 59.097 52.381 0.00 0.00 0.00 3.20
59 60 1.208293 GATCACCCCTTGTCACTCTCC 59.792 57.143 0.00 0.00 0.00 3.71
60 61 0.836400 TCACCCCTTGTCACTCTCCC 60.836 60.000 0.00 0.00 0.00 4.30
61 62 0.838122 CACCCCTTGTCACTCTCCCT 60.838 60.000 0.00 0.00 0.00 4.20
62 63 0.104409 ACCCCTTGTCACTCTCCCTT 60.104 55.000 0.00 0.00 0.00 3.95
63 64 0.615850 CCCCTTGTCACTCTCCCTTC 59.384 60.000 0.00 0.00 0.00 3.46
64 65 1.650528 CCCTTGTCACTCTCCCTTCT 58.349 55.000 0.00 0.00 0.00 2.85
65 66 1.277557 CCCTTGTCACTCTCCCTTCTG 59.722 57.143 0.00 0.00 0.00 3.02
66 67 1.338579 CCTTGTCACTCTCCCTTCTGC 60.339 57.143 0.00 0.00 0.00 4.26
67 68 1.622811 CTTGTCACTCTCCCTTCTGCT 59.377 52.381 0.00 0.00 0.00 4.24
68 69 1.722034 TGTCACTCTCCCTTCTGCTT 58.278 50.000 0.00 0.00 0.00 3.91
69 70 2.889512 TGTCACTCTCCCTTCTGCTTA 58.110 47.619 0.00 0.00 0.00 3.09
70 71 3.239449 TGTCACTCTCCCTTCTGCTTAA 58.761 45.455 0.00 0.00 0.00 1.85
71 72 3.646162 TGTCACTCTCCCTTCTGCTTAAA 59.354 43.478 0.00 0.00 0.00 1.52
72 73 4.287067 TGTCACTCTCCCTTCTGCTTAAAT 59.713 41.667 0.00 0.00 0.00 1.40
73 74 4.873259 GTCACTCTCCCTTCTGCTTAAATC 59.127 45.833 0.00 0.00 0.00 2.17
74 75 4.532126 TCACTCTCCCTTCTGCTTAAATCA 59.468 41.667 0.00 0.00 0.00 2.57
75 76 5.013079 TCACTCTCCCTTCTGCTTAAATCAA 59.987 40.000 0.00 0.00 0.00 2.57
76 77 5.884792 CACTCTCCCTTCTGCTTAAATCAAT 59.115 40.000 0.00 0.00 0.00 2.57
77 78 5.884792 ACTCTCCCTTCTGCTTAAATCAATG 59.115 40.000 0.00 0.00 0.00 2.82
78 79 6.065976 TCTCCCTTCTGCTTAAATCAATGA 57.934 37.500 0.00 0.00 0.00 2.57
79 80 6.484288 TCTCCCTTCTGCTTAAATCAATGAA 58.516 36.000 0.00 0.00 0.00 2.57
80 81 6.947733 TCTCCCTTCTGCTTAAATCAATGAAA 59.052 34.615 0.00 0.00 0.00 2.69
81 82 7.616935 TCTCCCTTCTGCTTAAATCAATGAAAT 59.383 33.333 0.00 0.00 0.00 2.17
82 83 7.549839 TCCCTTCTGCTTAAATCAATGAAATG 58.450 34.615 0.00 0.00 0.00 2.32
83 84 6.257193 CCCTTCTGCTTAAATCAATGAAATGC 59.743 38.462 0.00 0.00 0.00 3.56
84 85 6.257193 CCTTCTGCTTAAATCAATGAAATGCC 59.743 38.462 0.00 0.00 0.00 4.40
85 86 5.342433 TCTGCTTAAATCAATGAAATGCCG 58.658 37.500 0.00 0.00 0.00 5.69
86 87 4.431809 TGCTTAAATCAATGAAATGCCGG 58.568 39.130 0.00 0.00 0.00 6.13
87 88 3.245990 GCTTAAATCAATGAAATGCCGGC 59.754 43.478 22.73 22.73 0.00 6.13
88 89 4.431809 CTTAAATCAATGAAATGCCGGCA 58.568 39.130 34.80 34.80 0.00 5.69
89 90 3.331478 AAATCAATGAAATGCCGGCAA 57.669 38.095 36.33 18.56 0.00 4.52
90 91 3.547054 AATCAATGAAATGCCGGCAAT 57.453 38.095 36.33 25.02 0.00 3.56
91 92 2.296831 TCAATGAAATGCCGGCAATG 57.703 45.000 36.33 23.22 0.00 2.82
92 93 0.653636 CAATGAAATGCCGGCAATGC 59.346 50.000 36.33 26.12 0.00 3.56
93 94 0.462403 AATGAAATGCCGGCAATGCC 60.462 50.000 36.33 22.20 46.75 4.40
104 105 3.746889 CAATGCCGGCCGCTTCAA 61.747 61.111 26.77 2.60 38.78 2.69
105 106 2.988684 AATGCCGGCCGCTTCAAA 60.989 55.556 26.77 1.65 38.78 2.69
106 107 2.569354 AATGCCGGCCGCTTCAAAA 61.569 52.632 26.77 0.73 38.78 2.44
107 108 2.093537 AATGCCGGCCGCTTCAAAAA 62.094 50.000 26.77 0.00 38.78 1.94
177 178 5.261216 TGGTGTGTGACAGACATAGAGATA 58.739 41.667 14.98 0.00 36.78 1.98
190 191 8.530311 CAGACATAGAGATATATCACTTGCCTT 58.470 37.037 16.46 0.70 0.00 4.35
194 195 6.992664 AGAGATATATCACTTGCCTTCAGT 57.007 37.500 15.08 0.00 0.00 3.41
202 217 0.887836 CTTGCCTTCAGTCTGCAGCA 60.888 55.000 9.47 0.00 36.21 4.41
203 218 0.887836 TTGCCTTCAGTCTGCAGCAG 60.888 55.000 17.10 17.10 36.21 4.24
366 386 1.826921 GCACCAGGCCAGATGGATG 60.827 63.158 16.13 10.98 40.51 3.51
371 391 2.236766 CCAGGCCAGATGGATGATTTC 58.763 52.381 5.01 0.00 40.51 2.17
372 392 2.423803 CCAGGCCAGATGGATGATTTCA 60.424 50.000 5.01 0.00 40.51 2.69
373 393 3.497332 CAGGCCAGATGGATGATTTCAT 58.503 45.455 5.01 0.00 39.70 2.57
374 394 3.895656 CAGGCCAGATGGATGATTTCATT 59.104 43.478 5.01 0.00 36.57 2.57
375 395 4.344102 CAGGCCAGATGGATGATTTCATTT 59.656 41.667 5.01 0.00 36.57 2.32
376 396 4.344102 AGGCCAGATGGATGATTTCATTTG 59.656 41.667 5.01 0.00 36.57 2.32
377 397 4.056050 GCCAGATGGATGATTTCATTTGC 58.944 43.478 2.18 0.00 36.57 3.68
378 398 4.442332 GCCAGATGGATGATTTCATTTGCA 60.442 41.667 2.18 0.00 36.57 4.08
379 399 5.289595 CCAGATGGATGATTTCATTTGCAG 58.710 41.667 0.00 0.00 36.57 4.41
380 400 5.289595 CAGATGGATGATTTCATTTGCAGG 58.710 41.667 0.00 0.00 36.57 4.85
381 401 5.068591 CAGATGGATGATTTCATTTGCAGGA 59.931 40.000 0.00 0.00 36.57 3.86
382 402 4.994907 TGGATGATTTCATTTGCAGGAG 57.005 40.909 0.00 0.00 36.57 3.69
383 403 3.131577 TGGATGATTTCATTTGCAGGAGC 59.868 43.478 0.00 0.00 36.57 4.70
384 404 3.131577 GGATGATTTCATTTGCAGGAGCA 59.868 43.478 0.00 0.00 42.50 4.26
385 405 4.360563 GATGATTTCATTTGCAGGAGCAG 58.639 43.478 0.00 0.00 43.95 4.24
386 406 5.262889 GATGATTTCATTTGCAGGAGCAGC 61.263 45.833 0.00 0.00 43.95 5.25
414 434 5.463061 CCACTAATTTTTGGACAAAGCACAG 59.537 40.000 0.00 0.00 34.46 3.66
422 442 1.135286 GGACAAAGCACAGCTAATGGC 60.135 52.381 8.82 6.02 38.25 4.40
448 468 4.792521 AGAAGACGCTGTCAGATTTAGT 57.207 40.909 3.32 0.00 34.60 2.24
467 487 6.696441 TTAGTATCGTCTTCTTCTTCCTCC 57.304 41.667 0.00 0.00 0.00 4.30
468 488 4.862371 AGTATCGTCTTCTTCTTCCTCCT 58.138 43.478 0.00 0.00 0.00 3.69
