Multiple sequence alignment - TraesCS2D01G261500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G261500 chr2D 100.000 3422 0 0 1 3422 318080337 318076916 0.000000e+00 6320.0
1 TraesCS2D01G261500 chr2D 96.226 53 2 0 1 53 358787104 358787052 1.690000e-13 87.9
2 TraesCS2D01G261500 chr2B 95.812 1385 44 8 1653 3031 385772936 385771560 0.000000e+00 2224.0
3 TraesCS2D01G261500 chr2B 91.615 1121 56 12 556 1649 385774263 385773154 0.000000e+00 1515.0
4 TraesCS2D01G261500 chr2B 94.495 327 15 3 3040 3365 385769005 385768681 5.100000e-138 501.0
5 TraesCS2D01G261500 chr2B 86.035 401 39 7 65 448 385774876 385774476 6.830000e-112 414.0
6 TraesCS2D01G261500 chr2B 100.000 38 0 0 3363 3400 385768711 385768674 1.700000e-08 71.3
7 TraesCS2D01G261500 chr2A 95.410 1220 46 7 1653 2867 414500289 414501503 0.000000e+00 1934.0
8 TraesCS2D01G261500 chr2A 92.262 1189 60 10 488 1653 414499078 414500257 0.000000e+00 1657.0
9 TraesCS2D01G261500 chr2A 88.608 158 9 7 227 379 414496887 414497040 2.100000e-42 183.0
10 TraesCS2D01G261500 chr2A 93.023 86 5 1 363 448 414498899 414498983 1.290000e-24 124.0
11 TraesCS2D01G261500 chr2A 86.047 86 12 0 54 139 414479072 414479157 3.640000e-15 93.5
12 TraesCS2D01G261500 chr4A 88.125 800 52 17 872 1653 653719741 653718967 0.000000e+00 911.0
13 TraesCS2D01G261500 chr4A 87.875 800 54 19 872 1653 653617641 653618415 0.000000e+00 900.0
14 TraesCS2D01G261500 chr4A 86.591 798 64 18 872 1651 720985034 720984262 0.000000e+00 841.0
15 TraesCS2D01G261500 chr4A 100.000 33 0 0 1653 1685 653618447 653618479 1.030000e-05 62.1
16 TraesCS2D01G261500 chr4A 100.000 33 0 0 1653 1685 720984228 720984196 1.030000e-05 62.1
17 TraesCS2D01G261500 chr7B 88.095 798 49 19 872 1651 642054112 642053343 0.000000e+00 905.0
18 TraesCS2D01G261500 chr7B 100.000 33 0 0 1653 1685 642053309 642053277 1.030000e-05 62.1
19 TraesCS2D01G261500 chr5B 91.954 87 7 0 2156 2242 532616851 532616765 4.640000e-24 122.0
20 TraesCS2D01G261500 chr5B 90.000 90 9 0 2153 2242 532611570 532611481 2.160000e-22 117.0
21 TraesCS2D01G261500 chr5B 96.226 53 2 0 2154 2206 532618640 532618692 1.690000e-13 87.9
22 TraesCS2D01G261500 chr5A 89.130 92 10 0 2153 2244 552966279 552966188 7.760000e-22 115.0
23 TraesCS2D01G261500 chr7A 96.364 55 1 1 1 54 548374721 548374667 4.700000e-14 89.8
24 TraesCS2D01G261500 chr5D 96.296 54 2 0 2155 2208 438121524 438121577 4.700000e-14 89.8
25 TraesCS2D01G261500 chr6A 95.652 46 2 0 8 53 531781289 531781244 1.320000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G261500 chr2D 318076916 318080337 3421 True 6320.00 6320 100.00000 1 3422 1 chr2D.!!$R1 3421
1 TraesCS2D01G261500 chr2B 385768674 385774876 6202 True 945.06 2224 93.59140 65 3400 5 chr2B.!!$R1 3335
2 TraesCS2D01G261500 chr2A 414496887 414501503 4616 False 974.50 1934 92.32575 227 2867 4 chr2A.!!$F2 2640
3 TraesCS2D01G261500 chr4A 653718967 653719741 774 True 911.00 911 88.12500 872 1653 1 chr4A.!!$R1 781
4 TraesCS2D01G261500 chr4A 653617641 653618479 838 False 481.05 900 93.93750 872 1685 2 chr4A.!!$F1 813
5 TraesCS2D01G261500 chr4A 720984196 720985034 838 True 451.55 841 93.29550 872 1685 2 chr4A.!!$R2 813
6 TraesCS2D01G261500 chr7B 642053277 642054112 835 True 483.55 905 94.04750 872 1685 2 chr7B.!!$R1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.480252 AGCTCAAAAGAACTGGCCCT 59.520 50.0 0.0 0.0 0.00 5.19 F
1138 3163 0.595095 CTGCAAGGTCTGTGCCTTTC 59.405 55.0 0.0 0.0 45.91 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 3647 1.135083 CAACTCCTGCGTGGTAGTAGG 60.135 57.143 0.00 0.0 44.06 3.18 R
