Multiple sequence alignment - TraesCS2D01G260500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G260500 chr2D 100.000 6124 0 0 1 6124 316659121 316652998 0.000000e+00 11310.0
1 TraesCS2D01G260500 chr2D 86.076 632 79 8 2 627 377124414 377125042 0.000000e+00 671.0
2 TraesCS2D01G260500 chr2D 85.036 274 31 8 5739 6008 172404021 172403754 2.810000e-68 270.0
3 TraesCS2D01G260500 chr2D 83.505 97 14 1 5558 5654 315865772 315865866 8.450000e-14 89.8
4 TraesCS2D01G260500 chr2A 95.557 5537 149 40 1 5513 418401451 418395988 0.000000e+00 8772.0
5 TraesCS2D01G260500 chr2A 91.441 222 14 1 5908 6124 418394808 418394587 3.590000e-77 300.0
6 TraesCS2D01G260500 chr2A 90.909 209 14 1 5512 5715 418395839 418395631 6.050000e-70 276.0
7 TraesCS2D01G260500 chr2A 91.781 146 11 1 5740 5885 418395231 418395087 1.040000e-47 202.0
8 TraesCS2D01G260500 chr2A 84.694 98 13 1 5558 5655 419198633 419198538 5.050000e-16 97.1
9 TraesCS2D01G260500 chr2B 97.152 4846 101 20 679 5513 384672967 384677786 0.000000e+00 8150.0
10 TraesCS2D01G260500 chr2B 88.872 674 66 8 1 669 384653927 384654596 0.000000e+00 821.0
11 TraesCS2D01G260500 chr2B 89.873 395 31 2 5739 6124 384678136 384678530 3.300000e-137 499.0
12 TraesCS2D01G260500 chr2B 92.130 216 13 2 5512 5724 384677935 384678149 9.980000e-78 302.0
13 TraesCS2D01G260500 chr2B 85.348 273 31 3 5739 6008 225577031 225577297 2.170000e-69 274.0
14 TraesCS2D01G260500 chr2B 83.000 100 11 4 5558 5655 383562674 383562769 1.090000e-12 86.1
15 TraesCS2D01G260500 chr5D 86.548 617 74 7 1 609 203073373 203072758 0.000000e+00 671.0
16 TraesCS2D01G260500 chr5D 88.298 94 11 0 1001 1094 473363723 473363630 5.020000e-21 113.0
17 TraesCS2D01G260500 chr6A 85.831 614 79 7 1 609 600724833 600725443 0.000000e+00 645.0
18 TraesCS2D01G260500 chr6B 85.124 605 81 7 1 598 691002049 691002651 1.460000e-170 610.0
19 TraesCS2D01G260500 chr6B 84.249 273 34 5 5739 6008 609838783 609839049 2.190000e-64 257.0
20 TraesCS2D01G260500 chr5A 84.441 617 83 12 1 609 63383327 63383938 4.090000e-166 595.0
21 TraesCS2D01G260500 chr5A 89.474 95 10 0 1000 1094 593178892 593178798 3.000000e-23 121.0
22 TraesCS2D01G260500 chr3D 82.836 670 100 9 1 661 423018576 423017913 2.460000e-163 586.0
23 TraesCS2D01G260500 chr3D 88.281 128 13 2 5739 5865 575560492 575560366 1.060000e-32 152.0
24 TraesCS2D01G260500 chr4D 82.764 673 96 17 1 661 353526755 353527419 3.180000e-162 582.0
25 TraesCS2D01G260500 chr4D 81.773 406 48 13 5739 6124 144893227 144893626 3.560000e-82 316.0