469 489 4.885325 AGTATCGTCTTCTTCTTCCTCCTC 59.115 45.833 0.00 0.00 0.00 3.71
470 490 3.156288 TCGTCTTCTTCTTCCTCCTCA 57.844 47.619 0.00 0.00 0.00 3.86
471 491 2.820787 TCGTCTTCTTCTTCCTCCTCAC 59.179 50.000 0.00 0.00 0.00 3.51
472 492 2.094442 CGTCTTCTTCTTCCTCCTCACC 60.094 54.545 0.00 0.00 0.00 4.02
473 493 2.235155 GTCTTCTTCTTCCTCCTCACCC 59.765 54.545 0.00 0.00 0.00 4.61
474 494 2.158158 TCTTCTTCTTCCTCCTCACCCA 60.158 50.000 0.00 0.00 0.00 4.51
475 495 2.415983 TCTTCTTCCTCCTCACCCAA 57.584 50.000 0.00 0.00 0.00 4.12
476 496 1.978580 TCTTCTTCCTCCTCACCCAAC 59.021 52.381 0.00 0.00 0.00 3.77
477 497 1.003696 CTTCTTCCTCCTCACCCAACC 59.996 57.143 0.00 0.00 0.00 3.77
478 498 0.840722 TCTTCCTCCTCACCCAACCC 60.841 60.000 0.00 0.00 0.00 4.11
479 499 1.073319 TTCCTCCTCACCCAACCCA 60.073 57.895 0.00 0.00 0.00 4.51
514 534 3.087781 GACGAGTAGTCCTACTGGGTTT 58.912 50.000 17.28 1.07 45.63 3.27
520 540 1.985895 AGTCCTACTGGGTTTGGAAGG 59.014 52.381 0.00 0.00 36.25 3.46
536 556 3.135167 TGGAAGGAGACACGTTTTTACCT 59.865 43.478 0.00 0.00 0.00 3.08
547 567 3.559655 ACGTTTTTACCTAACCCAACGAC 59.440 43.478 9.06 0.00 39.43 4.34
646 822 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
647 823 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
649 825 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
650 826 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
651 827 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
652 828 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
653 829 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
655 831 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
656 832 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
657 833 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
658 834 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
659 835 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
661 837 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
662 838 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
663 839 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
664 840 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
665 841 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
667 843 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
668 844 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
669 845 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
670 846 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
671 847 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
673 849 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
674 850 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
675 851 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
676 852 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
677 853 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
679 855 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
680 856 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
681 857 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
682 858 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
683 859 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
685 861 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
686 862 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
687 863 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
688 864 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
689 865 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
691 867 8.642908 ACACATACACATACACATACACATAC 57.357 34.615 0.00 0.00 0.00 2.39
692 868 8.474831 ACACATACACATACACATACACATACT 58.525 33.333 0.00 0.00 0.00 2.12
693 869 8.755018 CACATACACATACACATACACATACTG 58.245 37.037 0.00 0.00 0.00 2.74
694 870 7.438160 ACATACACATACACATACACATACTGC 59.562 37.037 0.00 0.00 0.00 4.40
695 871 5.729510 ACACATACACATACACATACTGCA 58.270 37.500 0.00 0.00 0.00 4.41
696 872 5.580691 ACACATACACATACACATACTGCAC 59.419 40.000 0.00 0.00 0.00 4.57
697 873 5.580297 CACATACACATACACATACTGCACA 59.420 40.000 0.00 0.00 0.00 4.57
698 874 6.258507 CACATACACATACACATACTGCACAT 59.741 38.462 0.00 0.00 0.00 3.21
699 875 7.437862 CACATACACATACACATACTGCACATA 59.562 37.037 0.00 0.00 0.00 2.29
700 876 7.438160 ACATACACATACACATACTGCACATAC 59.562 37.037 0.00 0.00 0.00 2.39
701 877 5.729510 ACACATACACATACTGCACATACA 58.270 37.500 0.00 0.00 0.00 2.29
702 878 6.348498 ACACATACACATACTGCACATACAT 58.652 36.000 0.00 0.00 0.00 2.29
940 1123 1.896660 GCACTGCCTGGAACGGAAA 60.897 57.895 0.00 0.00 36.31 3.13
1098 1291 1.348775 CCCCTCCTCCCCATTCTCAC 61.349 65.000 0.00 0.00 0.00 3.51
1121 1315 1.002087 TCGCAACTCTTCTTCCTTCCC 59.998 52.381 0.00 0.00 0.00 3.97
1122 1316 1.270839 CGCAACTCTTCTTCCTTCCCA 60.271 52.381 0.00 0.00 0.00 4.37
1136 1364 3.721706 CCCAGTCCCAGTCCCAGC 61.722 72.222 0.00 0.00 0.00 4.85
1242 1470 4.100084 CCATGCCCCTCACGCTCA 62.100 66.667 0.00 0.00 0.00 4.26
1243 1471 2.821366 CATGCCCCTCACGCTCAC 60.821 66.667 0.00 0.00 0.00 3.51
1244 1472 4.101448 ATGCCCCTCACGCTCACC 62.101 66.667 0.00 0.00 0.00 4.02
