Multiple sequence alignment - TraesCS2D01G259500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G259500 chr2D 100.000 5295 0 0 1 5295 315502329 315497035 0.000000e+00 9779.0
1 TraesCS2D01G259500 chr2D 74.416 1028 214 33 992 1983 411959715 411958701 3.840000e-106 396.0
2 TraesCS2D01G259500 chr2A 94.339 2526 82 21 2785 5295 419462081 419464560 0.000000e+00 3816.0
3 TraesCS2D01G259500 chr2A 95.957 2028 60 8 769 2792 419451639 419453648 0.000000e+00 3271.0
4 TraesCS2D01G259500 chr2A 85.742 519 52 15 3631 4144 699532171 699532672 3.630000e-146 529.0
5 TraesCS2D01G259500 chr2A 88.387 155 17 1 587 740 419450888 419451042 9.060000e-43 185.0
6 TraesCS2D01G259500 chr2A 94.828 58 3 0 2037 2094 419452960 419453017 2.030000e-14 91.6
7 TraesCS2D01G259500 chr2B 93.913 2382 103 18 420 2795 383379359 383377014 0.000000e+00 3557.0
8 TraesCS2D01G259500 chr2B 95.221 1674 59 9 3630 5295 383373905 383372245 0.000000e+00 2628.0
9 TraesCS2D01G259500 chr2B 88.889 576 41 10 2790 3357 383374462 383373902 0.000000e+00 688.0
10 TraesCS2D01G259500 chr2B 73.973 1022 217 36 1019 2005 485315981 485314974 8.380000e-98 368.0
11 TraesCS2D01G259500 chr2B 87.943 282 30 3 3354 3633 133123231 133122952 3.950000e-86 329.0
12 TraesCS2D01G259500 chr2B 94.828 58 3 0 2037 2094 383377705 383377648 2.030000e-14 91.6
13 TraesCS2D01G259500 chr1A 85.185 1053 102 23 3631 4668 53681445 53680432 0.000000e+00 1031.0
14 TraesCS2D01G259500 chr1A 87.671 438 34 10 2445 2879 53681906 53681486 4.760000e-135 492.0
15 TraesCS2D01G259500 chr1A 78.723 423 62 21 2880 3293 38740573 38740170 1.890000e-64 257.0
16 TraesCS2D01G259500 chr1A 74.333 487 100 21 1101 1567 68450559 68451040 3.260000e-42 183.0
17 TraesCS2D01G259500 chr1A 79.668 241 43 6 5055 5293 490507404 490507640 9.120000e-38 169.0
18 TraesCS2D01G259500 chrUn 84.995 1053 105 23 3631 4668 330121659 330120645 0.000000e+00 1020.0
19 TraesCS2D01G259500 chrUn 84.895 1046 107 21 3631 4661 330136654 330137663 0.000000e+00 1009.0
20 TraesCS2D01G259500 chrUn 85.130 1002 109 19 3632 4622 297365900 297366872 0.000000e+00 989.0
21 TraesCS2D01G259500 chrUn 85.130 1002 109 19 3632 4622 331742862 331743834 0.000000e+00 989.0
22 TraesCS2D01G259500 chrUn 86.585 738 71 19 3631 4362 356921426 356920711 0.000000e+00 789.0
23 TraesCS2D01G259500 chrUn 94.643 56 2 1 2880 2935 275338069 275338015 9.450000e-13 86.1
24 TraesCS2D01G259500 chr7B 85.388 1006 107 20 3631 4625 589681276 589680300 0.000000e+00 1007.0
25 TraesCS2D01G259500 chr7B 91.209 273 16 5 2613 2879 589681587 589681317 1.080000e-96 364.0
26 TraesCS2D01G259500 chr7B 87.500 280 31 3 3357 3634 185923422 185923145 2.380000e-83 320.0
27 TraesCS2D01G259500 chr7B 87.143 280 32 3 3357 3634 185860417 185860140 1.110000e-81 315.0
28 TraesCS2D01G259500 chr7B 86.321 212 22 5 3435 3644 333223239 333223445 1.920000e-54 224.0
29 TraesCS2D01G259500 chr4A 84.455 1055 113 25 3631 4668 675154457 675153437 0.000000e+00 992.0
30 TraesCS2D01G259500 chr4A 91.450 269 19 3 2613 2879 700678489 700678755 3.010000e-97 366.0
31 TraesCS2D01G259500 chr4A 90.706 269 21 3 2613 2879 675154764 675154498 6.520000e-94 355.0
32 TraesCS2D01G259500 chr4A 83.274 281 42 5 3354 3631 552692005 552692283 2.450000e-63 254.0
33 TraesCS2D01G259500 chr3A 84.608 1046 109 27 3631 4661 614768670 614769678 0.000000e+00 992.0
34 TraesCS2D01G259500 chr3A 85.742 519 53 14 3631 4144 22246177 22246679 3.630000e-146 529.0
35 TraesCS2D01G259500 chr3A 87.197 289 31 5 3354 3638 312039484 312039198 1.840000e-84 324.0
36 TraesCS2D01G259500 chr3A 88.476 269 27 3 3356 3622 622094464 622094198 6.620000e-84 322.0
37 TraesCS2D01G259500 chr6D 94.033 419 24 1 1 418 470158040 470157622 7.480000e-178 634.0
38 TraesCS2D01G259500 chr6D 92.048 415 33 0 1 415 158557962 158558376 7.640000e-163 584.0
39 TraesCS2D01G259500 chr6D 80.476 420 39 17 2879 3294 16600644 16601024 1.120000e-71 281.0
40 TraesCS2D01G259500 chr6D 84.000 125 16 2 2896 3016 144066050 144066174 3.350000e-22 117.0
41 TraesCS2D01G259500 chr1D 93.301 418 26 1 1 418 57913943 57914358 2.710000e-172 616.0
42 TraesCS2D01G259500 chr1D 74.587 606 121 18 982 1567 69192253 69192845 8.870000e-58 235.0
43 TraesCS2D01G259500 chr3D 92.840 419 29 1 1 419 101152422 101152005 1.630000e-169 606.0
44 TraesCS2D01G259500 chr3D 86.926 283 32 4 3353 3633 460121080 460120801 3.980000e-81 313.0
45 TraesCS2D01G259500 chr3D 78.118 425 72 12 2880 3295 5535163 5534751 3.170000e-62 250.0
46 TraesCS2D01G259500 chr3D 84.091 220 23 9 3431 3640 285910762 285910545 8.990000e-48 202.0
47 TraesCS2D01G259500 chr3D 83.412 211 21 8 3076 3282 401881694 401881894 3.260000e-42 183.0
48 TraesCS2D01G259500 chr3D 86.111 144 18 2 3152 3293 595107756 595107613 2.550000e-33 154.0
49 TraesCS2D01G259500 chr3D 80.124 161 29 3 2884 3041 273479269 273479109 3.350000e-22 117.0
50 TraesCS2D01G259500 chr3D 80.556 144 25 3 2896 3037 481113644 481113786 2.020000e-19 108.0
51 TraesCS2D01G259500 chr7D 92.584 418 31 0 1 418 592091452 592091869 7.590000e-168 601.0
52 TraesCS2D01G259500 chr7D 92.124 419 32 1 1 418 254331776 254331358 1.640000e-164 590.0
53 TraesCS2D01G259500 chr7D 91.943 422 33 1 1 421 324957103 324957524 1.640000e-164 590.0
54 TraesCS2D01G259500 chr7D 84.912 285 36 6 4383 4661 89527300 89527583 1.120000e-71 281.0
55 TraesCS2D01G259500 chr7D 84.211 285 38 5 4383 4661 89489491 89489774 2.430000e-68 270.0
56 TraesCS2D01G259500 chr7D 78.923 427 69 13 2882 3300 351652161 351652574 2.430000e-68 270.0
57 TraesCS2D01G259500 chr7D 83.860 285 39 5 4383 4661 89525190 89525473 1.130000e-66 265.0
58 TraesCS2D01G259500 chr7D 79.668 241 42 7 5055 5293 16201055 16200820 3.280000e-37 167.0
59 TraesCS2D01G259500 chr5D 92.143 420 32 1 1 420 118518264 118518682 4.570000e-165 592.0
60 TraesCS2D01G259500 chr5D 92.000 425 27 4 1 418 414778371 414777947 1.640000e-164 590.0
61 TraesCS2D01G259500 chr5D 82.184 174 27 4 5121 5293 486823801 486823631 4.270000e-31 147.0
