Multiple sequence alignment - TraesCS2D01G262800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G262800 chr2D 100.000 5429 0 0 1 5429 320157710 320163138 0.000000e+00 10026.0
1 TraesCS2D01G262800 chr2D 83.190 464 55 18 50 497 488224271 488224727 2.360000e-108 403.0
2 TraesCS2D01G262800 chr2D 79.365 189 29 10 105 289 60075856 60076038 2.050000e-24 124.0
3 TraesCS2D01G262800 chr2B 94.248 5198 183 50 1 5128 388101946 388107097 0.000000e+00 7836.0
4 TraesCS2D01G262800 chr2A 95.161 4794 161 18 664 5429 411127072 411122322 0.000000e+00 7502.0
5 TraesCS2D01G262800 chr6A 81.221 639 54 38 48 647 399719302 399718691 6.410000e-124 455.0
6 TraesCS2D01G262800 chr4A 80.844 616 54 33 45 622 632736807 632737396 5.030000e-115 425.0
7 TraesCS2D01G262800 chr4A 86.087 115 11 4 180 290 730678777 730678664 9.550000e-23 119.0
8 TraesCS2D01G262800 chr5A 78.584 579 88 23 2 551 323259751 323260322 3.110000e-92 350.0
9 TraesCS2D01G262800 chr3D 84.191 272 32 7 1 268 559262317 559262581 2.510000e-63 254.0
10 TraesCS2D01G262800 chr3D 78.981 157 26 7 372 525 547459357 547459205 3.460000e-17 100.0
11 TraesCS2D01G262800 chr6B 79.874 159 21 10 374 526 32794049 32794202 7.440000e-19 106.0
12 TraesCS2D01G262800 chrUn 79.487 156 20 12 379 525 35803625 35803777 3.460000e-17 100.0
13 TraesCS2D01G262800 chr3B 76.119 201 30 14 355 543 790741852 790742046 7.490000e-14 89.8
14 TraesCS2D01G262800 chr3A 92.188 64 4 1 180 243 552476566 552476628 7.490000e-14 89.8
15 TraesCS2D01G262800 chr4D 83.696 92 13 2 105 195 417385814 417385724 9.690000e-13 86.1
16 TraesCS2D01G262800 chr7D 87.671 73 8 1 180 252 631600275 631600346 3.480000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G262800 chr2D 320157710 320163138 5428 False 10026 10026 100.000 1 5429 1 chr2D.!!$F2 5428
1 TraesCS2D01G262800 chr2B 388101946 388107097 5151 False 7836 7836 94.248 1 5128 1 chr2B.!!$F1 5127
2 TraesCS2D01G262800 chr2A 411122322 411127072 4750 True 7502 7502 95.161 664 5429 1 chr2A.!!$R1 4765
3 TraesCS2D01G262800 chr6A 399718691 399719302 611 True 455 455 81.221 48 647 1 chr6A.!!$R1 599
4 TraesCS2D01G262800 chr4A 632736807 632737396 589 False 425 425 80.844 45 622 1 chr4A.!!$F1 577
5 TraesCS2D01G262800 chr5A 323259751 323260322 571 False 350 350 78.584 2 551 1 chr5A.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 558 0.040204 CCAGGGCTGAAACCTTCCAT 59.960 55.0 0.00 0.00 35.78 3.41 F
