Multiple sequence alignment - TraesCS2D01G258900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G258900 chr2D 100.000 2513 0 0 1 2513 314794145 314796657 0.000000e+00 4641.0
1 TraesCS2D01G258900 chr2D 97.526 1900 16 5 91 1962 314564551 314566447 0.000000e+00 3219.0
2 TraesCS2D01G258900 chr2D 93.610 1299 44 11 473 1739 314054365 314053074 0.000000e+00 1903.0
3 TraesCS2D01G258900 chr2D 97.368 532 13 1 1892 2422 314048286 314047755 0.000000e+00 904.0
4 TraesCS2D01G258900 chr2D 83.702 362 32 16 1738 2092 314046243 314045902 1.450000e-82 316.0
5 TraesCS2D01G258900 chr2D 83.432 338 32 8 1768 2092 314051471 314051145 2.440000e-75 292.0
6 TraesCS2D01G258900 chr2D 88.321 137 11 4 1958 2092 314566634 314566767 2.590000e-35 159.0
7 TraesCS2D01G258900 chr2D 95.946 74 2 1 1667 1739 314046342 314046269 4.390000e-23 119.0
8 TraesCS2D01G258900 chr2D 84.956 113 14 1 1991 2103 314498886 314498995 7.350000e-21 111.0
9 TraesCS2D01G258900 chr2D 95.556 45 2 0 1738 1782 314053048 314053004 3.470000e-09 73.1
10 TraesCS2D01G258900 chr2A 91.194 863 43 10 473 1304 421061003 421060143 0.000000e+00 1142.0
11 TraesCS2D01G258900 chr2A 87.297 984 75 21 1150 2101 421060258 421059293 0.000000e+00 1079.0
12 TraesCS2D01G258900 chr2A 86.503 978 80 25 1158 2103 422103349 422104306 0.000000e+00 1027.0
13 TraesCS2D01G258900 chr2A 88.889 855 59 14 456 1301 422221324 422222151 0.000000e+00 1020.0
14 TraesCS2D01G258900 chr2A 94.901 608 25 5 694 1301 422102852 422103453 0.000000e+00 946.0
15 TraesCS2D01G258900 chr2A 84.205 975 103 24 1150 2101 422222039 422222985 0.000000e+00 900.0
16 TraesCS2D01G258900 chr2A 95.954 173 7 0 2341 2513 421059060 421058888 5.290000e-72 281.0
17 TraesCS2D01G258900 chr2A 92.262 168 10 3 526 693 422102633 422102797 4.180000e-58 235.0
18 TraesCS2D01G258900 chr2A 85.075 67 7 1 1991 2057 421062811 421062748 5.800000e-07 65.8
19 TraesCS2D01G258900 chr2B 94.976 617 26 2 685 1301 382731834 382732445 0.000000e+00 963.0
20 TraesCS2D01G258900 chr2B 93.792 596 32 2 709 1304 381914984 381914394 0.000000e+00 891.0
21 TraesCS2D01G258900 chr2B 91.195 636 28 7 93 702 382731187 382731820 0.000000e+00 839.0
22 TraesCS2D01G258900 chr2B 89.465 598 46 5 1158 1739 382732341 382732937 0.000000e+00 739.0
23 TraesCS2D01G258900 chr2B 91.607 417 31 1 1158 1570 381914501 381914085 7.800000e-160 573.0
24 TraesCS2D01G258900 chr2B 86.337 344 28 13 1751 2092 381908660 381908334 8.550000e-95 357.0
25 TraesCS2D01G258900 chr2B 95.376 173 8 0 2341 2513 382734233 382734405 2.460000e-70 276.0
26 TraesCS2D01G258900 chr2B 83.828 303 28 9 1751 2049 382732983 382733268 4.120000e-68 268.0
27 TraesCS2D01G258900 chr2B 94.000 150 2 1 1597 1739 381908855 381908706 1.170000e-53 220.0
28 TraesCS2D01G258900 chr2B 87.931 58 4 1 1991 2048 382598193 382598247 5.800000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G258900 chr2D 314794145 314796657 2512 False 4641.000000 4641 100.000000 1 2513 1 chr2D.!!$F2 2512
1 TraesCS2D01G258900 chr2D 314564551 314566767 2216 False 1689.000000 3219 92.923500 91 2092 2 chr2D.!!$F3 2001
2 TraesCS2D01G258900 chr2D 314045902 314054365 8463 True 601.183333 1903 91.602333 473 2422 6 chr2D.!!$R1 1949
3 TraesCS2D01G258900 chr2A 422221324 422222985 1661 False 960.000000 1020 86.547000 456 2101 2 chr2A.!!$F2 1645
4 TraesCS2D01G258900 chr2A 422102633 422104306 1673 False 736.000000 1027 91.222000 526 2103 3 chr2A.!!$F1 1577
5 TraesCS2D01G258900 chr2A 421058888 421062811 3923 True 641.950000 1142 89.880000 473 2513 4 chr2A.!!$R1 2040
6 TraesCS2D01G258900 chr2B 381914085 381914984 899 True 732.000000 891 92.699500 709 1570 2 chr2B.!!$R2 861
7 TraesCS2D01G258900 chr2B 382731187 382734405 3218 False 617.000000 963 90.968000 93 2513 5 chr2B.!!$F2 2420