62 TraesCS2D01G259500 chr1B 91.822 269 18 3 2613 2879 130544477 130544211 6.480000e-99 372.0
63 TraesCS2D01G259500 chr1B 90.706 269 21 3 2613 2879 211996515 211996781 6.520000e-94 355.0
64 TraesCS2D01G259500 chr1B 83.333 294 38 9 3357 3644 594038322 594038034 1.460000e-65 261.0
65 TraesCS2D01G259500 chr4B 90.842 273 17 5 2613 2879 570136026 570136296 5.040000e-95 359.0
66 TraesCS2D01G259500 chr4B 86.007 293 37 4 3355 3645 37402791 37402501 1.430000e-80 311.0
67 TraesCS2D01G259500 chr4B 89.844 128 12 1 3151 3278 322691202 322691328 4.240000e-36 163.0
68 TraesCS2D01G259500 chr4B 89.844 128 12 1 3151 3278 322769710 322769836 4.240000e-36 163.0
69 TraesCS2D01G259500 chr6B 87.943 282 30 3 3354 3633 499154199 499153920 3.950000e-86 329.0
70 TraesCS2D01G259500 chr6B 86.620 284 37 1 3355 3638 184891591 184891873 3.980000e-81 313.0
71 TraesCS2D01G259500 chr6B 79.953 424 65 12 2881 3294 43087728 43088141 1.440000e-75 294.0
72 TraesCS2D01G259500 chr6B 78.000 400 63 14 2892 3288 156552511 156552134 1.480000e-55 228.0
73 TraesCS2D01G259500 chr6B 80.255 157 25 6 2421 2574 103575031 103575184 4.330000e-21 113.0
74 TraesCS2D01G259500 chr3B 85.121 289 39 3 3357 3643 334524498 334524212 5.190000e-75 292.0
75 TraesCS2D01G259500 chr3B 84.956 226 22 11 3419 3640 331365196 331365413 8.930000e-53 219.0
76 TraesCS2D01G259500 chr6A 84.030 263 36 6 2881 3139 530090708 530090968 1.140000e-61 248.0
77 TraesCS2D01G259500 chr5B 88.034 117 9 4 3530 3644 354940042 354939929 3.330000e-27 134.0
78 TraesCS2D01G259500 chr5A 81.250 144 24 3 2896 3037 520586723 520586865 4.330000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G259500 chr2D 315497035 315502329 5294 True 9779.000000 9779 100.000000 1 5295 1 chr2D.!!$R1 5294
1 TraesCS2D01G259500 chr2D 411958701 411959715 1014 True 396.000000 396 74.416000 992 1983 1 chr2D.!!$R2 991
2 TraesCS2D01G259500 chr2A 419462081 419464560 2479 False 3816.000000 3816 94.339000 2785 5295 1 chr2A.!!$F1 2510
3 TraesCS2D01G259500 chr2A 419450888 419453648 2760 False 1182.533333 3271 93.057333 587 2792 3 chr2A.!!$F3 2205
4 TraesCS2D01G259500 chr2A 699532171 699532672 501 False 529.000000 529 85.742000 3631 4144 1 chr2A.!!$F2 513
5 TraesCS2D01G259500 chr2B 383372245 383379359 7114 True 1741.150000 3557 93.212750 420 5295 4 chr2B.!!$R3 4875
6 TraesCS2D01G259500 chr2B 485314974 485315981 1007 True 368.000000 368 73.973000 1019 2005 1 chr2B.!!$R2 986
7 TraesCS2D01G259500 chr1A 53680432 53681906 1474 True 761.500000 1031 86.428000 2445 4668 2 chr1A.!!$R2 2223
8 TraesCS2D01G259500 chrUn 330120645 330121659 1014 True 1020.000000 1020 84.995000 3631 4668 1 chrUn.!!$R2 1037
9 TraesCS2D01G259500 chrUn 330136654 330137663 1009 False 1009.000000 1009 84.895000 3631 4661 1 chrUn.!!$F2 1030
10 TraesCS2D01G259500 chrUn 297365900 297366872 972 False 989.000000 989 85.130000 3632 4622 1 chrUn.!!$F1 990
11 TraesCS2D01G259500 chrUn 331742862 331743834 972 False 989.000000 989 85.130000 3632 4622 1 chrUn.!!$F3 990
12 TraesCS2D01G259500 chrUn 356920711 356921426 715 True 789.000000 789 86.585000 3631 4362 1 chrUn.!!$R3 731
13 TraesCS2D01G259500 chr7B 589680300 589681587 1287 True 685.500000 1007 88.298500 2613 4625 2 chr7B.!!$R3 2012
14 TraesCS2D01G259500 chr4A 675153437 675154764 1327 True 673.500000 992 87.580500 2613 4668 2 chr4A.!!$R1 2055
15 TraesCS2D01G259500 chr3A 614768670 614769678 1008 False 992.000000 992 84.608000 3631 4661 1 chr3A.!!$F2 1030
16 TraesCS2D01G259500 chr3A 22246177 22246679 502 False 529.000000 529 85.742000 3631 4144 1 chr3A.!!$F1 513
17 TraesCS2D01G259500 chr1D 69192253 69192845 592 False 235.000000 235 74.587000 982 1567 1 chr1D.!!$F2 585
18 TraesCS2D01G259500 chr7D 89525190 89527583 2393 False 273.000000 281 84.386000 4383 4661 2 chr7D.!!$F5 278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.036388 TAGCGCTGGACAGGAAAAGG 60.036 55.0 22.90 0.00 0.00 3.11 F
943 1515 0.178978 GGCTCTTTCCCATCCCCATC 60.179 60.0 0.00 0.00 0.00 3.51 F
945 1517 0.480252 CTCTTTCCCATCCCCATCCC 59.520 60.0 0.00 0.00 0.00 3.85 F
1837 2445 0.684535 TGTCCAACTTGGCGAGATGA 59.315 50.0 13.19 1.61 37.47 2.92 F
3286 6891 0.036010 CACCCGAGAGCCACAAATCT 60.036 55.0 0.00 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2620 2.030893 CGTGACACAAACTTGCCATGAT 60.031 45.455 6.37 0.00 0.00 2.45 R
2888 6485 1.751927 GCACCTGGGAGCTCCAATG 60.752 63.158 33.29 22.16 46.51 2.82 R
2896 6493 2.281761 GTGTGTGGCACCTGGGAG 60.282 66.667 16.26 0.00 42.10 4.30 R
3352 6957 0.460311 CCACTACGACCAGCCTAAGG 59.540 60.000 0.00 0.00 0.00 2.69 R
4859 8512 0.457851 TGGCAACCTTGTTTGGAACG 59.542 50.000 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.755804 ATGAGACATGTCATGTAACTTGTATAG 57.244 33.333 27.02 0.00 45.03 1.31
27 28 8.749354 TGAGACATGTCATGTAACTTGTATAGT 58.251 33.333 27.02 0.21 45.03 2.12
50 51 8.675040 AGTTATATCGTGATTATGATGTGACG 57.325 34.615 2.54 0.00 36.05 4.35
51 52 8.512138 AGTTATATCGTGATTATGATGTGACGA 58.488 33.333 2.54 0.00 36.05 4.20
52 53 8.576281 GTTATATCGTGATTATGATGTGACGAC 58.424 37.037 2.54 0.00 38.52 4.34
53 54 4.364415 TCGTGATTATGATGTGACGACA 57.636 40.909 0.00 0.00 36.22 4.35
54 55 4.932146 TCGTGATTATGATGTGACGACAT 58.068 39.130 0.00 0.00 46.01 3.06
55 56 4.739716 TCGTGATTATGATGTGACGACATG 59.260 41.667 0.00 0.00 43.22 3.21
56 57 4.739716 CGTGATTATGATGTGACGACATGA 59.260 41.667 0.00 0.00 43.22 3.07
57 58 5.403466 CGTGATTATGATGTGACGACATGAT 59.597 40.000 0.00 0.00 43.22 2.45
58 59 6.399354 CGTGATTATGATGTGACGACATGATC 60.399 42.308 0.00 14.51 43.22 2.92
59 60 6.644181 GTGATTATGATGTGACGACATGATCT 59.356 38.462 18.74 0.00 43.22 2.75
60 61 6.643770 TGATTATGATGTGACGACATGATCTG 59.356 38.462 18.74 0.00 43.22 2.90
61 62 3.874392 TGATGTGACGACATGATCTGT 57.126 42.857 0.00 0.00 43.22 3.41
62 63 3.514645 TGATGTGACGACATGATCTGTG 58.485 45.455 0.00 0.61 43.22 3.66
63 64 3.056607 TGATGTGACGACATGATCTGTGT 60.057 43.478 0.00 4.33 43.22 3.72