1248 1476 4.803426 CCCTCACGCTCACCGCTC 62.803 72.222 0.00 0.00 41.76 5.03
1249 1477 4.056125 CCTCACGCTCACCGCTCA 62.056 66.667 0.00 0.00 41.76 4.26
1250 1478 2.807045 CTCACGCTCACCGCTCAC 60.807 66.667 0.00 0.00 41.76 3.51
1251 1479 3.558099 CTCACGCTCACCGCTCACA 62.558 63.158 0.00 0.00 41.76 3.58
1252 1480 3.406361 CACGCTCACCGCTCACAC 61.406 66.667 0.00 0.00 41.76 3.82
1253 1481 3.606662 ACGCTCACCGCTCACACT 61.607 61.111 0.00 0.00 41.76 3.55
1254 1482 2.807045 CGCTCACCGCTCACACTC 60.807 66.667 0.00 0.00 36.13 3.51
1297 1525 4.814041 GCTGGCTCCCCTCCTCCT 62.814 72.222 0.00 0.00 0.00 3.69
1349 1577 1.451028 GCTGAGCTGGTAGCAAGGG 60.451 63.158 0.00 0.00 45.56 3.95
1350 1578 1.222936 CTGAGCTGGTAGCAAGGGG 59.777 63.158 0.00 0.00 45.56 4.79
1351 1579 1.229496 TGAGCTGGTAGCAAGGGGA 60.229 57.895 0.00 0.00 45.56 4.81
1352 1580 1.267574 TGAGCTGGTAGCAAGGGGAG 61.268 60.000 0.00 0.00 45.56 4.30
1353 1581 1.977293 GAGCTGGTAGCAAGGGGAGG 61.977 65.000 0.00 0.00 45.56 4.30
1377 1605 1.370414 CGGTCGGTTTGCTTTGCTG 60.370 57.895 0.00 0.00 0.00 4.41
1443 1674 1.077716 GATGCCGGCCAAGTACCTT 60.078 57.895 26.77 0.00 0.00 3.50
1444 1675 1.376609 GATGCCGGCCAAGTACCTTG 61.377 60.000 26.77 0.00 40.75 3.61
1622 1861 4.697756 CTTCCTTCCCGCCGCACA 62.698 66.667 0.00 0.00 0.00 4.57
1674 1924 2.985896 GGATTCATTCCGTCTCACCAA 58.014 47.619 0.00 0.00 33.93 3.67
1675 1925 3.545703 GGATTCATTCCGTCTCACCAAT 58.454 45.455 0.00 0.00 33.93 3.16
1676 1926 3.947834 GGATTCATTCCGTCTCACCAATT 59.052 43.478 0.00 0.00 33.93 2.32
1677 1927 4.035675 GGATTCATTCCGTCTCACCAATTC 59.964 45.833 0.00 0.00 33.93 2.17
1678 1928 2.985896 TCATTCCGTCTCACCAATTCC 58.014 47.619 0.00 0.00 0.00 3.01
1679 1929 2.571653 TCATTCCGTCTCACCAATTCCT 59.428 45.455 0.00 0.00 0.00 3.36
1696 1946 7.619302 ACCAATTCCTATTCCTTGAAGCAATTA 59.381 33.333 0.00 0.00 0.00 1.40
1697 1947 7.922811 CCAATTCCTATTCCTTGAAGCAATTAC 59.077 37.037 0.00 0.00 0.00 1.89
1698 1948 6.677781 TTCCTATTCCTTGAAGCAATTACG 57.322 37.500 0.00 0.00 0.00 3.18
1699 1949 5.741011 TCCTATTCCTTGAAGCAATTACGT 58.259 37.500 0.00 0.00 0.00 3.57
1763 2019 1.747924 GGGCTCTGCTTTTGGAAGATC 59.252 52.381 0.00 0.00 34.71 2.75
1787 2043 1.140652 AGATCAGGGCTCTGCTTTAGC 59.859 52.381 9.36 0.00 40.69 3.09
1890 2146 3.200958 TCTACTGTAGCCTTTTCCCCT 57.799 47.619 9.98 0.00 0.00 4.79
1975 2232 2.239654 TGGAGGCAGAGGGAAGTTTATG 59.760 50.000 0.00 0.00 0.00 1.90
2302 2884 7.945134 ACTTGGTTAAGTCTTAGTCGAGTAAA 58.055 34.615 13.50 3.13 43.53 2.01
2312 2894 5.655532 TCTTAGTCGAGTAAAACCTAGCCAT 59.344 40.000 13.50 0.00 0.00 4.40
2440 3025 6.433847 TCTTCTTCTTTGGTGATAGTTCCA 57.566 37.500 0.00 0.00 0.00 3.53
2496 3081 7.818930 ACAATGACAGTGACATTTTTGTTTCTT 59.181 29.630 16.57 0.00 36.07 2.52
2531 3117 8.891671 AATGCAACAGTATTGATCAACTTTTT 57.108 26.923 11.07 0.00 0.00 1.94
2582 3168 6.015095 CCATAAGAAGCAATATTTCCCCCTTC 60.015 42.308 0.00 0.00 0.00 3.46
2621 3209 1.969923 TGCATTTGTTTAGGCTGGCTT 59.030 42.857 9.68 0.00 0.00 4.35
2637 3225 4.846779 TGGCTTACCATTGAAAACTGTC 57.153 40.909 0.00 0.00 42.67 3.51
2697 3285 2.978824 GTAGGGGAAGAGCGCACA 59.021 61.111 11.47 0.00 0.00 4.57
2836 3424 6.547510 ACAAGAACTTCAGTAAAAGCTGGATT 59.452 34.615 0.00 0.00 37.12 3.01
2914 3502 2.775418 TCCTCCCTTGATGGCAATAGA 58.225 47.619 0.00 0.00 32.68 1.98
3025 3613 2.431057 GAGTGACAATGGACCGGACTAT 59.569 50.000 9.46 1.39 0.00 2.12
3033 3621 0.106116 GGACCGGACTATCTCCTGGT 60.106 60.000 9.46 0.00 44.16 4.00
3052 3640 2.224670 GGTTGATACCCTCACCAACACA 60.225 50.000 0.00 0.00 40.26 3.72
3076 3664 1.927527 AGCTCAATCCAGCCACCCT 60.928 57.895 0.00 0.00 40.65 4.34
3164 3752 2.951269 TCCACAATGGAAGCAGCAG 58.049 52.632 0.00 0.00 45.00 4.24
3173 3761 0.964358 GGAAGCAGCAGTGGCAGATT 60.964 55.000 0.00 0.00 44.61 2.40
3186 3774 3.063452 GTGGCAGATTACACATACAACCG 59.937 47.826 0.00 0.00 37.54 4.44
3187 3775 3.267483 GGCAGATTACACATACAACCGT 58.733 45.455 0.00 0.00 0.00 4.83
3188 3776 3.063452 GGCAGATTACACATACAACCGTG 59.937 47.826 0.00 0.00 39.10 4.94
3189 3777 3.063452 GCAGATTACACATACAACCGTGG 59.937 47.826 0.00 0.00 37.45 4.94
3190 3778 4.500127 CAGATTACACATACAACCGTGGA 58.500 43.478 0.00 0.00 37.45 4.02
3191 3779 4.566759 CAGATTACACATACAACCGTGGAG 59.433 45.833 0.00 0.00 37.45 3.86
3373 3961 2.605823 CGATGCTCCTCGGTTCTCATAC 60.606 54.545 0.00 0.00 35.03 2.39
3399 3987 2.091541 GAGGGAATCGGCATCAAAACA 58.908 47.619 0.00 0.00 0.00 2.83
3454 4042 3.162154 GGCCCTCTTAGGACCCGG 61.162 72.222 0.00 0.00 37.67 5.73
3496 4084 2.274437 CCGAACATGGATGACACAGAG 58.726 52.381 0.00 0.00 0.00 3.35
3504 4092 3.357203 TGGATGACACAGAGAGGAGTAC 58.643 50.000 0.00 0.00 0.00 2.73
3556 4144 3.681897 CAGAGATCCAGAAAGAACAACCG 59.318 47.826 0.00 0.00 0.00 4.44
3662 4250 2.568090 CGCAGGCACCCAAATCAC 59.432 61.111 0.00 0.00 0.00 3.06
3796 4384 3.244596 ACTCTAAGTTCCCAGCTGAAACC 60.245 47.826 17.39 0.00 0.00 3.27
3997 4585 3.058293 CGATGCAAGCAAAAGGACTGTTA 60.058 43.478 0.00 0.00 0.00 2.41
4028 4616 0.108186 ACGCGAGGAAGCATCAATGA 60.108 50.000 15.93 0.00 36.85 2.57
4114 4702 6.558771 TGTAACACAAACTCCAATCAGATG 57.441 37.500 0.00 0.00 0.00 2.90