579 642 0.175073 GGCCCAGTCGTACACTTAGG 59.825 60.0 0.00 1.15 30.26 2.69 F
1536 1624 0.322187 GCCACGGGTAAATCAGGTGT 60.322 55.0 0.00 0.00 0.00 4.16 F
2146 2234 0.754217 ATGCTTTGGGAGATGCGCAT 60.754 50.0 25.66 25.66 39.39 4.73 F
3434 3529 0.260816 AGCTAGGGGTATGGTCGTCA 59.739 55.0 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 1982 0.541863 CGCCCTTCCCATCTGTACTT 59.458 55.0 0.00 0.0 0.00 2.24 R
2056 2144 0.947660 CATCAGACACAGCAGCACGT 60.948 55.0 0.00 0.0 0.00 4.49 R
3106 3194 3.487372 CGATCCTCCTGGTGAGTACATA 58.513 50.0 0.00 0.0 39.65 2.29 R
4043 4141 2.287915 GGGCTTAGCATCAACACATACG 59.712 50.0 6.53 0.0 0.00 3.06 R
5244 5364 0.037605 GCTGCCAGCTTTGCTTTCAT 60.038 50.0 10.04 0.0 36.40 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.362430 TGAAACTACCCAAAAAGCTGAACAT 59.638 36.000 0.00 0.00 0.00 2.71
147 150 9.480538 CAGAACAAAATTTGAAAACATGAACAG 57.519 29.630 13.19 0.00 0.00 3.16
165 168 6.829703 TGAACAGTGTTTGAAATTTGCAAAG 58.170 32.000 18.19 1.73 36.06 2.77
178 181 9.903682 TGAAATTTGCAAAGAATTTTTGAAACA 57.096 22.222 18.19 4.53 35.03 2.83
292 300 6.706295 ACTCCCAAACAAGATTTGAAAACAA 58.294 32.000 0.98 0.00 0.00 2.83
509 558 0.040204 CCAGGGCTGAAACCTTCCAT 59.960 55.000 0.00 0.00 35.78 3.41
513 562 2.649816 AGGGCTGAAACCTTCCATAAGT 59.350 45.455 0.00 0.00 33.64 2.24
515 564 3.444034 GGGCTGAAACCTTCCATAAGTTC 59.556 47.826 0.00 0.00 0.00 3.01
555 605 7.753309 ATCTACACGTTAGATAGCTCTGATT 57.247 36.000 14.61 0.00 32.91 2.57
575 638 3.379445 CCGGCCCAGTCGTACACT 61.379 66.667 0.00 0.00 34.67 3.55
576 639 2.654877 CGGCCCAGTCGTACACTT 59.345 61.111 0.00 0.00 30.26 3.16
577 640 1.597797 CCGGCCCAGTCGTACACTTA 61.598 60.000 0.00 0.00 30.26 2.24
578 641 0.179145 CGGCCCAGTCGTACACTTAG 60.179 60.000 0.00 0.00 30.26 2.18
579 642 0.175073 GGCCCAGTCGTACACTTAGG 59.825 60.000 0.00 1.15 30.26 2.69
580 643 0.893447 GCCCAGTCGTACACTTAGGT 59.107 55.000 0.00 0.00 30.26 3.08
610 673 2.348666 GCTGTATGCGTTACCTCAACAG 59.651 50.000 0.00 0.00 36.92 3.16
611 674 3.585862 CTGTATGCGTTACCTCAACAGT 58.414 45.455 0.00 0.00 36.92 3.55
649 712 8.543774 AGAGCGTCATATATAGGAAATTCCAAT 58.456 33.333 15.21 7.21 39.61 3.16
1260 1328 2.974692 AAATGCGTGTGTCCCTGGCA 62.975 55.000 0.00 0.00 38.09 4.92
1320 1408 0.543646 AATGCTTTGCTTCCTGCCCT 60.544 50.000 0.00 0.00 42.00 5.19
1364 1452 4.370364 TCTGTCTTTGTTTTCCTTGTGC 57.630 40.909 0.00 0.00 0.00 4.57