2960 5226 0.099082 TTGTTCAACAAACCGGTCGC 59.901 50.000 8.04 0.0 34.76 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.380843 TTTTCACAGGAGCTTATTCCCA 57.619 40.909 0.00 0.00 38.02 4.37
25 26 3.350219 TTCACAGGAGCTTATTCCCAC 57.650 47.619 0.00 0.00 38.02 4.61
26 27 2.265367 TCACAGGAGCTTATTCCCACA 58.735 47.619 0.00 0.00 38.02 4.17
27 28 2.846206 TCACAGGAGCTTATTCCCACAT 59.154 45.455 0.00 0.00 38.02 3.21
28 29 3.118261 TCACAGGAGCTTATTCCCACATC 60.118 47.826 0.00 0.00 38.02 3.06
29 30 2.846206 ACAGGAGCTTATTCCCACATCA 59.154 45.455 0.00 0.00 38.02 3.07
30 31 3.461085 ACAGGAGCTTATTCCCACATCAT 59.539 43.478 0.00 0.00 38.02 2.45
31 32 4.660303 ACAGGAGCTTATTCCCACATCATA 59.340 41.667 0.00 0.00 38.02 2.15
32 33 5.221803 ACAGGAGCTTATTCCCACATCATAG 60.222 44.000 0.00 0.00 38.02 2.23
33 34 4.006319 GGAGCTTATTCCCACATCATAGC 58.994 47.826 0.00 0.00 0.00 2.97
34 35 4.263243 GGAGCTTATTCCCACATCATAGCT 60.263 45.833 0.00 0.00 0.00 3.32
35 36 4.904241 AGCTTATTCCCACATCATAGCTC 58.096 43.478 0.00 0.00 0.00 4.09
36 37 4.349048 AGCTTATTCCCACATCATAGCTCA 59.651 41.667 0.00 0.00 0.00 4.26
37 38 5.065914 GCTTATTCCCACATCATAGCTCAA 58.934 41.667 0.00 0.00 0.00 3.02
38 39 5.532406 GCTTATTCCCACATCATAGCTCAAA 59.468 40.000 0.00 0.00 0.00 2.69
39 40 6.039717 GCTTATTCCCACATCATAGCTCAAAA 59.960 38.462 0.00 0.00 0.00 2.44
40 41 7.572523 TTATTCCCACATCATAGCTCAAAAG 57.427 36.000 0.00 0.00 0.00 2.27
41 42 4.842531 TCCCACATCATAGCTCAAAAGA 57.157 40.909 0.00 0.00 0.00 2.52
42 43 5.178096 TCCCACATCATAGCTCAAAAGAA 57.822 39.130 0.00 0.00 0.00 2.52
43 44 4.943705 TCCCACATCATAGCTCAAAAGAAC 59.056 41.667 0.00 0.00 0.00 3.01
44 45 4.946157 CCCACATCATAGCTCAAAAGAACT 59.054 41.667 0.00 0.00 0.00 3.01
45 46 5.163683 CCCACATCATAGCTCAAAAGAACTG 60.164 44.000 0.00 0.00 0.00 3.16
46 47 5.163683 CCACATCATAGCTCAAAAGAACTGG 60.164 44.000 0.00 0.00 0.00 4.00
47 48 4.397417 ACATCATAGCTCAAAAGAACTGGC 59.603 41.667 0.00 0.00 0.00 4.85
48 49 3.347216 TCATAGCTCAAAAGAACTGGCC 58.653 45.455 0.00 0.00 0.00 5.36
49 50 2.200373 TAGCTCAAAAGAACTGGCCC 57.800 50.000 0.00 0.00 0.00 5.80
50 51 0.480252 AGCTCAAAAGAACTGGCCCT 59.520 50.000 0.00 0.00 0.00 5.19
51 52 1.705186 AGCTCAAAAGAACTGGCCCTA 59.295 47.619 0.00 0.00 0.00 3.53
52 53 2.108250 AGCTCAAAAGAACTGGCCCTAA 59.892 45.455 0.00 0.00 0.00 2.69
53 54 2.890945 GCTCAAAAGAACTGGCCCTAAA 59.109 45.455 0.00 0.00 0.00 1.85
54 55 3.320826 GCTCAAAAGAACTGGCCCTAAAA 59.679 43.478 0.00 0.00 0.00 1.52
55 56 4.796290 GCTCAAAAGAACTGGCCCTAAAAC 60.796 45.833 0.00 0.00 0.00 2.43
56 57 4.542697 TCAAAAGAACTGGCCCTAAAACT 58.457 39.130 0.00 0.00 0.00 2.66
57 58 4.340950 TCAAAAGAACTGGCCCTAAAACTG 59.659 41.667 0.00 0.00 0.00 3.16
58 59 1.911057 AGAACTGGCCCTAAAACTGC 58.089 50.000 0.00 0.00 0.00 4.40
59 60 1.425448 AGAACTGGCCCTAAAACTGCT 59.575 47.619 0.00 0.00 0.00 4.24
60 61 2.642807 AGAACTGGCCCTAAAACTGCTA 59.357 45.455 0.00 0.00 0.00 3.49
61 62 2.491675 ACTGGCCCTAAAACTGCTAC 57.508 50.000 0.00 0.00 0.00 3.58
62 63 1.702957 ACTGGCCCTAAAACTGCTACA 59.297 47.619 0.00 0.00 0.00 2.74
63 64 2.308866 ACTGGCCCTAAAACTGCTACAT 59.691 45.455 0.00 0.00 0.00 2.29
81 82 5.106515 GCTACATGGAGTTTCTTCTTTGGAC 60.107 44.000 6.84 0.00 0.00 4.02
84 85 4.229304 TGGAGTTTCTTCTTTGGACACA 57.771 40.909 0.00 0.00 0.00 3.72
87 88 6.361433 TGGAGTTTCTTCTTTGGACACAATA 58.639 36.000 0.00 0.00 36.29 1.90
88 89 6.831353 TGGAGTTTCTTCTTTGGACACAATAA 59.169 34.615 0.00 0.00 36.29 1.40
94 95 9.581289 TTTCTTCTTTGGACACAATAAATCCTA 57.419 29.630 0.00 0.00 36.29 2.94
99 100 8.336235 TCTTTGGACACAATAAATCCTATTCCT 58.664 33.333 0.00 0.00 36.29 3.36
118 119 4.843728 TCCTATTTCCATGTGAGTTGACC 58.156 43.478 0.00 0.00 0.00 4.02