4162 4753 2.677337 GGAAGAAGAGAGCATTGCAGAC 59.323 50.000 11.91 2.07 0.00 3.51
4207 4798 3.131577 TGATCATGAAGCCTGCAAATTCC 59.868 43.478 0.00 0.00 0.00 3.01
4218 4809 3.011949 TGCAAATTCCGCAGACTTTTC 57.988 42.857 0.00 0.00 33.55 2.29
4297 4888 2.263077 CGGACAGTCAATAGCACTGAC 58.737 52.381 8.03 6.46 43.54 3.51
4332 4923 1.978454 AAGATCAATAGGGCAGCTGC 58.022 50.000 30.88 30.88 41.14 5.25
4419 5010 6.015940 AGACCAAATGGAAGAAATGAAGTGAC 60.016 38.462 6.42 0.00 38.94 3.67
4849 5440 5.957842 AAGTTAATGCATCGAACTTCCAA 57.042 34.783 23.99 0.00 38.70 3.53
4912 5503 8.870075 AAGTGGTAAGCTATTTCTTCTTTCAT 57.130 30.769 0.00 0.00 0.00 2.57
5261 5865 2.227388 GCAAACAAGGACCTGTCATCTG 59.773 50.000 0.00 0.00 0.00 2.90
5360 5964 0.108615 CCGTACCAGCAAGACCTCAG 60.109 60.000 0.00 0.00 0.00 3.35
5506 9353 7.712797 TGGAAAGATCTTAAAAGTTGTTCACC 58.287 34.615 8.75 0.00 0.00 4.02
5562 9409 3.377346 CGGAGGATCATGAATCTCGTT 57.623 47.619 17.11 0.00 36.25 3.85
5652 9499 5.726793 AGTACCTTTGGTCCACAGATAGAAT 59.273 40.000 6.60 0.00 37.09 2.40
5774 9621 6.582672 GCTAATTTCTTTTTCCTTGGAACTCG 59.417 38.462 0.98 0.00 0.00 4.18
5892 9739 3.077359 AGCTCCAGCAATTGACTGTAAC 58.923 45.455 20.87 13.04 45.16 2.50
6049 9896 2.859273 AAATCCAGCTCCACGCCTCG 62.859 60.000 0.00 0.00 40.39 4.63
6145 9992 2.613977 CGTCCATCAAAGCAGAAGGTCT 60.614 50.000 0.00 0.00 0.00 3.85
6208 10055 0.820226 TGAACATGCTCCTCCTCGAG 59.180 55.000 5.13 5.13 0.00 4.04
6325 10172 3.942115 CAGAGATCGAGTACCTGAAGACA 59.058 47.826 0.00 0.00 0.00 3.41
6554 10401 4.087892 GCAGGAGGCGCCTCTTCA 62.088 66.667 45.55 0.00 46.97 3.02
6634 10487 0.036732 GTGAGGATTGAGTGTGGGCA 59.963 55.000 0.00 0.00 0.00 5.36
6666 10519 4.675190 CTCAAGTAGGAGTGCATGTTTG 57.325 45.455 0.00 0.00 0.00 2.93
6743 10603 1.822990 ACGGCGTTTCTCTCTGGAATA 59.177 47.619 6.77 0.00 0.00 1.75
6756 10616 6.763135 TCTCTCTGGAATATAATTGTGTGTGC 59.237 38.462 0.00 0.00 0.00 4.57
6785 10645 7.546358 TGAACTCAAATAATCGCATGGATTTT 58.454 30.769 12.69 4.97 42.77 1.82
6864 10724 7.050970 AGACAATTATAAGTGTATGCGGAGA 57.949 36.000 17.81 0.00 37.34 3.71
6870 10730 2.130272 AGTGTATGCGGAGACTGAGA 57.870 50.000 2.72 0.00 0.00 3.27
6960 10825 3.321682 ACATTTGGGATTTCACTGTGGTG 59.678 43.478 8.11 0.00 44.23 4.17
7102 11144 4.898829 TGAAAGTGTTGTTCTCACATGG 57.101 40.909 0.00 0.00 38.16 3.66
7121 11163 0.035739 GGCTCGGGTGGACAGTAAAA 59.964 55.000 0.00 0.00 0.00 1.52
7122 11164 1.543871 GGCTCGGGTGGACAGTAAAAA 60.544 52.381 0.00 0.00 0.00 1.94
7218 11261 6.091169 GCAAAATTCCATCATGAAACGACATT 59.909 34.615 0.00 0.00 0.00 2.71
7220 11263 4.598406 TTCCATCATGAAACGACATTCG 57.402 40.909 0.00 0.00 46.93 3.34
7248 11291 7.758980 GGAAAACATGGCAAAGAAAACAAAATT 59.241 29.630 0.00 0.00 0.00 1.82
7264 11307 5.064558 ACAAAATTGATGCTCCAAAATGCA 58.935 33.333 0.00 0.00 43.67 3.96
7282 11325 4.590400 TGCATTTGAAAACACCGTTTTG 57.410 36.364 9.42 0.00 0.00 2.44
7289 11332 3.118956 TGAAAACACCGTTTTGGAGCATT 60.119 39.130 9.42 0.00 42.00 3.56
7327 11372 1.234821 TGGCACATTTTCCACGAGTC 58.765 50.000 0.00 0.00 0.00 3.36
7391 11437 8.034215 TGACAATGTTTCACACAGAAGAAAAAT 58.966 29.630 0.00 0.00 39.40 1.82
7392 11438 8.188531 ACAATGTTTCACACAGAAGAAAAATG 57.811 30.769 0.00 0.00 39.40 2.32
7393 11439 7.278424 ACAATGTTTCACACAGAAGAAAAATGG 59.722 33.333 0.00 0.00 39.40 3.16
7394 11440 6.522625 TGTTTCACACAGAAGAAAAATGGA 57.477 33.333 0.00 0.00 37.57 3.41
7465 11512 1.702299 CGATCAGAACAACCGCGTC 59.298 57.895 4.92 0.00 0.00 5.19
7472 11519 2.827959 GAACAACCGCGTCCGCATTC 62.828 60.000 12.58 3.69 42.06 2.67
7478 11525 0.232303 CCGCGTCCGCATTCTTTATC 59.768 55.000 12.58 0.00 42.06 1.75
7549 11623 7.147976 TGATGATTATCAACCATCTCAGTACG 58.852 38.462 0.00 0.00 40.26 3.67
7608 11715 1.272536 ACTAGCGGTCTTCTTCCTCCA 60.273 52.381 0.00 0.00 0.00 3.86
7615 11722 4.833390 CGGTCTTCTTCCTCCAGTTTTAT 58.167 43.478 0.00 0.00 0.00 1.40
7625 11732 2.945668 CTCCAGTTTTATGCCACTAGCC 59.054 50.000 0.00 0.00 42.71 3.93
7652 11759 3.300066 CGACGAACGACAATCTTTAGGAC 59.700 47.826 0.14 0.00 45.77 3.85
7674 11781 1.908299 CAAGGCCCCTTGGTGGTTC 60.908 63.158 17.40 0.00 46.88 3.62
7679 11786 2.672996 CCCTTGGTGGTTCGGCTG 60.673 66.667 0.00 0.00 0.00 4.85
7688 11795 1.002624 GGTTCGGCTGTGGGAATCA 60.003 57.895 0.00 0.00 0.00 2.57
7700 11807 4.749245 GTGGGAATCACAGTACACAAAG 57.251 45.455 0.00 0.00 45.39 2.77
7711 11818 4.202357 ACAGTACACAAAGAGCAGATCCAA 60.202 41.667 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.559238 AAATTACAACTGCTCCGCAAG 57.441 42.857 0.00 0.00 38.41 4.01
1 2 3.568007 AGAAAATTACAACTGCTCCGCAA 59.432 39.130 0.00 0.00 38.41 4.85
2 3 3.146066 AGAAAATTACAACTGCTCCGCA 58.854 40.909 0.00 0.00 36.92 5.69
3 4 3.426292 GGAGAAAATTACAACTGCTCCGC 60.426 47.826 0.00 0.00 32.15 5.54
4 5 3.127030 GGGAGAAAATTACAACTGCTCCG 59.873 47.826 0.00 0.00 40.95 4.63
5 6 4.336280 AGGGAGAAAATTACAACTGCTCC 58.664 43.478 0.00 0.00 39.68 4.70
6 7 5.249420 AGAGGGAGAAAATTACAACTGCTC 58.751 41.667 0.00 0.00 0.00 4.26
7 8 5.248380 AGAGGGAGAAAATTACAACTGCT 57.752 39.130 0.00 0.00 0.00 4.24
8 9 5.473504 TCAAGAGGGAGAAAATTACAACTGC 59.526 40.000 0.00 0.00 0.00 4.40