1390 1478 1.066605 GGAGAAAGCGTGTATAGCCGA 59.933 52.381 0.00 0.00 34.64 5.54
1424 1512 1.834263 CTTCTACAGGGAAGGGGACAG 59.166 57.143 0.00 0.00 39.05 3.51
1445 1533 1.827681 GGACAGGGAAAAGAAGCCTC 58.172 55.000 0.00 0.00 0.00 4.70
1536 1624 0.322187 GCCACGGGTAAATCAGGTGT 60.322 55.000 0.00 0.00 0.00 4.16
1562 1650 1.004277 GCACTGATGGGGAAGGTGTTA 59.996 52.381 0.00 0.00 0.00 2.41
1685 1773 1.244019 ATCCGGAGTTGGCTGCAAAC 61.244 55.000 11.34 11.99 32.11 2.93
1843 1931 6.071952 GGAATAAGAACAAGCAAGAACCATCA 60.072 38.462 0.00 0.00 0.00 3.07
1966 2054 3.201708 CCAGAAATGGAGAGGGTCAAGAT 59.798 47.826 0.00 0.00 0.00 2.40
2143 2231 1.266175 GATGATGCTTTGGGAGATGCG 59.734 52.381 0.00 0.00 0.00 4.73
2146 2234 0.754217 ATGCTTTGGGAGATGCGCAT 60.754 50.000 25.66 25.66 39.39 4.73
2161 2249 2.910987 CGCATGTTAGTATGAGCACG 57.089 50.000 0.00 0.00 0.00 5.34
2307 2395 2.749076 GTGCTGTTGTGGCAGATGAATA 59.251 45.455 0.00 0.00 40.54 1.75
2313 2401 5.015515 TGTTGTGGCAGATGAATATGGAAA 58.984 37.500 0.00 0.00 0.00 3.13
2578 2666 2.529632 AGAGGTGCTGATGTCACTACA 58.470 47.619 0.00 0.00 40.69 2.74
2724 2812 2.579860 AGCAAGATCAATCCCCTTCTGT 59.420 45.455 0.00 0.00 0.00 3.41
3336 3424 8.286097 GGATCGGAATTTCTATCTCATCAAAAC 58.714 37.037 0.00 0.00 0.00 2.43
3434 3529 0.260816 AGCTAGGGGTATGGTCGTCA 59.739 55.000 0.00 0.00 0.00 4.35
3487 3582 6.428159 ACACCTCTTCACTTGACATGATTTAC 59.572 38.462 0.00 0.00 0.00 2.01
3610 3705 5.534654 GCTGGGTAAGTAATGGAAATGCATA 59.465 40.000 0.00 0.00 0.00 3.14
3645 3740 7.544804 ACTTCTAATCTCTGGCCAAATTTTT 57.455 32.000 7.01 0.00 0.00 1.94
3692 3788 0.971386 ATTGCAAGAAAGCCAGGTGG 59.029 50.000 4.94 0.00 38.53 4.61
3798 3894 5.422214 TTCTGGAGTTACTCTGAAATCCC 57.578 43.478 12.41 0.00 41.82 3.85
4043 4141 2.094390 TGTACCCTGCTCGTATTGTGTC 60.094 50.000 0.00 0.00 0.00 3.67
4080 4178 2.928334 AGCCCATCTGTTGCTATTCAG 58.072 47.619 0.00 0.00 32.56 3.02
4497 4595 3.181467 TGTTGGATGGCAGAAAGTTTTGG 60.181 43.478 0.00 0.00 0.00 3.28
4550 4648 3.935203 CAGTTGGCATGACTACTTGTAGG 59.065 47.826 13.36 0.00 0.00 3.18
4565 4663 1.009799 TGTAGGCAGGGGGTATTGGTA 59.990 52.381 0.00 0.00 0.00 3.25
4599 4697 6.746745 TTTTTACTCTCTGTTGTTTCGGTT 57.253 33.333 0.00 0.00 0.00 4.44
4604 4702 2.096819 TCTCTGTTGTTTCGGTTTGTGC 59.903 45.455 0.00 0.00 0.00 4.57
4631 4732 4.017775 TCCTGAAGTAGTCAAGGCTAGGTA 60.018 45.833 0.00 0.00 35.22 3.08
4632 4733 4.339814 CCTGAAGTAGTCAAGGCTAGGTAG 59.660 50.000 0.00 0.00 35.22 3.18
