Multiple sequence alignment - TraesCS2D01G261300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G261300 chr2D 100.000 6059 0 0 1 6059 317948763 317942705 0.000000e+00 11189.0
1 TraesCS2D01G261300 chr2A 96.029 2191 66 9 588 2775 414989301 414991473 0.000000e+00 3544.0
2 TraesCS2D01G261300 chr2A 97.991 1543 25 3 3030 4569 414992288 414993827 0.000000e+00 2673.0
3 TraesCS2D01G261300 chr2A 94.097 1406 50 14 4670 6057 414993823 414995213 0.000000e+00 2106.0
4 TraesCS2D01G261300 chr2A 97.266 256 7 0 2774 3029 414991632 414991887 9.330000e-118 435.0
5 TraesCS2D01G261300 chr2A 79.579 617 64 31 1 594 414988570 414989147 9.530000e-103 385.0
6 TraesCS2D01G261300 chr2B 96.820 1541 31 4 3030 4570 385565599 385564077 0.000000e+00 2558.0
7 TraesCS2D01G261300 chr2B 94.433 1401 57 9 4670 6057 385564079 385562687 0.000000e+00 2135.0
8 TraesCS2D01G261300 chr2B 95.216 1066 48 1 588 1653 385568665 385567603 0.000000e+00 1683.0
9 TraesCS2D01G261300 chr2B 96.627 830 27 1 2200 3029 385566828 385566000 0.000000e+00 1376.0
10 TraesCS2D01G261300 chr2B 96.926 553 15 2 1649 2201 385567492 385566942 0.000000e+00 926.0
11 TraesCS2D01G261300 chr2B 84.290 331 29 10 146 459 385569495 385569171 9.870000e-78 302.0
12 TraesCS2D01G261300 chr2B 87.821 156 14 4 1 153 385569670 385569517 1.740000e-40 178.0
13 TraesCS2D01G261300 chr6B 85.795 1056 117 25 878 1915 127604381 127605421 0.000000e+00 1088.0
14 TraesCS2D01G261300 chr6B 86.029 544 61 9 3113 3645 127606883 127607422 2.450000e-158 569.0
15 TraesCS2D01G261300 chr6B 77.808 730 103 35 2253 2946 127605976 127606682 4.400000e-106 396.0
16 TraesCS2D01G261300 chr6B 91.102 236 19 2 3667 3901 127607602 127607836 9.800000e-83 318.0
17 TraesCS2D01G261300 chr6B 80.488 328 40 16 4749 5054 127608985 127609310 4.720000e-56 230.0
18 TraesCS2D01G261300 chr6B 94.643 112 5 1 4565 4675 454733139 454733028 8.070000e-39 172.0
19 TraesCS2D01G261300 chr6A 85.606 1056 116 26 878 1915 71536939 71537976 0.000000e+00 1075.0
20 TraesCS2D01G261300 chr6A 86.389 529 63 6 3113 3639 71539277 71539798 2.450000e-158 569.0
21 TraesCS2D01G261300 chr6A 77.693 789 114 38 2067 2825 71538189 71538945 5.610000e-115 425.0
22 TraesCS2D01G261300 chr6A 90.173 173 14 2 4749 4920 71541228 71541398 7.900000e-54 222.0
23 TraesCS2D01G261300 chr6A 98.039 51 1 0 5185 5235 414871220 414871270 8.360000e-14 89.8
24 TraesCS2D01G261300 chr6D 85.371 1039 128 19 878 1907 56909019 56910042 0.000000e+00 1055.0
25 TraesCS2D01G261300 chr6D 84.783 552 72 7 3113 3659 56911578 56912122 1.490000e-150 544.0
26 TraesCS2D01G261300 chr6D 90.000 170 14 2 4749 4917 56913508 56913675 3.680000e-52 217.0
27 TraesCS2D01G261300 chr6D 97.196 107 2 1 4565 4671 62498102 62497997 4.820000e-41 180.0
28 TraesCS2D01G261300 chr7B 97.222 108 3 0 4565 4672 683101467 683101574 3.730000e-42 183.0
29 TraesCS2D01G261300 chr1B 96.330 109 4 0 4566 4674 15747036 15746928 4.820000e-41 180.0
30 TraesCS2D01G261300 chr5D 95.536 112 4 1 4561 4671 365693299 365693410 1.740000e-40 178.0
31 TraesCS2D01G261300 chr5D 98.148 54 1 0 5181 5234 22835690 22835637 1.800000e-15 95.3
32 TraesCS2D01G261300 chr5A 95.536 112 4 1 4561 4671 467377448 467377559 1.740000e-40 178.0
33 TraesCS2D01G261300 chr3D 96.296 108 4 0 4565 4672 536331138 536331031 1.740000e-40 178.0
34 TraesCS2D01G261300 chr7D 92.063 126 8 2 4557 4682 617094265 617094142 6.240000e-40 176.0
35 TraesCS2D01G261300 chr7A 93.913 115 7 0 4565 4679 35772594 35772708 2.240000e-39 174.0
36 TraesCS2D01G261300 chr5B 96.429 56 2 0 5180 5235 632780249 632780304 6.470000e-15 93.5
37 TraesCS2D01G261300 chr1A 96.364 55 2 0 5180 5234 377940074 377940020 2.330000e-14 91.6
38 TraesCS2D01G261300 chr1A 96.364 55 2 0 5180 5234 520760707 520760761 2.330000e-14 91.6