26 TraesCS2D01G260500 chr4D 81.081 111 10 4 5556 5655 175111626 175111736 1.830000e-10 78.7
27 TraesCS2D01G260500 chrUn 82.020 406 47 14 5739 6124 53806582 53806183 7.660000e-84 322.0
28 TraesCS2D01G260500 chrUn 82.569 109 8 2 5558 5655 53806797 53806689 1.090000e-12 86.1
29 TraesCS2D01G260500 chr7A 88.618 246 25 3 4006 4249 367258687 367258443 4.640000e-76 296.0
30 TraesCS2D01G260500 chr7A 87.129 202 20 4 4396 4594 367258279 367258081 2.220000e-54 224.0
31 TraesCS2D01G260500 chr7A 80.333 300 37 14 5725 6010 501072719 501073010 2.240000e-49 207.0
32 TraesCS2D01G260500 chr7A 92.857 84 6 0 4902 4985 367258082 367257999 8.340000e-24 122.0
33 TraesCS2D01G260500 chr7B 86.691 278 22 4 4902 5177 285459786 285459522 1.670000e-75 294.0
34 TraesCS2D01G260500 chr7B 87.805 246 27 3 4006 4249 285460391 285460147 1.000000e-72 285.0
35 TraesCS2D01G260500 chr7B 81.949 277 29 6 5748 6010 450585327 450585596 1.340000e-51 215.0
36 TraesCS2D01G260500 chr7D 86.397 272 23 6 4902 5172 303040595 303040853 1.000000e-72 285.0
37 TraesCS2D01G260500 chr7D 84.173 278 33 4 5739 6010 431921444 431921172 6.090000e-65 259.0
38 TraesCS2D01G260500 chr7D 80.403 347 34 26 4247 4588 303040273 303040590 3.690000e-57 233.0
39 TraesCS2D01G260500 chr4B 80.576 278 39 6 5739 6009 594880935 594881204 3.740000e-47 200.0
40 TraesCS2D01G260500 chr4B 80.180 111 10 5 5556 5655 316983760 316983869 8.510000e-09 73.1
41 TraesCS2D01G260500 chr5B 88.889 99 10 1 996 1094 580692691 580692594 3.000000e-23 121.0
42 TraesCS2D01G260500 chr6D 93.617 47 3 0 5557 5603 242987580 242987534 3.060000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G260500 chr2D 316652998 316659121 6123 True 11310.000000 11310 100.000000 1 6124 1 chr2D.!!$R2 6123
1 TraesCS2D01G260500 chr2D 377124414 377125042 628 False 671.000000 671 86.076000 2 627 1 chr2D.!!$F2 625
2 TraesCS2D01G260500 chr2A 418394587 418401451 6864 True 2387.500000 8772 92.422000 1 6124 4 chr2A.!!$R2 6123
3 TraesCS2D01G260500 chr2B 384672967 384678530 5563 False 2983.666667 8150 93.051667 679 6124 3 chr2B.!!$F4 5445
4 TraesCS2D01G260500 chr2B 384653927 384654596 669 False 821.000000 821 88.872000 1 669 1 chr2B.!!$F3 668
5 TraesCS2D01G260500 chr5D 203072758 203073373 615 True 671.000000 671 86.548000 1 609 1 chr5D.!!$R1 608
6 TraesCS2D01G260500 chr6A 600724833 600725443 610 False 645.000000 645 85.831000 1 609 1 chr6A.!!$F1 608
7 TraesCS2D01G260500 chr6B 691002049 691002651 602 False 610.000000 610 85.124000 1 598 1 chr6B.!!$F2 597