9 10 7.391554 TGATCAAGAGGGAGAAAATTACAACTG 59.608 37.037 0.00 0.00 0.00 3.16
10 11 7.391833 GTGATCAAGAGGGAGAAAATTACAACT 59.608 37.037 0.00 0.00 0.00 3.16
11 12 7.391833 AGTGATCAAGAGGGAGAAAATTACAAC 59.608 37.037 0.00 0.00 0.00 3.32
12 13 7.461749 AGTGATCAAGAGGGAGAAAATTACAA 58.538 34.615 0.00 0.00 0.00 2.41
13 14 7.020827 AGTGATCAAGAGGGAGAAAATTACA 57.979 36.000 0.00 0.00 0.00 2.41
14 15 7.607991 TCAAGTGATCAAGAGGGAGAAAATTAC 59.392 37.037 0.00 0.00 0.00 1.89
15 16 7.689299 TCAAGTGATCAAGAGGGAGAAAATTA 58.311 34.615 0.00 0.00 0.00 1.40
16 17 6.546484 TCAAGTGATCAAGAGGGAGAAAATT 58.454 36.000 0.00 0.00 0.00 1.82
17 18 6.131972 TCAAGTGATCAAGAGGGAGAAAAT 57.868 37.500 0.00 0.00 0.00 1.82
18 19 5.567037 TCAAGTGATCAAGAGGGAGAAAA 57.433 39.130 0.00 0.00 0.00 2.29
19 20 5.768980 ATCAAGTGATCAAGAGGGAGAAA 57.231 39.130 0.00 0.00 0.00 2.52
32 33 2.644299 TGACAAGGGGTGATCAAGTGAT 59.356 45.455 0.00 0.00 37.51 3.06
33 34 2.054021 TGACAAGGGGTGATCAAGTGA 58.946 47.619 0.00 0.00 0.00 3.41
34 35 2.154462 GTGACAAGGGGTGATCAAGTG 58.846 52.381 0.00 0.00 0.00 3.16
35 36 2.039084 GAGTGACAAGGGGTGATCAAGT 59.961 50.000 0.00 0.00 0.00 3.16
36 37 2.304180 AGAGTGACAAGGGGTGATCAAG 59.696 50.000 0.00 0.00 0.00 3.02
37 38 2.303022 GAGAGTGACAAGGGGTGATCAA 59.697 50.000 0.00 0.00 0.00 2.57
38 39 1.902508 GAGAGTGACAAGGGGTGATCA 59.097 52.381 0.00 0.00 0.00 2.92
39 40 1.208293 GGAGAGTGACAAGGGGTGATC 59.792 57.143 0.00 0.00 0.00 2.92
40 41 1.280457 GGAGAGTGACAAGGGGTGAT 58.720 55.000 0.00 0.00 0.00 3.06
41 42 0.836400 GGGAGAGTGACAAGGGGTGA 60.836 60.000 0.00 0.00 0.00 4.02
42 43 0.838122 AGGGAGAGTGACAAGGGGTG 60.838 60.000 0.00 0.00 0.00 4.61
43 44 0.104409 AAGGGAGAGTGACAAGGGGT 60.104 55.000 0.00 0.00 0.00 4.95
44 45 0.615850 GAAGGGAGAGTGACAAGGGG 59.384 60.000 0.00 0.00 0.00 4.79
45 46 1.277557 CAGAAGGGAGAGTGACAAGGG 59.722 57.143 0.00 0.00 0.00 3.95
46 47 1.338579 GCAGAAGGGAGAGTGACAAGG 60.339 57.143 0.00 0.00 0.00 3.61
47 48 1.622811 AGCAGAAGGGAGAGTGACAAG 59.377 52.381 0.00 0.00 0.00 3.16
48 49 1.722034 AGCAGAAGGGAGAGTGACAA 58.278 50.000 0.00 0.00 0.00 3.18
49 50 1.722034 AAGCAGAAGGGAGAGTGACA 58.278 50.000 0.00 0.00 0.00 3.58
50 51 3.963428 TTAAGCAGAAGGGAGAGTGAC 57.037 47.619 0.00 0.00 0.00 3.67
51 52 4.532126 TGATTTAAGCAGAAGGGAGAGTGA 59.468 41.667 0.00 0.00 0.00 3.41
52 53 4.836825 TGATTTAAGCAGAAGGGAGAGTG 58.163 43.478 0.00 0.00 0.00 3.51
53 54 5.505181 TTGATTTAAGCAGAAGGGAGAGT 57.495 39.130 0.00 0.00 0.00 3.24
54 55 6.118170 TCATTGATTTAAGCAGAAGGGAGAG 58.882 40.000 0.00 0.00 0.00 3.20
55 56 6.065976 TCATTGATTTAAGCAGAAGGGAGA 57.934 37.500 0.00 0.00 0.00 3.71
56 57 6.764308 TTCATTGATTTAAGCAGAAGGGAG 57.236 37.500 0.00 0.00 0.00 4.30
57 58 7.549839 CATTTCATTGATTTAAGCAGAAGGGA 58.450 34.615 0.00 0.00 0.00 4.20
58 59 6.257193 GCATTTCATTGATTTAAGCAGAAGGG 59.743 38.462 0.00 0.00 0.00 3.95
59 60 6.257193 GGCATTTCATTGATTTAAGCAGAAGG 59.743 38.462 0.00 0.00 0.00 3.46
60 61 6.020121 CGGCATTTCATTGATTTAAGCAGAAG 60.020 38.462 0.00 0.00 0.00 2.85
61 62 5.806502 CGGCATTTCATTGATTTAAGCAGAA 59.193 36.000 0.00 0.00 0.00 3.02
62 63 5.342433 CGGCATTTCATTGATTTAAGCAGA 58.658 37.500 0.00 0.00 0.00 4.26
63 64 4.505191 CCGGCATTTCATTGATTTAAGCAG 59.495 41.667 0.00 0.00 0.00 4.24
64 65 4.431809 CCGGCATTTCATTGATTTAAGCA 58.568 39.130 0.00 0.00 0.00 3.91
65 66 3.245990 GCCGGCATTTCATTGATTTAAGC 59.754 43.478 24.80 0.00 0.00 3.09
66 67 4.431809 TGCCGGCATTTCATTGATTTAAG 58.568 39.130 29.03 0.00 0.00 1.85
67 68 4.462508 TGCCGGCATTTCATTGATTTAA 57.537 36.364 29.03 0.00 0.00 1.52
68 69 4.462508 TTGCCGGCATTTCATTGATTTA 57.537 36.364 33.25 7.34 0.00 1.40
69 70 3.331478 TTGCCGGCATTTCATTGATTT 57.669 38.095 33.25 0.00 0.00 2.17
70 71 3.199677 CATTGCCGGCATTTCATTGATT 58.800 40.909 33.25 0.00 0.00 2.57
71 72 2.828877 CATTGCCGGCATTTCATTGAT 58.171 42.857 33.25 15.64 0.00 2.57
72 73 1.739707 GCATTGCCGGCATTTCATTGA 60.740 47.619 33.25 13.66 0.00 2.57
73 74 0.653636 GCATTGCCGGCATTTCATTG 59.346 50.000 33.25 20.35 0.00 2.82
74 75 0.462403 GGCATTGCCGGCATTTCATT 60.462 50.000 33.25 8.34 39.62 2.57
75 76 1.144496 GGCATTGCCGGCATTTCAT 59.856 52.632 33.25 18.62 39.62 2.57
76 77 2.578128 GGCATTGCCGGCATTTCA 59.422 55.556 33.25 16.81 39.62 2.69
131 132 7.031975 CCATTTCTTCTCCTTTAAATCTGCAC 58.968 38.462 0.00 0.00 0.00 4.57
140 141 5.763204 GTCACACACCATTTCTTCTCCTTTA 59.237 40.000 0.00 0.00 0.00 1.85
177 178 3.054875 TGCAGACTGAAGGCAAGTGATAT 60.055 43.478 6.65 0.00 34.05 1.63
190 191 3.463345 TGCTCTGCTGCAGACTGA 58.537 55.556 27.35 16.18 35.39 3.41
356 376 5.270893 TGCAAATGAAATCATCCATCTGG 57.729 39.130 0.00 0.00 35.10 3.86
387 407 4.802583 GCTTTGTCCAAAAATTAGTGGGGG 60.803 45.833 7.33 0.00 35.46 5.40
388 408 4.202305 TGCTTTGTCCAAAAATTAGTGGGG 60.202 41.667 7.33 0.00 35.46 4.96
389 409 4.749598 GTGCTTTGTCCAAAAATTAGTGGG 59.250 41.667 7.33 0.00 35.46 4.61
402 422 1.135286 GCCATTAGCTGTGCTTTGTCC 60.135 52.381 0.00 0.00 40.44 4.02
414 434 1.063174 CGTCTTCTTGCAGCCATTAGC 59.937 52.381 0.00 0.00 44.25 3.09
422 442 0.788995 CTGACAGCGTCTTCTTGCAG 59.211 55.000 9.49 0.00 33.15 4.41
