Multiple sequence alignment - TraesCS2D01G258800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G258800 chr2D 100.000 2513 0 0 1 2513 314564486 314566998 0.000000e+00 4641.0
1 TraesCS2D01G258800 chr2D 97.526 1900 16 5 66 1962 314794235 314796106 0.000000e+00 3219.0
2 TraesCS2D01G258800 chr2D 89.081 1621 102 33 159 1739 314054659 314053074 0.000000e+00 1943.0
3 TraesCS2D01G258800 chr2D 94.030 201 5 2 1957 2150 12381647 12381847 5.260000e-77 298.0
4 TraesCS2D01G258800 chr2D 93.103 203 5 4 1959 2153 603598917 603599118 3.160000e-74 289.0
5 TraesCS2D01G258800 chr2D 95.890 146 6 0 2368 2513 314050599 314050454 1.160000e-58 237.0
6 TraesCS2D01G258800 chr2D 95.804 143 6 0 2152 2294 314046032 314045890 5.410000e-57 231.0
7 TraesCS2D01G258800 chr2D 91.946 149 5 6 2147 2292 314051279 314051135 4.240000e-48 202.0
8 TraesCS2D01G258800 chr2D 82.895 228 18 11 1738 1960 314046243 314046032 4.270000e-43 185.0
9 TraesCS2D01G258800 chr2D 88.321 137 11 4 2149 2282 314796102 314796236 2.590000e-35 159.0
10 TraesCS2D01G258800 chr2D 96.429 84 2 1 2294 2377 314566749 314566831 1.210000e-28 137.0
11 TraesCS2D01G258800 chr2D 96.429 84 2 1 2264 2346 314566779 314566862 1.210000e-28 137.0
12 TraesCS2D01G258800 chr2D 89.583 96 9 1 1768 1862 314051471 314051376 1.220000e-23 121.0
13 TraesCS2D01G258800 chr2D 97.101 69 2 0 1892 1960 314048286 314048218 1.580000e-22 117.0
14 TraesCS2D01G258800 chr2D 94.595 74 3 1 1667 1739 314046342 314046269 2.040000e-21 113.0
15 TraesCS2D01G258800 chr2D 94.444 54 2 1 2324 2377 314566749 314566801 5.760000e-12 82.4
16 TraesCS2D01G258800 chr2D 94.444 54 2 1 2264 2316 314566809 314566862 5.760000e-12 82.4
17 TraesCS2D01G258800 chr2D 95.556 45 2 0 1738 1782 314053048 314053004 3.470000e-09 73.1
18 TraesCS2D01G258800 chr2D 84.211 76 2 3 1887 1962 314051339 314051274 5.800000e-07 65.8
19 TraesCS2D01G258800 chr2A 88.416 1010 63 20 329 1304 421061132 421060143 0.000000e+00 1168.0
20 TraesCS2D01G258800 chr2A 89.136 856 54 16 457 1301 422221324 422222151 0.000000e+00 1029.0
21 TraesCS2D01G258800 chr2A 94.901 608 25 5 694 1301 422102852 422103453 0.000000e+00 946.0
22 TraesCS2D01G258800 chr2A 87.396 841 62 16 1150 1960 421060258 421059432 0.000000e+00 926.0
23 TraesCS2D01G258800 chr2A 86.315 833 68 20 1158 1960 422103349 422104165 0.000000e+00 865.0
24 TraesCS2D01G258800 chr2A 83.313 833 93 20 1150 1961 422222039 422222846 0.000000e+00 726.0
25 TraesCS2D01G258800 chr2A 78.112 498 72 22 212 693 422102321 422102797 5.290000e-72 281.0
26 TraesCS2D01G258800 chr2A 96.241 133 5 0 2149 2281 422222843 422222975 4.210000e-53 219.0
27 TraesCS2D01G258800 chr2A 95.385 130 6 0 2152 2281 422104165 422104294 9.110000e-50 207.0
28 TraesCS2D01G258800 chr2A 94.656 131 7 0 2152 2282 421059432 421059302 1.180000e-48 204.0
29 TraesCS2D01G258800 chr2A 89.109 101 9 2 2395 2494 422223142 422223241 9.440000e-25 124.0
30 TraesCS2D01G258800 chr2B 94.468 705 31 8 1 702 382731121 382731820 0.000000e+00 1079.0
31 TraesCS2D01G258800 chr2B 94.976 617 26 2 685 1301 382731834 382732445 0.000000e+00 963.0
32 TraesCS2D01G258800 chr2B 93.792 596 32 2 709 1304 381914984 381914394 0.000000e+00 891.0