8 TraesCS2D01G260500 chr5A 63383327 63383938 611 False 595.000000 595 84.441000 1 609 1 chr5A.!!$F1 608
9 TraesCS2D01G260500 chr3D 423017913 423018576 663 True 586.000000 586 82.836000 1 661 1 chr3D.!!$R1 660
10 TraesCS2D01G260500 chr4D 353526755 353527419 664 False 582.000000 582 82.764000 1 661 1 chr4D.!!$F3 660
11 TraesCS2D01G260500 chrUn 53806183 53806797 614 True 204.050000 322 82.294500 5558 6124 2 chrUn.!!$R1 566
12 TraesCS2D01G260500 chr7A 367257999 367258687 688 True 214.000000 296 89.534667 4006 4985 3 chr7A.!!$R1 979
13 TraesCS2D01G260500 chr7B 285459522 285460391 869 True 289.500000 294 87.248000 4006 5177 2 chr7B.!!$R1 1171
14 TraesCS2D01G260500 chr7D 303040273 303040853 580 False 259.000000 285 83.400000 4247 5172 2 chr7D.!!$F1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 804 0.466189 CCCACCTGTCAGTTGCACTT 60.466 55.000 0.00 0.0 0.00 3.16 F
1580 1607 0.037326 TGTCAGATTCTGTCACCCGC 60.037 55.000 13.23 0.0 32.61 6.13 F
2587 2622 0.179108 GGACCAGTACATCCAGCGAC 60.179 60.000 0.00 0.0 34.87 5.19 F
3271 3306 3.050275 GCAACCGGACCAGTCAGC 61.050 66.667 9.46 0.0 0.00 4.26 F
4634 4743 0.550914 ACAGCAGAAAACCCTGGTCA 59.449 50.000 0.00 0.0 42.33 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1794 3.258123 TGTGACACTAATAGAGCAGCACA 59.742 43.478 7.20 0.00 0.0 4.57 R
3260 3295 0.591659 GGAAAAACGCTGACTGGTCC 59.408 55.000 0.00 0.00 0.0 4.46 R
4407 4513 2.600867 GTCAGACTTTAGCGCTCATGTC 59.399 50.000 23.09 23.09 0.0 3.06 R
4819 4928 1.548719 ACCATAGCTTCACGTGCAGTA 59.451 47.619 16.52 8.21 0.0 2.74 R
5657 5943 1.803453 AAGATTTGGCCCTGCTCCCA 61.803 55.000 0.00 0.00 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 5.001232 GTGTCTTAAAGGACCACTTGCATA 58.999 41.667 0.00 0.00 39.96 3.14
125 130 3.423123 CGAGCCATTGAACGACTTAACAC 60.423 47.826 0.00 0.00 0.00 3.32
325 332 4.373116 GGCCTGTCGGAGCGTTGA 62.373 66.667 0.00 0.00 0.00 3.18
473 491 3.113477 TTTTGGGTGGGCCTGGGA 61.113 61.111 4.53 0.00 34.45 4.37
498 516 1.407721 TTCCTATGTTTCGCGCGTCG 61.408 55.000 30.98 12.53 40.15 5.12
637 658 1.677633 GGACGGATGGGGTGGTTTG 60.678 63.158 0.00 0.00 0.00 2.93
638 659 1.074248 GACGGATGGGGTGGTTTGT 59.926 57.895 0.00 0.00 0.00 2.83
653 676 1.602377 GTTTGTGGTCCGTCTTGAAGG 59.398 52.381 0.00 0.00 0.00 3.46
658 681 1.371558 GTCCGTCTTGAAGGTGCCT 59.628 57.895 2.80 0.00 0.00 4.75
661 684 1.906574 TCCGTCTTGAAGGTGCCTTAT 59.093 47.619 3.11 0.00 36.26 1.73
715 738 0.818040 GATTGGGCCCACGATACACC 60.818 60.000 28.70 0.00 0.00 4.16
756 779 4.697756 CTCCTTTCGCGCACCCCA 62.698 66.667 8.75 0.00 0.00 4.96