130 131 5.613329 TGTGAGTTGACCCTTTTTACGTAT 58.387 37.500 0.00 0.00 0.00 3.06
131 132 5.467399 TGTGAGTTGACCCTTTTTACGTATG 59.533 40.000 0.00 0.00 0.00 2.39
141 142 5.007823 CCCTTTTTACGTATGTGTGTTGTCA 59.992 40.000 0.00 0.00 0.00 3.58
142 143 6.133392 CCTTTTTACGTATGTGTGTTGTCAG 58.867 40.000 0.00 0.00 0.00 3.51
144 145 7.042590 CCTTTTTACGTATGTGTGTTGTCAGTA 60.043 37.037 0.00 0.00 0.00 2.74
148 166 5.090757 ACGTATGTGTGTTGTCAGTATACG 58.909 41.667 0.00 0.00 41.83 3.06
174 192 6.783892 CAGTTTATGGAAACCATGGTTTTG 57.216 37.500 36.86 25.81 46.80 2.44
177 195 5.736951 TTATGGAAACCATGGTTTTGGAG 57.263 39.130 36.86 1.98 46.80 3.86
184 202 5.628797 AACCATGGTTTTGGAGAAACAAT 57.371 34.783 24.86 0.00 39.25 2.71
216 234 6.486941 TGTTTTTCTATAAACGGGGAATCCT 58.513 36.000 0.00 0.00 40.14 3.24
227 245 4.505367 ACGGGGAATCCTGGGTTATTATA 58.495 43.478 0.00 0.00 43.79 0.98
231 249 6.377146 CGGGGAATCCTGGGTTATTATAAATG 59.623 42.308 0.00 0.00 35.76 2.32
277 298 6.429385 TGAAAGAAATGAAGAAAGAGGAGAGC 59.571 38.462 0.00 0.00 0.00 4.09
319 340 1.341080 CACCCCACATGCTCCTTTTT 58.659 50.000 0.00 0.00 0.00 1.94
340 361 1.826054 CCTCTCTCCGAGCCGACAT 60.826 63.158 0.00 0.00 38.49 3.06
392 2286 5.516696 CAGGTCGATCTTGTGTTATGTACAG 59.483 44.000 0.00 0.00 37.45 2.74
400 2294 4.822036 TGTGTTATGTACAGCAACAACC 57.178 40.909 21.13 13.54 37.45 3.77
448 2342 5.392057 GCCTTGGTCTCTTTACAATTACAGC 60.392 44.000 0.00 0.00 0.00 4.40
449 2343 5.123979 CCTTGGTCTCTTTACAATTACAGCC 59.876 44.000 0.00 0.00 0.00 4.85
451 2345 5.815581 TGGTCTCTTTACAATTACAGCCAT 58.184 37.500 0.00 0.00 0.00 4.40
452 2346 5.647658 TGGTCTCTTTACAATTACAGCCATG 59.352 40.000 0.00 0.00 0.00 3.66
453 2347 5.880332 GGTCTCTTTACAATTACAGCCATGA 59.120 40.000 0.00 0.00 0.00 3.07
454 2348 6.543831 GGTCTCTTTACAATTACAGCCATGAT 59.456 38.462 0.00 0.00 0.00 2.45
455 2349 7.254932 GGTCTCTTTACAATTACAGCCATGATC 60.255 40.741 0.00 0.00 0.00 2.92
456 2350 6.479990 TCTCTTTACAATTACAGCCATGATCG 59.520 38.462 0.00 0.00 0.00 3.69
457 2351 4.811555 TTACAATTACAGCCATGATCGC 57.188 40.909 0.00 0.00 0.00 4.58
461 2399 0.747852 TTACAGCCATGATCGCCGTA 59.252 50.000 0.00 0.00 0.00 4.02
595 2606 7.795482 TCTCCTGTGAAGAACGAAAAATAAA 57.205 32.000 0.00 0.00 0.00 1.40
634 2645 2.488153 GTGGGCTGAATATATTTCCCGC 59.512 50.000 19.89 19.89 36.56 6.13
639 2650 4.319177 GCTGAATATATTTCCCGCACTCT 58.681 43.478 0.00 0.00 0.00 3.24
640 2651 4.390297 GCTGAATATATTTCCCGCACTCTC 59.610 45.833 0.00 0.00 0.00 3.20
706 2719 3.214253 GGGAGGCCCAGTACGTAC 58.786 66.667 18.10 18.10 44.65 3.67
948 2962 1.201429 TTGCCCTTCTCACCCTCCTC 61.201 60.000 0.00 0.00 0.00 3.71
952 2966 1.557371 CCCTTCTCACCCTCCTCTTTC 59.443 57.143 0.00 0.00 0.00 2.62
1138 3163 0.595095 CTGCAAGGTCTGTGCCTTTC 59.405 55.000 0.00 0.00 45.91 2.62
1153 3178 3.199946 TGCCTTTCCCGATCTGTTCTTAT 59.800 43.478 0.00 0.00 0.00 1.73
1154 3179 4.200092 GCCTTTCCCGATCTGTTCTTATT 58.800 43.478 0.00 0.00 0.00 1.40
1155 3180 5.104693 TGCCTTTCCCGATCTGTTCTTATTA 60.105 40.000 0.00 0.00 0.00 0.98
1166 3191 9.712305 CGATCTGTTCTTATTACCATAGGAAAT 57.288 33.333 0.00 0.00 33.87 2.17
1199 3224 2.159517 GGTTTGTTGATGGATGCGTCTC 60.160 50.000 8.01 0.00 0.00 3.36
1200 3225 2.744202 GTTTGTTGATGGATGCGTCTCT 59.256 45.455 8.01 0.00 0.00 3.10
1363 3401 3.430098 CCATCGCTATGGCTTAGGATCTC 60.430 52.174 4.03 0.00 46.17 2.75
1490 3531 4.839668 TGTCCGTTTTACAGGGAATTTG 57.160 40.909 0.00 0.00 41.28 2.32
1492 3533 3.004944 GTCCGTTTTACAGGGAATTTGCA 59.995 43.478 0.00 0.00 41.28 4.08
1497 3538 5.174943 CGTTTTACAGGGAATTTGCAAACTC 59.825 40.000 15.41 13.61 0.00 3.01
1526 3567 4.138487 AGTAGTTGGCATAGTTGGTAGC 57.862 45.455 0.00 0.00 0.00 3.58