39 TraesCS2D01G261300 chr1A 94.643 56 3 0 5179 5234 516825563 516825618 3.010000e-13 87.9
40 TraesCS2D01G261300 chr4D 94.545 55 3 0 5181 5235 39069245 39069191 1.080000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G261300 chr2D 317942705 317948763 6058 True 11189.000000 11189 100.000000 1 6059 1 chr2D.!!$R1 6058
1 TraesCS2D01G261300 chr2A 414988570 414995213 6643 False 1828.600000 3544 92.992400 1 6057 5 chr2A.!!$F1 6056
2 TraesCS2D01G261300 chr2B 385562687 385569670 6983 True 1308.285714 2558 93.161857 1 6057 7 chr2B.!!$R1 6056
3 TraesCS2D01G261300 chr6B 127604381 127609310 4929 False 520.200000 1088 84.244400 878 5054 5 chr6B.!!$F1 4176
4 TraesCS2D01G261300 chr6A 71536939 71541398 4459 False 572.750000 1075 84.965250 878 4920 4 chr6A.!!$F2 4042
5 TraesCS2D01G261300 chr6D 56909019 56913675 4656 False 605.333333 1055 86.718000 878 4917 3 chr6D.!!$F1 4039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 321 0.032813 ATCAAAGTCTGGGGCCATGG 60.033 55.000 7.63 7.63 0.00 3.66 F
500 580 0.327576 CCCCTCCCCTAACAGTGGAT 60.328 60.000 0.00 0.00 0.00 3.41 F
796 1318 1.066858 TCATCTTTGGTGAGAGTCGCC 60.067 52.381 0.00 0.00 46.90 5.54 F
817 1339 1.141881 CGTGAGAGGATTGGACGGG 59.858 63.158 0.00 0.00 0.00 5.28 F
1116 1639 1.267121 TCACAACTAGGGTGGAGAGC 58.733 55.000 14.49 0.00 36.90 4.09 F
2185 2973 1.839354 TGCACCAGCTCATCCAATCTA 59.161 47.619 0.00 0.00 42.74 1.98 F
3315 5320 0.108585 TCAGGTTGTTGCCTCACCTC 59.891 55.000 0.00 0.00 36.58 3.85 F
4112 6505 1.142870 GCATAGTTGGGTGGCTATGGA 59.857 52.381 11.85 0.00 42.70 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1792 0.315568 GCTGGGAGCCATAGTCGTAG 59.684 60.000 0.0 0.0 34.48 3.51 R
2368 3437 2.180946 TGCCTGTCCTCATATCTGGT 57.819 50.000 0.0 0.0 0.00 4.00 R
2635 3704 1.804151 TGTGCTTCGGACATAAAGTGC 59.196 47.619 0.0 0.0 34.85 4.40 R
2939 4224 4.371624 TCAACCAATGACAAGACAGGAT 57.628 40.909 0.0 0.0 31.50 3.24 R
3131 5136 8.299570 TGTCAGAAATTAGAATTGAAAGAAGCC 58.700 33.333 0.0 0.0 0.00 4.35 R
3703 5879 1.920574 CCACGCTCAAGTGTAGAATCG 59.079 52.381 0.0 0.0 40.33 3.34 R
4626 7251 0.814010 ACGTTTCCGACAGCTTGCTT 60.814 50.000 0.0 0.0 37.88 3.91 R
5666 8335 0.610174 TCGAGCACCTGAGCATCTTT 59.390 50.000 0.0 0.0 36.85 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.519013 GTCTCCAGTTCCTTTGCCATT 58.481 47.619 0.00 0.00 0.00 3.16
45 46 1.962807 TCCAGTTCCTTTGCCATTGTG 59.037 47.619 0.00 0.00 0.00 3.33
47 48 2.288395 CCAGTTCCTTTGCCATTGTGTC 60.288 50.000 0.00 0.00 0.00 3.67
53 54 0.392336 TTTGCCATTGTGTCCTTGCC 59.608 50.000 0.00 0.00 0.00 4.52
69 70 2.607892 GCCCTGTCGTGTCAAGCAC 61.608 63.158 0.00 0.00 44.36 4.40
90 91 4.741676 CACATTTCAAGTCTTTGCCAGTTC 59.258 41.667 0.00 0.00 34.21 3.01
126 132 2.352127 GGATGTGAAAGTCTTTGCCAGC 60.352 50.000 1.60 1.89 0.00 4.85
165 211 1.133699 CAGGGATTAATGGCCTCAGCA 60.134 52.381 3.32 0.00 42.56 4.41
187 233 0.972134 TCTCTCACTGGGCTGAGTTG 59.028 55.000 2.63 0.00 39.08 3.16
193 239 2.853542 TGGGCTGAGTTGGGCTGA 60.854 61.111 0.00 0.00 0.00 4.26
208 263 1.122227 GCTGAGCAGGGAGAGAGAAT 58.878 55.000 0.00 0.00 0.00 2.40
211 266 1.836166 TGAGCAGGGAGAGAGAATTGG 59.164 52.381 0.00 0.00 0.00 3.16
212 267 1.140652 GAGCAGGGAGAGAGAATTGGG 59.859 57.143 0.00 0.00 0.00 4.12
213 268 0.465278 GCAGGGAGAGAGAATTGGGC 60.465 60.000 0.00 0.00 0.00 5.36
217 272 1.524849 GAGAGAGAATTGGGCGGGC 60.525 63.158 0.00 0.00 0.00 6.13
219 296 3.338250 AGAGAATTGGGCGGGCCA 61.338 61.111 20.63 20.63 37.98 5.36
220 297 2.123726 GAGAATTGGGCGGGCCAT 60.124 61.111 25.00 10.60 37.98 4.40
224 301 2.296814 GAATTGGGCGGGCCATTGTC 62.297 60.000 25.00 16.89 37.98 3.18
225 302 3.598747 ATTGGGCGGGCCATTGTCA 62.599 57.895 25.00 9.39 37.98 3.58