780 804 0.466189 CCCACCTGTCAGTTGCACTT 60.466 55.000 0.00 0.00 0.00 3.16
952 977 4.465446 CTCCTCCGAGCCCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
1420 1447 6.350103 TCAGTAGTCACTTACTCGATCTCAT 58.650 40.000 0.00 0.00 39.80 2.90
1580 1607 0.037326 TGTCAGATTCTGTCACCCGC 60.037 55.000 13.23 0.00 32.61 6.13
1826 1853 5.812642 AGCTGGACTGATTATTTCGTGTTAG 59.187 40.000 0.00 0.00 0.00 2.34
1946 1973 6.263168 ACATTTACATTAAGGCCTATGCTGAC 59.737 38.462 5.16 0.00 37.74 3.51
2369 2402 8.897872 AAAATAGTTAGGTGTTTTCTCTTCGA 57.102 30.769 0.00 0.00 0.00 3.71
2527 2562 4.618920 TTTGTTACTTCTGGTCCCTCTC 57.381 45.455 0.00 0.00 0.00 3.20
2587 2622 0.179108 GGACCAGTACATCCAGCGAC 60.179 60.000 0.00 0.00 34.87 5.19
3225 3260 7.331934 CGTGGATGATATTTGTGATAGTAAGGG 59.668 40.741 0.00 0.00 0.00 3.95
3271 3306 3.050275 GCAACCGGACCAGTCAGC 61.050 66.667 9.46 0.00 0.00 4.26
3949 3986 3.209410 ACCTGAGCTTCTTGTTGACTTG 58.791 45.455 0.00 0.00 0.00 3.16
4070 4109 8.907885 AGCTTTCTTTTGTATCTCAGACTTTTT 58.092 29.630 0.00 0.00 0.00 1.94
4080 4119 7.552687 TGTATCTCAGACTTTTTGTTCAACTGT 59.447 33.333 0.00 0.00 0.00 3.55
4338 4444 9.672673 AGTGATTACTCTGTGCAAATAAGTTAT 57.327 29.630 0.00 0.00 28.79 1.89
4407 4513 4.260784 GCTGTGTAGTCCTGTTTGAACTTG 60.261 45.833 0.00 0.00 0.00 3.16
4634 4743 0.550914 ACAGCAGAAAACCCTGGTCA 59.449 50.000 0.00 0.00 42.33 4.02
4686 4795 2.044793 ATCCCCTGAGGTCTGTCAAA 57.955 50.000 0.00 0.00 36.75 2.69
4819 4928 3.262915 GCTATGATCACCAGGATAGGCTT 59.737 47.826 0.00 0.00 36.00 4.35
4847 4956 4.327357 CACGTGAAGCTATGGTAAGTCTTG 59.673 45.833 10.90 0.00 0.00 3.02
5160 5271 1.935873 GCTGATATTGAACGAGCAGCA 59.064 47.619 12.59 0.00 45.78 4.41
5526 5795 1.859302 AATCAACTCGAGAGGCTCCT 58.141 50.000 21.68 0.00 0.00 3.69
5549 5818 4.885325 TGTAAACTGGTCCTTTTCTTCCAC 59.115 41.667 0.00 0.00 0.00 4.02
5626 5911 5.010282 AGTGAGTGTTGAAGGAACAACTTT 58.990 37.500 11.73 1.96 46.30 2.66
5657 5943 7.437748 ACTGTGCTAGATATCGCTTTAGAAAT 58.562 34.615 0.00 0.00 0.00 2.17
5725 6063 9.448587 AATAGATAGTGGGGTATGTAGTCTTTT 57.551 33.333 0.00 0.00 0.00 2.27
5751 6464 3.618351 TGCGGCTAGGGTATATAGTCTC 58.382 50.000 0.00 0.00 0.00 3.36
5756 6469 6.054295 CGGCTAGGGTATATAGTCTCGTTAT 58.946 44.000 0.00 0.00 0.00 1.89
5770 6483 7.934855 AGTCTCGTTATAAACTAGAGGTGAA 57.065 36.000 0.00 0.00 34.37 3.18
5789 6502 5.105473 GGTGAAGACCTTTATTTTTAGGGCC 60.105 44.000 0.00 0.00 40.71 5.80
5906 6896 6.655078 AACAGCAAGTATGGTTGAGAAAAT 57.345 33.333 0.00 0.00 34.35 1.82
5911 6901 9.643693 CAGCAAGTATGGTTGAGAAAATAAAAT 57.356 29.630 0.00 0.00 34.35 1.82