8 TraesCS2D01G258900 chr2B 381908334 381908855 521 True 288.500000 357 90.168500 1597 2092 2 chr2B.!!$R1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 1.380302 GGAAGCTTCCCTGAGCCAA 59.62 57.895 31.91 0.0 43.74 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 10560 2.957402 TTCTTCCTGTTGTGATGGCT 57.043 45.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.081554 GGAAGCTTCCCTGAGCCA 58.918 61.111 31.91 0.00 43.74 4.75
19 20 1.380302 GGAAGCTTCCCTGAGCCAA 59.620 57.895 31.91 0.00 43.74 4.52
22 23 2.174360 GAAGCTTCCCTGAGCCAAATT 58.826 47.619 15.97 0.00 43.74 1.82
23 24 2.315720 AGCTTCCCTGAGCCAAATTT 57.684 45.000 0.00 0.00 43.74 1.82
26 27 2.564504 GCTTCCCTGAGCCAAATTTTCT 59.435 45.455 0.00 0.00 36.66 2.52
27 28 3.007290 GCTTCCCTGAGCCAAATTTTCTT 59.993 43.478 0.00 0.00 36.66 2.52
28 29 4.503817 GCTTCCCTGAGCCAAATTTTCTTT 60.504 41.667 0.00 0.00 36.66 2.52
29 30 5.614308 CTTCCCTGAGCCAAATTTTCTTTT 58.386 37.500 0.00 0.00 0.00 2.27
31 32 4.040339 TCCCTGAGCCAAATTTTCTTTTCC 59.960 41.667 0.00 0.00 0.00 3.13
32 33 4.040829 CCCTGAGCCAAATTTTCTTTTCCT 59.959 41.667 0.00 0.00 0.00 3.36
33 34 5.455183 CCCTGAGCCAAATTTTCTTTTCCTT 60.455 40.000 0.00 0.00 0.00 3.36
34 35 6.057533 CCTGAGCCAAATTTTCTTTTCCTTT 58.942 36.000 0.00 0.00 0.00 3.11
35 36 6.543465 CCTGAGCCAAATTTTCTTTTCCTTTT 59.457 34.615 0.00 0.00 0.00 2.27
36 37 7.319142 TGAGCCAAATTTTCTTTTCCTTTTG 57.681 32.000 0.00 0.00 0.00 2.44
38 39 7.392953 TGAGCCAAATTTTCTTTTCCTTTTGTT 59.607 29.630 0.00 0.00 0.00 2.83
39 40 8.121305 AGCCAAATTTTCTTTTCCTTTTGTTT 57.879 26.923 0.00 0.00 0.00 2.83
40 41 8.584157 AGCCAAATTTTCTTTTCCTTTTGTTTT 58.416 25.926 0.00 0.00 0.00 2.43
41 42 9.202273 GCCAAATTTTCTTTTCCTTTTGTTTTT 57.798 25.926 0.00 0.00 0.00 1.94
45 46 9.605955 AATTTTCTTTTCCTTTTGTTTTTGTCG 57.394 25.926 0.00 0.00 0.00 4.35
46 47 5.771602 TCTTTTCCTTTTGTTTTTGTCGC 57.228 34.783 0.00 0.00 0.00 5.19
47 48 5.230942 TCTTTTCCTTTTGTTTTTGTCGCA 58.769 33.333 0.00 0.00 0.00 5.10
48 49 5.872070 TCTTTTCCTTTTGTTTTTGTCGCAT 59.128 32.000 0.00 0.00 0.00 4.73
49 50 5.462034 TTTCCTTTTGTTTTTGTCGCATG 57.538 34.783 0.00 0.00 0.00 4.06
50 51 3.452474 TCCTTTTGTTTTTGTCGCATGG 58.548 40.909 0.00 0.00 0.00 3.66
51 52 3.118956 TCCTTTTGTTTTTGTCGCATGGT 60.119 39.130 0.00 0.00 0.00 3.55
53 54 4.987912 CCTTTTGTTTTTGTCGCATGGTAT 59.012 37.500 0.00 0.00 0.00 2.73
55 56 6.018343 CCTTTTGTTTTTGTCGCATGGTATTT 60.018 34.615 0.00 0.00 0.00 1.40
56 57 6.910536 TTTGTTTTTGTCGCATGGTATTTT 57.089 29.167 0.00 0.00 0.00 1.82
57 58 6.517914 TTGTTTTTGTCGCATGGTATTTTC 57.482 33.333 0.00 0.00 0.00 2.29
58 59 5.837437 TGTTTTTGTCGCATGGTATTTTCT 58.163 33.333 0.00 0.00 0.00 2.52
59 60 5.918011 TGTTTTTGTCGCATGGTATTTTCTC 59.082 36.000 0.00 0.00 0.00 2.87
60 61 5.957842 TTTTGTCGCATGGTATTTTCTCT 57.042 34.783 0.00 0.00 0.00 3.10
61 62 4.944962 TTGTCGCATGGTATTTTCTCTG 57.055 40.909 0.00 0.00 0.00 3.35
62 63 3.937814 TGTCGCATGGTATTTTCTCTGT 58.062 40.909 0.00 0.00 0.00 3.41
63 64 4.323417 TGTCGCATGGTATTTTCTCTGTT 58.677 39.130 0.00 0.00 0.00 3.16
64 65 4.759693 TGTCGCATGGTATTTTCTCTGTTT 59.240 37.500 0.00 0.00 0.00 2.83
65 66 5.240623 TGTCGCATGGTATTTTCTCTGTTTT 59.759 36.000 0.00 0.00 0.00 2.43
66 67 6.428465 TGTCGCATGGTATTTTCTCTGTTTTA 59.572 34.615 0.00 0.00 0.00 1.52
68 69 7.640240 GTCGCATGGTATTTTCTCTGTTTTATC 59.360 37.037 0.00 0.00 0.00 1.75
69 70 7.552687 TCGCATGGTATTTTCTCTGTTTTATCT 59.447 33.333 0.00 0.00 0.00 1.98
70 71 8.184192 CGCATGGTATTTTCTCTGTTTTATCTT 58.816 33.333 0.00 0.00 0.00 2.40
71 72 9.860898 GCATGGTATTTTCTCTGTTTTATCTTT 57.139 29.630 0.00 0.00 0.00 2.52
115 116 4.997395 TCTTCTTCTTCTTAAGCGTGCATT 59.003 37.500 0.00 0.00 0.00 3.56
116 117 5.470098 TCTTCTTCTTCTTAAGCGTGCATTT 59.530 36.000 0.00 0.00 0.00 2.32
454 483 8.515473 AATTCGAGAACCCTTTTTAAATTTCG 57.485 30.769 0.00 0.00 0.00 3.46
1986 10560 0.679505 AGCTACTCTGCAACGAACCA 59.320 50.000 0.00 0.00 34.99 3.67
2007 10581 3.057736 CAGCCATCACAACAGGAAGAAAG 60.058 47.826 0.00 0.00 0.00 2.62
2028 10602 4.248842 TGGTCCACCCACAGCGTG 62.249 66.667 0.00 2.27 38.72 5.34