33 TraesCS2D01G258800 chr2B 88.963 598 49 5 1158 1739 382732341 382732937 0.000000e+00 723.0
34 TraesCS2D01G258800 chr2B 91.127 417 33 1 1158 1570 381914501 381914085 1.690000e-156 562.0
35 TraesCS2D01G258800 chr2B 96.018 226 3 1 2294 2513 381908352 381908127 1.840000e-96 363.0
36 TraesCS2D01G258800 chr2B 96.482 199 6 1 2149 2346 381908467 381908269 6.700000e-86 327.0
37 TraesCS2D01G258800 chr2B 93.333 150 3 1 1597 1739 381908855 381908706 5.440000e-52 215.0
38 TraesCS2D01G258800 chr2B 85.981 214 12 9 1751 1962 381908660 381908463 1.960000e-51 213.0
39 TraesCS2D01G258800 chr2B 81.944 216 21 6 1751 1962 382732983 382733184 1.550000e-37 167.0
40 TraesCS2D01G258800 chr2B 96.629 89 3 0 2149 2237 382733180 382733268 5.600000e-32 148.0
41 TraesCS2D01G258800 chr2B 94.444 54 2 1 2264 2316 381908322 381908269 5.760000e-12 82.4
42 TraesCS2D01G258800 chr2B 92.593 54 3 1 2324 2377 381908352 381908300 2.680000e-10 76.8
43 TraesCS2D01G258800 chr2B 95.652 46 2 0 2237 2282 382733958 382734003 9.640000e-10 75.0
44 TraesCS2D01G258800 chr3D 94.388 196 5 1 1961 2150 28447627 28447432 1.890000e-76 296.0
45 TraesCS2D01G258800 chr3D 93.564 202 6 2 1958 2152 4935966 4936167 6.800000e-76 294.0
46 TraesCS2D01G258800 chr3D 92.079 202 9 2 1958 2152 548511190 548510989 6.850000e-71 278.0
47 TraesCS2D01G258800 chr1D 93.500 200 6 4 1961 2153 434527812 434527613 8.790000e-75 291.0
48 TraesCS2D01G258800 chr1D 92.647 204 8 2 1958 2154 417259773 417259570 1.140000e-73 287.0
49 TraesCS2D01G258800 chr4D 92.079 202 9 2 1959 2153 152883693 152883492 6.850000e-71 278.0
50 TraesCS2D01G258800 chr4D 91.919 198 15 1 1959 2155 28552181 28551984 2.460000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G258800 chr2D 314564486 314566998 2512 False 1015.960000 4641 96.349200 1 2513 5 chr2D.!!$F3 2512
1 TraesCS2D01G258800 chr2D 314794235 314796236 2001 False 1689.000000 3219 92.923500 66 2282 2 chr2D.!!$F4 2216
2 TraesCS2D01G258800 chr2D 314045890 314054659 8769 True 328.790000 1943 91.666200 159 2513 10 chr2D.!!$R1 2354
3 TraesCS2D01G258800 chr2A 421059302 421061132 1830 True 766.000000 1168 90.156000 329 2282 3 chr2A.!!$R1 1953
4 TraesCS2D01G258800 chr2A 422102321 422104294 1973 False 574.750000 946 88.678250 212 2281 4 chr2A.!!$F1 2069
5 TraesCS2D01G258800 chr2A 422221324 422223241 1917 False 524.500000 1029 89.449750 457 2494 4 chr2A.!!$F2 2037
6 TraesCS2D01G258800 chr2B 381914085 381914984 899 True 726.500000 891 92.459500 709 1570 2 chr2B.!!$R2 861
7 TraesCS2D01G258800 chr2B 382731121 382734003 2882 False 525.833333 1079 92.105333 1 2282 6 chr2B.!!$F1 2281
8 TraesCS2D01G258800 chr2B 381908127 381908855 728 True 212.866667 363 93.141833 1597 2513 6 chr2B.!!$R1 916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 9.000486 CGTATTTTTACCTTCTTCTTCTTTCCT 58.0 33.333 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 9071 0.400525 CCTCCCCTAAGCATCTCCCA 60.401 60.0 0.0 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.000486 CGTATTTTTACCTTCTTCTTCTTTCCT 58.000 33.333 0.00 0.00 0.00 3.36
221 224 9.956797 CCAAATATGTGAACGATTTCAAAATTC 57.043 29.630 0.00 0.00 43.52 2.17
1671 1922 7.504238 TCTGGGTTGTGTTCATGTTAGTAAAAT 59.496 33.333 0.00 0.00 0.00 1.82