1543 3584 4.937620 TGGTAGCTTTCATAGTTTGCTGAG 59.062 41.667 0.00 0.00 35.47 3.35
1585 3626 9.269453 AGTTTTCAGACGCTAATTTAAGTACTT 57.731 29.630 13.68 13.68 0.00 2.24
1591 3632 9.953825 CAGACGCTAATTTAAGTACTTTAACTG 57.046 33.333 14.49 8.60 31.11 3.16
1621 3662 1.466856 TGTACCTACTACCACGCAGG 58.533 55.000 0.00 0.00 45.67 4.85
1732 3990 6.073447 TCCAAACTCAATAATTCCTGCCTA 57.927 37.500 0.00 0.00 0.00 3.93
1736 3994 5.653255 ACTCAATAATTCCTGCCTACCAT 57.347 39.130 0.00 0.00 0.00 3.55
1752 4010 5.644644 CCTACCATCAGAAATTGCTTTGTC 58.355 41.667 0.00 0.00 0.00 3.18
1931 4190 4.252971 ACAACTGTGACGTAAGCTACAT 57.747 40.909 0.00 0.00 45.62 2.29
1933 4192 3.936372 ACTGTGACGTAAGCTACATGT 57.064 42.857 2.69 2.69 45.62 3.21
1960 4219 4.332268 TGCTTCATTTTGTTGGTTTCTTGC 59.668 37.500 0.00 0.00 0.00 4.01
1987 4246 8.921353 ATTCATTCAGCAGATCTTATTTAGCT 57.079 30.769 0.00 0.00 0.00 3.32
1999 4258 9.732130 AGATCTTATTTAGCTTTCTCTGTTGTT 57.268 29.630 0.00 0.00 0.00 2.83
2121 4384 1.757682 TATGGGCAAAGCTTTACCCG 58.242 50.000 33.01 14.85 45.18 5.28
2123 4386 1.175983 TGGGCAAAGCTTTACCCGTG 61.176 55.000 33.01 14.72 45.18 4.94
2134 4397 5.857268 AGCTTTACCCGTGTTTCTAACTTA 58.143 37.500 0.00 0.00 0.00 2.24
2163 4426 3.855858 CTTTCTACAGGTCAGCCTTCTC 58.144 50.000 0.00 0.00 44.18 2.87
2175 4438 0.972883 GCCTTCTCACTGAGAGTGGT 59.027 55.000 21.49 0.00 45.94 4.16
2242 4505 1.769026 CCAGGTCTGTGCTCTAGCTA 58.231 55.000 3.26 0.00 42.66 3.32
2273 4536 3.747529 TGTTATGCGGCACATCATATCTG 59.252 43.478 4.03 0.00 40.38 2.90
2733 4998 2.961062 ACTCTGCTGCATTTTCTGGTTT 59.039 40.909 1.31 0.00 0.00 3.27
2759 5024 9.706691 TTATTGTAGTTGGAGAAGAGTAGTTTG 57.293 33.333 0.00 0.00 0.00 2.93
2771 5036 7.941919 AGAAGAGTAGTTTGGAAATTTTGGTC 58.058 34.615 0.00 0.00 0.00 4.02
2904 5170 2.123077 CCGAGGAGATGGCCCTCT 60.123 66.667 10.72 10.72 46.15 3.69
2944 5210 2.259266 TCGTGTAGAAACCCAAACCC 57.741 50.000 0.00 0.00 0.00 4.11
2960 5226 4.700213 CCAAACCCTGAACTGTTGGTATAG 59.300 45.833 0.00 0.00 0.00 1.31
3012 5278 1.264020 TGGCATATTGATTTCGCGAGC 59.736 47.619 9.59 5.71 0.00 5.03
3049 7861 4.773323 ACTGAAGCTTGCTAATCAAACC 57.227 40.909 2.10 0.00 33.65 3.27
3081 7893 3.769844 TGATTCTACAGTTCTCCAGTCCC 59.230 47.826 0.00 0.00 0.00 4.46
3084 7896 2.110188 TCTACAGTTCTCCAGTCCCTGT 59.890 50.000 0.00 0.00 39.53 4.00
3131 7943 5.123027 CAGATACCTTTCCTCAGAAAACTGC 59.877 44.000 0.00 0.00 41.40 4.40
3142 7954 2.490993 GAAAACTGCCCATGGTGCGG 62.491 60.000 24.43 24.43 40.98 5.69
3173 7985 3.973472 AAAAACTCCTATCCCATCCCC 57.027 47.619 0.00 0.00 0.00 4.81
3208 8020 6.610075 AAGTTGCATCTCACCCAATAATTT 57.390 33.333 0.00 0.00 0.00 1.82
3240 8052 1.665679 GTTGCATCTACCATGTGTCGG 59.334 52.381 0.00 0.00 0.00 4.79
3270 8082 0.179116 CTCCTGCTCAGTCACATCCG 60.179 60.000 0.00 0.00 0.00 4.18
3302 8114 1.851267 GTGAAGACCCACCCCCTTT 59.149 57.895 0.00 0.00 0.00 3.11
3321 8133 0.932211 TCCCCTCCCCTCTAGTGTAC 59.068 60.000 0.00 0.00 0.00 2.90
3332 8144 1.911357 TCTAGTGTACGTCTCCTGGGA 59.089 52.381 0.00 0.00 0.00 4.37
3335 8147 0.460311 GTGTACGTCTCCTGGGATGG 59.540 60.000 0.00 0.00 0.00 3.51
3336 8148 0.333652 TGTACGTCTCCTGGGATGGA 59.666 55.000 0.00 0.00 34.52 3.41
3343 8155 0.176680 CTCCTGGGATGGAGTTGTCG 59.823 60.000 2.62 0.00 46.33 4.35
3344 8156 0.252057 TCCTGGGATGGAGTTGTCGA 60.252 55.000 0.00 0.00 0.00 4.20
3345 8157 0.613260 CCTGGGATGGAGTTGTCGAA 59.387 55.000 0.00 0.00 0.00 3.71
3346 8158 1.676014 CCTGGGATGGAGTTGTCGAAC 60.676 57.143 0.00 0.00 0.00 3.95
3347 8159 0.037697 TGGGATGGAGTTGTCGAACG 60.038 55.000 0.00 0.00 37.15 3.95
3348 8160 1.359459 GGGATGGAGTTGTCGAACGC 61.359 60.000 0.00 0.00 37.15 4.84