2030 10604 4.626081 GTCCACCCACAGCGTGCT 62.626 66.667 3.56 0.00 31.34 4.40
2031 10605 2.920384 TCCACCCACAGCGTGCTA 60.920 61.111 0.00 0.00 31.34 3.49
2040 10614 1.731709 CACAGCGTGCTAGCACAAATA 59.268 47.619 38.95 7.39 46.47 1.40
2051 11315 7.216317 CGTGCTAGCACAAATAATTCAGTTAAC 59.784 37.037 38.95 12.85 46.47 2.01
2052 11316 8.020819 GTGCTAGCACAAATAATTCAGTTAACA 58.979 33.333 36.93 0.00 45.53 2.41
2053 11317 8.236586 TGCTAGCACAAATAATTCAGTTAACAG 58.763 33.333 14.93 0.00 0.00 3.16
2054 11318 7.218963 GCTAGCACAAATAATTCAGTTAACAGC 59.781 37.037 10.63 0.00 0.00 4.40
2057 11323 7.925483 AGCACAAATAATTCAGTTAACAGCAAA 59.075 29.630 8.61 0.00 0.00 3.68
2074 11340 2.815589 GCAAAGGGACCTTCACACAGAT 60.816 50.000 3.71 0.00 34.84 2.90
2080 11346 3.600388 GGACCTTCACACAGATACTTGG 58.400 50.000 0.00 0.00 0.00 3.61
2085 11351 7.016153 ACCTTCACACAGATACTTGGATTTA 57.984 36.000 0.00 0.00 0.00 1.40
2088 11354 7.554118 CCTTCACACAGATACTTGGATTTATGT 59.446 37.037 0.00 0.00 0.00 2.29
2110 11376 7.167924 TGTATACACAACATACTTCCGGTAA 57.832 36.000 0.08 0.00 33.74 2.85
2112 11378 8.911965 TGTATACACAACATACTTCCGGTAATA 58.088 33.333 0.08 0.00 33.74 0.98
2113 11379 9.918630 GTATACACAACATACTTCCGGTAATAT 57.081 33.333 0.00 0.00 33.74 1.28
2116 11382 8.241497 ACACAACATACTTCCGGTAATATCTA 57.759 34.615 0.00 0.00 33.74 1.98
2118 11384 7.328737 CACAACATACTTCCGGTAATATCTAGC 59.671 40.741 0.00 0.00 33.74 3.42
2119 11385 6.527057 ACATACTTCCGGTAATATCTAGCC 57.473 41.667 0.00 0.00 33.74 3.93
2121 11387 6.153000 ACATACTTCCGGTAATATCTAGCCAG 59.847 42.308 0.00 0.00 33.74 4.85
2125 11391 5.464030 TCCGGTAATATCTAGCCAGTTTC 57.536 43.478 0.00 0.00 0.00 2.78
2126 11392 4.897076 TCCGGTAATATCTAGCCAGTTTCA 59.103 41.667 0.00 0.00 0.00 2.69
2127 11393 5.364446 TCCGGTAATATCTAGCCAGTTTCAA 59.636 40.000 0.00 0.00 0.00 2.69
2128 11394 5.696724 CCGGTAATATCTAGCCAGTTTCAAG 59.303 44.000 0.00 0.00 0.00 3.02
2129 11395 5.696724 CGGTAATATCTAGCCAGTTTCAAGG 59.303 44.000 0.00 0.00 0.00 3.61
2139 11405 4.391405 CCAGTTTCAAGGCTCAAAAGTT 57.609 40.909 0.00 0.00 0.00 2.66
2141 11407 5.901552 CCAGTTTCAAGGCTCAAAAGTTAA 58.098 37.500 0.00 0.00 0.00 2.01
2142 11408 6.337356 CCAGTTTCAAGGCTCAAAAGTTAAA 58.663 36.000 0.00 0.00 0.00 1.52
2143 11409 6.255670 CCAGTTTCAAGGCTCAAAAGTTAAAC 59.744 38.462 0.00 0.00 0.00 2.01
2144 11410 6.255670 CAGTTTCAAGGCTCAAAAGTTAAACC 59.744 38.462 0.00 0.00 0.00 3.27
2146 11412 5.257082 TCAAGGCTCAAAAGTTAAACCAC 57.743 39.130 0.00 0.00 0.00 4.16
2148 11414 4.918810 AGGCTCAAAAGTTAAACCACAG 57.081 40.909 0.00 0.00 0.00 3.66
2149 11415 4.278310 AGGCTCAAAAGTTAAACCACAGT 58.722 39.130 0.00 0.00 0.00 3.55
2150 11416 5.442391 AGGCTCAAAAGTTAAACCACAGTA 58.558 37.500 0.00 0.00 0.00 2.74
2152 11418 6.039382 AGGCTCAAAAGTTAAACCACAGTAAG 59.961 38.462 0.00 0.00 0.00 2.34
2153 11419 6.038936 GGCTCAAAAGTTAAACCACAGTAAGA 59.961 38.462 0.00 0.00 0.00 2.10
2155 11421 8.135529 GCTCAAAAGTTAAACCACAGTAAGAAT 58.864 33.333 0.00 0.00 0.00 2.40
2162 11428 9.490379 AGTTAAACCACAGTAAGAATAACTCAG 57.510 33.333 0.00 0.00 29.02 3.35
2164 11430 7.730364 AAACCACAGTAAGAATAACTCAGTG 57.270 36.000 0.00 0.00 0.00 3.66
2165 11431 5.238583 ACCACAGTAAGAATAACTCAGTGC 58.761 41.667 0.00 0.00 0.00 4.40
2168 11434 5.928839 CACAGTAAGAATAACTCAGTGCACT 59.071 40.000 15.25 15.25 0.00 4.40
2169 11435 6.090088 CACAGTAAGAATAACTCAGTGCACTC 59.910 42.308 18.64 3.06 0.00 3.51
2170 11436 6.159293 CAGTAAGAATAACTCAGTGCACTCA 58.841 40.000 18.64 2.09 0.00 3.41
2171 11437 6.309980 CAGTAAGAATAACTCAGTGCACTCAG 59.690 42.308 17.07 17.07 0.00 3.35
2172 11438 3.594134 AGAATAACTCAGTGCACTCAGC 58.406 45.455 18.65 0.54 45.96 4.26
2173 11439 2.393271 ATAACTCAGTGCACTCAGCC 57.607 50.000 18.65 0.00 44.83 4.85
2174 11440 1.342074 TAACTCAGTGCACTCAGCCT 58.658 50.000 18.65 7.92 44.83 4.58
2175 11441 1.342074 AACTCAGTGCACTCAGCCTA 58.658 50.000 18.65 0.00 44.83 3.93
2176 11442 1.342074 ACTCAGTGCACTCAGCCTAA 58.658 50.000 18.65 0.00 44.83 2.69