424 444 1.719600 ATCTGACAGCGTCTTCTTGC 58.280 50.000 0.00 0.00 33.15 4.01
448 468 4.641094 GTGAGGAGGAAGAAGAAGACGATA 59.359 45.833 0.00 0.00 0.00 2.92
467 487 1.112916 GTTGGGTTGGGTTGGGTGAG 61.113 60.000 0.00 0.00 0.00 3.51
468 488 1.075896 GTTGGGTTGGGTTGGGTGA 60.076 57.895 0.00 0.00 0.00 4.02
469 489 2.137528 GGTTGGGTTGGGTTGGGTG 61.138 63.158 0.00 0.00 0.00 4.61
470 490 2.284151 GGTTGGGTTGGGTTGGGT 59.716 61.111 0.00 0.00 0.00 4.51
471 491 2.525629 GGGTTGGGTTGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
472 492 1.383248 TTGGGTTGGGTTGGGTTGG 60.383 57.895 0.00 0.00 0.00 3.77
473 493 0.689412 AGTTGGGTTGGGTTGGGTTG 60.689 55.000 0.00 0.00 0.00 3.77
474 494 0.689412 CAGTTGGGTTGGGTTGGGTT 60.689 55.000 0.00 0.00 0.00 4.11
475 495 1.075600 CAGTTGGGTTGGGTTGGGT 60.076 57.895 0.00 0.00 0.00 4.51
476 496 1.112916 GTCAGTTGGGTTGGGTTGGG 61.113 60.000 0.00 0.00 0.00 4.12
477 497 1.452145 CGTCAGTTGGGTTGGGTTGG 61.452 60.000 0.00 0.00 0.00 3.77
478 498 0.464735 TCGTCAGTTGGGTTGGGTTG 60.465 55.000 0.00 0.00 0.00 3.77
479 499 0.179029 CTCGTCAGTTGGGTTGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
509 529 0.108019 ACGTGTCTCCTTCCAAACCC 59.892 55.000 0.00 0.00 0.00 4.11
514 534 3.135167 AGGTAAAAACGTGTCTCCTTCCA 59.865 43.478 0.00 0.00 0.00 3.53
520 540 4.379652 TGGGTTAGGTAAAAACGTGTCTC 58.620 43.478 0.00 0.00 0.00 3.36
536 556 3.118334 TGAAGAGTTTGGTCGTTGGGTTA 60.118 43.478 0.00 0.00 0.00 2.85
547 567 2.656947 TGGGGAAGTGAAGAGTTTGG 57.343 50.000 0.00 0.00 0.00 3.28
647 823 9.738832 GTATGTGTATGTGTATGTGTATGTGTA 57.261 33.333 0.00 0.00 0.00 2.90
648 824 8.254508 TGTATGTGTATGTGTATGTGTATGTGT 58.745 33.333 0.00 0.00 0.00 3.72
649 825 8.539674 GTGTATGTGTATGTGTATGTGTATGTG 58.460 37.037 0.00 0.00 0.00 3.21
650 826 8.254508 TGTGTATGTGTATGTGTATGTGTATGT 58.745 33.333 0.00 0.00 0.00 2.29
651 827 8.641499 TGTGTATGTGTATGTGTATGTGTATG 57.359 34.615 0.00 0.00 0.00 2.39
653 829 9.738832 GTATGTGTATGTGTATGTGTATGTGTA 57.261 33.333 0.00 0.00 0.00 2.90
654 830 8.254508 TGTATGTGTATGTGTATGTGTATGTGT 58.745 33.333 0.00 0.00 0.00 3.72
655 831 8.539674 GTGTATGTGTATGTGTATGTGTATGTG 58.460 37.037 0.00 0.00 0.00 3.21
656 832 8.254508 TGTGTATGTGTATGTGTATGTGTATGT 58.745 33.333 0.00 0.00 0.00 2.29
657 833 8.641499 TGTGTATGTGTATGTGTATGTGTATG 57.359 34.615 0.00 0.00 0.00 2.39
659 835 9.738832 GTATGTGTATGTGTATGTGTATGTGTA 57.261 33.333 0.00 0.00 0.00 2.90
660 836 8.254508 TGTATGTGTATGTGTATGTGTATGTGT 58.745 33.333 0.00 0.00 0.00 3.72
661 837 8.539674 GTGTATGTGTATGTGTATGTGTATGTG 58.460 37.037 0.00 0.00 0.00 3.21
662 838 8.254508 TGTGTATGTGTATGTGTATGTGTATGT 58.745 33.333 0.00 0.00 0.00 2.29
663 839 8.641499 TGTGTATGTGTATGTGTATGTGTATG 57.359 34.615 0.00 0.00 0.00 2.39
665 841 9.738832 GTATGTGTATGTGTATGTGTATGTGTA 57.261 33.333 0.00 0.00 0.00 2.90
666 842 8.474831 AGTATGTGTATGTGTATGTGTATGTGT 58.525 33.333 0.00 0.00 0.00 3.72
667 843 8.755018 CAGTATGTGTATGTGTATGTGTATGTG 58.245 37.037 0.00 0.00 0.00 3.21
668 844 7.438160 GCAGTATGTGTATGTGTATGTGTATGT 59.562 37.037 0.00 0.00 39.31 2.29
669 845 7.437862 TGCAGTATGTGTATGTGTATGTGTATG 59.562 37.037 0.00 0.00 39.31 2.39
670 846 7.438160 GTGCAGTATGTGTATGTGTATGTGTAT 59.562 37.037 0.00 0.00 39.31 2.29
671 847 6.754675 GTGCAGTATGTGTATGTGTATGTGTA 59.245 38.462 0.00 0.00 39.31 2.90
672 848 5.580691 GTGCAGTATGTGTATGTGTATGTGT 59.419 40.000 0.00 0.00 39.31 3.72
673 849 5.580297 TGTGCAGTATGTGTATGTGTATGTG 59.420 40.000 0.00 0.00 39.31 3.21
674 850 5.729510 TGTGCAGTATGTGTATGTGTATGT 58.270 37.500 0.00 0.00 39.31 2.29
675 851 6.849588 ATGTGCAGTATGTGTATGTGTATG 57.150 37.500 0.00 0.00 39.31 2.39
676 852 7.496747 TGTATGTGCAGTATGTGTATGTGTAT 58.503 34.615 0.00 0.00 39.31 2.29
677 853 6.868622 TGTATGTGCAGTATGTGTATGTGTA 58.131 36.000 0.00 0.00 39.31 2.90
678 854 5.729510 TGTATGTGCAGTATGTGTATGTGT 58.270 37.500 0.00 0.00 39.31 3.72
679 855 6.849588 ATGTATGTGCAGTATGTGTATGTG 57.150 37.500 0.00 0.00 39.31 3.21
680 856 9.639601 GTATATGTATGTGCAGTATGTGTATGT 57.360 33.333 0.00 0.00 39.31 2.29
681 857 9.638239 TGTATATGTATGTGCAGTATGTGTATG 57.362 33.333 0.00 0.00 39.31 2.39
682 858 9.639601 GTGTATATGTATGTGCAGTATGTGTAT 57.360 33.333 0.00 0.00 39.31 2.29
683 859 8.634444 TGTGTATATGTATGTGCAGTATGTGTA 58.366 33.333 0.00 0.00 39.31 2.90
684 860 7.496747 TGTGTATATGTATGTGCAGTATGTGT 58.503 34.615 0.00 0.00 39.31 3.72
685 861 7.945033 TGTGTATATGTATGTGCAGTATGTG 57.055 36.000 0.00 0.00 39.31 3.21
686 862 9.639601 GTATGTGTATATGTATGTGCAGTATGT 57.360 33.333 0.00 0.00 39.31 2.29
687 863 9.638239 TGTATGTGTATATGTATGTGCAGTATG 57.362 33.333 0.00 0.00 40.87 2.39
688 864 9.639601 GTGTATGTGTATATGTATGTGCAGTAT 57.360 33.333 0.00 0.00 0.00 2.12
689 865 8.634444 TGTGTATGTGTATATGTATGTGCAGTA 58.366 33.333 0.00 0.00 0.00 2.74
690 866 7.496747 TGTGTATGTGTATATGTATGTGCAGT 58.503 34.615 0.00 0.00 0.00 4.40
691 867 7.945033 TGTGTATGTGTATATGTATGTGCAG 57.055 36.000 0.00 0.00 0.00 4.41
692 868 9.418045 GTATGTGTATGTGTATATGTATGTGCA 57.582 33.333 0.00 0.00 0.00 4.57
693 869 9.418045 TGTATGTGTATGTGTATATGTATGTGC 57.582 33.333 0.00 0.00 0.00 4.57