64 65 3.385193 TGTGACGACATGATCTGTGTT 57.615 42.857 0.00 0.00 38.54 3.32
65 66 3.059166 TGTGACGACATGATCTGTGTTG 58.941 45.455 0.00 14.01 38.54 3.33
66 67 2.413112 GTGACGACATGATCTGTGTTGG 59.587 50.000 17.71 10.75 38.54 3.77
67 68 2.298729 TGACGACATGATCTGTGTTGGA 59.701 45.455 17.71 6.52 38.54 3.53
69 70 3.264947 ACGACATGATCTGTGTTGGATG 58.735 45.455 17.71 4.55 38.54 3.51
70 71 3.055891 ACGACATGATCTGTGTTGGATGA 60.056 43.478 17.71 0.00 38.54 2.92
71 72 4.124970 CGACATGATCTGTGTTGGATGAT 58.875 43.478 0.00 0.00 38.54 2.45
72 73 5.163416 ACGACATGATCTGTGTTGGATGATA 60.163 40.000 17.71 0.00 38.54 2.15
73 74 5.930569 CGACATGATCTGTGTTGGATGATAT 59.069 40.000 0.00 0.00 38.54 1.63
75 76 6.834107 ACATGATCTGTGTTGGATGATATGA 58.166 36.000 0.00 0.00 36.48 2.15
77 78 7.390718 ACATGATCTGTGTTGGATGATATGATG 59.609 37.037 0.00 0.00 36.48 3.07
78 79 7.069877 TGATCTGTGTTGGATGATATGATGA 57.930 36.000 0.00 0.00 0.00 2.92
79 80 7.159372 TGATCTGTGTTGGATGATATGATGAG 58.841 38.462 0.00 0.00 0.00 2.90
81 82 6.519382 TCTGTGTTGGATGATATGATGAGAC 58.481 40.000 0.00 0.00 0.00 3.36
83 84 7.506938 TCTGTGTTGGATGATATGATGAGACTA 59.493 37.037 0.00 0.00 0.00 2.59
84 85 8.198807 TGTGTTGGATGATATGATGAGACTAT 57.801 34.615 0.00 0.00 0.00 2.12
85 86 8.654094 TGTGTTGGATGATATGATGAGACTATT 58.346 33.333 0.00 0.00 0.00 1.73
159 160 9.796180 ATACTGTATAAAACCTGTACAAAACCA 57.204 29.630 0.00 0.00 0.00 3.67
161 162 8.789762 ACTGTATAAAACCTGTACAAAACCATC 58.210 33.333 0.00 0.00 0.00 3.51
162 163 7.808672 TGTATAAAACCTGTACAAAACCATCG 58.191 34.615 0.00 0.00 0.00 3.84
163 164 6.887626 ATAAAACCTGTACAAAACCATCGT 57.112 33.333 0.00 0.00 0.00 3.73
164 165 7.982761 ATAAAACCTGTACAAAACCATCGTA 57.017 32.000 0.00 0.00 0.00 3.43
165 166 6.696441 AAAACCTGTACAAAACCATCGTAA 57.304 33.333 0.00 0.00 0.00 3.18
167 168 6.887626 AACCTGTACAAAACCATCGTAAAT 57.112 33.333 0.00 0.00 0.00 1.40
168 169 7.982761 AACCTGTACAAAACCATCGTAAATA 57.017 32.000 0.00 0.00 0.00 1.40
169 170 7.368480 ACCTGTACAAAACCATCGTAAATAC 57.632 36.000 0.00 0.00 0.00 1.89
210 211 7.747155 TGAGAAAATATAGTAGTAGCGCTCT 57.253 36.000 16.34 14.03 0.00 4.09
211 212 8.167605 TGAGAAAATATAGTAGTAGCGCTCTT 57.832 34.615 16.34 5.90 0.00 2.85
223 224 4.598257 GCTCTTTAGCGCTGGACA 57.402 55.556 22.90 0.00 39.39 4.02
225 226 1.086634 GCTCTTTAGCGCTGGACAGG 61.087 60.000 22.90 6.95 39.39 4.00
227 228 0.973632 TCTTTAGCGCTGGACAGGAA 59.026 50.000 22.90 0.17 0.00 3.36
228 229 1.346395 TCTTTAGCGCTGGACAGGAAA 59.654 47.619 22.90 9.70 0.00 3.13
229 230 2.151202 CTTTAGCGCTGGACAGGAAAA 58.849 47.619 22.90 8.91 0.00 2.29
230 231 1.808411 TTAGCGCTGGACAGGAAAAG 58.192 50.000 22.90 0.00 0.00 2.27
231 232 0.036388 TAGCGCTGGACAGGAAAAGG 60.036 55.000 22.90 0.00 0.00 3.11
234 235 0.036388 CGCTGGACAGGAAAAGGCTA 60.036 55.000 1.01 0.00 0.00 3.93
235 236 1.454201 GCTGGACAGGAAAAGGCTAC 58.546 55.000 1.01 0.00 0.00 3.58
237 238 2.704572 CTGGACAGGAAAAGGCTACTG 58.295 52.381 0.00 0.00 37.01 2.74
238 239 1.271379 TGGACAGGAAAAGGCTACTGC 60.271 52.381 7.93 0.00 34.40 4.40
239 240 1.003696 GGACAGGAAAAGGCTACTGCT 59.996 52.381 7.93 0.00 39.59 4.24
241 242 3.307480 GGACAGGAAAAGGCTACTGCTAA 60.307 47.826 7.93 0.00 39.59 3.09
243 244 4.327680 ACAGGAAAAGGCTACTGCTAAAG 58.672 43.478 7.93 0.00 39.59 1.85
265 266 3.046390 CACTTAGCAGTAGCGCTGATAC 58.954 50.000 22.90 10.91 44.68 2.24
268 269 3.325252 TTAGCAGTAGCGCTGATACGGA 61.325 50.000 22.90 0.00 44.68 4.69
270 271 6.224833 TTAGCAGTAGCGCTGATACGGAAA 62.225 45.833 22.90 6.62 44.68 3.13
271 272 2.493713 AGTAGCGCTGATACGGAAAG 57.506 50.000 22.90 0.00 29.05 2.62
272 273 0.853419 GTAGCGCTGATACGGAAAGC 59.147 55.000 22.90 0.00 0.00 3.51
275 276 4.110493 GCTGATACGGAAAGCGCT 57.890 55.556 2.64 2.64 0.00 5.92
276 277 3.267900 GCTGATACGGAAAGCGCTA 57.732 52.632 12.05 0.00 0.00 4.26
277 278 0.853419 GCTGATACGGAAAGCGCTAC 59.147 55.000 12.05 8.32 0.00 3.58
279 280 2.120232 CTGATACGGAAAGCGCTACTG 58.880 52.381 12.05 15.89 0.00 2.74
280 281 1.202371 TGATACGGAAAGCGCTACTGG 60.202 52.381 12.05 3.28 0.00 4.00
282 283 1.462616 TACGGAAAGCGCTACTGGTA 58.537 50.000 12.05 8.81 0.00 3.25
284 285 1.278238 CGGAAAGCGCTACTGGTAAG 58.722 55.000 12.05 0.00 0.00 2.34
286 287 2.159338 CGGAAAGCGCTACTGGTAAGTA 60.159 50.000 12.05 0.00 37.88 2.24
301 302 8.558973 ACTGGTAAGTAGGTATAATAGTAGCG 57.441 38.462 0.00 0.00 33.79 4.26
302 303 7.120432 ACTGGTAAGTAGGTATAATAGTAGCGC 59.880 40.741 0.00 0.00 33.79 5.92
304 305 4.612932 AGTAGGTATAATAGTAGCGCGC 57.387 45.455 26.66 26.66 0.00 6.86
308 309 3.436704 AGGTATAATAGTAGCGCGCGTTA 59.563 43.478 32.35 27.52 0.00 3.18
309 310 4.083324 AGGTATAATAGTAGCGCGCGTTAA 60.083 41.667 32.35 16.19 0.00 2.01
310 311 4.616802 GGTATAATAGTAGCGCGCGTTAAA 59.383 41.667 32.35 20.62 0.00 1.52
322 323 2.893886 CGTTAAAACGCGCTACTGC 58.106 52.632 5.73 0.00 46.06 4.40
323 324 0.437295 CGTTAAAACGCGCTACTGCT 59.563 50.000 5.73 0.00 46.06 4.24
324 325 1.650153 CGTTAAAACGCGCTACTGCTA 59.350 47.619 5.73 0.00 46.06 3.49
325 326 2.280708 CGTTAAAACGCGCTACTGCTAT 59.719 45.455 5.73 0.00 46.06 2.97
326 327 3.241868 CGTTAAAACGCGCTACTGCTATT 60.242 43.478 5.73 0.00 46.06 1.73
327 328 4.261451 GTTAAAACGCGCTACTGCTATTC 58.739 43.478 5.73 0.00 36.97 1.75
328 329 2.295253 AAACGCGCTACTGCTATTCT 57.705 45.000 5.73 0.00 36.97 2.40
330 331 2.295253 ACGCGCTACTGCTATTCTTT 57.705 45.000 5.73 0.00 36.97 2.52
332 333 3.372954 ACGCGCTACTGCTATTCTTTAG 58.627 45.455 5.73 0.00 36.97 1.85
334 335 3.385577 GCGCTACTGCTATTCTTTAGCT 58.614 45.455 0.00 0.00 40.95 3.32
335 336 3.183373 GCGCTACTGCTATTCTTTAGCTG 59.817 47.826 0.00 9.18 42.67 4.24
337 338 5.520632 CGCTACTGCTATTCTTTAGCTGTA 58.479 41.667 17.66 17.66 46.16 2.74
340 341 4.363999 ACTGCTATTCTTTAGCTGTAGCG 58.636 43.478 13.33 1.24 46.16 4.26
341 342 5.265184 ACTGCTATTCTTTAGCTGTAGCGC 61.265 45.833 13.33 0.00 46.16 5.92
342 343 8.875076 TACTGCTATTCTTTAGCTGTAGCGCC 62.875 46.154 15.83 0.00 46.16 6.53
349 350 3.923614 GCTGTAGCGCCGTATCAG 58.076 61.111 2.29 7.15 0.00 2.90