3353 8165 3.657537 GAGTTGTCGAACGCCATTG 57.342 52.632 0.00 0.00 37.15 2.82
3354 8166 0.865769 GAGTTGTCGAACGCCATTGT 59.134 50.000 0.00 0.00 37.15 2.71
3355 8167 1.263217 GAGTTGTCGAACGCCATTGTT 59.737 47.619 0.00 0.00 37.15 2.83
3356 8168 2.477375 GAGTTGTCGAACGCCATTGTTA 59.523 45.455 0.00 0.00 37.15 2.41
3357 8169 2.222445 AGTTGTCGAACGCCATTGTTAC 59.778 45.455 0.00 0.00 37.15 2.50
3358 8170 2.157834 TGTCGAACGCCATTGTTACT 57.842 45.000 0.00 0.00 30.75 2.24
3359 8171 1.795872 TGTCGAACGCCATTGTTACTG 59.204 47.619 0.00 0.00 30.75 2.74
3360 8172 1.127951 GTCGAACGCCATTGTTACTGG 59.872 52.381 0.00 0.00 36.81 4.00
3361 8173 1.001068 TCGAACGCCATTGTTACTGGA 59.999 47.619 0.00 0.00 35.70 3.86
3413 8225 4.463788 CCCCCACCCCTTCATGGC 62.464 72.222 0.00 0.00 34.37 4.40
3414 8226 3.350163 CCCCACCCCTTCATGGCT 61.350 66.667 0.00 0.00 34.37 4.75
3415 8227 2.276740 CCCACCCCTTCATGGCTC 59.723 66.667 0.00 0.00 34.37 4.70
3416 8228 2.615465 CCCACCCCTTCATGGCTCA 61.615 63.158 0.00 0.00 34.37 4.26
3417 8229 1.616921 CCACCCCTTCATGGCTCAT 59.383 57.895 0.00 0.00 0.00 2.90
3418 8230 0.032813 CCACCCCTTCATGGCTCATT 60.033 55.000 0.00 0.00 0.00 2.57
3419 8231 1.620524 CCACCCCTTCATGGCTCATTT 60.621 52.381 0.00 0.00 0.00 2.32
3420 8232 1.479323 CACCCCTTCATGGCTCATTTG 59.521 52.381 0.00 0.00 0.00 2.32
3421 8233 1.117150 CCCCTTCATGGCTCATTTGG 58.883 55.000 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.885912 GTGGGAATAAGCTCCTGTGAAAATA 59.114 40.000 0.00 0.00 35.63 1.40
3 4 4.079253 GTGGGAATAAGCTCCTGTGAAAA 58.921 43.478 0.00 0.00 35.63 2.29
5 6 2.642311 TGTGGGAATAAGCTCCTGTGAA 59.358 45.455 0.00 0.00 35.63 3.18
6 7 2.265367 TGTGGGAATAAGCTCCTGTGA 58.735 47.619 0.00 0.00 35.63 3.58
7 8 2.787473 TGTGGGAATAAGCTCCTGTG 57.213 50.000 0.00 0.00 35.63 3.66
8 9 2.846206 TGATGTGGGAATAAGCTCCTGT 59.154 45.455 0.00 0.00 35.63 4.00
9 10 3.565764 TGATGTGGGAATAAGCTCCTG 57.434 47.619 0.00 0.00 35.63 3.86
10 11 4.263243 GCTATGATGTGGGAATAAGCTCCT 60.263 45.833 0.00 0.00 35.63 3.69
11 12 4.006319 GCTATGATGTGGGAATAAGCTCC 58.994 47.826 0.00 0.00 34.41 4.70
12 13 4.904241 AGCTATGATGTGGGAATAAGCTC 58.096 43.478 0.00 0.00 0.00 4.09
13 14 4.349048 TGAGCTATGATGTGGGAATAAGCT 59.651 41.667 0.00 0.00 0.00 3.74
14 15 4.645535 TGAGCTATGATGTGGGAATAAGC 58.354 43.478 0.00 0.00 0.00 3.09
15 16 7.500227 TCTTTTGAGCTATGATGTGGGAATAAG 59.500 37.037 0.00 0.00 0.00 1.73
16 17 7.345691 TCTTTTGAGCTATGATGTGGGAATAA 58.654 34.615 0.00 0.00 0.00 1.40
17 18 6.899089 TCTTTTGAGCTATGATGTGGGAATA 58.101 36.000 0.00 0.00 0.00 1.75
18 19 5.759059 TCTTTTGAGCTATGATGTGGGAAT 58.241 37.500 0.00 0.00 0.00 3.01
19 20 5.178096 TCTTTTGAGCTATGATGTGGGAA 57.822 39.130 0.00 0.00 0.00 3.97
20 21 4.842531 TCTTTTGAGCTATGATGTGGGA 57.157 40.909 0.00 0.00 0.00 4.37
21 22 4.946157 AGTTCTTTTGAGCTATGATGTGGG 59.054 41.667 0.00 0.00 38.25 4.61
22 23 5.163683 CCAGTTCTTTTGAGCTATGATGTGG 60.164 44.000 0.00 0.00 37.94 4.17
23 24 5.675575 GCCAGTTCTTTTGAGCTATGATGTG 60.676 44.000 0.00 0.00 37.94 3.21
24 25 4.397417 GCCAGTTCTTTTGAGCTATGATGT 59.603 41.667 0.00 0.00 37.94 3.06
25 26 4.201990 GGCCAGTTCTTTTGAGCTATGATG 60.202 45.833 0.00 0.00 37.94 3.07
26 27 3.950395 GGCCAGTTCTTTTGAGCTATGAT 59.050 43.478 0.00 0.00 37.94 2.45
27 28 3.347216 GGCCAGTTCTTTTGAGCTATGA 58.653 45.455 0.00 0.00 37.94 2.15
28 29 2.424956 GGGCCAGTTCTTTTGAGCTATG 59.575 50.000 4.39 0.00 37.94 2.23
29 30 2.310052 AGGGCCAGTTCTTTTGAGCTAT 59.690 45.455 6.18 0.00 37.94 2.97
30 31 1.705186 AGGGCCAGTTCTTTTGAGCTA 59.295 47.619 6.18 0.00 37.94 3.32
31 32 0.480252 AGGGCCAGTTCTTTTGAGCT 59.520 50.000 6.18 0.00 40.74 4.09