2177 11443 1.001406 ACTCAGTGCACTCAGCCTAAC 59.999 52.381 18.65 0.00 44.83 2.34
2178 11444 1.274728 CTCAGTGCACTCAGCCTAACT 59.725 52.381 18.64 0.00 44.83 2.24
2209 11558 7.754069 TTCAAAATTTCAGTTACAAGTGCAG 57.246 32.000 0.00 0.00 0.00 4.41
2220 11569 5.931146 AGTTACAAGTGCAGATTCAGAGAAG 59.069 40.000 0.00 0.00 0.00 2.85
2221 11570 4.348863 ACAAGTGCAGATTCAGAGAAGT 57.651 40.909 0.00 0.00 0.00 3.01
2224 11573 2.822561 AGTGCAGATTCAGAGAAGTCGA 59.177 45.455 0.00 0.00 0.00 4.20
2229 11578 4.202060 GCAGATTCAGAGAAGTCGATACCA 60.202 45.833 0.00 0.00 0.00 3.25
2234 11583 3.869832 TCAGAGAAGTCGATACCACTACG 59.130 47.826 0.00 0.00 0.00 3.51
2235 11584 3.622163 CAGAGAAGTCGATACCACTACGT 59.378 47.826 0.00 0.00 0.00 3.57
2236 11585 3.622163 AGAGAAGTCGATACCACTACGTG 59.378 47.826 0.00 0.00 0.00 4.49
2245 11594 3.706373 CACTACGTGGGCCAGCCT 61.706 66.667 6.40 0.00 36.10 4.58
2246 11595 3.391382 ACTACGTGGGCCAGCCTC 61.391 66.667 6.40 0.00 36.10 4.70
2247 11596 3.390521 CTACGTGGGCCAGCCTCA 61.391 66.667 6.40 2.14 36.10 3.86
2249 11598 2.257409 CTACGTGGGCCAGCCTCATT 62.257 60.000 6.40 0.15 36.10 2.57
2250 11599 2.252072 TACGTGGGCCAGCCTCATTC 62.252 60.000 6.40 0.00 36.10 2.67
2251 11600 2.356278 GTGGGCCAGCCTCATTCA 59.644 61.111 6.40 0.00 36.10 2.57
2252 11601 1.304381 GTGGGCCAGCCTCATTCAA 60.304 57.895 6.40 0.00 36.10 2.69
2253 11602 1.000521 TGGGCCAGCCTCATTCAAG 60.001 57.895 0.00 0.00 36.10 3.02
2254 11603 1.304282 GGGCCAGCCTCATTCAAGA 59.696 57.895 4.39 0.00 36.10 3.02
2255 11604 0.323725 GGGCCAGCCTCATTCAAGAA 60.324 55.000 4.39 0.00 36.10 2.52
2256 11605 1.549203 GGCCAGCCTCATTCAAGAAA 58.451 50.000 0.00 0.00 0.00 2.52
2257 11606 2.105766 GGCCAGCCTCATTCAAGAAAT 58.894 47.619 0.00 0.00 0.00 2.17
2258 11607 2.100418 GGCCAGCCTCATTCAAGAAATC 59.900 50.000 0.00 0.00 0.00 2.17
2259 11608 2.756760 GCCAGCCTCATTCAAGAAATCA 59.243 45.455 0.00 0.00 0.00 2.57
2260 11609 3.383825 GCCAGCCTCATTCAAGAAATCAT 59.616 43.478 0.00 0.00 0.00 2.45
2261 11610 4.581824 GCCAGCCTCATTCAAGAAATCATA 59.418 41.667 0.00 0.00 0.00 2.15
2262 11611 5.506982 GCCAGCCTCATTCAAGAAATCATAC 60.507 44.000 0.00 0.00 0.00 2.39
2263 11612 5.826737 CCAGCCTCATTCAAGAAATCATACT 59.173 40.000 0.00 0.00 0.00 2.12
2264 11613 6.238676 CCAGCCTCATTCAAGAAATCATACTG 60.239 42.308 0.00 0.00 0.00 2.74
2265 11614 6.541278 CAGCCTCATTCAAGAAATCATACTGA 59.459 38.462 0.00 0.00 0.00 3.41
2266 11615 7.066645 CAGCCTCATTCAAGAAATCATACTGAA 59.933 37.037 0.00 0.00 0.00 3.02
2267 11616 7.613022 AGCCTCATTCAAGAAATCATACTGAAA 59.387 33.333 0.00 0.00 0.00 2.69
2268 11617 8.411683 GCCTCATTCAAGAAATCATACTGAAAT 58.588 33.333 0.00 0.00 0.00 2.17
2277 11626 9.696917 AAGAAATCATACTGAAATTGAACAACC 57.303 29.630 0.00 0.00 0.00 3.77
2278 11627 8.859090 AGAAATCATACTGAAATTGAACAACCA 58.141 29.630 0.00 0.00 0.00 3.67
2279 11628 9.474920 GAAATCATACTGAAATTGAACAACCAA 57.525 29.630 0.00 0.00 0.00 3.67
2280 11629 9.829507 AAATCATACTGAAATTGAACAACCAAA 57.170 25.926 0.00 0.00 0.00 3.28
2283 11632 9.829507 TCATACTGAAATTGAACAACCAAATTT 57.170 25.926 0.00 0.00 0.00 1.82
2287 11636 9.665719 ACTGAAATTGAACAACCAAATTTACTT 57.334 25.926 0.00 0.00 0.00 2.24
2293 11642 7.532682 TGAACAACCAAATTTACTTTTCAGC 57.467 32.000 0.00 0.00 0.00 4.26
2294 11643 7.099764 TGAACAACCAAATTTACTTTTCAGCA 58.900 30.769 0.00 0.00 0.00 4.41
2295 11644 7.277539 TGAACAACCAAATTTACTTTTCAGCAG 59.722 33.333 0.00 0.00 0.00 4.24
2296 11645 6.048509 ACAACCAAATTTACTTTTCAGCAGG 58.951 36.000 0.00 0.00 0.00 4.85
2297 11646 6.127196 ACAACCAAATTTACTTTTCAGCAGGA 60.127 34.615 0.00 0.00 0.00 3.86
2298 11647 6.670695 ACCAAATTTACTTTTCAGCAGGAT 57.329 33.333 0.00 0.00 0.00 3.24
2299 11648 7.775053 ACCAAATTTACTTTTCAGCAGGATA 57.225 32.000 0.00 0.00 0.00 2.59
2300 11649 8.189119 ACCAAATTTACTTTTCAGCAGGATAA 57.811 30.769 0.00 0.00 0.00 1.75
2301 11650 8.646900 ACCAAATTTACTTTTCAGCAGGATAAA 58.353 29.630 0.00 0.00 0.00 1.40