228 305 2.440065 GGCGGGCCATTGTCATCA 60.440 61.111 4.39 0.00 35.81 3.07
229 306 2.051518 GGCGGGCCATTGTCATCAA 61.052 57.895 4.39 0.00 37.98 2.57
230 307 1.603236 GGCGGGCCATTGTCATCAAA 61.603 55.000 4.39 0.00 37.11 2.69
231 308 0.179129 GCGGGCCATTGTCATCAAAG 60.179 55.000 4.39 0.00 37.11 2.77
232 309 1.176527 CGGGCCATTGTCATCAAAGT 58.823 50.000 4.39 0.00 37.11 2.66
233 310 1.133025 CGGGCCATTGTCATCAAAGTC 59.867 52.381 4.39 0.00 37.11 3.01
234 311 2.450476 GGGCCATTGTCATCAAAGTCT 58.550 47.619 4.39 0.00 37.11 3.24
235 312 2.165030 GGGCCATTGTCATCAAAGTCTG 59.835 50.000 4.39 0.00 37.11 3.51
236 313 2.165030 GGCCATTGTCATCAAAGTCTGG 59.835 50.000 0.00 0.00 37.11 3.86
237 314 2.165030 GCCATTGTCATCAAAGTCTGGG 59.835 50.000 0.00 0.00 37.11 4.45
238 315 2.756760 CCATTGTCATCAAAGTCTGGGG 59.243 50.000 0.00 0.00 37.11 4.96
239 316 1.909700 TTGTCATCAAAGTCTGGGGC 58.090 50.000 0.00 0.00 0.00 5.80
240 317 0.038166 TGTCATCAAAGTCTGGGGCC 59.962 55.000 0.00 0.00 0.00 5.80
241 318 0.038166 GTCATCAAAGTCTGGGGCCA 59.962 55.000 4.39 0.00 0.00 5.36
242 319 1.002069 TCATCAAAGTCTGGGGCCAT 58.998 50.000 4.39 0.00 0.00 4.40
243 320 1.108776 CATCAAAGTCTGGGGCCATG 58.891 55.000 4.39 0.00 0.00 3.66
244 321 0.032813 ATCAAAGTCTGGGGCCATGG 60.033 55.000 7.63 7.63 0.00 3.66
245 322 2.037847 AAAGTCTGGGGCCATGGC 59.962 61.111 29.47 29.47 41.06 4.40
377 457 1.224039 GCCTTGCTCTGCATCTCCT 59.776 57.895 0.00 0.00 38.76 3.69
382 462 2.795110 GCTCTGCATCTCCTCGCCT 61.795 63.158 0.00 0.00 0.00 5.52
392 472 0.591170 CTCCTCGCCTTCGATCTCTC 59.409 60.000 0.00 0.00 44.56 3.20
439 519 4.504132 CTGCCGAGGTACAGCTTC 57.496 61.111 0.00 0.00 0.00 3.86
440 520 1.153549 CTGCCGAGGTACAGCTTCC 60.154 63.158 0.00 0.00 0.00 3.46
441 521 2.202756 GCCGAGGTACAGCTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
442 522 3.003113 GCCGAGGTACAGCTTCCGT 62.003 63.158 0.00 0.00 0.00 4.69
443 523 1.139095 CCGAGGTACAGCTTCCGTC 59.861 63.158 0.00 0.00 0.00 4.79
444 524 1.139095 CGAGGTACAGCTTCCGTCC 59.861 63.158 0.00 0.00 0.00 4.79
445 525 1.516423 GAGGTACAGCTTCCGTCCC 59.484 63.158 0.00 0.00 0.00 4.46
446 526 2.183555 GGTACAGCTTCCGTCCCG 59.816 66.667 0.00 0.00 0.00 5.14
469 549 3.615811 TCCCCTCAGCCCACTCCT 61.616 66.667 0.00 0.00 0.00 3.69
470 550 2.612115 CCCCTCAGCCCACTCCTT 60.612 66.667 0.00 0.00 0.00 3.36
471 551 2.674220 CCCCTCAGCCCACTCCTTC 61.674 68.421 0.00 0.00 0.00 3.46
472 552 2.674220 CCCTCAGCCCACTCCTTCC 61.674 68.421 0.00 0.00 0.00 3.46
473 553 2.674220 CCTCAGCCCACTCCTTCCC 61.674 68.421 0.00 0.00 0.00 3.97
474 554 2.610859 TCAGCCCACTCCTTCCCC 60.611 66.667 0.00 0.00 0.00 4.81
475 555 2.612115 CAGCCCACTCCTTCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
476 556 2.285743 AGCCCACTCCTTCCCCTC 60.286 66.667 0.00 0.00 0.00 4.30
477 557 3.412408 GCCCACTCCTTCCCCTCC 61.412 72.222 0.00 0.00 0.00 4.30
478 558 2.692741 CCCACTCCTTCCCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
479 559 2.692741 CCACTCCTTCCCCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
486 566 3.707189 TTCCCCTCCCCTCCCCTC 61.707 72.222 0.00 0.00 0.00 4.30
492 572 2.204885 TCCCCTCCCCTCCCCTAA 60.205 66.667 0.00 0.00 0.00 2.69
495 575 1.384643 CCCTCCCCTCCCCTAACAG 60.385 68.421 0.00 0.00 0.00 3.16
500 580 0.327576 CCCCTCCCCTAACAGTGGAT 60.328 60.000 0.00 0.00 0.00 3.41
504 584 2.780010 CCTCCCCTAACAGTGGATTCAT 59.220 50.000 0.00 0.00 0.00 2.57
513 593 3.206150 ACAGTGGATTCATTCGTATGCC 58.794 45.455 0.00 0.00 0.00 4.40
514 594 3.205338 CAGTGGATTCATTCGTATGCCA 58.795 45.455 0.00 0.00 0.00 4.92
515 595 3.817084 CAGTGGATTCATTCGTATGCCAT 59.183 43.478 3.82 0.00 0.00 4.40
529 609 7.477144 TCGTATGCCATCAACTTTGTAATAG 57.523 36.000 0.00 0.00 0.00 1.73
535 615 6.377996 TGCCATCAACTTTGTAATAGCTCATT 59.622 34.615 0.00 0.00 0.00 2.57