352 353 1.663445 GCTGTAGCGCCGTATCAGTAG 60.663 57.143 2.29 0.00 0.00 2.57
355 356 0.309922 TAGCGCCGTATCAGTAGTGC 59.690 55.000 2.29 0.00 36.00 4.40
356 357 2.293627 GCGCCGTATCAGTAGTGCG 61.294 63.158 0.00 0.00 44.38 5.34
358 359 1.299926 GCCGTATCAGTAGTGCGGG 60.300 63.158 14.48 4.95 42.34 6.13
359 360 2.012902 GCCGTATCAGTAGTGCGGGT 62.013 60.000 14.48 0.00 42.34 5.28
360 361 1.311859 CCGTATCAGTAGTGCGGGTA 58.688 55.000 7.09 0.00 38.86 3.69
361 362 1.002033 CCGTATCAGTAGTGCGGGTAC 60.002 57.143 7.09 0.00 38.86 3.34
376 377 0.995731 GGTACGCGCGCTACTGATAC 60.996 60.000 32.58 21.65 0.00 2.24
377 378 0.316442 GTACGCGCGCTACTGATACA 60.316 55.000 32.58 0.00 0.00 2.29
378 379 0.316442 TACGCGCGCTACTGATACAC 60.316 55.000 32.58 0.00 0.00 2.90
379 380 2.293627 CGCGCGCTACTGATACACC 61.294 63.158 30.48 0.00 0.00 4.16
380 381 1.226859 GCGCGCTACTGATACACCA 60.227 57.895 26.67 0.00 0.00 4.17
381 382 0.804544 GCGCGCTACTGATACACCAA 60.805 55.000 26.67 0.00 0.00 3.67
382 383 1.635844 CGCGCTACTGATACACCAAA 58.364 50.000 5.56 0.00 0.00 3.28
383 384 2.201732 CGCGCTACTGATACACCAAAT 58.798 47.619 5.56 0.00 0.00 2.32
384 385 3.377439 CGCGCTACTGATACACCAAATA 58.623 45.455 5.56 0.00 0.00 1.40
385 386 3.181774 CGCGCTACTGATACACCAAATAC 59.818 47.826 5.56 0.00 0.00 1.89
386 387 3.493503 GCGCTACTGATACACCAAATACC 59.506 47.826 0.00 0.00 0.00 2.73
387 388 4.056050 CGCTACTGATACACCAAATACCC 58.944 47.826 0.00 0.00 0.00 3.69
389 390 2.914059 ACTGATACACCAAATACCCGC 58.086 47.619 0.00 0.00 0.00 6.13
390 391 1.864711 CTGATACACCAAATACCCGCG 59.135 52.381 0.00 0.00 0.00 6.46
391 392 0.584876 GATACACCAAATACCCGCGC 59.415 55.000 0.00 0.00 0.00 6.86
393 394 0.822811 TACACCAAATACCCGCGCTA 59.177 50.000 5.56 0.00 0.00 4.26
394 395 0.741927 ACACCAAATACCCGCGCTAC 60.742 55.000 5.56 0.00 0.00 3.58
395 396 0.461339 CACCAAATACCCGCGCTACT 60.461 55.000 5.56 0.00 0.00 2.57
396 397 0.461339 ACCAAATACCCGCGCTACTG 60.461 55.000 5.56 0.00 0.00 2.74
397 398 1.641677 CAAATACCCGCGCTACTGC 59.358 57.895 5.56 0.00 0.00 4.40
398 399 0.810031 CAAATACCCGCGCTACTGCT 60.810 55.000 5.56 0.00 36.97 4.24
399 400 0.748450 AAATACCCGCGCTACTGCTA 59.252 50.000 5.56 0.00 36.97 3.49
400 401 0.314302 AATACCCGCGCTACTGCTAG 59.686 55.000 5.56 0.00 36.97 3.42
401 402 1.524863 ATACCCGCGCTACTGCTAGG 61.525 60.000 5.56 0.00 36.97 3.02
402 403 4.951963 CCCGCGCTACTGCTAGGC 62.952 72.222 5.56 0.00 36.97 3.93
405 406 1.519455 CGCGCTACTGCTAGGCTTT 60.519 57.895 5.56 0.00 36.97 3.51
406 407 1.084370 CGCGCTACTGCTAGGCTTTT 61.084 55.000 5.56 0.00 36.97 2.27
407 408 0.653114 GCGCTACTGCTAGGCTTTTC 59.347 55.000 0.00 0.00 36.97 2.29
408 409 1.291132 CGCTACTGCTAGGCTTTTCC 58.709 55.000 0.00 0.00 36.97 3.13
409 410 1.669604 GCTACTGCTAGGCTTTTCCC 58.330 55.000 0.00 0.00 36.03 3.97
410 411 1.210722 GCTACTGCTAGGCTTTTCCCT 59.789 52.381 0.00 0.00 39.05 4.20
411 412 2.434702 GCTACTGCTAGGCTTTTCCCTA 59.565 50.000 0.00 0.00 36.41 3.53
429 430 3.006967 CCCTAGTAGTGTTGTGCTGAAGT 59.993 47.826 0.00 0.00 0.00 3.01
484 486 6.712547 GGATGGAAGAACAAAGAGAGAAGAAA 59.287 38.462 0.00 0.00 0.00 2.52
485 487 7.229506 GGATGGAAGAACAAAGAGAGAAGAAAA 59.770 37.037 0.00 0.00 0.00 2.29
489 491 8.244113 GGAAGAACAAAGAGAGAAGAAAACAAA 58.756 33.333 0.00 0.00 0.00 2.83
519 521 2.949106 CCATCGAATGGCCATCGC 59.051 61.111 21.08 13.50 44.70 4.58
552 554 3.778955 GGCTAGCTAGGCGGATGA 58.221 61.111 29.08 0.00 39.15 2.92
553 555 2.281830 GGCTAGCTAGGCGGATGAT 58.718 57.895 29.08 0.00 39.15 2.45
555 557 1.002544 GGCTAGCTAGGCGGATGATTT 59.997 52.381 29.08 0.00 39.15 2.17
556 558 2.342179 GCTAGCTAGGCGGATGATTTC 58.658 52.381 22.10 0.00 0.00 2.17
557 559 2.028567 GCTAGCTAGGCGGATGATTTCT 60.029 50.000 22.10 0.00 0.00 2.52
558 560 3.556004 GCTAGCTAGGCGGATGATTTCTT 60.556 47.826 22.10 0.00 0.00 2.52
562 564 4.345257 AGCTAGGCGGATGATTTCTTAGAA 59.655 41.667 0.00 0.00 0.00 2.10
579 581 7.798596 TCTTAGAAAAATCATCCTGCTGATC 57.201 36.000 0.00 0.00 34.79 2.92
594 596 3.077359 GCTGATCCATAGCCGCTAAATT 58.923 45.455 3.73 0.00 35.15 1.82
596 598 4.573900 CTGATCCATAGCCGCTAAATTCT 58.426 43.478 3.73 0.00 0.00 2.40
626 628 6.697892 GCTTCGATAGCCCAGTATATACAATC 59.302 42.308 15.18 6.88 44.48 2.67
635 637 8.554870 AGCCCAGTATATACAATCATGATCATT 58.445 33.333 15.18 0.00 0.00 2.57
636 638 9.182214 GCCCAGTATATACAATCATGATCATTT 57.818 33.333 15.18 0.00 0.00 2.32
673 675 4.044426 CGCAGAGAACATGATGATAACGA 58.956 43.478 0.00 0.00 0.00 3.85
817 1389 4.644234 TGAAATTGTTCCAACTGAGCTTCA 59.356 37.500 0.00 0.00 32.28 3.02
941 1513 2.679342 CGGCTCTTTCCCATCCCCA 61.679 63.158 0.00 0.00 0.00 4.96
942 1514 1.933629 GGCTCTTTCCCATCCCCAT 59.066 57.895 0.00 0.00 0.00 4.00
943 1515 0.178978 GGCTCTTTCCCATCCCCATC 60.179 60.000 0.00 0.00 0.00 3.51
944 1516 0.178978 GCTCTTTCCCATCCCCATCC 60.179 60.000 0.00 0.00 0.00 3.51
945 1517 0.480252 CTCTTTCCCATCCCCATCCC 59.520 60.000 0.00 0.00 0.00 3.85
963 1535 1.584724 CCCATCCCCAACTAGTGAGT 58.415 55.000 0.00 0.00 37.59 3.41
1530 2122 1.808133 CGCCTGAATAGCTTCCAGGTC 60.808 57.143 21.91 15.76 34.64 3.85
1837 2445 0.684535 TGTCCAACTTGGCGAGATGA 59.315 50.000 13.19 1.61 37.47 2.92
1927 2541 1.552799 TTGCCTGAGGATCTTGCGGA 61.553 55.000 0.65 0.00 35.55 5.54
1977 2591 5.515710 CCTCCTACTGCTCTATCATCTGGTA 60.516 48.000 0.00 0.00 0.00 3.25
2026 2640 3.004629 TCATCATGGCAAGTTTGTGTCAC 59.995 43.478 0.00 0.00 35.57 3.67
2029 2643 1.029408 TGGCAAGTTTGTGTCACGCT 61.029 50.000 0.00 0.00 0.00 5.07
2030 2644 0.941542 GGCAAGTTTGTGTCACGCTA 59.058 50.000 0.00 0.00 0.00 4.26
2049 2663 9.639601 TCACGCTAATAAGTCAATAGATAATGG 57.360 33.333 0.00 0.00 0.00 3.16
2109 2723 7.715266 TGGGACAATGTGATCAATTGATAAA 57.285 32.000 20.75 9.79 31.49 1.40
2110 2724 8.308851 TGGGACAATGTGATCAATTGATAAAT 57.691 30.769 20.75 11.60 31.49 1.40
2111 2725 8.760735 TGGGACAATGTGATCAATTGATAAATT 58.239 29.630 20.75 16.19 31.49 1.82
2705 3327 5.574815 AAAACAATACGCATTTGCACTTC 57.425 34.783 3.13 0.00 42.21 3.01
2888 6485 5.940192 TGTGACGATATATTGGGAAATGC 57.060 39.130 4.95 0.00 0.00 3.56