2302 11651 9.143631 CCAAATTTACTTTTCAGCAGGATAAAG 57.856 33.333 0.00 0.00 33.56 1.85
2303 11652 9.696917 CAAATTTACTTTTCAGCAGGATAAAGT 57.303 29.630 15.58 15.58 38.80 2.66
2305 11654 9.696917 AATTTACTTTTCAGCAGGATAAAGTTG 57.303 29.630 16.06 0.00 37.66 3.16
2306 11655 8.458573 TTTACTTTTCAGCAGGATAAAGTTGA 57.541 30.769 16.06 0.00 37.66 3.18
2307 11656 6.959639 ACTTTTCAGCAGGATAAAGTTGAA 57.040 33.333 0.00 0.00 35.35 2.69
2308 11657 7.346751 ACTTTTCAGCAGGATAAAGTTGAAA 57.653 32.000 0.00 0.00 41.19 2.69
2309 11658 7.781056 ACTTTTCAGCAGGATAAAGTTGAAAA 58.219 30.769 13.66 13.66 45.85 2.29
2325 11674 4.916983 TGAAAACTTGAGTTCCACATGG 57.083 40.909 0.00 0.00 37.25 3.66
2326 11675 3.636300 TGAAAACTTGAGTTCCACATGGG 59.364 43.478 0.00 0.00 37.25 4.00
2327 11676 1.620822 AACTTGAGTTCCACATGGGC 58.379 50.000 0.00 0.00 36.21 5.36
2328 11677 0.773644 ACTTGAGTTCCACATGGGCT 59.226 50.000 0.00 0.00 36.21 5.19
2329 11678 1.145738 ACTTGAGTTCCACATGGGCTT 59.854 47.619 0.00 0.00 36.21 4.35
2330 11679 1.542915 CTTGAGTTCCACATGGGCTTG 59.457 52.381 0.00 0.00 36.21 4.01
2331 11680 0.895100 TGAGTTCCACATGGGCTTGC 60.895 55.000 0.00 0.00 36.21 4.01
2332 11681 0.895100 GAGTTCCACATGGGCTTGCA 60.895 55.000 0.00 0.00 36.21 4.08
2333 11682 0.469705 AGTTCCACATGGGCTTGCAA 60.470 50.000 0.00 0.00 36.21 4.08
2334 11683 0.392336 GTTCCACATGGGCTTGCAAA 59.608 50.000 0.00 0.00 36.21 3.68
2335 11684 0.392336 TTCCACATGGGCTTGCAAAC 59.608 50.000 0.00 0.00 36.21 2.93
2336 11685 1.004679 CCACATGGGCTTGCAAACC 60.005 57.895 10.57 10.57 0.00 3.27
2337 11686 1.747145 CACATGGGCTTGCAAACCA 59.253 52.632 20.12 20.55 38.88 3.67
2338 11687 0.322322 CACATGGGCTTGCAAACCAT 59.678 50.000 22.97 22.97 45.48 3.55
2339 11688 1.549620 CACATGGGCTTGCAAACCATA 59.450 47.619 26.20 14.11 42.85 2.74
2369 11718 3.603158 TTACTCGAGCAGGCATAAACA 57.397 42.857 13.61 0.00 0.00 2.83
2423 11772 3.496130 ACAAACAGCTGAATGAGAAGACG 59.504 43.478 23.35 0.00 0.00 4.18
2439 11788 3.498927 AGACGTACTAATTGACCACGG 57.501 47.619 0.00 0.00 36.95 4.94
2445 11794 2.786777 ACTAATTGACCACGGGTTTCC 58.213 47.619 0.00 0.00 35.25 3.13
2453 11802 1.063492 ACCACGGGTTTCCCTTTTCTT 60.063 47.619 3.25 0.00 42.67 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.251341 TTTGGCTCAGGGAAGCTTCC 60.251 55.000 33.67 33.67 46.82 3.46
2 3 1.844687 ATTTGGCTCAGGGAAGCTTC 58.155 50.000 18.54 18.54 42.13 3.86
4 5 2.315720 AAATTTGGCTCAGGGAAGCT 57.684 45.000 0.00 0.00 42.13 3.74
5 6 2.564504 AGAAAATTTGGCTCAGGGAAGC 59.435 45.455 0.00 0.00 41.73 3.86
6 7 4.879197 AAGAAAATTTGGCTCAGGGAAG 57.121 40.909 0.00 0.00 0.00 3.46
7 8 5.454613 GGAAAAGAAAATTTGGCTCAGGGAA 60.455 40.000 0.00 0.00 0.00 3.97
8 9 4.040339 GGAAAAGAAAATTTGGCTCAGGGA 59.960 41.667 0.00 0.00 0.00 4.20
9 10 4.040829 AGGAAAAGAAAATTTGGCTCAGGG 59.959 41.667 0.00 0.00 0.00 4.45
10 11 5.219343 AGGAAAAGAAAATTTGGCTCAGG 57.781 39.130 0.00 0.00 0.00 3.86
15 16 8.755696 AAAACAAAAGGAAAAGAAAATTTGGC 57.244 26.923 0.00 0.00 33.31 4.52
19 20 9.605955 CGACAAAAACAAAAGGAAAAGAAAATT 57.394 25.926 0.00 0.00 0.00 1.82
22 23 6.202954 TGCGACAAAAACAAAAGGAAAAGAAA 59.797 30.769 0.00 0.00 0.00 2.52
23 24 5.696724 TGCGACAAAAACAAAAGGAAAAGAA 59.303 32.000 0.00 0.00 0.00 2.52
26 27 5.163814 CCATGCGACAAAAACAAAAGGAAAA 60.164 36.000 0.00 0.00 0.00 2.29
27 28 4.331168 CCATGCGACAAAAACAAAAGGAAA 59.669 37.500 0.00 0.00 0.00 3.13
28 29 3.868077 CCATGCGACAAAAACAAAAGGAA 59.132 39.130 0.00 0.00 0.00 3.36
29 30 3.118956 ACCATGCGACAAAAACAAAAGGA 60.119 39.130 0.00 0.00 0.00 3.36
31 32 6.523676 AATACCATGCGACAAAAACAAAAG 57.476 33.333 0.00 0.00 0.00 2.27
32 33 6.910536 AAATACCATGCGACAAAAACAAAA 57.089 29.167 0.00 0.00 0.00 2.44
33 34 6.758886 AGAAAATACCATGCGACAAAAACAAA 59.241 30.769 0.00 0.00 0.00 2.83
34 35 6.276847 AGAAAATACCATGCGACAAAAACAA 58.723 32.000 0.00 0.00 0.00 2.83
35 36 5.837437 AGAAAATACCATGCGACAAAAACA 58.163 33.333 0.00 0.00 0.00 2.83
36 37 6.088085 CAGAGAAAATACCATGCGACAAAAAC 59.912 38.462 0.00 0.00 0.00 2.43