4633 4734 4.931914 TGAAGTAGTCAAGGCTAGGTAGT 58.068 43.478 0.00 0.00 31.51 2.73
4675 4776 9.661563 CCTATTACTTCACATGTACTTTGGTTA 57.338 33.333 0.00 0.00 0.00 2.85
4786 4904 6.770785 TGTTGTAAGGATGTTAGAGTTTTGCT 59.229 34.615 0.00 0.00 0.00 3.91
4796 4914 3.990318 AGAGTTTTGCTGGCTTGTAAC 57.010 42.857 0.00 0.00 0.00 2.50
4802 4920 3.726291 TTGCTGGCTTGTAACTTTTCC 57.274 42.857 0.00 0.00 0.00 3.13
4859 4977 8.804743 CATTTGTTGAACTATAGTACTGTACCG 58.195 37.037 14.05 3.95 0.00 4.02
4866 4984 3.746045 ATAGTACTGTACCGCCAATGG 57.254 47.619 14.05 0.00 0.00 3.16
4871 4989 1.243902 CTGTACCGCCAATGGTGTTT 58.756 50.000 12.29 0.77 43.68 2.83
4880 4998 4.441356 CCGCCAATGGTGTTTATAATTGCT 60.441 41.667 12.29 0.00 0.00 3.91
5186 5306 3.196469 TGAAGTGCTTATCCTGACCTGAG 59.804 47.826 0.00 0.00 0.00 3.35
5258 5378 2.494471 TGGATGGATGAAAGCAAAGCTG 59.506 45.455 0.00 0.00 39.62 4.24
5259 5379 2.159142 GGATGGATGAAAGCAAAGCTGG 60.159 50.000 0.00 0.00 39.62 4.85
5274 5394 1.461559 GCTGGCAGCTGAAATCTTCT 58.538 50.000 31.37 0.00 38.45 2.85
5301 5421 2.621338 ACACTGTTGTGATGATAGCCG 58.379 47.619 3.03 0.00 46.55 5.52
5322 5442 3.736252 CGAAATCTCGTCACTCAAGTGTT 59.264 43.478 9.82 0.00 40.42 3.32
5326 5446 6.570672 AATCTCGTCACTCAAGTGTTAGTA 57.429 37.500 9.82 0.00 45.76 1.82
5402 5522 2.424601 ACTGCATATTCACACACATGGC 59.575 45.455 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 6.645700 TTTGAAAAGTTGTTCATGTTCAGC 57.354 33.333 0.00 0.00 37.36 4.26
28 29 9.883142 ATGTTCCTATTTTTGAAAAGTTGTTCA 57.117 25.926 0.00 0.00 35.72 3.18
147 150 9.940518 CAAAAATTCTTTGCAAATTTCAAACAC 57.059 25.926 13.23 0.00 35.75 3.32
165 168 9.965748 TCGAAAAATGTTCTGTTTCAAAAATTC 57.034 25.926 0.00 0.00 32.00 2.17
178 181 4.131596 TCGGGAGTTTCGAAAAATGTTCT 58.868 39.130 13.10 4.05 33.42 3.01
345 372 8.409371 TGTGCTTGTTCAATATTTCACAACTAA 58.591 29.630 5.45 0.00 31.31 2.24
346 373 7.935520 TGTGCTTGTTCAATATTTCACAACTA 58.064 30.769 5.45 0.00 31.31 2.24
447 495 4.826556 CTTCTAGAAGGTTCCTGAACAGG 58.173 47.826 22.67 14.01 42.85 4.00
509 558 2.164338 GCATCCGGTTTTGGGAACTTA 58.836 47.619 0.00 0.00 37.07 2.24
513 562 1.548269 GATTGCATCCGGTTTTGGGAA 59.452 47.619 0.00 0.00 37.07 3.97
515 564 1.185315 AGATTGCATCCGGTTTTGGG 58.815 50.000 0.00 0.00 0.00 4.12
573 636 3.955650 ACAGCGATAACACACCTAAGT 57.044 42.857 0.00 0.00 0.00 2.24
574 637 4.209288 GCATACAGCGATAACACACCTAAG 59.791 45.833 0.00 0.00 0.00 2.18