2889 6486 5.372373 TGTGACGATATATTGGGAAATGCA 58.628 37.500 4.95 0.00 0.00 3.96
2890 6487 6.003326 TGTGACGATATATTGGGAAATGCAT 58.997 36.000 4.95 0.00 0.00 3.96
2891 6488 6.489700 TGTGACGATATATTGGGAAATGCATT 59.510 34.615 5.99 5.99 0.00 3.56
2892 6489 6.803320 GTGACGATATATTGGGAAATGCATTG 59.197 38.462 13.82 0.00 0.00 2.82
2893 6490 6.072008 TGACGATATATTGGGAAATGCATTGG 60.072 38.462 13.82 0.00 0.00 3.16
2894 6491 6.009589 ACGATATATTGGGAAATGCATTGGA 58.990 36.000 13.82 0.00 0.00 3.53
2895 6492 6.151648 ACGATATATTGGGAAATGCATTGGAG 59.848 38.462 13.82 0.00 0.00 3.86
2896 6493 2.994186 ATTGGGAAATGCATTGGAGC 57.006 45.000 13.82 3.13 0.00 4.70
2910 6507 3.640407 GAGCTCCCAGGTGCCACA 61.640 66.667 0.87 0.00 35.48 4.17
2912 6509 4.269523 GCTCCCAGGTGCCACACA 62.270 66.667 0.00 0.00 35.86 3.72
3005 6608 2.434331 CCCATTGTCCACCCGTGT 59.566 61.111 0.00 0.00 0.00 4.49
3009 6612 1.313772 CATTGTCCACCCGTGTTCAA 58.686 50.000 0.00 0.19 0.00 2.69
3024 6627 4.148000 CGTGTTCAATTTCGTTTGGAATGG 59.852 41.667 0.00 0.00 33.85 3.16
3055 6658 2.930826 ATCCGTGGCGAAGGAAATAT 57.069 45.000 7.56 0.00 40.32 1.28
3063 6666 2.550208 GGCGAAGGAAATATGGTCCGAT 60.550 50.000 0.00 0.00 40.36 4.18
3081 6684 4.283467 TCCGATAGACGATCCATCCAAATT 59.717 41.667 0.00 0.00 45.77 1.82
3161 6765 3.680786 GCCTTGCCCCACGAAACC 61.681 66.667 0.00 0.00 0.00 3.27
3181 6785 2.159071 CCGAACACGGGTATACAATGGA 60.159 50.000 5.01 0.00 42.66 3.41
3201 6805 2.241176 GACACCCAGGTTTGATATCCCA 59.759 50.000 0.00 0.00 0.00 4.37
3207 6811 5.790096 ACCCAGGTTTGATATCCCAAAATTT 59.210 36.000 0.00 0.00 37.72 1.82
3212 6816 8.313292 CAGGTTTGATATCCCAAAATTTCAGAA 58.687 33.333 0.00 0.00 37.72 3.02
3264 6869 8.863872 AATGCTATATTCAAATAGGGGTGTAC 57.136 34.615 0.00 0.00 31.28 2.90
3286 6891 0.036010 CACCCGAGAGCCACAAATCT 60.036 55.000 0.00 0.00 0.00 2.40
3296 6901 2.083774 GCCACAAATCTTCATCCACGA 58.916 47.619 0.00 0.00 0.00 4.35
3319 6924 1.473258 ATTGCGCTTTATTGCCTGGA 58.527 45.000 9.73 0.00 0.00 3.86
3351 6956 3.181521 CGCACGCTCAATCTTGATAACAA 60.182 43.478 0.00 0.00 36.46 2.83
3352 6957 4.091424 GCACGCTCAATCTTGATAACAAC 58.909 43.478 0.00 0.00 36.46 3.32
3385 6990 2.945008 CGTAGTGGGGAGTATCGTACAA 59.055 50.000 0.00 0.00 34.37 2.41
3426 7031 7.228108 TGAAACTAGTGTATGATACTACCTCCG 59.772 40.741 4.03 0.00 0.00 4.63
3440 7045 5.548706 CTACCTCCGTAGTGCATAGTATC 57.451 47.826 0.00 0.00 37.74 2.24
3441 7046 3.828921 ACCTCCGTAGTGCATAGTATCA 58.171 45.455 0.00 0.00 0.00 2.15
3442 7047 4.408276 ACCTCCGTAGTGCATAGTATCAT 58.592 43.478 0.00 0.00 0.00 2.45
3443 7048 5.567430 ACCTCCGTAGTGCATAGTATCATA 58.433 41.667 0.00 0.00 0.00 2.15
3444 7049 5.648526 ACCTCCGTAGTGCATAGTATCATAG 59.351 44.000 0.00 0.00 0.00 2.23
3445 7050 5.880887 CCTCCGTAGTGCATAGTATCATAGA 59.119 44.000 0.00 0.00 0.00 1.98
3446 7051 6.183360 CCTCCGTAGTGCATAGTATCATAGAC 60.183 46.154 0.00 0.00 0.00 2.59
3624 7229 8.880244 TGCTAACTATGATACTCCCATTACAAT 58.120 33.333 0.00 0.00 0.00 2.71
3846 7466 2.290896 TGGCTTCACTATTTCCTGGTGG 60.291 50.000 0.00 0.00 36.99 4.61
3956 7577 7.437267 ACATATCGGTTAATCTTACGAAGTTGG 59.563 37.037 0.00 0.00 37.78 3.77
3975 7596 1.834263 GGTATGCTCCTCACTTCAGGT 59.166 52.381 0.00 0.00 34.76 4.00
4003 7624 0.309922 CATGCCCATCGAGTTGCATC 59.690 55.000 13.47 0.00 42.22 3.91
4017 7638 2.203470 TGCATCTGTGATCAGCCAAA 57.797 45.000 0.00 0.00 41.10 3.28
4367 8004 0.107312 GCATGCTCAGGAGTGGTGAT 60.107 55.000 11.37 0.00 0.00 3.06
4694 8346 8.379457 ACTGAAATTAAGTAACTTGGTCTCAC 57.621 34.615 0.00 0.00 0.00 3.51
4752 8404 6.015918 TGGTCTTTCATGTTGGGTGAATTAT 58.984 36.000 0.00 0.00 35.68 1.28
4907 8560 5.088026 GGACTCCTAGCCTGAGGTAATAAT 58.912 45.833 0.00 0.00 37.88 1.28
5044 8697 1.170919 TGGGCGTCGACTCTATAGGC 61.171 60.000 14.70 8.87 0.00 3.93
5061 8714 2.935955 CACCGTGGTTTCGCACTC 59.064 61.111 0.00 0.00 0.00 3.51
5205 8860 1.133668 ACTGGCAAGGAAGCAAGAAGT 60.134 47.619 0.00 0.00 37.80 3.01
5214 8869 6.479990 GCAAGGAAGCAAGAAGTATTGTTTTT 59.520 34.615 0.00 0.00 34.29 1.94
5279 8934 5.220586 GCAAGTTTGCGCATTCTATGTAGTA 60.221 40.000 12.75 0.00 45.11 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.749354 ACTATACAAGTTACATGACATGTCTCA 58.251 33.333 24.04 8.56 43.67 3.27
2 3 9.587772 AACTATACAAGTTACATGACATGTCTC 57.412 33.333 24.04 17.10 46.85 3.36
25 26 8.512138 TCGTCACATCATAATCACGATATAACT 58.488 33.333 0.00 0.00 31.65 2.24
26 27 8.576281 GTCGTCACATCATAATCACGATATAAC 58.424 37.037 0.00 0.00 38.43 1.89
27 28 8.293867 TGTCGTCACATCATAATCACGATATAA 58.706 33.333 0.00 0.00 38.43 0.98
29 30 6.677913 TGTCGTCACATCATAATCACGATAT 58.322 36.000 0.00 0.00 38.43 1.63
31 32 4.932146 TGTCGTCACATCATAATCACGAT 58.068 39.130 0.00 0.00 38.43 3.73
33 34 4.739716 TCATGTCGTCACATCATAATCACG 59.260 41.667 0.00 0.00 41.69 4.35
35 36 6.643770 CAGATCATGTCGTCACATCATAATCA 59.356 38.462 0.00 0.00 41.69 2.57
36 37 6.644181 ACAGATCATGTCGTCACATCATAATC 59.356 38.462 0.00 0.00 41.69 1.75
37 38 6.423001 CACAGATCATGTCGTCACATCATAAT 59.577 38.462 0.00 0.00 41.69 1.28
38 39 5.750067 CACAGATCATGTCGTCACATCATAA 59.250 40.000 0.00 0.00 41.69 1.90
40 41 4.117685 CACAGATCATGTCGTCACATCAT 58.882 43.478 0.00 0.00 41.69 2.45
41 42 3.056607 ACACAGATCATGTCGTCACATCA 60.057 43.478 0.00 0.00 41.69 3.07
43 44 3.599730 ACACAGATCATGTCGTCACAT 57.400 42.857 0.00 0.00 44.72 3.21
45 46 2.413112 CCAACACAGATCATGTCGTCAC 59.587 50.000 3.35 0.00 41.41 3.67
46 47 2.298729 TCCAACACAGATCATGTCGTCA 59.701 45.455 3.35 0.00 41.41 4.35
47 48 2.959516 TCCAACACAGATCATGTCGTC 58.040 47.619 3.35 0.00 41.41 4.20
48 49 3.055891 TCATCCAACACAGATCATGTCGT 60.056 43.478 3.35 0.78 41.41 4.34
49 50 3.524541 TCATCCAACACAGATCATGTCG 58.475 45.455 3.35 0.00 41.41 4.35
50 51 6.932960 TCATATCATCCAACACAGATCATGTC 59.067 38.462 3.35 0.00 41.41 3.06
51 52 6.834107 TCATATCATCCAACACAGATCATGT 58.166 36.000 0.00 0.00 45.43 3.21
52 53 7.606456 TCATCATATCATCCAACACAGATCATG 59.394 37.037 0.00 0.00 0.00 3.07
53 54 7.686434 TCATCATATCATCCAACACAGATCAT 58.314 34.615 0.00 0.00 0.00 2.45