699 875 9.574516 TCTCTCTGTATGTGTATGTGTATATGT 57.425 33.333 0.00 0.00 0.00 2.29
702 878 9.793259 TCATCTCTCTGTATGTGTATGTGTATA 57.207 33.333 0.00 0.00 0.00 1.47
845 1023 3.391665 GAGGAGATGTGGGTGGGCG 62.392 68.421 0.00 0.00 0.00 6.13
940 1123 1.298953 AGTGTATTGGGACCTGGCAT 58.701 50.000 0.00 0.00 0.00 4.40
1098 1291 0.610687 AGGAAGAAGAGTTGCGAGGG 59.389 55.000 0.00 0.00 0.00 4.30
1121 1315 3.721706 GGGCTGGGACTGGGACTG 61.722 72.222 0.00 0.00 0.00 3.51
1136 1364 1.830477 GCTCTATCTCTATGGCTGGGG 59.170 57.143 0.00 0.00 0.00 4.96
1242 1470 0.106708 ATGTTGTGAGTGTGAGCGGT 59.893 50.000 0.00 0.00 0.00 5.68
1243 1471 0.792640 GATGTTGTGAGTGTGAGCGG 59.207 55.000 0.00 0.00 0.00 5.52
1244 1472 1.723542 GAGATGTTGTGAGTGTGAGCG 59.276 52.381 0.00 0.00 0.00 5.03
1245 1473 2.072298 GGAGATGTTGTGAGTGTGAGC 58.928 52.381 0.00 0.00 0.00 4.26
1246 1474 3.674528 AGGAGATGTTGTGAGTGTGAG 57.325 47.619 0.00 0.00 0.00 3.51
1247 1475 3.643320 AGAAGGAGATGTTGTGAGTGTGA 59.357 43.478 0.00 0.00 0.00 3.58
1248 1476 3.744942 CAGAAGGAGATGTTGTGAGTGTG 59.255 47.826 0.00 0.00 0.00 3.82
1249 1477 3.805108 GCAGAAGGAGATGTTGTGAGTGT 60.805 47.826 0.00 0.00 0.00 3.55
1250 1478 2.740981 GCAGAAGGAGATGTTGTGAGTG 59.259 50.000 0.00 0.00 0.00 3.51
1251 1479 2.289945 GGCAGAAGGAGATGTTGTGAGT 60.290 50.000 0.00 0.00 0.00 3.41
1252 1480 2.354259 GGCAGAAGGAGATGTTGTGAG 58.646 52.381 0.00 0.00 0.00 3.51
1253 1481 1.003580 GGGCAGAAGGAGATGTTGTGA 59.996 52.381 0.00 0.00 0.00 3.58
1254 1482 1.457346 GGGCAGAAGGAGATGTTGTG 58.543 55.000 0.00 0.00 0.00 3.33
1295 1523 7.452880 TCAATCATGGTCTTTTCTTGTAAGG 57.547 36.000 0.00 0.00 0.00 2.69
1296 1524 7.025963 GCTCAATCATGGTCTTTTCTTGTAAG 58.974 38.462 0.00 0.00 0.00 2.34
1297 1525 6.716628 AGCTCAATCATGGTCTTTTCTTGTAA 59.283 34.615 0.00 0.00 0.00 2.41
1377 1605 3.160748 GCAGGGAGGAGGAGGAGC 61.161 72.222 0.00 0.00 0.00 4.70
1443 1674 4.382541 TCCTCTCCCAGCGCCTCA 62.383 66.667 2.29 0.00 0.00 3.86
1444 1675 3.844090 GTCCTCTCCCAGCGCCTC 61.844 72.222 2.29 0.00 0.00 4.70
1622 1861 0.966920 AGCAAGCAAAGCAGAAGCAT 59.033 45.000 0.00 0.00 45.49 3.79
1674 1924 6.828785 ACGTAATTGCTTCAAGGAATAGGAAT 59.171 34.615 4.33 0.00 35.10 3.01
1675 1925 6.177610 ACGTAATTGCTTCAAGGAATAGGAA 58.822 36.000 4.33 0.00 35.10 3.36
1676 1926 5.741011 ACGTAATTGCTTCAAGGAATAGGA 58.259 37.500 4.33 0.00 35.10 2.94
1677 1927 6.292168 CGTACGTAATTGCTTCAAGGAATAGG 60.292 42.308 4.33 0.38 35.10 2.57
1678 1928 6.255020 ACGTACGTAATTGCTTCAAGGAATAG 59.745 38.462 21.41 2.82 35.10 1.73
1679 1929 6.101332 ACGTACGTAATTGCTTCAAGGAATA 58.899 36.000 21.41 0.00 35.10 1.75
1696 1946 3.547468 GGCATACGAACATTAACGTACGT 59.453 43.478 16.72 16.72 45.25 3.57
1697 1947 3.547068 TGGCATACGAACATTAACGTACG 59.453 43.478 15.01 15.01 45.25 3.67
1698 1948 4.259930 GGTGGCATACGAACATTAACGTAC 60.260 45.833 0.00 0.00 45.25 3.67
1699 1949 3.864583 GGTGGCATACGAACATTAACGTA 59.135 43.478 0.00 0.00 46.18 3.57
1763 2019 1.255882 AGCAGAGCCCTGATCTATCG 58.744 55.000 0.00 0.00 43.02 2.92
1867 2123 3.492829 GGGGAAAAGGCTACAGTAGATCG 60.493 52.174 12.15 0.00 0.00 3.69
2300 2882 2.093128 CAGACGGGTATGGCTAGGTTTT 60.093 50.000 0.00 0.00 0.00 2.43
2302 2884 1.120530 CAGACGGGTATGGCTAGGTT 58.879 55.000 0.00 0.00 0.00 3.50
2312 2894 4.603989 TGTCAACATTTACAGACGGGTA 57.396 40.909 0.00 0.00 33.83 3.69
2531 3117 0.975556 TACATGGCCCGAGCAAGAGA 60.976 55.000 0.00 0.00 42.56 3.10
2582 3168 7.900782 AATGCATTGAATCCTCAAAAAGAAG 57.099 32.000 12.09 0.00 44.64 2.85
2621 3209 7.506114 AGTAAGTGAGACAGTTTTCAATGGTA 58.494 34.615 0.00 0.00 0.00 3.25
2633 3221 5.297547 TGCCTGTTTTAGTAAGTGAGACAG 58.702 41.667 0.00 0.00 34.38 3.51
2637 3225 5.048782 TGCATTGCCTGTTTTAGTAAGTGAG 60.049 40.000 6.12 0.00 0.00 3.51
2673 3261 1.453379 CTCTTCCCCTACGCTCGGA 60.453 63.158 0.00 0.00 0.00 4.55
2697 3285 2.478292 ACAATCTGGGGTCCGTATCTT 58.522 47.619 0.00 0.00 0.00 2.40
2836 3424 4.891627 TGACGTTGCTCTTTGATTTTCA 57.108 36.364 0.00 0.00 0.00 2.69
2914 3502 4.222124 GGATAGGTCCTGTTGTGTTGAT 57.778 45.455 0.00 0.00 41.60 2.57
3025 3613 5.443254 TGGTGAGGGTATCAACCAGGAGA 62.443 52.174 0.00 0.00 45.83 3.71
3033 3621 2.224670 GGTGTGTTGGTGAGGGTATCAA 60.225 50.000 0.00 0.00 40.43 2.57
3052 3640 1.606531 GCTGGATTGAGCTGAGGGT 59.393 57.895 0.00 0.00 35.95 4.34
3162 3750 4.094887 GGTTGTATGTGTAATCTGCCACTG 59.905 45.833 0.00 0.00 32.76 3.66
3163 3751 4.261801 GGTTGTATGTGTAATCTGCCACT 58.738 43.478 0.00 0.00 32.76 4.00
3164 3752 3.063452 CGGTTGTATGTGTAATCTGCCAC 59.937 47.826 0.00 0.00 0.00 5.01
3173 3761 2.028839 CACCTCCACGGTTGTATGTGTA 60.029 50.000 0.00 0.00 46.37 2.90
3186 3774 1.267574 TGCTGGATCTCCACCTCCAC 61.268 60.000 0.00 0.00 42.01 4.02
3187 3775 0.547471 TTGCTGGATCTCCACCTCCA 60.547 55.000 0.00 0.00 42.01 3.86
3188 3776 0.107459 GTTGCTGGATCTCCACCTCC 60.107 60.000 0.00 0.00 42.01 4.30
3189 3777 0.615331 TGTTGCTGGATCTCCACCTC 59.385 55.000 0.00 0.00 42.01 3.85
3190 3778 1.064906 CATGTTGCTGGATCTCCACCT 60.065 52.381 0.00 0.00 42.01 4.00
3191 3779 1.386533 CATGTTGCTGGATCTCCACC 58.613 55.000 0.00 0.00 42.01 4.61
3373 3961 4.587189 GCCGATTCCCTCCCGTCG 62.587 72.222 0.00 0.00 0.00 5.12