554 634 4.822896 TCATTGGTTACTGGCGTAGTTTTT 59.177 37.500 0.00 0.00 40.89 1.94
621 1143 4.715520 CAAATATTGCGACGATACTGCT 57.284 40.909 0.00 0.00 0.00 4.24
643 1165 6.098017 GCTTTCGTACTAGGTTGAGTATGTT 58.902 40.000 0.00 0.00 39.17 2.71
791 1313 4.096081 GGCTTGATTCATCTTTGGTGAGAG 59.904 45.833 0.00 0.00 0.00 3.20
796 1318 1.066858 TCATCTTTGGTGAGAGTCGCC 60.067 52.381 0.00 0.00 46.90 5.54
815 1337 3.330766 GTCGTGAGAGGATTGGACG 57.669 57.895 0.00 0.00 43.49 4.79
817 1339 1.141881 CGTGAGAGGATTGGACGGG 59.858 63.158 0.00 0.00 0.00 5.28
844 1366 3.749088 TCATTTGTGTAGCCACCTAAACG 59.251 43.478 0.00 0.00 41.09 3.60
845 1367 2.914695 TTGTGTAGCCACCTAAACGT 57.085 45.000 0.00 0.00 41.09 3.99
851 1373 2.738013 AGCCACCTAAACGTAGTGAC 57.262 50.000 8.90 0.00 45.00 3.67
861 1383 2.248280 ACGTAGTGACAACAATGCCA 57.752 45.000 0.00 0.00 42.51 4.92
868 1390 3.004734 AGTGACAACAATGCCAGCTAAAC 59.995 43.478 0.00 0.00 0.00 2.01
879 1401 2.672195 GCCAGCTAAACTGTGAATTGGC 60.672 50.000 7.51 7.51 45.68 4.52
974 1497 4.885907 CCATCCAGTAGATTGTGAATTGCT 59.114 41.667 0.00 0.00 30.59 3.91
981 1504 6.591448 CAGTAGATTGTGAATTGCTGTAGACA 59.409 38.462 0.00 0.00 0.00 3.41
1116 1639 1.267121 TCACAACTAGGGTGGAGAGC 58.733 55.000 14.49 0.00 36.90 4.09
1164 1687 1.994779 CGCAAATCAATTCAACAGGCC 59.005 47.619 0.00 0.00 0.00 5.19
1269 1792 2.580815 GCATTTTGCTCCTGCCCC 59.419 61.111 0.00 0.00 40.96 5.80
1844 2498 4.631131 TCTGACACATTGGACTGTAACTG 58.369 43.478 0.00 0.00 0.00 3.16
2176 2964 2.192711 TGCTTGTGCACCAGCTCA 59.807 55.556 34.56 18.98 45.31 4.26
2185 2973 1.839354 TGCACCAGCTCATCCAATCTA 59.161 47.619 0.00 0.00 42.74 1.98
2268 3336 8.752005 AACAATTATGTACTGGCTCATTGTAT 57.248 30.769 0.00 0.00 39.40 2.29
2368 3437 5.337894 CCCTTTGCTAGAGATTGTCTCAGAA 60.338 44.000 9.42 0.00 45.73 3.02
2635 3704 8.008279 GTGTTATGATCTGATGATTCGTCAATG 58.992 37.037 9.74 0.19 32.19 2.82
2690 3771 4.446994 AAGCCTAGATTTCTTGCAAAGC 57.553 40.909 0.00 0.00 45.70 3.51
2939 4224 9.594478 GAGTTATTTTTCTTTCCCTTCAAAACA 57.406 29.630 0.00 0.00 0.00 2.83
3315 5320 0.108585 TCAGGTTGTTGCCTCACCTC 59.891 55.000 0.00 0.00 36.58 3.85
3703 5879 2.489722 GTCCCAGGTTGCTCATTTCTTC 59.510 50.000 0.00 0.00 0.00 2.87
4112 6505 1.142870 GCATAGTTGGGTGGCTATGGA 59.857 52.381 11.85 0.00 42.70 3.41
4212 6611 8.220755 TGCACAAGAATGAACTTTAGTACTTT 57.779 30.769 0.00 0.00 0.00 2.66
4439 6848 5.063564 GGTCACACTAGAACCATTTCGAATC 59.936 44.000 0.00 0.00 36.78 2.52
4440 6849 5.637810 GTCACACTAGAACCATTTCGAATCA 59.362 40.000 0.00 0.00 36.78 2.57
4480 6890 6.152379 GTCGTCAGATATTATGATCACTGCA 58.848 40.000 0.00 0.00 0.00 4.41
4531 7156 7.324178 AGTAGTAACAAACATCCTGAAGCTAG 58.676 38.462 0.00 0.00 0.00 3.42
4570 7195 2.210961 GCGCCCTTCTGATTTACTACC 58.789 52.381 0.00 0.00 0.00 3.18
4572 7197 3.718815 CGCCCTTCTGATTTACTACCTC 58.281 50.000 0.00 0.00 0.00 3.85
4574 7199 4.698575 GCCCTTCTGATTTACTACCTCTG 58.301 47.826 0.00 0.00 0.00 3.35
4576 7201 5.338463 GCCCTTCTGATTTACTACCTCTGTT 60.338 44.000 0.00 0.00 0.00 3.16
4580 7205 9.892130 CCTTCTGATTTACTACCTCTGTTTATT 57.108 33.333 0.00 0.00 0.00 1.40
4609 7234 6.526566 AAGACGTTTTAGACATTCAGACAC 57.473 37.500 0.00 0.00 0.00 3.67
4611 7236 5.692204 AGACGTTTTAGACATTCAGACACTG 59.308 40.000 0.00 0.00 0.00 3.66
4612 7237 5.357257 ACGTTTTAGACATTCAGACACTGT 58.643 37.500 0.00 0.00 32.61 3.55
4614 7239 6.018994 ACGTTTTAGACATTCAGACACTGTTC 60.019 38.462 0.00 0.00 32.61 3.18
4616 7241 7.465379 CGTTTTAGACATTCAGACACTGTTCAA 60.465 37.037 0.00 0.00 32.61 2.69
4617 7242 7.857734 TTTAGACATTCAGACACTGTTCAAA 57.142 32.000 0.00 0.00 32.61 2.69
4618 7243 7.857734 TTAGACATTCAGACACTGTTCAAAA 57.142 32.000 0.00 0.00 32.61 2.44
4619 7244 6.124088 AGACATTCAGACACTGTTCAAAAC 57.876 37.500 0.00 0.00 32.61 2.43