575 638 4.116961 GCATACAGCGATAACACACCTAA 58.883 43.478 0.00 0.00 0.00 2.69
576 639 3.713288 GCATACAGCGATAACACACCTA 58.287 45.455 0.00 0.00 0.00 3.08
577 640 2.550978 GCATACAGCGATAACACACCT 58.449 47.619 0.00 0.00 0.00 4.00
606 669 2.477863 GCTCTTTGCGTCAAACACTGTT 60.478 45.455 1.63 0.00 0.00 3.16
636 699 9.866655 ACTATCTATTTGCATTGGAATTTCCTA 57.133 29.630 16.25 9.42 37.46 2.94
637 700 8.773033 ACTATCTATTTGCATTGGAATTTCCT 57.227 30.769 16.25 0.00 37.46 3.36
649 712 5.366482 TTGGCCTGTACTATCTATTTGCA 57.634 39.130 3.32 0.00 0.00 4.08
657 720 6.819397 AAAAAGAGTTTGGCCTGTACTATC 57.181 37.500 3.32 0.00 0.00 2.08
747 811 3.007614 ACGAGTTTGGGCTGTACTATGTT 59.992 43.478 0.00 0.00 0.00 2.71
955 1023 2.286294 GCAGAAGATGGCTGAATACACG 59.714 50.000 0.00 0.00 35.39 4.49
1320 1408 1.016627 GCATGGCTAGTGCGAATCAA 58.983 50.000 0.00 0.00 40.82 2.57
1379 1467 6.565999 GCCATAAAATCAGTTCGGCTATACAC 60.566 42.308 0.00 0.00 35.17 2.90
1390 1478 5.888161 CCCTGTAGAAGCCATAAAATCAGTT 59.112 40.000 0.00 0.00 0.00 3.16
1424 1512 1.587043 GGCTTCTTTTCCCTGTCCGC 61.587 60.000 0.00 0.00 0.00 5.54
1445 1533 2.794910 TCTTCTTTCGTTCGTTGAGCTG 59.205 45.455 0.00 0.00 0.00 4.24
1536 1624 0.770499 TTCCCCATCAGTGCAGTCAA 59.230 50.000 0.00 0.00 0.00 3.18
1562 1650 3.357203 TGCGAACTTCAGAGTCTCCTAT 58.643 45.455 0.00 0.00 34.21 2.57
1596 1684 6.183361 TGGCTCCTGCATAATCTTCTTATTCT 60.183 38.462 0.00 0.00 41.91 2.40
1685 1773 1.484653 TCCCGGTACATCTTCCACATG 59.515 52.381 0.00 0.00 0.00 3.21
1702 1790 3.056179 GCCTACTAGCTTCATCATCTCCC 60.056 52.174 0.00 0.00 0.00 4.30
1843 1931 2.240667 AGCATCCACTACAGCAGGAAAT 59.759 45.455 0.00 0.00 34.62 2.17
1894 1982 0.541863 CGCCCTTCCCATCTGTACTT 59.458 55.000 0.00 0.00 0.00 2.24
1973 2061 2.556622 CCTTCGCCACAATGTTTACCTT 59.443 45.455 0.00 0.00 0.00 3.50
2056 2144 0.947660 CATCAGACACAGCAGCACGT 60.948 55.000 0.00 0.00 0.00 4.49
2058 2146 1.397343 CATCATCAGACACAGCAGCAC 59.603 52.381 0.00 0.00 0.00 4.40
2143 2231 2.550978 ACCGTGCTCATACTAACATGC 58.449 47.619 0.00 0.00 0.00 4.06
2146 2234 3.630769 CCTCTACCGTGCTCATACTAACA 59.369 47.826 0.00 0.00 0.00 2.41
2161 2249 1.346068 GGACAGCATGGATCCTCTACC 59.654 57.143 14.23 10.07 43.62 3.18
2307 2395 6.604171 TCACCATTCATACAGCTATTTCCAT 58.396 36.000 0.00 0.00 0.00 3.41
2313 2401 5.311265 CACCATCACCATTCATACAGCTAT 58.689 41.667 0.00 0.00 0.00 2.97
3106 3194 3.487372 CGATCCTCCTGGTGAGTACATA 58.513 50.000 0.00 0.00 39.65 2.29