54 55 7.015877 TCTCATCATATCATCCAACACAGATCA 59.984 37.037 0.00 0.00 0.00 2.92
55 56 7.331440 GTCTCATCATATCATCCAACACAGATC 59.669 40.741 0.00 0.00 0.00 2.75
56 57 7.016366 AGTCTCATCATATCATCCAACACAGAT 59.984 37.037 0.00 0.00 0.00 2.90
57 58 6.325804 AGTCTCATCATATCATCCAACACAGA 59.674 38.462 0.00 0.00 0.00 3.41
58 59 6.522946 AGTCTCATCATATCATCCAACACAG 58.477 40.000 0.00 0.00 0.00 3.66
59 60 6.490241 AGTCTCATCATATCATCCAACACA 57.510 37.500 0.00 0.00 0.00 3.72
90 91 9.403583 ACATGCAATATGCTCATCATATCATAA 57.596 29.630 3.78 0.00 45.20 1.90
93 94 7.696992 AACATGCAATATGCTCATCATATCA 57.303 32.000 3.78 0.00 45.20 2.15
98 99 7.513371 TCATAAACATGCAATATGCTCATCA 57.487 32.000 3.78 0.00 45.31 3.07
101 102 9.233649 TCATATCATAAACATGCAATATGCTCA 57.766 29.630 3.78 0.00 45.31 4.26
133 134 9.796180 TGGTTTTGTACAGGTTTTATACAGTAT 57.204 29.630 0.00 0.00 30.82 2.12
134 135 9.796180 ATGGTTTTGTACAGGTTTTATACAGTA 57.204 29.630 0.00 0.00 30.82 2.74
136 137 7.960738 CGATGGTTTTGTACAGGTTTTATACAG 59.039 37.037 0.00 0.00 30.82 2.74
138 139 7.809665 ACGATGGTTTTGTACAGGTTTTATAC 58.190 34.615 0.00 0.00 0.00 1.47
139 140 7.982761 ACGATGGTTTTGTACAGGTTTTATA 57.017 32.000 0.00 0.00 0.00 0.98
140 141 6.887626 ACGATGGTTTTGTACAGGTTTTAT 57.112 33.333 0.00 0.00 0.00 1.40
143 144 6.696441 TTTACGATGGTTTTGTACAGGTTT 57.304 33.333 0.00 0.00 0.00 3.27
144 145 6.887626 ATTTACGATGGTTTTGTACAGGTT 57.112 33.333 0.00 0.00 0.00 3.50
145 146 7.368480 GTATTTACGATGGTTTTGTACAGGT 57.632 36.000 0.00 0.00 0.00 4.00
184 185 9.451002 AGAGCGCTACTACTATATTTTCTCATA 57.549 33.333 11.50 0.00 0.00 2.15
185 186 8.343168 AGAGCGCTACTACTATATTTTCTCAT 57.657 34.615 11.50 0.00 0.00 2.90
186 187 7.747155 AGAGCGCTACTACTATATTTTCTCA 57.253 36.000 11.50 0.00 0.00 3.27
189 190 8.852380 GCTAAAGAGCGCTACTACTATATTTTC 58.148 37.037 11.50 0.00 39.39 2.29
190 191 8.745464 GCTAAAGAGCGCTACTACTATATTTT 57.255 34.615 11.50 0.00 39.39 1.82
206 207 1.086634 CCTGTCCAGCGCTAAAGAGC 61.087 60.000 10.99 0.00 46.00 4.09
207 208 0.532573 TCCTGTCCAGCGCTAAAGAG 59.467 55.000 10.99 9.07 0.00 2.85
208 209 0.973632 TTCCTGTCCAGCGCTAAAGA 59.026 50.000 10.99 4.44 0.00 2.52
209 210 1.808411 TTTCCTGTCCAGCGCTAAAG 58.192 50.000 10.99 0.00 0.00 1.85
210 211 2.151202 CTTTTCCTGTCCAGCGCTAAA 58.849 47.619 10.99 1.61 0.00 1.85
211 212 1.610624 CCTTTTCCTGTCCAGCGCTAA 60.611 52.381 10.99 0.00 0.00 3.09
214 215 2.982744 GCCTTTTCCTGTCCAGCGC 61.983 63.158 0.00 0.00 0.00 5.92
216 217 1.003696 AGTAGCCTTTTCCTGTCCAGC 59.996 52.381 0.00 0.00 0.00 4.85
218 219 1.271379 GCAGTAGCCTTTTCCTGTCCA 60.271 52.381 0.00 0.00 33.58 4.02
220 221 2.481289 AGCAGTAGCCTTTTCCTGTC 57.519 50.000 0.00 0.00 43.56 3.51
221 222 4.327680 CTTTAGCAGTAGCCTTTTCCTGT 58.672 43.478 0.00 0.00 43.56 4.00
222 223 3.127721 GCTTTAGCAGTAGCCTTTTCCTG 59.872 47.826 0.00 0.00 43.56 3.86
223 224 3.348119 GCTTTAGCAGTAGCCTTTTCCT 58.652 45.455 0.00 0.00 43.56 3.36
238 239 2.282820 GCGCTACTGCTAAGTGCTTTAG 59.717 50.000 0.00 4.73 45.01 1.85
239 240 2.268298 GCGCTACTGCTAAGTGCTTTA 58.732 47.619 0.00 0.00 45.01 1.85
241 242 2.755929 GCGCTACTGCTAAGTGCTT 58.244 52.632 0.00 0.00 45.01 3.91
243 244 0.458543 TCAGCGCTACTGCTAAGTGC 60.459 55.000 10.99 9.97 45.23 4.40
245 246 2.287069 CGTATCAGCGCTACTGCTAAGT 60.287 50.000 10.99 0.00 45.23 2.24
246 247 2.311462 CGTATCAGCGCTACTGCTAAG 58.689 52.381 10.99 0.00 45.23 2.18
250 251 0.248907 TTCCGTATCAGCGCTACTGC 60.249 55.000 10.99 2.62 46.76 4.40
252 253 1.536284 GCTTTCCGTATCAGCGCTACT 60.536 52.381 10.99 2.19 0.00 2.57
253 254 0.853419 GCTTTCCGTATCAGCGCTAC 59.147 55.000 10.99 3.64 0.00 3.58
254 255 3.267900 GCTTTCCGTATCAGCGCTA 57.732 52.632 10.99 0.00 0.00 4.26
258 259 0.853419 GTAGCGCTTTCCGTATCAGC 59.147 55.000 18.68 0.00 39.71 4.26
259 260 2.120232 CAGTAGCGCTTTCCGTATCAG 58.880 52.381 18.68 0.00 39.71 2.90
262 263 0.822164 ACCAGTAGCGCTTTCCGTAT 59.178 50.000 18.68 0.00 39.71 3.06
263 264 1.462616 TACCAGTAGCGCTTTCCGTA 58.537 50.000 18.68 9.14 39.71 4.02
265 266 1.278238 CTTACCAGTAGCGCTTTCCG 58.722 55.000 18.68 3.68 40.75 4.30
275 276 9.658799 CGCTACTATTATACCTACTTACCAGTA 57.341 37.037 0.00 0.00 34.06 2.74
276 277 7.120432 GCGCTACTATTATACCTACTTACCAGT 59.880 40.741 0.00 0.00 36.99 4.00
277 278 7.470900 GCGCTACTATTATACCTACTTACCAG 58.529 42.308 0.00 0.00 0.00 4.00
279 280 6.481984 CGCGCTACTATTATACCTACTTACC 58.518 44.000 5.56 0.00 0.00 2.85
280 281 5.962423 GCGCGCTACTATTATACCTACTTAC 59.038 44.000 26.67 0.00 0.00 2.34
282 283 4.436584 CGCGCGCTACTATTATACCTACTT 60.437 45.833 30.48 0.00 0.00 2.24
284 285 3.181516 ACGCGCGCTACTATTATACCTAC 60.182 47.826 32.58 0.00 0.00 3.18
286 287 1.808945 ACGCGCGCTACTATTATACCT 59.191 47.619 32.58 0.82 0.00 3.08
288 289 5.729665 TTTAACGCGCGCTACTATTATAC 57.270 39.130 32.58 0.00 0.00 1.47
289 290 5.164292 CGTTTTAACGCGCGCTACTATTATA 60.164 40.000 32.58 11.89 46.06 0.98
290 291 4.374309 CGTTTTAACGCGCGCTACTATTAT 60.374 41.667 32.58 3.21 46.06 1.28
291 292 3.061928 CGTTTTAACGCGCGCTACTATTA 60.062 43.478 32.58 16.97 46.06 0.98
292 293 2.284627 CGTTTTAACGCGCGCTACTATT 60.285 45.455 32.58 18.12 46.06 1.73
293 294 1.253545 CGTTTTAACGCGCGCTACTAT 59.746 47.619 32.58 6.00 46.06 2.12
294 295 0.634731 CGTTTTAACGCGCGCTACTA 59.365 50.000 32.58 13.58 46.06 1.82
295 296 1.413368 CGTTTTAACGCGCGCTACT 59.587 52.632 32.58 14.71 46.06 2.57
296 297 3.924173 CGTTTTAACGCGCGCTAC 58.076 55.556 32.58 18.66 46.06 3.58
313 314 7.755687 CTACAGCTAAAGAATAGCAGTAGCGC 61.756 46.154 19.93 0.00 46.14 5.92
314 315 5.627367 CTACAGCTAAAGAATAGCAGTAGCG 59.373 44.000 19.93 6.19 46.14 4.26
317 318 5.520632 CGCTACAGCTAAAGAATAGCAGTA 58.479 41.667 9.85 10.40 42.68 2.74
318 319 4.363999 CGCTACAGCTAAAGAATAGCAGT 58.636 43.478 9.85 9.85 42.68 4.40
319 320 3.183373 GCGCTACAGCTAAAGAATAGCAG 59.817 47.826 0.00 4.53 42.68 4.24
322 323 2.726760 CGGCGCTACAGCTAAAGAATAG 59.273 50.000 7.64 0.00 39.32 1.73
323 324 2.100252 ACGGCGCTACAGCTAAAGAATA 59.900 45.455 6.90 0.00 39.32 1.75