6031 7025 7.452880 TCATTTTTCTCTGGTTGTATGGAAG 57.547 36.000 0.00 0.00 0.00 3.46
6048 7047 4.491676 TGGAAGTCGACCTTATCTTTTCG 58.508 43.478 13.01 0.00 32.03 3.46
6065 7064 6.046593 TCTTTTCGTAGAGTGCTTTTTCTGA 58.953 36.000 0.00 0.00 38.43 3.27
6097 7096 3.380004 AGTCAAGTCCGCAATGTTGAAAA 59.620 39.130 0.00 0.00 30.94 2.29
6104 7103 4.148696 GTCCGCAATGTTGAAAATGTTGAG 59.851 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.319453 AGGAGCATGTTCTCAATTTCAAGA 58.681 37.500 9.57 0.00 34.84 3.02
70 72 0.532573 ACACCGATGAGACAGCGATT 59.467 50.000 10.81 0.00 46.56 3.34
125 130 7.323895 CGATTTGGAGTACATATACGAGAAGTG 59.676 40.741 0.00 0.00 36.33 3.16
315 321 2.372690 CGTCACCTTCAACGCTCCG 61.373 63.158 0.00 0.00 31.48 4.63
325 332 1.251527 ATCTGCGTCTCCGTCACCTT 61.252 55.000 0.00 0.00 36.15 3.50
454 468 2.123077 CCAGGCCCACCCAAAACA 60.123 61.111 0.00 0.00 36.11 2.83
473 491 2.404215 CGCGAAACATAGGAATCCGAT 58.596 47.619 0.00 0.00 0.00 4.18
498 516 2.034221 AAGCTTTGCGGGAGTCCC 59.966 61.111 19.37 19.37 41.09 4.46
563 583 1.195442 TGGGCTGTATTGGTCCACGA 61.195 55.000 0.00 0.00 33.10 4.35
631 652 0.542333 TCAAGACGGACCACAAACCA 59.458 50.000 0.00 0.00 0.00 3.67
632 653 1.602377 CTTCAAGACGGACCACAAACC 59.398 52.381 0.00 0.00 0.00 3.27
634 655 1.210967 ACCTTCAAGACGGACCACAAA 59.789 47.619 0.00 0.00 0.00 2.83
637 658 1.228657 GCACCTTCAAGACGGACCAC 61.229 60.000 0.00 0.00 0.00 4.16
638 659 1.070786 GCACCTTCAAGACGGACCA 59.929 57.895 0.00 0.00 0.00 4.02
715 738 2.520458 TTGGGACCCAACTGGCAG 59.480 61.111 22.74 14.16 38.75 4.85
756 779 0.401738 CAACTGACAGGTGGGTCCAT 59.598 55.000 13.01 0.00 36.97 3.41
780 804 4.124351 CGTGGGAGAAGCGCGGTA 62.124 66.667 12.91 0.00 0.00 4.02
952 977 1.175983 GGGCGACGGATCAGAGAGAT 61.176 60.000 0.00 0.00 40.48 2.75
1420 1447 7.280428 TGAACTACCAAAAGTATCACGAAACAA 59.720 33.333 0.00 0.00 0.00 2.83
1580 1607 5.334414 GGAGAATATTGCTGGTAAATGAGCG 60.334 44.000 0.00 0.00 38.09 5.03
1767 1794 3.258123 TGTGACACTAATAGAGCAGCACA 59.742 43.478 7.20 0.00 0.00 4.57
1880 1907 6.474751 CAGCTGCTTTGAGATTAAAAATAGGC 59.525 38.462 0.00 0.00 0.00 3.93
1885 1912 6.183360 TGGAACAGCTGCTTTGAGATTAAAAA 60.183 34.615 15.27 0.00 0.00 1.94
1946 1973 6.647067 AGAAACAGAACAGGAGTAAATTCTCG 59.353 38.462 0.00 0.00 35.52 4.04
2369 2402 7.405292 TCTTTTCCTGTTTGTATGATGGAGAT 58.595 34.615 0.00 0.00 0.00 2.75
2587 2622 6.712241 AAACATCATAACAGTCAGAACTCG 57.288 37.500 0.00 0.00 31.71 4.18
3260 3295 0.591659 GGAAAAACGCTGACTGGTCC 59.408 55.000 0.00 0.00 0.00 4.46