32 33 2.200373 TAGGGCCAGTTCTTTTGAGC 57.800 50.000 6.18 0.00 0.00 4.26
33 34 4.584743 AGTTTTAGGGCCAGTTCTTTTGAG 59.415 41.667 6.18 0.00 0.00 3.02
34 35 4.340950 CAGTTTTAGGGCCAGTTCTTTTGA 59.659 41.667 6.18 0.00 0.00 2.69
35 36 4.620982 CAGTTTTAGGGCCAGTTCTTTTG 58.379 43.478 6.18 0.00 0.00 2.44
36 37 3.069586 GCAGTTTTAGGGCCAGTTCTTTT 59.930 43.478 6.18 0.00 0.00 2.27
37 38 2.628178 GCAGTTTTAGGGCCAGTTCTTT 59.372 45.455 6.18 0.00 0.00 2.52
38 39 2.158460 AGCAGTTTTAGGGCCAGTTCTT 60.158 45.455 6.18 0.00 0.00 2.52
39 40 1.425448 AGCAGTTTTAGGGCCAGTTCT 59.575 47.619 6.18 0.00 0.00 3.01
40 41 1.911057 AGCAGTTTTAGGGCCAGTTC 58.089 50.000 6.18 0.00 0.00 3.01
41 42 2.107552 TGTAGCAGTTTTAGGGCCAGTT 59.892 45.455 6.18 0.00 0.00 3.16
42 43 1.702957 TGTAGCAGTTTTAGGGCCAGT 59.297 47.619 6.18 0.00 0.00 4.00
43 44 2.489938 TGTAGCAGTTTTAGGGCCAG 57.510 50.000 6.18 0.00 0.00 4.85
44 45 2.620367 CCATGTAGCAGTTTTAGGGCCA 60.620 50.000 6.18 0.00 0.00 5.36
45 46 2.024414 CCATGTAGCAGTTTTAGGGCC 58.976 52.381 0.00 0.00 0.00 5.80
46 47 2.945668 CTCCATGTAGCAGTTTTAGGGC 59.054 50.000 0.00 0.00 0.00 5.19
47 48 4.222124 ACTCCATGTAGCAGTTTTAGGG 57.778 45.455 0.00 0.00 0.00 3.53
48 49 5.940470 AGAAACTCCATGTAGCAGTTTTAGG 59.060 40.000 9.44 0.00 33.53 2.69
49 50 7.389053 AGAAGAAACTCCATGTAGCAGTTTTAG 59.611 37.037 9.44 0.00 33.53 1.85
50 51 7.224297 AGAAGAAACTCCATGTAGCAGTTTTA 58.776 34.615 9.44 0.00 33.53 1.52
51 52 6.064717 AGAAGAAACTCCATGTAGCAGTTTT 58.935 36.000 9.44 0.00 33.53 2.43
52 53 5.625150 AGAAGAAACTCCATGTAGCAGTTT 58.375 37.500 8.34 8.34 35.70 2.66
53 54 5.234466 AGAAGAAACTCCATGTAGCAGTT 57.766 39.130 0.00 0.00 0.00 3.16
54 55 4.899352 AGAAGAAACTCCATGTAGCAGT 57.101 40.909 0.00 0.00 0.00 4.40
55 56 5.106396 CCAAAGAAGAAACTCCATGTAGCAG 60.106 44.000 0.00 0.00 0.00 4.24
56 57 4.761739 CCAAAGAAGAAACTCCATGTAGCA 59.238 41.667 0.00 0.00 0.00 3.49
57 58 5.003804 TCCAAAGAAGAAACTCCATGTAGC 58.996 41.667 0.00 0.00 0.00 3.58
58 59 5.997746 TGTCCAAAGAAGAAACTCCATGTAG 59.002 40.000 0.00 0.00 0.00 2.74
59 60 5.763204 GTGTCCAAAGAAGAAACTCCATGTA 59.237 40.000 0.00 0.00 0.00 2.29
60 61 4.580580 GTGTCCAAAGAAGAAACTCCATGT 59.419 41.667 0.00 0.00 0.00 3.21
61 62 4.580167 TGTGTCCAAAGAAGAAACTCCATG 59.420 41.667 0.00 0.00 0.00 3.66
62 63 4.792068 TGTGTCCAAAGAAGAAACTCCAT 58.208 39.130 0.00 0.00 0.00 3.41
63 64 4.229304 TGTGTCCAAAGAAGAAACTCCA 57.771 40.909 0.00 0.00 0.00 3.86
74 75 8.525290 AGGAATAGGATTTATTGTGTCCAAAG 57.475 34.615 0.00 0.00 34.42 2.77
87 88 8.506083 ACTCACATGGAAATAGGAATAGGATTT 58.494 33.333 0.00 0.00 0.00 2.17
88 89 8.050316 ACTCACATGGAAATAGGAATAGGATT 57.950 34.615 0.00 0.00 0.00 3.01
94 95 5.888161 GGTCAACTCACATGGAAATAGGAAT 59.112 40.000 0.00 0.00 0.00 3.01
97 98 3.947834 GGGTCAACTCACATGGAAATAGG 59.052 47.826 0.00 0.00 0.00 2.57
99 100 4.927267 AGGGTCAACTCACATGGAAATA 57.073 40.909 0.00 0.00 0.00 1.40
104 105 4.320202 CGTAAAAAGGGTCAACTCACATGG 60.320 45.833 0.00 0.00 0.00 3.66
110 111 5.467735 ACACATACGTAAAAAGGGTCAACTC 59.532 40.000 0.00 0.00 0.00 3.01
118 119 6.050454 TGACAACACACATACGTAAAAAGG 57.950 37.500 0.00 0.00 0.00 3.11
130 131 3.318557 TGGTCGTATACTGACAACACACA 59.681 43.478 21.21 11.27 38.10 3.72
131 132 3.904571 TGGTCGTATACTGACAACACAC 58.095 45.455 21.21 9.58 38.10 3.82
141 142 6.070653 TGGTTTCCATAAACTGGTCGTATACT 60.071 38.462 0.56 0.00 46.08 2.12
142 143 6.108015 TGGTTTCCATAAACTGGTCGTATAC 58.892 40.000 0.00 0.00 46.08 1.47
144 145 5.168647 TGGTTTCCATAAACTGGTCGTAT 57.831 39.130 0.00 0.00 46.08 3.06
148 166 4.086457 ACCATGGTTTCCATAAACTGGTC 58.914 43.478 13.00 0.00 44.62 4.02
160 178 5.017294 TGTTTCTCCAAAACCATGGTTTC 57.983 39.130 36.64 23.66 46.22 2.78