38 39 5.240623 ACAGAGAAAATACCATGCGACAAAA 59.759 36.000 0.00 0.00 0.00 2.44
39 40 4.759693 ACAGAGAAAATACCATGCGACAAA 59.240 37.500 0.00 0.00 0.00 2.83
40 41 4.323417 ACAGAGAAAATACCATGCGACAA 58.677 39.130 0.00 0.00 0.00 3.18
41 42 3.937814 ACAGAGAAAATACCATGCGACA 58.062 40.909 0.00 0.00 0.00 4.35
42 43 4.946784 AACAGAGAAAATACCATGCGAC 57.053 40.909 0.00 0.00 0.00 5.19
43 44 5.957842 AAAACAGAGAAAATACCATGCGA 57.042 34.783 0.00 0.00 0.00 5.10
44 45 7.697691 AGATAAAACAGAGAAAATACCATGCG 58.302 34.615 0.00 0.00 0.00 4.73
45 46 9.860898 AAAGATAAAACAGAGAAAATACCATGC 57.139 29.630 0.00 0.00 0.00 4.06
75 76 9.774413 AAGAAGAAGAAGAAGGTAAAATTACGA 57.226 29.630 0.00 0.00 34.50 3.43
82 83 9.274206 GCTTAAGAAGAAGAAGAAGAAGGTAAA 57.726 33.333 6.67 0.00 0.00 2.01
83 84 7.599245 CGCTTAAGAAGAAGAAGAAGAAGGTAA 59.401 37.037 6.67 0.00 0.00 2.85
84 85 7.091443 CGCTTAAGAAGAAGAAGAAGAAGGTA 58.909 38.462 6.67 0.00 0.00 3.08
86 87 5.929415 ACGCTTAAGAAGAAGAAGAAGAAGG 59.071 40.000 6.67 0.00 0.00 3.46
88 89 5.177696 GCACGCTTAAGAAGAAGAAGAAGAA 59.822 40.000 6.67 0.00 0.00 2.52
357 361 7.631750 CGAAATTTAAAAATGTCCATGCATTCG 59.368 33.333 0.00 0.00 38.03 3.34
639 1987 0.391927 CTATTTCCCAACCCGTGCGA 60.392 55.000 0.00 0.00 0.00 5.10
1986 10560 2.957402 TTCTTCCTGTTGTGATGGCT 57.043 45.000 0.00 0.00 0.00 4.75
2026 10600 8.020819 TGTTAACTGAATTATTTGTGCTAGCAC 58.979 33.333 35.76 35.76 46.33 4.40
2028 10602 7.218963 GCTGTTAACTGAATTATTTGTGCTAGC 59.781 37.037 15.89 8.10 0.00 3.42
2029 10603 8.236586 TGCTGTTAACTGAATTATTTGTGCTAG 58.763 33.333 15.89 0.00 0.00 3.42
2030 10604 8.105097 TGCTGTTAACTGAATTATTTGTGCTA 57.895 30.769 15.89 0.00 0.00 3.49
2031 10605 6.980593 TGCTGTTAACTGAATTATTTGTGCT 58.019 32.000 15.89 0.00 0.00 4.40
2040 10614 4.280929 GGTCCCTTTGCTGTTAACTGAATT 59.719 41.667 15.89 0.00 0.00 2.17
2051 11315 0.954452 GTGTGAAGGTCCCTTTGCTG 59.046 55.000 0.00 0.00 36.26 4.41
2052 11316 0.550914 TGTGTGAAGGTCCCTTTGCT 59.449 50.000 0.00 0.00 36.26 3.91
2053 11317 0.954452 CTGTGTGAAGGTCCCTTTGC 59.046 55.000 0.00 0.00 36.26 3.68
2054 11318 2.638480 TCTGTGTGAAGGTCCCTTTG 57.362 50.000 0.00 0.00 36.26 2.77
2057 11323 3.191888 AGTATCTGTGTGAAGGTCCCT 57.808 47.619 0.00 0.00 0.00 4.20
2085 11351 6.229936 ACCGGAAGTATGTTGTGTATACAT 57.770 37.500 9.46 0.00 39.44 2.29
2103 11369 4.897076 TGAAACTGGCTAGATATTACCGGA 59.103 41.667 9.46 0.00 32.61 5.14
2104 11370 5.209818 TGAAACTGGCTAGATATTACCGG 57.790 43.478 3.17 0.00 34.56 5.28
2105 11371 5.696724 CCTTGAAACTGGCTAGATATTACCG 59.303 44.000 3.17 0.00 0.00 4.02
2118 11384 4.391405 AACTTTTGAGCCTTGAAACTGG 57.609 40.909 0.00 0.00 0.00 4.00
2119 11385 6.255670 GGTTTAACTTTTGAGCCTTGAAACTG 59.744 38.462 0.00 0.00 0.00 3.16
2121 11387 6.035650 GTGGTTTAACTTTTGAGCCTTGAAAC 59.964 38.462 0.00 0.00 0.00 2.78
2125 11391 5.004922 TGTGGTTTAACTTTTGAGCCTTG 57.995 39.130 0.00 0.00 0.00 3.61
2126 11392 4.709886 ACTGTGGTTTAACTTTTGAGCCTT 59.290 37.500 0.00 0.00 0.00 4.35
2127 11393 4.278310 ACTGTGGTTTAACTTTTGAGCCT 58.722 39.130 0.00 0.00 0.00 4.58
2128 11394 4.649088 ACTGTGGTTTAACTTTTGAGCC 57.351 40.909 0.00 0.00 0.00 4.70
2129 11395 7.023197 TCTTACTGTGGTTTAACTTTTGAGC 57.977 36.000 0.00 0.00 0.00 4.26
2136 11402 9.490379 CTGAGTTATTCTTACTGTGGTTTAACT 57.510 33.333 0.00 0.00 32.85 2.24
2137 11403 9.269453 ACTGAGTTATTCTTACTGTGGTTTAAC 57.731 33.333 0.00 0.00 0.00 2.01
2138 11404 9.268268 CACTGAGTTATTCTTACTGTGGTTTAA 57.732 33.333 0.00 0.00 0.00 1.52
2139 11405 7.386848 GCACTGAGTTATTCTTACTGTGGTTTA 59.613 37.037 0.00 0.00 0.00 2.01
2141 11407 5.701290 GCACTGAGTTATTCTTACTGTGGTT 59.299 40.000 0.00 0.00 0.00 3.67
2142 11408 5.221641 TGCACTGAGTTATTCTTACTGTGGT 60.222 40.000 0.00 0.00 0.00 4.16
2143 11409 5.120830 GTGCACTGAGTTATTCTTACTGTGG 59.879 44.000 10.32 0.00 0.00 4.17
2144 11410 5.928839 AGTGCACTGAGTTATTCTTACTGTG 59.071 40.000 20.97 0.00 0.00 3.66