324 325 1.134788 ACGGCGCTACAGCTAAAGAAT 60.135 47.619 6.90 0.00 39.32 2.40
325 326 0.245539 ACGGCGCTACAGCTAAAGAA 59.754 50.000 6.90 0.00 39.32 2.52
326 327 1.097232 TACGGCGCTACAGCTAAAGA 58.903 50.000 6.90 0.00 39.32 2.52
327 328 2.052157 GATACGGCGCTACAGCTAAAG 58.948 52.381 6.90 0.00 39.32 1.85
328 329 1.406180 TGATACGGCGCTACAGCTAAA 59.594 47.619 6.90 0.00 39.32 1.85
330 331 0.591659 CTGATACGGCGCTACAGCTA 59.408 55.000 6.90 0.00 39.32 3.32
332 333 0.309922 TACTGATACGGCGCTACAGC 59.690 55.000 21.13 4.20 37.78 4.40
334 335 1.332686 CACTACTGATACGGCGCTACA 59.667 52.381 6.90 3.36 0.00 2.74
335 336 1.925068 GCACTACTGATACGGCGCTAC 60.925 57.143 6.90 0.00 0.00 3.58
337 338 1.065928 GCACTACTGATACGGCGCT 59.934 57.895 6.90 0.00 0.00 5.92
339 340 1.657487 CCGCACTACTGATACGGCG 60.657 63.158 4.80 4.80 43.68 6.46
340 341 1.299926 CCCGCACTACTGATACGGC 60.300 63.158 0.00 0.00 42.49 5.68
341 342 1.002033 GTACCCGCACTACTGATACGG 60.002 57.143 0.00 0.00 43.44 4.02
342 343 1.333524 CGTACCCGCACTACTGATACG 60.334 57.143 0.00 0.00 0.00 3.06
343 344 2.396160 CGTACCCGCACTACTGATAC 57.604 55.000 0.00 0.00 0.00 2.24
356 357 2.121564 TATCAGTAGCGCGCGTACCC 62.122 60.000 32.35 14.78 0.00 3.69
358 359 0.316442 TGTATCAGTAGCGCGCGTAC 60.316 55.000 32.35 27.86 0.00 3.67
359 360 0.316442 GTGTATCAGTAGCGCGCGTA 60.316 55.000 32.35 18.91 0.00 4.42
360 361 1.585521 GTGTATCAGTAGCGCGCGT 60.586 57.895 32.35 20.00 0.00 6.01
361 362 2.293627 GGTGTATCAGTAGCGCGCG 61.294 63.158 28.44 28.44 0.00 6.86
363 364 1.635844 TTTGGTGTATCAGTAGCGCG 58.364 50.000 0.00 0.00 0.00 6.86
364 365 3.493503 GGTATTTGGTGTATCAGTAGCGC 59.506 47.826 0.00 0.00 0.00 5.92
366 367 4.056050 CGGGTATTTGGTGTATCAGTAGC 58.944 47.826 0.00 0.00 0.00 3.58
367 368 4.056050 GCGGGTATTTGGTGTATCAGTAG 58.944 47.826 0.00 0.00 0.00 2.57
368 369 3.491276 CGCGGGTATTTGGTGTATCAGTA 60.491 47.826 0.00 0.00 0.00 2.74
370 371 1.864711 CGCGGGTATTTGGTGTATCAG 59.135 52.381 0.00 0.00 0.00 2.90
371 372 1.942677 CGCGGGTATTTGGTGTATCA 58.057 50.000 0.00 0.00 0.00 2.15
372 373 0.584876 GCGCGGGTATTTGGTGTATC 59.415 55.000 8.83 0.00 0.00 2.24
376 377 0.461339 AGTAGCGCGGGTATTTGGTG 60.461 55.000 8.83 0.00 0.00 4.17
377 378 0.461339 CAGTAGCGCGGGTATTTGGT 60.461 55.000 8.83 0.00 0.00 3.67
378 379 1.772063 GCAGTAGCGCGGGTATTTGG 61.772 60.000 8.83 0.00 0.00 3.28
379 380 1.641677 GCAGTAGCGCGGGTATTTG 59.358 57.895 8.83 3.57 0.00 2.32
380 381 4.120085 GCAGTAGCGCGGGTATTT 57.880 55.556 8.83 0.00 0.00 1.40
389 390 2.074826 GGGAAAAGCCTAGCAGTAGCG 61.075 57.143 0.00 0.00 40.82 4.26
390 391 1.210722 AGGGAAAAGCCTAGCAGTAGC 59.789 52.381 0.00 0.00 37.73 3.58
391 392 3.707102 ACTAGGGAAAAGCCTAGCAGTAG 59.293 47.826 0.00 0.00 39.48 2.57
393 394 2.552367 ACTAGGGAAAAGCCTAGCAGT 58.448 47.619 0.00 0.00 39.48 4.40
394 395 3.707102 ACTACTAGGGAAAAGCCTAGCAG 59.293 47.826 0.00 0.00 39.48 4.24
395 396 3.451178 CACTACTAGGGAAAAGCCTAGCA 59.549 47.826 0.00 0.00 39.48 3.49
396 397 3.451540 ACACTACTAGGGAAAAGCCTAGC 59.548 47.826 0.00 0.00 39.48 3.42
397 398 5.046520 ACAACACTACTAGGGAAAAGCCTAG 60.047 44.000 0.00 0.00 41.06 3.02
398 399 4.842380 ACAACACTACTAGGGAAAAGCCTA 59.158 41.667 0.00 0.00 36.66 3.93
399 400 3.651423 ACAACACTACTAGGGAAAAGCCT 59.349 43.478 0.00 0.00 36.66 4.58
400 401 3.751698 CACAACACTACTAGGGAAAAGCC 59.248 47.826 0.00 0.00 0.00 4.35
401 402 3.188667 GCACAACACTACTAGGGAAAAGC 59.811 47.826 0.00 0.00 0.00 3.51
402 403 4.452455 CAGCACAACACTACTAGGGAAAAG 59.548 45.833 0.00 0.00 0.00 2.27
405 406 3.236047 TCAGCACAACACTACTAGGGAA 58.764 45.455 0.00 0.00 0.00 3.97
406 407 2.884320 TCAGCACAACACTACTAGGGA 58.116 47.619 0.00 0.00 0.00 4.20
407 408 3.006967 ACTTCAGCACAACACTACTAGGG 59.993 47.826 0.00 0.00 0.00 3.53
408 409 4.258702 ACTTCAGCACAACACTACTAGG 57.741 45.455 0.00 0.00 0.00 3.02
409 410 6.604735 AAAACTTCAGCACAACACTACTAG 57.395 37.500 0.00 0.00 0.00 2.57
410 411 6.995511 AAAAACTTCAGCACAACACTACTA 57.004 33.333 0.00 0.00 0.00 1.82
411 412 5.897377 AAAAACTTCAGCACAACACTACT 57.103 34.783 0.00 0.00 0.00 2.57
439 440 1.000052 CTGCATCATGTGGTGTTTGCA 60.000 47.619 0.00 0.00 41.90 4.08
440 441 1.670674 CCTGCATCATGTGGTGTTTGC 60.671 52.381 0.00 0.00 38.02 3.68
441 442 1.887854 TCCTGCATCATGTGGTGTTTG 59.112 47.619 0.00 0.00 0.00 2.93
444 445 1.683938 CCATCCTGCATCATGTGGTGT 60.684 52.381 0.00 0.00 0.00 4.16
445 446 1.029681 CCATCCTGCATCATGTGGTG 58.970 55.000 0.00 0.00 0.00 4.17
446 447 0.921166 TCCATCCTGCATCATGTGGT 59.079 50.000 0.00 0.00 0.00 4.16
447 448 1.954382 CTTCCATCCTGCATCATGTGG 59.046 52.381 0.00 0.00 0.00 4.17
449 450 3.285484 GTTCTTCCATCCTGCATCATGT 58.715 45.455 0.00 0.00 0.00 3.21
451 452 3.657398 TGTTCTTCCATCCTGCATCAT 57.343 42.857 0.00 0.00 0.00 2.45
452 453 3.438216 TTGTTCTTCCATCCTGCATCA 57.562 42.857 0.00 0.00 0.00 3.07
524 526 0.969149 TAGCTAGCCCATCCGATGTG 59.031 55.000 12.13 0.00 0.00 3.21
525 527 1.261480 CTAGCTAGCCCATCCGATGT 58.739 55.000 12.13 0.00 0.00 3.06
533 535 2.201490 ATCCGCCTAGCTAGCCCA 59.799 61.111 15.74 0.00 0.00 5.36
534 536 1.261238 ATCATCCGCCTAGCTAGCCC 61.261 60.000 15.74 7.34 0.00 5.19
552 554 8.585471 TCAGCAGGATGATTTTTCTAAGAAAT 57.415 30.769 0.00 0.00 39.69 2.17
553 555 8.585471 ATCAGCAGGATGATTTTTCTAAGAAA 57.415 30.769 0.00 0.00 39.69 2.52
555 557 6.769822 GGATCAGCAGGATGATTTTTCTAAGA 59.230 38.462 1.15 0.00 40.02 2.10
556 558 6.544931 TGGATCAGCAGGATGATTTTTCTAAG 59.455 38.462 1.15 0.00 40.02 2.18
557 559 6.425735 TGGATCAGCAGGATGATTTTTCTAA 58.574 36.000 1.15 0.00 40.02 2.10
558 560 6.005066 TGGATCAGCAGGATGATTTTTCTA 57.995 37.500 1.15 0.00 40.02 2.10
562 564 4.765856 GCTATGGATCAGCAGGATGATTTT 59.234 41.667 1.15 0.00 40.02 1.82
572 574 1.047801 TTAGCGGCTATGGATCAGCA 58.952 50.000 11.04 0.00 40.95 4.41
579 581 4.083271 GCCTTTAGAATTTAGCGGCTATGG 60.083 45.833 11.04 1.88 33.47 2.74
635 637 6.612247 TCTCTGCGATAACAACTTCAAAAA 57.388 33.333 0.00 0.00 0.00 1.94
636 638 6.037720 TGTTCTCTGCGATAACAACTTCAAAA 59.962 34.615 6.91 0.00 28.37 2.44