4620 7245 5.647658 AGACATTCAGACACTGTTCAAAACA 59.352 36.000 0.00 0.00 39.52 2.83
4633 7258 4.862018 TGTTCAAAACAGTACAAAGCAAGC 59.138 37.500 0.00 0.00 36.25 4.01
4634 7259 4.981806 TCAAAACAGTACAAAGCAAGCT 57.018 36.364 0.00 0.00 0.00 3.74
4635 7260 4.671377 TCAAAACAGTACAAAGCAAGCTG 58.329 39.130 0.00 0.00 0.00 4.24
4636 7261 4.157656 TCAAAACAGTACAAAGCAAGCTGT 59.842 37.500 0.00 0.00 41.51 4.40
4637 7262 3.971032 AACAGTACAAAGCAAGCTGTC 57.029 42.857 0.00 0.00 39.19 3.51
4638 7263 1.867233 ACAGTACAAAGCAAGCTGTCG 59.133 47.619 0.00 0.00 35.78 4.35
4639 7264 1.195448 CAGTACAAAGCAAGCTGTCGG 59.805 52.381 0.00 0.00 0.00 4.79
4640 7265 1.070134 AGTACAAAGCAAGCTGTCGGA 59.930 47.619 0.00 0.00 0.00 4.55
4641 7266 1.871039 GTACAAAGCAAGCTGTCGGAA 59.129 47.619 0.00 0.00 0.00 4.30
4642 7267 1.388547 ACAAAGCAAGCTGTCGGAAA 58.611 45.000 0.00 0.00 0.00 3.13
4643 7268 1.065551 ACAAAGCAAGCTGTCGGAAAC 59.934 47.619 0.00 0.00 0.00 2.78
4664 7289 9.124807 GGAAACGTCTTATAAAAACAAATGGAG 57.875 33.333 0.00 0.00 0.00 3.86
4665 7290 9.124807 GAAACGTCTTATAAAAACAAATGGAGG 57.875 33.333 0.00 0.00 0.00 4.30
4666 7291 7.153217 ACGTCTTATAAAAACAAATGGAGGG 57.847 36.000 0.00 0.00 0.00 4.30
4667 7292 6.943718 ACGTCTTATAAAAACAAATGGAGGGA 59.056 34.615 0.00 0.00 0.00 4.20
4668 7293 7.120726 ACGTCTTATAAAAACAAATGGAGGGAG 59.879 37.037 0.00 0.00 0.00 4.30
4703 7328 7.846066 ACTTCTACTGTAGCAGATGAGATTTT 58.154 34.615 19.06 0.00 35.18 1.82
5133 7791 8.375506 AGTGAACCATCAGATTAACTAAAGTGA 58.624 33.333 0.00 0.00 35.88 3.41
5139 7797 7.611855 CCATCAGATTAACTAAAGTGAAACCCT 59.388 37.037 0.00 0.00 37.80 4.34
5282 7950 7.582435 TTACATTTCGCTCTCTTTTCACTAG 57.418 36.000 0.00 0.00 0.00 2.57
5367 8035 5.007136 GTGTTTGAGCTGATAATAGACTGGC 59.993 44.000 0.00 0.00 0.00 4.85
5380 8048 4.312231 CTGGCGTGGCGTGTTGTG 62.312 66.667 0.00 0.00 0.00 3.33
5519 8188 7.012610 TGTGGCTTTACTTTTTGAACTACTACC 59.987 37.037 0.00 0.00 0.00 3.18
5604 8273 6.729295 GCTTAATTTTCGGTAATACGCGTATC 59.271 38.462 30.32 19.08 0.00 2.24
5708 8377 1.803922 CGTGCAGATGTTCGCGGTA 60.804 57.895 6.13 0.00 33.14 4.02
5785 8455 7.087639 TCTTTTTCGAAGTTTCTTTTGAAGCA 58.912 30.769 0.00 0.00 41.30 3.91
5813 8490 5.514274 TTTTGTCACAACCTCCTCAAATC 57.486 39.130 0.00 0.00 0.00 2.17
5815 8492 4.437682 TGTCACAACCTCCTCAAATCTT 57.562 40.909 0.00 0.00 0.00 2.40
5854 8531 3.405823 TGCACTCACATCACTCATTCA 57.594 42.857 0.00 0.00 0.00 2.57
5864 8541 2.362736 TCACTCATTCAGGCATCTTGC 58.637 47.619 0.00 0.00 44.08 4.01
5942 8619 2.511600 CCGACCAGGCACCGAATC 60.512 66.667 0.00 0.00 0.00 2.52
5943 8620 2.885644 CGACCAGGCACCGAATCG 60.886 66.667 0.00 0.00 0.00 3.34
6057 8736 8.658499 ACATTATACTTTCGGTAAGTGATTCC 57.342 34.615 9.90 0.00 46.46 3.01
6058 8737 8.483758 ACATTATACTTTCGGTAAGTGATTCCT 58.516 33.333 9.90 0.00 46.46 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.425592 CGACAGGGCAAGGACACA 59.574 61.111 0.00 0.00 0.00 3.72
45 46 1.668151 GACACGACAGGGCAAGGAC 60.668 63.158 0.00 0.00 0.00 3.85
47 48 1.227823 TTGACACGACAGGGCAAGG 60.228 57.895 0.00 0.00 0.00 3.61
69 70 5.192327 AGAACTGGCAAAGACTTGAAATG 57.808 39.130 0.00 0.00 34.14 2.32
105 106 2.352127 GCTGGCAAAGACTTTCACATCC 60.352 50.000 0.00 0.00 0.00 3.51
106 107 2.555757 AGCTGGCAAAGACTTTCACATC 59.444 45.455 0.00 0.00 0.00 3.06
108 109 2.057137 AGCTGGCAAAGACTTTCACA 57.943 45.000 0.00 0.00 0.00 3.58
109 110 3.403038 TCTAGCTGGCAAAGACTTTCAC 58.597 45.455 0.00 0.00 0.00 3.18
110 111 3.668447 CTCTAGCTGGCAAAGACTTTCA 58.332 45.455 0.00 0.00 0.00 2.69
111 112 2.418280 GCTCTAGCTGGCAAAGACTTTC 59.582 50.000 0.00 0.00 38.21 2.62
126 132 1.241315 GCCCTCGCTCTAGGCTCTAG 61.241 65.000 0.00 3.55 43.62 2.43
144 158 1.613836 CTGAGGCCATTAATCCCTGC 58.386 55.000 5.01 0.00 0.00 4.85