2146 11412 6.159293 TGAGTGCACTGAGTTATTCTTACTG 58.841 40.000 27.27 0.00 0.00 2.74
2148 11414 5.062809 GCTGAGTGCACTGAGTTATTCTTAC 59.937 44.000 30.07 10.05 42.31 2.34
2149 11415 5.171476 GCTGAGTGCACTGAGTTATTCTTA 58.829 41.667 30.07 0.00 42.31 2.10
2150 11416 3.999663 GCTGAGTGCACTGAGTTATTCTT 59.000 43.478 30.07 0.61 42.31 2.52
2152 11418 2.675348 GGCTGAGTGCACTGAGTTATTC 59.325 50.000 30.07 15.51 45.15 1.75
2153 11419 2.304180 AGGCTGAGTGCACTGAGTTATT 59.696 45.455 30.07 13.47 45.15 1.40
2155 11421 1.342074 AGGCTGAGTGCACTGAGTTA 58.658 50.000 30.07 9.17 45.15 2.24
2157 11423 1.001406 GTTAGGCTGAGTGCACTGAGT 59.999 52.381 30.07 16.69 45.15 3.41
2158 11424 1.274728 AGTTAGGCTGAGTGCACTGAG 59.725 52.381 26.79 26.79 45.15 3.35
2160 11426 3.923354 AGTTAGGCTGAGTGCACTG 57.077 52.632 27.27 12.38 45.15 3.66
2182 11448 9.160496 TGCACTTGTAACTGAAATTTTGAAATT 57.840 25.926 0.00 0.00 40.15 1.82
2183 11449 8.715191 TGCACTTGTAACTGAAATTTTGAAAT 57.285 26.923 0.00 0.00 0.00 2.17
2184 11450 8.031864 TCTGCACTTGTAACTGAAATTTTGAAA 58.968 29.630 0.00 0.00 0.00 2.69
2187 11453 7.935338 ATCTGCACTTGTAACTGAAATTTTG 57.065 32.000 0.00 0.00 0.00 2.44
2189 11455 7.715657 TGAATCTGCACTTGTAACTGAAATTT 58.284 30.769 0.00 0.00 0.00 1.82
2191 11457 6.712095 TCTGAATCTGCACTTGTAACTGAAAT 59.288 34.615 0.00 0.00 0.00 2.17
2193 11459 5.610398 TCTGAATCTGCACTTGTAACTGAA 58.390 37.500 0.00 0.00 0.00 3.02
2194 11460 5.011023 TCTCTGAATCTGCACTTGTAACTGA 59.989 40.000 0.00 0.00 0.00 3.41
2195 11461 5.233225 TCTCTGAATCTGCACTTGTAACTG 58.767 41.667 0.00 0.00 0.00 3.16
2196 11462 5.474578 TCTCTGAATCTGCACTTGTAACT 57.525 39.130 0.00 0.00 0.00 2.24
2197 11463 5.698545 ACTTCTCTGAATCTGCACTTGTAAC 59.301 40.000 0.00 0.00 0.00 2.50
2198 11464 5.858381 ACTTCTCTGAATCTGCACTTGTAA 58.142 37.500 0.00 0.00 0.00 2.41
2200 11466 4.314121 GACTTCTCTGAATCTGCACTTGT 58.686 43.478 0.00 0.00 0.00 3.16
2203 11469 2.822561 TCGACTTCTCTGAATCTGCACT 59.177 45.455 0.00 0.00 0.00 4.40
2204 11470 3.223423 TCGACTTCTCTGAATCTGCAC 57.777 47.619 0.00 0.00 0.00 4.57
2205 11471 4.202060 GGTATCGACTTCTCTGAATCTGCA 60.202 45.833 0.00 0.00 0.00 4.41
2206 11472 4.202060 TGGTATCGACTTCTCTGAATCTGC 60.202 45.833 0.00 0.00 0.00 4.26
2209 11558 5.508200 AGTGGTATCGACTTCTCTGAATC 57.492 43.478 0.00 0.00 0.00 2.52
2234 11583 1.304381 TTGAATGAGGCTGGCCCAC 60.304 57.895 8.11 3.94 36.58 4.61
2235 11584 1.000521 CTTGAATGAGGCTGGCCCA 60.001 57.895 8.11 6.62 36.58 5.36
2236 11585 0.323725 TTCTTGAATGAGGCTGGCCC 60.324 55.000 8.11 0.85 36.58 5.80
2237 11586 1.549203 TTTCTTGAATGAGGCTGGCC 58.451 50.000 3.00 3.00 0.00 5.36
2238 11587 2.756760 TGATTTCTTGAATGAGGCTGGC 59.243 45.455 0.00 0.00 0.00 4.85
2239 11588 5.826737 AGTATGATTTCTTGAATGAGGCTGG 59.173 40.000 0.00 0.00 0.00 4.85
2240 11589 6.541278 TCAGTATGATTTCTTGAATGAGGCTG 59.459 38.462 0.00 0.00 42.56 4.85
2241 11590 6.656902 TCAGTATGATTTCTTGAATGAGGCT 58.343 36.000 0.00 0.00 42.56 4.58
2242 11591 6.932356 TCAGTATGATTTCTTGAATGAGGC 57.068 37.500 0.00 0.00 42.56 4.70
2261 11610 9.665719 AAGTAAATTTGGTTGTTCAATTTCAGT 57.334 25.926 0.00 0.00 0.00 3.41
2267 11616 8.611757 GCTGAAAAGTAAATTTGGTTGTTCAAT 58.388 29.630 0.00 0.00 0.00 2.57
2268 11617 7.604164 TGCTGAAAAGTAAATTTGGTTGTTCAA 59.396 29.630 0.00 0.00 0.00 2.69
2269 11618 7.099764 TGCTGAAAAGTAAATTTGGTTGTTCA 58.900 30.769 0.00 3.00 0.00 3.18
2270 11619 7.254421 CCTGCTGAAAAGTAAATTTGGTTGTTC 60.254 37.037 0.00 0.00 0.00 3.18
2271 11620 6.538381 CCTGCTGAAAAGTAAATTTGGTTGTT 59.462 34.615 0.00 0.00 0.00 2.83
2272 11621 6.048509 CCTGCTGAAAAGTAAATTTGGTTGT 58.951 36.000 0.00 0.00 0.00 3.32
2273 11622 6.279882 TCCTGCTGAAAAGTAAATTTGGTTG 58.720 36.000 0.00 0.00 0.00 3.77
2274 11623 6.478512 TCCTGCTGAAAAGTAAATTTGGTT 57.521 33.333 0.00 0.00 0.00 3.67
2275 11624 6.670695 ATCCTGCTGAAAAGTAAATTTGGT 57.329 33.333 0.00 0.00 0.00 3.67
2276 11625 9.143631 CTTTATCCTGCTGAAAAGTAAATTTGG 57.856 33.333 0.00 0.00 0.00 3.28