3336 3424 7.851508 ACTGTTGCAATAGTATAACATTAGCG 58.148 34.615 25.32 0.00 33.15 4.26
3434 3529 7.394641 GGGGAAAAGAATCAGTACTTCATTCTT 59.605 37.037 22.99 22.99 44.94 2.52
3610 3705 7.685641 GCCAGAGATTAGAAGTAGCAAGTACAT 60.686 40.741 0.00 0.00 33.55 2.29
3645 3740 3.117701 TCCAAGTGGAGACCATCAACAAA 60.118 43.478 0.00 0.00 39.78 2.83
3798 3894 6.132056 GCAGATTAGAACAGTTAATGCATCG 58.868 40.000 0.00 0.00 0.00 3.84
4043 4141 2.287915 GGGCTTAGCATCAACACATACG 59.712 50.000 6.53 0.00 0.00 3.06
4497 4595 3.312697 AGAAACAAAACGAACTCCAGAGC 59.687 43.478 0.00 0.00 0.00 4.09
4550 4648 3.637769 TCAAATTACCAATACCCCCTGC 58.362 45.455 0.00 0.00 0.00 4.85
4599 4697 5.738619 TGACTACTTCAGGATAAGCACAA 57.261 39.130 0.00 0.00 0.00 3.33
4604 4702 5.606348 AGCCTTGACTACTTCAGGATAAG 57.394 43.478 0.00 0.00 32.96 1.73
4631 4732 2.521105 GGTACGACCTTGTGAACACT 57.479 50.000 6.51 0.00 34.73 3.55
4700 4801 5.433051 TCCTTGATACAGGGGAAAGAATGAT 59.567 40.000 0.00 0.00 34.24 2.45
4746 4864 9.747898 ATCCTTACAACATAATTGACCAACTTA 57.252 29.630 0.00 0.00 0.00 2.24
4786 4904 3.394606 AGAGGAGGAAAAGTTACAAGCCA 59.605 43.478 0.00 0.00 0.00 4.75
4796 4914 6.102897 TCACTTACTCAAGAGGAGGAAAAG 57.897 41.667 0.00 0.00 45.86 2.27
4859 4977 7.038154 TCTAGCAATTATAAACACCATTGGC 57.962 36.000 1.54 0.00 0.00 4.52
4866 4984 6.677781 TGCCACTCTAGCAATTATAAACAC 57.322 37.500 0.00 0.00 37.28 3.32
4880 4998 3.706086 TGATGCTATCTGTTGCCACTCTA 59.294 43.478 0.00 0.00 0.00 2.43
4909 5027 5.469479 CCAACATAGAACAACCAATTCCAC 58.531 41.667 0.00 0.00 0.00 4.02
5172 5292 3.107601 CCAAGTCCTCAGGTCAGGATAA 58.892 50.000 0.00 0.00 44.75 1.75
5186 5306 2.104281 ACCCGCACTTATATCCAAGTCC 59.896 50.000 0.00 0.00 36.61 3.85
5243 5363 1.992170 CTGCCAGCTTTGCTTTCATC 58.008 50.000 6.55 0.00 36.40 2.92
5244 5364 0.037605 GCTGCCAGCTTTGCTTTCAT 60.038 50.000 10.04 0.00 36.40 2.57
5245 5365 1.364901 GCTGCCAGCTTTGCTTTCA 59.635 52.632 10.04 0.00 36.40 2.69
5246 5366 4.256813 GCTGCCAGCTTTGCTTTC 57.743 55.556 10.04 0.00 36.40 2.62
5258 5378 2.354199 GCAGTAGAAGATTTCAGCTGCC 59.646 50.000 9.47 0.00 45.37 4.85
5259 5379 3.672028 GCAGTAGAAGATTTCAGCTGC 57.328 47.619 9.47 15.99 45.17 5.25
5322 5442 4.019681 ACACAAGTTGGGCTGCTTATACTA 60.020 41.667 4.63 0.00 0.00 1.82
5326 5446 2.292828 ACACAAGTTGGGCTGCTTAT 57.707 45.000 4.63 0.00 0.00 1.73
5373 5493 5.115472 GTGTGTGAATATGCAGTTTTTCACG 59.885 40.000 19.87 0.00 46.87 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.