165 211 1.006998 ACTCAGCCCAGTGAGAGAGAT 59.993 52.381 7.62 0.00 46.02 2.75
187 233 2.364842 TCTCTCCCTGCTCAGCCC 60.365 66.667 0.00 0.00 0.00 5.19
193 239 1.211456 CCCAATTCTCTCTCCCTGCT 58.789 55.000 0.00 0.00 0.00 4.24
211 266 1.603236 TTTGATGACAATGGCCCGCC 61.603 55.000 0.00 0.00 35.85 6.13
212 267 0.179129 CTTTGATGACAATGGCCCGC 60.179 55.000 0.00 0.00 35.85 6.13
213 268 1.133025 GACTTTGATGACAATGGCCCG 59.867 52.381 0.00 0.00 34.43 6.13
217 272 2.756760 CCCCAGACTTTGATGACAATGG 59.243 50.000 0.00 0.00 36.09 3.16
219 296 2.450476 GCCCCAGACTTTGATGACAAT 58.550 47.619 0.00 0.00 35.85 2.71
220 297 1.547675 GGCCCCAGACTTTGATGACAA 60.548 52.381 0.00 0.00 0.00 3.18
224 301 1.108776 CATGGCCCCAGACTTTGATG 58.891 55.000 0.00 0.00 0.00 3.07
225 302 0.032813 CCATGGCCCCAGACTTTGAT 60.033 55.000 0.00 0.00 0.00 2.57
228 305 2.037847 GCCATGGCCCCAGACTTT 59.962 61.111 27.24 0.00 34.56 2.66
249 326 0.112412 GAGCTGGACCCCTGGAAAAA 59.888 55.000 0.00 0.00 0.00 1.94
250 327 1.767692 GAGCTGGACCCCTGGAAAA 59.232 57.895 0.00 0.00 0.00 2.29
278 355 6.283694 TCCTTTCCAGACTAATCATCAATCG 58.716 40.000 0.00 0.00 0.00 3.34
382 462 1.595466 GCCGGTAGAGAGAGATCGAA 58.405 55.000 1.90 0.00 0.00 3.71
457 537 2.610859 GGGGAAGGAGTGGGCTGA 60.611 66.667 0.00 0.00 0.00 4.26
459 539 2.285743 GAGGGGAAGGAGTGGGCT 60.286 66.667 0.00 0.00 0.00 5.19
460 540 3.412408 GGAGGGGAAGGAGTGGGC 61.412 72.222 0.00 0.00 0.00 5.36
464 544 2.788589 GAGGGGAGGGGAAGGAGT 59.211 66.667 0.00 0.00 0.00 3.85
465 545 2.040359 GGAGGGGAGGGGAAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
469 549 3.707189 GAGGGGAGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
474 554 2.341677 TTAGGGGAGGGGAGGGGAG 61.342 68.421 0.00 0.00 0.00 4.30
475 555 2.204885 TTAGGGGAGGGGAGGGGA 60.205 66.667 0.00 0.00 0.00 4.81
476 556 2.039724 GTTAGGGGAGGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
477 557 1.384643 CTGTTAGGGGAGGGGAGGG 60.385 68.421 0.00 0.00 0.00 4.30
478 558 0.983378 CACTGTTAGGGGAGGGGAGG 60.983 65.000 0.00 0.00 0.00 4.30
479 559 0.983378 CCACTGTTAGGGGAGGGGAG 60.983 65.000 0.00 0.00 43.10 4.30
486 566 3.206150 CGAATGAATCCACTGTTAGGGG 58.794 50.000 0.00 0.00 41.27 4.79
492 572 3.206150 GGCATACGAATGAATCCACTGT 58.794 45.455 0.00 0.00 34.84 3.55
495 575 3.814842 TGATGGCATACGAATGAATCCAC 59.185 43.478 0.00 0.00 34.84 4.02
500 580 5.182950 ACAAAGTTGATGGCATACGAATGAA 59.817 36.000 0.00 0.00 34.84 2.57
504 584 6.751514 ATTACAAAGTTGATGGCATACGAA 57.248 33.333 0.00 0.00 0.00 3.85
513 593 7.765307 ACCAATGAGCTATTACAAAGTTGATG 58.235 34.615 0.00 0.00 0.00 3.07
514 594 7.944729 ACCAATGAGCTATTACAAAGTTGAT 57.055 32.000 0.00 0.00 0.00 2.57
515 595 7.759489 AACCAATGAGCTATTACAAAGTTGA 57.241 32.000 0.00 0.00 0.00 3.18
529 609 1.933853 CTACGCCAGTAACCAATGAGC 59.066 52.381 0.00 0.00 31.59 4.26
554 634 9.647797 TGAGCTATTACGAAGTTTCTTGAATAA 57.352 29.630 0.00 0.00 37.78 1.40
562 646 5.972382 ACGAGATGAGCTATTACGAAGTTTC 59.028 40.000 0.00 0.00 37.78 2.78
621 1143 7.596248 GTCAAACATACTCAACCTAGTACGAAA 59.404 37.037 0.00 0.00 34.87 3.46
643 1165 4.277476 AGACAAAACCACCATGAAGTCAA 58.723 39.130 0.00 0.00 0.00 3.18
688 1210 5.239525 ACTTGATTGCTGGTAACTCTGAAAC 59.760 40.000 0.00 0.00 37.61 2.78
791 1313 2.267681 AATCCTCTCACGACGGCGAC 62.268 60.000 22.49 6.59 41.64 5.19
796 1318 0.523546 CGTCCAATCCTCTCACGACG 60.524 60.000 0.00 0.00 37.39 5.12
797 1319 0.179134 CCGTCCAATCCTCTCACGAC 60.179 60.000 0.00 0.00 32.08 4.34
798 1320 1.320344 CCCGTCCAATCCTCTCACGA 61.320 60.000 0.00 0.00 32.08 4.35
815 1337 4.993905 GTGGCTACACAAATGATAAACCC 58.006 43.478 0.00 0.00 46.90 4.11
844 1366 2.154462 AGCTGGCATTGTTGTCACTAC 58.846 47.619 0.00 0.00 32.96 2.73
845 1367 2.566833 AGCTGGCATTGTTGTCACTA 57.433 45.000 0.00 0.00 32.96 2.74