2277 11626 9.696917 ACTTTATCCTGCTGAAAAGTAAATTTG 57.303 29.630 0.00 0.00 39.67 2.32
2279 11628 9.696917 CAACTTTATCCTGCTGAAAAGTAAATT 57.303 29.630 14.38 2.84 40.35 1.82
2280 11629 9.077885 TCAACTTTATCCTGCTGAAAAGTAAAT 57.922 29.630 14.38 3.08 40.35 1.40
2281 11630 8.458573 TCAACTTTATCCTGCTGAAAAGTAAA 57.541 30.769 14.38 7.27 40.35 2.01
2282 11631 8.458573 TTCAACTTTATCCTGCTGAAAAGTAA 57.541 30.769 14.38 7.57 40.35 2.24
2283 11632 8.458573 TTTCAACTTTATCCTGCTGAAAAGTA 57.541 30.769 14.38 3.56 40.35 2.24
2284 11633 6.959639 TTCAACTTTATCCTGCTGAAAAGT 57.040 33.333 10.63 10.63 42.40 2.66
2285 11634 7.922811 AGTTTTCAACTTTATCCTGCTGAAAAG 59.077 33.333 7.76 7.21 41.11 2.27
2286 11635 7.781056 AGTTTTCAACTTTATCCTGCTGAAAA 58.219 30.769 4.20 4.20 39.04 2.29
2287 11636 7.346751 AGTTTTCAACTTTATCCTGCTGAAA 57.653 32.000 0.00 0.00 39.04 2.69
2288 11637 6.959639 AGTTTTCAACTTTATCCTGCTGAA 57.040 33.333 0.00 0.00 39.04 3.02
2296 11645 8.188139 TGTGGAACTCAAGTTTTCAACTTTATC 58.812 33.333 0.00 0.00 43.30 1.75
2297 11646 8.062065 TGTGGAACTCAAGTTTTCAACTTTAT 57.938 30.769 0.00 0.00 43.30 1.40
2298 11647 7.455641 TGTGGAACTCAAGTTTTCAACTTTA 57.544 32.000 0.00 0.00 43.30 1.85
2299 11648 6.339587 TGTGGAACTCAAGTTTTCAACTTT 57.660 33.333 0.00 0.00 43.30 2.66
2300 11649 5.975693 TGTGGAACTCAAGTTTTCAACTT 57.024 34.783 0.00 0.00 45.40 2.66
2301 11650 5.163519 CCATGTGGAACTCAAGTTTTCAACT 60.164 40.000 0.00 0.00 40.26 3.16
2302 11651 5.043248 CCATGTGGAACTCAAGTTTTCAAC 58.957 41.667 0.00 0.00 38.56 3.18
2303 11652 4.099266 CCCATGTGGAACTCAAGTTTTCAA 59.901 41.667 0.00 0.00 38.56 2.69
2304 11653 3.636300 CCCATGTGGAACTCAAGTTTTCA 59.364 43.478 0.00 0.00 38.56 2.69
2305 11654 3.552890 GCCCATGTGGAACTCAAGTTTTC 60.553 47.826 0.00 0.00 38.56 2.29
2306 11655 2.365293 GCCCATGTGGAACTCAAGTTTT 59.635 45.455 0.00 0.00 38.56 2.43
2307 11656 1.963515 GCCCATGTGGAACTCAAGTTT 59.036 47.619 0.00 0.00 38.56 2.66
2308 11657 1.145738 AGCCCATGTGGAACTCAAGTT 59.854 47.619 0.00 0.00 41.64 2.66
2309 11658 0.773644 AGCCCATGTGGAACTCAAGT 59.226 50.000 0.00 0.00 38.04 3.16
2310 11659 1.542915 CAAGCCCATGTGGAACTCAAG 59.457 52.381 0.00 0.00 38.04 3.02
2311 11660 1.619654 CAAGCCCATGTGGAACTCAA 58.380 50.000 0.00 0.00 38.04 3.02
2312 11661 0.895100 GCAAGCCCATGTGGAACTCA 60.895 55.000 0.00 0.00 38.04 3.41
2313 11662 0.895100 TGCAAGCCCATGTGGAACTC 60.895 55.000 0.00 0.00 38.04 3.01
2314 11663 0.469705 TTGCAAGCCCATGTGGAACT 60.470 50.000 0.00 0.00 38.04 3.01
2315 11664 0.392336 TTTGCAAGCCCATGTGGAAC 59.608 50.000 0.00 0.00 37.39 3.62
2316 11665 0.392336 GTTTGCAAGCCCATGTGGAA 59.608 50.000 1.15 0.00 37.39 3.53
2317 11666 1.470996 GGTTTGCAAGCCCATGTGGA 61.471 55.000 20.85 0.00 37.39 4.02
2318 11667 1.004679 GGTTTGCAAGCCCATGTGG 60.005 57.895 20.85 0.00 37.09 4.17
2319 11668 0.322322 ATGGTTTGCAAGCCCATGTG 59.678 50.000 27.16 0.00 37.58 3.21
2320 11669 1.935799 TATGGTTTGCAAGCCCATGT 58.064 45.000 29.22 17.30 39.29 3.21
2321 11670 3.331478 TTTATGGTTTGCAAGCCCATG 57.669 42.857 29.22 0.00 39.29 3.66
2322 11671 4.263435 CATTTTATGGTTTGCAAGCCCAT 58.737 39.130 27.16 26.76 41.70 4.00
2323 11672 3.558746 CCATTTTATGGTTTGCAAGCCCA 60.559 43.478 27.16 22.70 45.54 5.36
2324 11673 3.009026 CCATTTTATGGTTTGCAAGCCC 58.991 45.455 27.16 18.12 45.54 5.19
2336 11685 5.820131 TGCTCGAGTAAATGCCATTTTATG 58.180 37.500 15.13 0.00 33.82 1.90
2337 11686 5.009010 CCTGCTCGAGTAAATGCCATTTTAT 59.991 40.000 15.13 0.00 33.82 1.40
2338 11687 4.335315 CCTGCTCGAGTAAATGCCATTTTA 59.665 41.667 15.13 0.00 33.82 1.52
2339 11688 3.129287 CCTGCTCGAGTAAATGCCATTTT 59.871 43.478 15.13 0.00 33.82 1.82
2369 11718 5.473504 GGTGAGTTCAACATGTCAGGTTTAT 59.526 40.000 0.00 0.00 32.77 1.40
2423 11772 3.686241 GGAAACCCGTGGTCAATTAGTAC 59.314 47.826 0.00 0.00 33.12 2.73
2445 11794 4.725490 TGGGAGGTTGAAGTAAGAAAAGG 58.275 43.478 0.00 0.00 0.00 3.11
2453 11802 5.367352 TGTTTCTAGTTGGGAGGTTGAAGTA 59.633 40.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.