941 1513 1.010793 TCACTAGTTGGGGATGGGGAT 59.989 52.381 0.00 0.00 0.00 3.85
942 1514 0.419865 TCACTAGTTGGGGATGGGGA 59.580 55.000 0.00 0.00 0.00 4.81
943 1515 0.839946 CTCACTAGTTGGGGATGGGG 59.160 60.000 0.00 0.00 0.00 4.96
944 1516 1.210478 CACTCACTAGTTGGGGATGGG 59.790 57.143 0.00 0.00 31.97 4.00
945 1517 1.909302 ACACTCACTAGTTGGGGATGG 59.091 52.381 0.00 0.00 31.97 3.51
963 1535 1.003839 GCCTCACATCGGGTTCACA 60.004 57.895 0.00 0.00 0.00 3.58
986 1558 2.006748 TCCATGGCGGAGGGATTTT 58.993 52.632 6.96 0.00 39.64 1.82
1837 2445 2.995939 CGTGCAGACATTGTAGATGTGT 59.004 45.455 0.00 0.00 31.52 3.72
1927 2541 2.880890 GACTGTGCATGACCTTGAAGTT 59.119 45.455 0.00 0.00 0.00 2.66
2006 2620 2.030893 CGTGACACAAACTTGCCATGAT 60.031 45.455 6.37 0.00 0.00 2.45
2026 2640 9.088512 GTCCCATTATCTATTGACTTATTAGCG 57.911 37.037 0.00 0.00 0.00 4.26
2139 2753 2.420022 GTCCCATTGACACATTCCTTCG 59.580 50.000 0.00 0.00 43.85 3.79
2331 2948 7.039011 ACAAAGGAGAGTAATGTATCACAGTCA 60.039 37.037 0.00 0.00 0.00 3.41
2705 3327 1.982660 TCGAGTCTAGGTATGCCTGG 58.017 55.000 13.35 10.05 46.47 4.45
2799 5978 6.545504 AAGTATTAGCAATTACATGAGCCG 57.454 37.500 0.00 0.00 0.00 5.52
2888 6485 1.751927 GCACCTGGGAGCTCCAATG 60.752 63.158 33.29 22.16 46.51 2.82
2889 6486 2.679716 GCACCTGGGAGCTCCAAT 59.320 61.111 33.29 12.97 46.51 3.16
2890 6487 3.650950 GGCACCTGGGAGCTCCAA 61.651 66.667 33.29 23.06 46.51 3.53
2891 6488 4.980592 TGGCACCTGGGAGCTCCA 62.981 66.667 33.29 18.37 44.79 3.86
2892 6489 4.416738 GTGGCACCTGGGAGCTCC 62.417 72.222 25.59 25.59 32.43 4.70
2893 6490 3.640407 TGTGGCACCTGGGAGCTC 61.640 66.667 16.26 4.71 32.43 4.09
2894 6491 3.958860 GTGTGGCACCTGGGAGCT 61.959 66.667 16.26 0.00 32.43 4.09
2895 6492 4.269523 TGTGTGGCACCTGGGAGC 62.270 66.667 16.26 1.24 32.73 4.70
2896 6493 2.281761 GTGTGTGGCACCTGGGAG 60.282 66.667 16.26 0.00 42.10 4.30
2970 6573 2.736670 GGCACCCAGGTTTGATATCT 57.263 50.000 3.98 0.00 0.00 1.98
3005 6608 4.626042 CACCCATTCCAAACGAAATTGAA 58.374 39.130 0.00 0.00 33.08 2.69
3009 6612 1.275010 GGCACCCATTCCAAACGAAAT 59.725 47.619 0.00 0.00 33.08 2.17
3055 6658 2.160205 GATGGATCGTCTATCGGACCA 58.840 52.381 0.00 0.00 43.69 4.02
3063 6666 7.393234 AGAAAAACAATTTGGATGGATCGTCTA 59.607 33.333 0.78 0.00 0.00 2.59
3112 6716 6.461509 GGTGCCCATGATAATCTTGGTAAAAG 60.462 42.308 0.00 0.00 39.34 2.27
3120 6724 3.569491 CAAGGGTGCCCATGATAATCTT 58.431 45.455 10.26 0.00 36.99 2.40
3144 6748 3.680786 GGTTTCGTGGGGCAAGGC 61.681 66.667 0.00 0.00 0.00 4.35
3145 6749 3.361977 CGGTTTCGTGGGGCAAGG 61.362 66.667 0.00 0.00 0.00 3.61
3146 6750 1.894756 TTCGGTTTCGTGGGGCAAG 60.895 57.895 0.00 0.00 37.69 4.01
3147 6751 2.188161 GTTCGGTTTCGTGGGGCAA 61.188 57.895 0.00 0.00 37.69 4.52
3148 6752 2.592287 GTTCGGTTTCGTGGGGCA 60.592 61.111 0.00 0.00 37.69 5.36
3149 6753 2.592287 TGTTCGGTTTCGTGGGGC 60.592 61.111 0.00 0.00 37.69 5.80
3150 6754 2.600475 CGTGTTCGGTTTCGTGGGG 61.600 63.158 0.00 0.00 37.69 4.96
3151 6755 2.932905 CGTGTTCGGTTTCGTGGG 59.067 61.111 0.00 0.00 37.69 4.61
3161 6765 2.861935 GTCCATTGTATACCCGTGTTCG 59.138 50.000 0.00 0.00 0.00 3.95
3172 6776 3.075283 TCAAACCTGGGTGTCCATTGTAT 59.925 43.478 0.00 0.00 43.11 2.29
3181 6785 2.283834 TGGGATATCAAACCTGGGTGT 58.716 47.619 4.83 0.00 0.00 4.16
3242 6847 5.873164 CCGTACACCCCTATTTGAATATAGC 59.127 44.000 0.00 0.00 0.00 2.97
3286 6891 3.925379 AGCGCAATATATCGTGGATGAA 58.075 40.909 11.47 0.00 0.00 2.57
3296 6901 5.009631 TCCAGGCAATAAAGCGCAATATAT 58.990 37.500 11.47 0.00 34.64 0.86
3319 6924 3.923563 GAGCGTGCGACTGAGCCTT 62.924 63.158 0.00 0.00 36.02 4.35
3351 6956 1.183549 CACTACGACCAGCCTAAGGT 58.816 55.000 0.00 0.00 43.46 3.50
3352 6957 0.460311 CCACTACGACCAGCCTAAGG 59.540 60.000 0.00 0.00 0.00 2.69
3403 7008 6.599445 ACGGAGGTAGTATCATACACTAGTT 58.401 40.000 0.00 0.00 0.00 2.24
3436 7041 9.962809 ACCACCTAAGATACTAGTCTATGATAC 57.037 37.037 0.00 0.00 0.00 2.24
3438 7043 8.896658 AGACCACCTAAGATACTAGTCTATGAT 58.103 37.037 0.00 0.00 31.84 2.45
3439 7044 8.277720 AGACCACCTAAGATACTAGTCTATGA 57.722 38.462 0.00 0.00 31.84 2.15
3440 7045 8.927675 AAGACCACCTAAGATACTAGTCTATG 57.072 38.462 0.00 0.00 33.21 2.23
3443 7048 9.939424 AAATAAGACCACCTAAGATACTAGTCT 57.061 33.333 0.00 0.00 34.94 3.24
3489 7094 8.559536 CCGTGTCATAATAAATTCAATGCTACT 58.440 33.333 0.00 0.00 0.00 2.57
3490 7095 8.342634 ACCGTGTCATAATAAATTCAATGCTAC 58.657 33.333 0.00 0.00 0.00 3.58
3491 7096 8.445275 ACCGTGTCATAATAAATTCAATGCTA 57.555 30.769 0.00 0.00 0.00 3.49
3492 7097 7.333528 ACCGTGTCATAATAAATTCAATGCT 57.666 32.000 0.00 0.00 0.00 3.79
3493 7098 9.329913 GATACCGTGTCATAATAAATTCAATGC 57.670 33.333 0.00 0.00 0.00 3.56
3541 7146 6.315393 GTGGCGTAGAATTAAATGAGGAAAGA 59.685 38.462 0.00 0.00 0.00 2.52
3561 7166 1.632422 GCAATTTTGATGAGGTGGCG 58.368 50.000 0.00 0.00 0.00 5.69
3596 7201 8.531982 TGTAATGGGAGTATCATAGTTAGCATC 58.468 37.037 0.00 0.00 36.25 3.91
3599 7204 9.372369 GATTGTAATGGGAGTATCATAGTTAGC 57.628 37.037 0.00 0.00 36.25 3.09
3624 7229 4.072131 CCAAGTACTTGCTTTAAGGCTGA 58.928 43.478 27.05 0.00 40.84 4.26
3846 7466 7.501515 GCATAAGCACATTTACAAAAGAACAC 58.498 34.615 0.00 0.00 41.58 3.32
3975 7596 1.225426 GATGGGCATGGAGTCTGCA 59.775 57.895 6.69 0.00 41.47 4.41
4003 7624 2.030540 CCAGTGTTTTGGCTGATCACAG 60.031 50.000 0.00 0.00 45.91 3.66
4017 7638 5.476945 ACAAGTTTCTCAGTTTTCCAGTGTT 59.523 36.000 0.00 0.00 0.00 3.32
4163 7784 3.687698 GCCTTGCTTTCCGTAATTGAGTA 59.312 43.478 0.00 0.00 0.00 2.59
4308 7929 5.218139 CAAACCAGAAGCTTGTGAGAATTC 58.782 41.667 24.21 0.00 0.00 2.17
4367 8004 7.093858 TTGACATATTCTGGCAACATGAATTCA 60.094 33.333 11.26 11.26 46.09 2.57
4752 8404 6.753913 ATCTCCCATCTAAACAGCTTATCA 57.246 37.500 0.00 0.00 0.00 2.15
4859 8512 0.457851 TGGCAACCTTGTTTGGAACG 59.542 50.000 0.00 0.00 0.00 3.95
5044 8697 2.935955 GAGTGCGAAACCACGGTG 59.064 61.111 0.00 0.00 40.59 4.94
5061 8714 0.962489 ACTGTCCACTGGAGTCTTCG 59.038 55.000 0.00 0.00 29.39 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.