3399 3987 3.244353 CGACAATCTTGGCATCTCCCTAT 60.244 47.826 0.00 0.00 35.35 2.57
3454 4042 3.202706 GGCCGCGAGTCCATTTCC 61.203 66.667 8.23 0.00 0.00 3.13
3496 4084 4.065789 CAGAACCAAAACTGGTACTCCTC 58.934 47.826 0.00 0.00 42.20 3.71
3504 4092 7.039784 TGGATTCTTTATCAGAACCAAAACTGG 60.040 37.037 0.00 0.00 44.70 4.00
3556 4144 0.808060 GAAGACGCTTAGAGGCTGCC 60.808 60.000 11.65 11.65 0.00 4.85
3646 4234 0.244721 GAAGTGATTTGGGTGCCTGC 59.755 55.000 0.00 0.00 0.00 4.85
3662 4250 4.384056 TGTTCTTGCTTCCTCTCTTGAAG 58.616 43.478 0.00 0.00 41.70 3.02
3796 4384 1.172180 TTTCCTGCTTCCAAGGTGCG 61.172 55.000 0.00 0.00 0.00 5.34
3997 4585 1.202486 TCCTCGCGTTTCTTGTTCTGT 60.202 47.619 5.77 0.00 0.00 3.41
4114 4702 2.597903 GATGGGGCCCCTTCAGAC 59.402 66.667 39.60 21.34 39.30 3.51
4207 4798 1.860078 GTCACCCGAAAAGTCTGCG 59.140 57.895 0.00 0.00 0.00 5.18
4216 4807 0.108804 GAGAATCTGCGTCACCCGAA 60.109 55.000 0.00 0.00 39.56 4.30
4218 4809 1.519455 GGAGAATCTGCGTCACCCG 60.519 63.158 0.00 0.00 35.55 5.28
4297 4888 6.864360 TTGATCTTTGGCATTTTCCTTTTG 57.136 33.333 0.00 0.00 0.00 2.44
4332 4923 4.489810 ACTAGATTTCAGACGTTGCTCAG 58.510 43.478 0.00 0.00 0.00 3.35
4419 5010 2.447244 AGACTTCTGTTTCCTGCTCG 57.553 50.000 0.00 0.00 0.00 5.03
4842 5433 3.706086 AGTTTGATTGCCTTGTTGGAAGT 59.294 39.130 0.00 0.00 38.35 3.01
4849 5440 2.949447 AGTGGAGTTTGATTGCCTTGT 58.051 42.857 0.00 0.00 0.00 3.16
4912 5503 9.494271 CTTTTCTCGATGAATGGAAGGATAATA 57.506 33.333 0.00 0.00 34.24 0.98
5261 5865 2.435586 AGCTGCTGCGTGATCCAC 60.436 61.111 10.14 0.00 45.42 4.02
5360 5964 7.254932 GCTGATCTTACCAACATTAGGTGAATC 60.255 40.741 0.00 0.00 40.26 2.52
5506 9353 4.690748 TGAAATGTCGAAGCAGGAAGTAAG 59.309 41.667 0.00 0.00 0.00 2.34
5562 9409 8.882736 CAACAAGCATGATAGTGAGTAAACATA 58.117 33.333 0.00 0.00 0.00 2.29
5652 9499 7.701539 AAGATGCCACTATGTAAACATGAAA 57.298 32.000 0.00 0.00 37.15 2.69
5774 9621 0.603172 AGATGCCGCTGATCATCTGC 60.603 55.000 6.45 6.45 45.37 4.26
5793 9640 4.618927 GCTTTGTTGGCTTTGCATCTGATA 60.619 41.667 0.00 0.00 0.00 2.15
5892 9739 0.533755 GGCCTCATCGTCATCCTTGG 60.534 60.000 0.00 0.00 0.00 3.61
6049 9896 0.111253 CAGGATTGATGGGGTAGCCC 59.889 60.000 23.81 23.81 44.51 5.19
6145 9992 1.228894 AGCTCTCTTGGGGTCGTCA 60.229 57.895 0.00 0.00 0.00 4.35
6208 10055 4.575236 ACCGAGGTTTCTTTCTCAAACTTC 59.425 41.667 0.00 0.00 36.80 3.01
6325 10172 1.361993 GCACATCCGCGATCTCTCT 59.638 57.895 8.23 0.00 0.00 3.10
6578 10425 1.898472 TCCTCTCTTCAGACAAGCCAG 59.102 52.381 0.00 0.00 0.00 4.85
6634 10487 4.042187 ACTCCTACTTGAGGTTTCTGCATT 59.958 41.667 0.00 0.00 46.76 3.56
6666 10519 3.264964 TGGAATAACAAGGTAGGTGTCCC 59.735 47.826 0.00 0.00 0.00 4.46
6721 10581 1.801913 CCAGAGAGAAACGCCGTCG 60.802 63.158 0.00 0.00 42.43 5.12
6743 10603 5.764686 TGAGTTCAGAAGCACACACAATTAT 59.235 36.000 0.00 0.00 0.00 1.28
6756 10616 6.037500 TCCATGCGATTATTTGAGTTCAGAAG 59.962 38.462 0.00 0.00 0.00 2.85
6864 10724 5.296780 ACATTTGATCACACGTTTTCTCAGT 59.703 36.000 0.00 0.00 0.00 3.41
6870 10730 5.005586 CAGCAAACATTTGATCACACGTTTT 59.994 36.000 3.44 0.00 40.55 2.43
6905 10770 9.823098 GAAAATATGTACAGAGATGATCAATGC 57.177 33.333 0.00 0.00 0.00 3.56
6937 10802 3.321682 ACCACAGTGAAATCCCAAATGTG 59.678 43.478 0.62 0.00 36.53 3.21
6960 10825 3.751479 AGGGTTTTGAACTGGAAATGC 57.249 42.857 0.00 0.00 0.00 3.56
7102 11144 0.035739 TTTTACTGTCCACCCGAGCC 59.964 55.000 0.00 0.00 0.00 4.70
7185 11228 6.509656 TCATGATGGAATTTTGCAAGCTATC 58.490 36.000 0.00 4.91 30.51 2.08
7218 11261 2.302260 TCTTTGCCATGTTTTCCACGA 58.698 42.857 0.00 0.00 0.00 4.35
7220 11263 4.633565 TGTTTTCTTTGCCATGTTTTCCAC 59.366 37.500 0.00 0.00 0.00 4.02
7264 11307 3.868661 GCTCCAAAACGGTGTTTTCAAAT 59.131 39.130 4.77 0.00 35.57 2.32
7276 11319 7.760131 ATATCAAAATCAATGCTCCAAAACG 57.240 32.000 0.00 0.00 0.00 3.60
7414 11461 6.233434 TGTGAGCTCAGATGAACAGTAAAAT 58.767 36.000 18.89 0.00 0.00 1.82
7443 11490 1.416049 CGGTTGTTCTGATCGCGTG 59.584 57.895 5.77 0.00 0.00 5.34
7444 11491 2.380410 GCGGTTGTTCTGATCGCGT 61.380 57.895 5.77 0.00 37.12 6.01
7447 11494 1.683790 GGACGCGGTTGTTCTGATCG 61.684 60.000 12.47 0.00 0.00 3.69
7465 11512 7.219484 AGAAAATATGGGATAAAGAATGCGG 57.781 36.000 0.00 0.00 0.00 5.69
7537 11611 4.631377 TGCTTTTTCATCGTACTGAGATGG 59.369 41.667 8.73 0.00 44.04 3.51
7543 11617 6.252441 TGTGTTTTTGCTTTTTCATCGTACTG 59.748 34.615 0.00 0.00 0.00 2.74
7544 11618 6.252655 GTGTGTTTTTGCTTTTTCATCGTACT 59.747 34.615 0.00 0.00 0.00 2.73
7549 11623 7.201140 CGTTTTGTGTGTTTTTGCTTTTTCATC 60.201 33.333 0.00 0.00 0.00 2.92
7608 11715 2.356135 CACGGCTAGTGGCATAAAACT 58.644 47.619 0.00 0.00 46.77 2.66
7635 11742 4.710324 TGTTGGTCCTAAAGATTGTCGTT 58.290 39.130 0.00 0.00 0.00 3.85
7679 11786 4.385825 TCTTTGTGTACTGTGATTCCCAC 58.614 43.478 0.00 0.00 45.88 4.61
7688 11795 3.324846 TGGATCTGCTCTTTGTGTACTGT 59.675 43.478 0.00 0.00 0.00 3.55
7700 11807 4.515191 TGTGTTTACTTGTTGGATCTGCTC 59.485 41.667 0.00 0.00 0.00 4.26
7711 11818 7.875327 AGGTAAATCTTGTGTGTTTACTTGT 57.125 32.000 0.00 0.00 38.03 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.