861 1383 4.401925 AGAAGCCAATTCACAGTTTAGCT 58.598 39.130 0.00 0.00 40.67 3.32
868 1390 4.778534 AACATGAGAAGCCAATTCACAG 57.221 40.909 0.00 0.00 41.04 3.66
879 1401 6.017275 GCCAGATTTCAGGATAACATGAGAAG 60.017 42.308 0.00 0.00 38.07 2.85
974 1497 2.875672 GCCAATGTGCCTCTTGTCTACA 60.876 50.000 0.00 0.00 0.00 2.74
1011 1534 2.025226 TGTTCTGATCCCTCGTAGGAGT 60.025 50.000 11.31 0.00 39.95 3.85
1116 1639 1.153745 GGGCTCACTAGTCTGCACG 60.154 63.158 15.74 0.00 0.00 5.34
1185 1708 3.108144 CGCTTCAAAACCTTGTGTCTTG 58.892 45.455 0.00 0.00 33.94 3.02
1269 1792 0.315568 GCTGGGAGCCATAGTCGTAG 59.684 60.000 0.00 0.00 34.48 3.51
1844 2498 9.050601 CAATTCCCTGTATTACTTGATCTTCTC 57.949 37.037 0.00 0.00 0.00 2.87
2170 2957 5.211174 TCTGTCATAGATTGGATGAGCTG 57.789 43.478 0.00 0.00 34.02 4.24
2268 3336 8.685838 AATGACTTTAAAGTTGTAGCTACCAA 57.314 30.769 21.40 12.15 39.88 3.67
2368 3437 2.180946 TGCCTGTCCTCATATCTGGT 57.819 50.000 0.00 0.00 0.00 4.00
2635 3704 1.804151 TGTGCTTCGGACATAAAGTGC 59.196 47.619 0.00 0.00 34.85 4.40
2939 4224 4.371624 TCAACCAATGACAAGACAGGAT 57.628 40.909 0.00 0.00 31.50 3.24
3131 5136 8.299570 TGTCAGAAATTAGAATTGAAAGAAGCC 58.700 33.333 0.00 0.00 0.00 4.35
3315 5320 3.303229 GTGAAAACAAAAGTCAACCAGCG 59.697 43.478 0.00 0.00 0.00 5.18
3703 5879 1.920574 CCACGCTCAAGTGTAGAATCG 59.079 52.381 0.00 0.00 40.33 3.34
3812 5988 4.887748 TCAGAAAGCTCAAGAGGTGTTAG 58.112 43.478 2.14 0.00 39.39 2.34
4212 6611 9.748708 GGCATGCAAAATATTTCAGAATAACTA 57.251 29.630 21.36 0.00 31.82 2.24
4264 6663 7.174426 GGTACTAAAACCTAACAAGACTGCAAT 59.826 37.037 0.00 0.00 36.53 3.56
4439 6848 4.506288 TGACGACATTCAAACTACTGTGTG 59.494 41.667 0.00 0.00 32.78 3.82
4440 6849 4.689071 TGACGACATTCAAACTACTGTGT 58.311 39.130 0.00 0.00 0.00 3.72
4480 6890 4.031129 CCTCAGCACAGCAGGGCT 62.031 66.667 0.00 0.00 42.06 5.19
4584 7209 8.088981 AGTGTCTGAATGTCTAAAACGTCTTAT 58.911 33.333 0.00 0.00 0.00 1.73
4586 7211 6.201044 CAGTGTCTGAATGTCTAAAACGTCTT 59.799 38.462 0.00 0.00 32.44 3.01
4587 7212 5.692204 CAGTGTCTGAATGTCTAAAACGTCT 59.308 40.000 0.00 0.00 32.44 4.18
4588 7213 5.462398 ACAGTGTCTGAATGTCTAAAACGTC 59.538 40.000 3.70 0.00 35.18 4.34
4589 7214 5.357257 ACAGTGTCTGAATGTCTAAAACGT 58.643 37.500 3.70 0.00 35.18 3.99
4590 7215 5.907197 ACAGTGTCTGAATGTCTAAAACG 57.093 39.130 3.70 0.00 35.18 3.60
4591 7216 7.246674 TGAACAGTGTCTGAATGTCTAAAAC 57.753 36.000 0.00 0.00 35.18 2.43
4592 7217 7.857734 TTGAACAGTGTCTGAATGTCTAAAA 57.142 32.000 0.00 0.00 35.18 1.52
4594 7219 7.335673 TGTTTTGAACAGTGTCTGAATGTCTAA 59.664 33.333 0.00 0.00 36.25 2.10
4596 7221 5.647658 TGTTTTGAACAGTGTCTGAATGTCT 59.352 36.000 0.00 0.00 36.25 3.41
4598 7223 5.895636 TGTTTTGAACAGTGTCTGAATGT 57.104 34.783 0.00 0.00 36.25 2.71
4611 7236 5.004726 CAGCTTGCTTTGTACTGTTTTGAAC 59.995 40.000 0.00 0.00 0.00 3.18
4612 7237 5.101628 CAGCTTGCTTTGTACTGTTTTGAA 58.898 37.500 0.00 0.00 0.00 2.69
4614 7239 4.423732 ACAGCTTGCTTTGTACTGTTTTG 58.576 39.130 0.00 0.00 38.38 2.44
4616 7241 3.242739 CGACAGCTTGCTTTGTACTGTTT 60.243 43.478 0.00 0.00 41.45 2.83
4617 7242 2.287915 CGACAGCTTGCTTTGTACTGTT 59.712 45.455 0.00 0.00 41.45 3.16
4618 7243 1.867233 CGACAGCTTGCTTTGTACTGT 59.133 47.619 0.00 0.00 43.93 3.55
4619 7244 1.195448 CCGACAGCTTGCTTTGTACTG 59.805 52.381 0.00 0.00 0.00 2.74
4620 7245 1.070134 TCCGACAGCTTGCTTTGTACT 59.930 47.619 0.00 0.00 0.00 2.73
4621 7246 1.508632 TCCGACAGCTTGCTTTGTAC 58.491 50.000 0.00 0.00 0.00 2.90
4622 7247 2.248280 TTCCGACAGCTTGCTTTGTA 57.752 45.000 0.00 0.00 0.00 2.41
4623 7248 1.065551 GTTTCCGACAGCTTGCTTTGT 59.934 47.619 0.00 0.00 0.00 2.83
4624 7249 1.758783 GTTTCCGACAGCTTGCTTTG 58.241 50.000 0.00 0.00 0.00 2.77