192 210 6.376018 CAGGATTCCCCGTTTATAGAAAAACA 59.624 38.462 0.00 0.00 38.93 2.83
227 245 9.609950 CATTTTACGCATTTTCCATTTTCATTT 57.390 25.926 0.00 0.00 0.00 2.32
231 249 9.316859 CTTTCATTTTACGCATTTTCCATTTTC 57.683 29.630 0.00 0.00 0.00 2.29
236 254 8.494347 CATTTCTTTCATTTTACGCATTTTCCA 58.506 29.630 0.00 0.00 0.00 3.53
277 298 0.620030 TCCCCTCACATGTCACATGG 59.380 55.000 21.95 10.82 0.00 3.66
340 361 2.343758 GCTGGACTCGAGTGGCAA 59.656 61.111 25.58 1.37 0.00 4.52
392 2286 2.291457 AAAGGTGCACCGGTTGTTGC 62.291 55.000 29.68 5.98 42.08 4.17
400 2294 2.101209 GACGTGACAAAGGTGCACCG 62.101 60.000 29.68 18.33 42.08 4.94
461 2399 2.434359 GCTTTGCTAGCCGACGGT 60.434 61.111 16.73 4.97 44.48 4.83
613 2624 2.488153 GCGGGAAATATATTCAGCCCAC 59.512 50.000 21.54 13.57 35.26 4.61
634 2645 4.941325 CATGAACAAGACATGGAGAGTG 57.059 45.455 0.00 0.00 40.66 3.51
704 2717 1.411246 GGGCCGTATGTCACATCAGTA 59.589 52.381 0.00 0.00 0.00 2.74
706 2719 0.177836 TGGGCCGTATGTCACATCAG 59.822 55.000 0.00 0.00 0.00 2.90
948 2962 0.317479 ACGAGGAGGTCAACGGAAAG 59.683 55.000 0.00 0.00 0.00 2.62
952 2966 0.249741 AACAACGAGGAGGTCAACGG 60.250 55.000 0.00 0.00 0.00 4.44
1138 3163 6.210784 TCCTATGGTAATAAGAACAGATCGGG 59.789 42.308 0.00 0.00 0.00 5.14
1155 3180 9.936329 AACCAGACATAAAATATTTCCTATGGT 57.064 29.630 17.95 15.48 36.40 3.55
1166 3191 8.642935 TCCATCAACAAACCAGACATAAAATA 57.357 30.769 0.00 0.00 0.00 1.40
1167 3192 7.537596 TCCATCAACAAACCAGACATAAAAT 57.462 32.000 0.00 0.00 0.00 1.82
1169 3194 6.572119 GCATCCATCAACAAACCAGACATAAA 60.572 38.462 0.00 0.00 0.00 1.40
1182 3207 1.550072 TCAGAGACGCATCCATCAACA 59.450 47.619 0.00 0.00 0.00 3.33
1199 3224 1.829349 GATCGCCGCAGCAGATTCAG 61.829 60.000 0.00 0.00 39.83 3.02
1200 3225 1.884464 GATCGCCGCAGCAGATTCA 60.884 57.895 0.00 0.00 39.83 2.57
1344 3382 3.162147 AGAGATCCTAAGCCATAGCGA 57.838 47.619 0.00 0.00 46.67 4.93
1363 3401 4.081752 AGGACACAGTCAGAGCTAATGAAG 60.082 45.833 2.79 2.54 33.68 3.02
1429 3467 1.885887 TGCCAAATCTAGCAGCGTTTT 59.114 42.857 0.00 0.00 33.08 2.43
1430 3468 1.533625 TGCCAAATCTAGCAGCGTTT 58.466 45.000 0.00 0.00 33.08 3.60
1490 3531 7.590279 TGCCAACTACTAATTAAAGAGTTTGC 58.410 34.615 15.76 15.76 38.55 3.68
1497 3538 9.174166 ACCAACTATGCCAACTACTAATTAAAG 57.826 33.333 0.00 0.00 0.00 1.85
1543 3584 7.433425 GTCTGAAAACTGAATAAATAGCATGCC 59.567 37.037 15.66 0.00 0.00 4.40
1606 3647 1.135083 CAACTCCTGCGTGGTAGTAGG 60.135 57.143 0.00 0.00 44.06 3.18
1621 3662 8.560374 AGCTTTAAACTGATACAAGAACAACTC 58.440 33.333 0.00 0.00 0.00 3.01
1732 3990 3.569701 ACGACAAAGCAATTTCTGATGGT 59.430 39.130 0.00 0.00 0.00 3.55
1736 3994 3.210227 TGGACGACAAAGCAATTTCTGA 58.790 40.909 0.00 0.00 0.00 3.27
1752 4010 2.084610 TTCTTCAGACATGCTGGACG 57.915 50.000 14.50 6.27 44.98 4.79
1931 4190 6.403866 AACCAACAAAATGAAGCATCTACA 57.596 33.333 0.00 0.00 0.00 2.74
1933 4192 7.288810 AGAAACCAACAAAATGAAGCATCTA 57.711 32.000 0.00 0.00 0.00 1.98
1987 4246 7.122055 ACCTGAACAAATACAACAACAGAGAAA 59.878 33.333 0.00 0.00 0.00 2.52
2077 4336 8.837788 AAATGGAAAAGGACAGATTGAAAATC 57.162 30.769 0.00 0.00 0.00 2.17
2106 4369 0.671796 AACACGGGTAAAGCTTTGCC 59.328 50.000 31.63 31.63 41.53 4.52
2114 4377 6.815089 TCACTAAGTTAGAAACACGGGTAAA 58.185 36.000 16.89 0.00 0.00 2.01
2121 4384 6.803154 AAGCCATCACTAAGTTAGAAACAC 57.197 37.500 16.89 1.93 0.00 3.32
2123 4386 7.674471 AGAAAGCCATCACTAAGTTAGAAAC 57.326 36.000 16.89 0.46 0.00 2.78
2134 4397 2.906389 TGACCTGTAGAAAGCCATCACT 59.094 45.455 0.00 0.00 0.00 3.41
2175 4438 4.777896 AGCTTCAGGTCATCCTTAGTGTTA 59.222 41.667 0.00 0.00 43.07 2.41