3261 3296 1.531578 GAGGAAAAACGCTGACTGGTC 59.468 52.381 0.00 0.00 0.00 4.02
3381 3418 2.756760 CAGTAATCCAAAGCCTGCACAT 59.243 45.455 0.00 0.00 0.00 3.21
3704 3741 9.203421 CAAAAGAAATACCCTTTCCACATAAAC 57.797 33.333 0.00 0.00 33.15 2.01
3896 3933 7.086685 AGTACCTAAATCCCAGTGAAAAAGA 57.913 36.000 0.00 0.00 0.00 2.52
3949 3986 5.288952 GTCCAAAGAGTAGTCGTAATCTTGC 59.711 44.000 0.00 0.00 41.60 4.01
4041 4079 8.715191 AGTCTGAGATACAAAAGAAAGCTATG 57.285 34.615 0.00 0.00 0.00 2.23
4070 4109 8.620116 TTCATAAGATCATCAACAGTTGAACA 57.380 30.769 19.92 9.73 43.95 3.18
4160 4199 6.485393 CACCTTTGCAATTTTAACAAGTTGG 58.515 36.000 7.96 0.00 31.74 3.77
4244 4284 5.841957 AGAATATCAGATGCCACCAAAAC 57.158 39.130 0.00 0.00 0.00 2.43
4407 4513 2.600867 GTCAGACTTTAGCGCTCATGTC 59.399 50.000 23.09 23.09 0.00 3.06
4608 4717 1.662044 GTTTTCTGCTGTGCCTGGG 59.338 57.895 0.00 0.00 0.00 4.45
4609 4718 1.662044 GGTTTTCTGCTGTGCCTGG 59.338 57.895 0.00 0.00 0.00 4.45
4634 4743 6.403866 TGGTTGTCTGCATTGATAAACTTT 57.596 33.333 2.89 0.00 0.00 2.66
4819 4928 1.548719 ACCATAGCTTCACGTGCAGTA 59.451 47.619 16.52 8.21 0.00 2.74
4847 4956 2.096819 TGAACAACCAGTCGAAAACAGC 59.903 45.455 0.00 0.00 0.00 4.40
5145 5256 2.736721 GTCAAGTGCTGCTCGTTCAATA 59.263 45.455 0.00 0.00 0.00 1.90
5160 5271 1.741770 GGATGCGGCTTCGTCAAGT 60.742 57.895 9.43 0.00 36.07 3.16
5526 5795 4.885325 GTGGAAGAAAAGGACCAGTTTACA 59.115 41.667 0.00 0.00 32.89 2.41
5549 5818 4.940046 ACCTTGTGCTACTTCATGATCTTG 59.060 41.667 0.00 2.18 0.00 3.02
5626 5911 6.819397 AGCGATATCTAGCACAGTACATTA 57.181 37.500 0.34 0.00 35.48 1.90
5657 5943 1.803453 AAGATTTGGCCCTGCTCCCA 61.803 55.000 0.00 0.00 0.00 4.37
5727 6065 4.836736 AGACTATATACCCTAGCCGCAAAA 59.163 41.667 0.00 0.00 0.00 2.44
5728 6066 4.413760 AGACTATATACCCTAGCCGCAAA 58.586 43.478 0.00 0.00 0.00 3.68
5729 6067 4.015084 GAGACTATATACCCTAGCCGCAA 58.985 47.826 0.00 0.00 0.00 4.85
5731 6069 2.613133 CGAGACTATATACCCTAGCCGC 59.387 54.545 0.00 0.00 0.00 6.53
5732 6070 3.871485 ACGAGACTATATACCCTAGCCG 58.129 50.000 0.00 0.00 0.00 5.52
5770 6483 4.014406 CACGGCCCTAAAAATAAAGGTCT 58.986 43.478 0.00 0.00 0.00 3.85
5789 6502 3.238108 AGTATGTGAAGGCTTCTCACG 57.762 47.619 28.34 0.00 36.17 4.35
6031 7025 5.738225 CACTCTACGAAAAGATAAGGTCGAC 59.262 44.000 7.13 7.13 36.98 4.20
6048 7047 5.948992 ACCATTCAGAAAAAGCACTCTAC 57.051 39.130 0.00 0.00 0.00 2.59
6065 7064 2.166664 GCGGACTTGACTCTCTACCATT 59.833 50.000 0.00 0.00 0.00 3.16
6097 7096 5.957771 AGTGACATGGGTATACTCAACAT 57.042 39.130 10.06 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.