4626 7251 0.814010 ACGTTTCCGACAGCTTGCTT 60.814 50.000 0.00 0.00 37.88 3.91
4627 7252 1.222115 GACGTTTCCGACAGCTTGCT 61.222 55.000 0.00 0.00 37.88 3.91
4628 7253 1.204312 GACGTTTCCGACAGCTTGC 59.796 57.895 0.00 0.00 37.88 4.01
4629 7254 1.217882 AAGACGTTTCCGACAGCTTG 58.782 50.000 0.00 0.00 37.88 4.01
4630 7255 2.806608 TAAGACGTTTCCGACAGCTT 57.193 45.000 0.00 0.00 37.88 3.74
4631 7256 4.445452 TTATAAGACGTTTCCGACAGCT 57.555 40.909 0.00 0.00 37.88 4.24
4632 7257 5.520022 TTTTATAAGACGTTTCCGACAGC 57.480 39.130 0.00 0.00 37.88 4.40
4633 7258 6.879962 TGTTTTTATAAGACGTTTCCGACAG 58.120 36.000 0.00 0.00 37.88 3.51
4634 7259 6.841443 TGTTTTTATAAGACGTTTCCGACA 57.159 33.333 0.00 0.00 37.88 4.35
4635 7260 8.624028 CATTTGTTTTTATAAGACGTTTCCGAC 58.376 33.333 0.00 0.00 37.88 4.79
4636 7261 7.804129 CCATTTGTTTTTATAAGACGTTTCCGA 59.196 33.333 0.00 0.00 37.88 4.55
4637 7262 7.804129 TCCATTTGTTTTTATAAGACGTTTCCG 59.196 33.333 0.00 0.00 40.83 4.30
4638 7263 9.124807 CTCCATTTGTTTTTATAAGACGTTTCC 57.875 33.333 0.00 0.00 0.00 3.13
4639 7264 9.124807 CCTCCATTTGTTTTTATAAGACGTTTC 57.875 33.333 0.00 0.00 0.00 2.78
4640 7265 8.085909 CCCTCCATTTGTTTTTATAAGACGTTT 58.914 33.333 0.00 0.00 0.00 3.60
4641 7266 7.449086 TCCCTCCATTTGTTTTTATAAGACGTT 59.551 33.333 0.00 0.00 0.00 3.99
4642 7267 6.943718 TCCCTCCATTTGTTTTTATAAGACGT 59.056 34.615 0.00 0.00 0.00 4.34
4643 7268 7.120726 ACTCCCTCCATTTGTTTTTATAAGACG 59.879 37.037 0.00 0.00 0.00 4.18
4644 7269 8.349568 ACTCCCTCCATTTGTTTTTATAAGAC 57.650 34.615 0.00 0.00 0.00 3.01
4645 7270 9.457436 GTACTCCCTCCATTTGTTTTTATAAGA 57.543 33.333 0.00 0.00 0.00 2.10
4646 7271 9.462606 AGTACTCCCTCCATTTGTTTTTATAAG 57.537 33.333 0.00 0.00 0.00 1.73
4651 7276 9.990868 AATATAGTACTCCCTCCATTTGTTTTT 57.009 29.630 0.00 0.00 0.00 1.94
4654 7279 9.448587 AGTAATATAGTACTCCCTCCATTTGTT 57.551 33.333 7.04 0.00 27.56 2.83
4655 7280 9.448587 AAGTAATATAGTACTCCCTCCATTTGT 57.551 33.333 12.92 0.00 33.05 2.83
4656 7281 9.930693 GAAGTAATATAGTACTCCCTCCATTTG 57.069 37.037 12.92 0.00 33.05 2.32
4657 7282 9.900112 AGAAGTAATATAGTACTCCCTCCATTT 57.100 33.333 12.92 0.00 33.05 2.32
4659 7284 9.978336 GTAGAAGTAATATAGTACTCCCTCCAT 57.022 37.037 12.92 0.00 33.05 3.41
4660 7285 9.180282 AGTAGAAGTAATATAGTACTCCCTCCA 57.820 37.037 12.92 0.00 33.05 3.86
4661 7286 9.452287 CAGTAGAAGTAATATAGTACTCCCTCC 57.548 40.741 12.92 5.55 33.05 4.30
4703 7328 4.016444 CCAGGCAGAAATTAAAGGCACTA 58.984 43.478 0.00 0.00 38.49 2.74
5133 7791 2.597510 GGTTCCGCTGCAGGGTTT 60.598 61.111 26.94 0.00 0.00 3.27
5282 7950 4.749245 TGCTTTTCGAAAATCCACTCTC 57.251 40.909 22.73 6.57 0.00 3.20
5295 7963 3.624326 TGTGAACTGGATTGCTTTTCG 57.376 42.857 0.00 0.00 0.00 3.46
5367 8035 2.606961 ATCTGCACAACACGCCACG 61.607 57.895 0.00 0.00 0.00 4.94
5380 8048 3.847467 GCATACGCAACTGATTCATCTGC 60.847 47.826 9.12 9.12 38.36 4.26
5446 8115 8.825667 TCCAAATTAAAAATGAGTTTACAGCC 57.174 30.769 0.00 0.00 0.00 4.85
5476 8145 3.198068 CCACATTCAGGATCGTAACTGG 58.802 50.000 0.00 0.00 35.47 4.00
5519 8188 4.918810 ACAAACTCAAGGGCTTAACTTG 57.081 40.909 0.00 0.00 45.08 3.16
5666 8335 0.610174 TCGAGCACCTGAGCATCTTT 59.390 50.000 0.00 0.00 36.85 2.52
5696 8365 2.004017 TGTCCAAATACCGCGAACATC 58.996 47.619 8.23 0.00 0.00 3.06
5708 8377 6.443849 TGTCTAAGGTCCTAGAATGTCCAAAT 59.556 38.462 0.00 0.00 29.74 2.32
5813 8490 4.201485 GCAAAACTTCGTGTGTGTTTGAAG 60.201 41.667 0.00 0.00 42.66 3.02
5815 8492 3.238441 GCAAAACTTCGTGTGTGTTTGA 58.762 40.909 0.00 0.00 34.63 2.69
5864 8541 6.956299 AAGAATCTGAAATTTTTCGGCATG 57.044 33.333 6.94 0.00 42.05 4.06
5942 8619 4.023193 AGTTCAAAATTAAGGAGTGTGGCG 60.023 41.667 0.00 0.00 0.00 5.69
5943 8620 5.453567 AGTTCAAAATTAAGGAGTGTGGC 57.546 39.130 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.