2242 4505 3.005261 TGTGCCGCATAACAAGTTTCAAT 59.995 39.130 0.00 0.00 0.00 2.57
2273 4536 1.237285 ATCAAGAGTGTGCAACGGGC 61.237 55.000 0.00 0.00 42.39 6.13
2284 4547 5.008415 CACAGAGCAAAGAAACATCAAGAGT 59.992 40.000 0.00 0.00 0.00 3.24
2733 4998 9.706691 CAAACTACTCTTCTCCAACTACAATAA 57.293 33.333 0.00 0.00 0.00 1.40
2904 5170 7.332430 ACACGATGATTAAGATTACGACCAAAA 59.668 33.333 0.00 0.00 0.00 2.44
2944 5210 3.187700 GGTCGCTATACCAACAGTTCAG 58.812 50.000 0.00 0.00 39.50 3.02
2960 5226 0.099082 TTGTTCAACAAACCGGTCGC 59.901 50.000 8.04 0.00 34.76 5.19
3012 5278 8.616076 CAAGCTTCAGTTTATACCTTATCCTTG 58.384 37.037 0.00 0.00 0.00 3.61
3049 7861 6.917533 AGAACTGTAGAATCATTTGCTTTGG 58.082 36.000 0.00 0.00 0.00 3.28
3157 7969 0.471971 CACGGGGATGGGATAGGAGT 60.472 60.000 0.00 0.00 0.00 3.85
3164 7976 1.075525 CCTCTACACGGGGATGGGA 60.076 63.158 0.00 0.00 0.00 4.37
3173 7985 2.163818 TGCAACTTTCCCTCTACACG 57.836 50.000 0.00 0.00 0.00 4.49
3184 7996 6.610075 AATTATTGGGTGAGATGCAACTTT 57.390 33.333 0.00 0.00 33.59 2.66
3270 8082 1.340248 TCTTCACGGTGAACCAGAGAC 59.660 52.381 19.07 0.00 32.21 3.36
3302 8114 0.932211 GTACACTAGAGGGGAGGGGA 59.068 60.000 0.00 0.00 0.00 4.81
3332 8144 1.369692 TGGCGTTCGACAACTCCAT 59.630 52.632 0.00 0.00 41.58 3.41
3335 8147 0.865769 ACAATGGCGTTCGACAACTC 59.134 50.000 4.51 0.00 0.00 3.01
3336 8148 1.305201 AACAATGGCGTTCGACAACT 58.695 45.000 4.51 0.00 0.00 3.16
3337 8149 2.222445 AGTAACAATGGCGTTCGACAAC 59.778 45.455 4.51 0.00 0.00 3.32
3338 8150 2.222213 CAGTAACAATGGCGTTCGACAA 59.778 45.455 4.51 0.00 0.00 3.18
3339 8151 1.795872 CAGTAACAATGGCGTTCGACA 59.204 47.619 2.54 2.54 0.00 4.35
3340 8152 1.127951 CCAGTAACAATGGCGTTCGAC 59.872 52.381 0.00 0.00 0.00 4.20
3341 8153 1.001068 TCCAGTAACAATGGCGTTCGA 59.999 47.619 0.00 0.00 37.76 3.71
3342 8154 1.393539 CTCCAGTAACAATGGCGTTCG 59.606 52.381 0.00 0.00 37.76 3.95
3343 8155 2.673368 CTCTCCAGTAACAATGGCGTTC 59.327 50.000 0.00 0.00 37.76 3.95
3344 8156 2.038557 ACTCTCCAGTAACAATGGCGTT 59.961 45.455 0.00 0.00 37.76 4.84
3345 8157 1.623811 ACTCTCCAGTAACAATGGCGT 59.376 47.619 0.00 0.00 37.76 5.68
3346 8158 2.386661 ACTCTCCAGTAACAATGGCG 57.613 50.000 0.00 0.00 37.76 5.69
3347 8159 3.412386 ACAACTCTCCAGTAACAATGGC 58.588 45.455 0.00 0.00 37.76 4.40
3348 8160 3.679980 CGACAACTCTCCAGTAACAATGG 59.320 47.826 0.00 0.00 39.33 3.16
3349 8161 4.556233 TCGACAACTCTCCAGTAACAATG 58.444 43.478 0.00 0.00 30.14 2.82
3350 8162 4.866508 TCGACAACTCTCCAGTAACAAT 57.133 40.909 0.00 0.00 30.14 2.71
3351 8163 4.365723 GTTCGACAACTCTCCAGTAACAA 58.634 43.478 0.00 0.00 30.14 2.83
3352 8164 3.549423 CGTTCGACAACTCTCCAGTAACA 60.549 47.826 0.00 0.00 30.14 2.41
3353 8165 2.978489 CGTTCGACAACTCTCCAGTAAC 59.022 50.000 0.00 0.00 30.14 2.50
3354 8166 2.606308 GCGTTCGACAACTCTCCAGTAA 60.606 50.000 0.00 0.00 30.14 2.24
3355 8167 1.068748 GCGTTCGACAACTCTCCAGTA 60.069 52.381 0.00 0.00 30.14 2.74
3356 8168 0.318784 GCGTTCGACAACTCTCCAGT 60.319 55.000 0.00 0.00 0.00 4.00
3357 8169 1.009389 GGCGTTCGACAACTCTCCAG 61.009 60.000 0.00 0.00 0.00 3.86
3358 8170 1.006571 GGCGTTCGACAACTCTCCA 60.007 57.895 0.00 0.00 0.00 3.86
3359 8171 0.389948 ATGGCGTTCGACAACTCTCC 60.390 55.000 4.51 0.00 0.00 3.71
3360 8172 1.126846 CAATGGCGTTCGACAACTCTC 59.873 52.381 4.51 0.00 0.00 3.20
3361 8173 1.148310 CAATGGCGTTCGACAACTCT 58.852 50.000 4.51 0.00 0.00 3.24
3400 8212 1.479323 CAAATGAGCCATGAAGGGGTG 59.521 52.381 0.00 0.00 39.15 4.61
3401 8213 1.620524 CCAAATGAGCCATGAAGGGGT 60.621 52.381 0.00 0.00 42.44 4.95
3402 8214 1.117150 CCAAATGAGCCATGAAGGGG 58.883 55.000 0.00 0.00 38.09 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.