1963 9061 4.333926 CAGTTCCATTTCTACTGCTAAGGC 59.666 45.833 0.00 0.00 33.63 4.35
1964 9062 3.560636 TCCATTTCTACTGCTAAGGCC 57.439 47.619 0.00 0.00 37.74 5.19
1965 9063 3.115390 TCCATTTCTACTGCTAAGGCCT 58.885 45.455 0.00 0.00 37.74 5.19
1966 9064 3.523564 TCCATTTCTACTGCTAAGGCCTT 59.476 43.478 24.18 24.18 37.74 4.35
1967 9065 3.629398 CCATTTCTACTGCTAAGGCCTTG 59.371 47.826 28.77 18.05 37.74 3.61
1968 9066 4.265073 CATTTCTACTGCTAAGGCCTTGT 58.735 43.478 28.77 18.90 37.74 3.16
1969 9067 5.428253 CATTTCTACTGCTAAGGCCTTGTA 58.572 41.667 28.77 19.01 37.74 2.41
1970 9068 4.467198 TTCTACTGCTAAGGCCTTGTAC 57.533 45.455 28.77 16.75 37.74 2.90
1971 9069 3.437213 TCTACTGCTAAGGCCTTGTACA 58.563 45.455 28.77 20.23 37.74 2.90
1972 9070 3.835978 TCTACTGCTAAGGCCTTGTACAA 59.164 43.478 28.77 8.28 37.74 2.41
1973 9071 3.721087 ACTGCTAAGGCCTTGTACAAT 57.279 42.857 28.77 10.19 37.74 2.71
1974 9072 3.347216 ACTGCTAAGGCCTTGTACAATG 58.653 45.455 28.77 13.53 37.74 2.82
1975 9073 2.684881 CTGCTAAGGCCTTGTACAATGG 59.315 50.000 28.77 13.26 37.74 3.16
1976 9074 2.024414 GCTAAGGCCTTGTACAATGGG 58.976 52.381 28.77 14.91 0.00 4.00
1977 9075 2.356741 GCTAAGGCCTTGTACAATGGGA 60.357 50.000 28.77 2.40 0.00 4.37
1978 9076 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
1979 9077 1.668826 AGGCCTTGTACAATGGGAGA 58.331 50.000 16.08 0.00 0.00 3.71
1980 9078 2.208872 AGGCCTTGTACAATGGGAGAT 58.791 47.619 16.08 0.53 0.00 2.75
1981 9079 2.092212 AGGCCTTGTACAATGGGAGATG 60.092 50.000 16.08 0.00 0.00 2.90
1982 9080 1.678101 GCCTTGTACAATGGGAGATGC 59.322 52.381 16.08 3.76 0.00 3.91
1983 9081 2.684927 GCCTTGTACAATGGGAGATGCT 60.685 50.000 16.08 0.00 0.00 3.79
1984 9082 3.624777 CCTTGTACAATGGGAGATGCTT 58.375 45.455 9.13 0.00 0.00 3.91
1985 9083 4.780815 CCTTGTACAATGGGAGATGCTTA 58.219 43.478 9.13 0.00 0.00 3.09
1986 9084 4.818546 CCTTGTACAATGGGAGATGCTTAG 59.181 45.833 9.13 0.00 0.00 2.18
1987 9085 4.422073 TGTACAATGGGAGATGCTTAGG 57.578 45.455 0.00 0.00 0.00 2.69
1988 9086 3.136443 TGTACAATGGGAGATGCTTAGGG 59.864 47.826 0.00 0.00 0.00 3.53
1989 9087 1.496429 ACAATGGGAGATGCTTAGGGG 59.504 52.381 0.00 0.00 0.00 4.79
1990 9088 1.776667 CAATGGGAGATGCTTAGGGGA 59.223 52.381 0.00 0.00 0.00 4.81
1991 9089 1.739750 ATGGGAGATGCTTAGGGGAG 58.260 55.000 0.00 0.00 0.00 4.30
1992 9090 0.400525 TGGGAGATGCTTAGGGGAGG 60.401 60.000 0.00 0.00 0.00 4.30
1993 9091 0.400670 GGGAGATGCTTAGGGGAGGT 60.401 60.000 0.00 0.00 0.00 3.85
1994 9092 0.761802 GGAGATGCTTAGGGGAGGTG 59.238 60.000 0.00 0.00 0.00 4.00
1995 9093 1.501582 GAGATGCTTAGGGGAGGTGT 58.498 55.000 0.00 0.00 0.00 4.16
1996 9094 1.840635 GAGATGCTTAGGGGAGGTGTT 59.159 52.381 0.00 0.00 0.00 3.32
1997 9095 2.239907 GAGATGCTTAGGGGAGGTGTTT 59.760 50.000 0.00 0.00 0.00 2.83
1998 9096 3.454812 GAGATGCTTAGGGGAGGTGTTTA 59.545 47.826 0.00 0.00 0.00 2.01
1999 9097 3.456277 AGATGCTTAGGGGAGGTGTTTAG 59.544 47.826 0.00 0.00 0.00 1.85
2000 9098 2.910544 TGCTTAGGGGAGGTGTTTAGA 58.089 47.619 0.00 0.00 0.00 2.10
2001 9099 2.838202 TGCTTAGGGGAGGTGTTTAGAG 59.162 50.000 0.00 0.00 0.00 2.43
2002 9100 3.105283 GCTTAGGGGAGGTGTTTAGAGA 58.895 50.000 0.00 0.00 0.00 3.10
2003 9101 3.518303 GCTTAGGGGAGGTGTTTAGAGAA 59.482 47.826 0.00 0.00 0.00 2.87
2004 9102 4.019591 GCTTAGGGGAGGTGTTTAGAGAAA 60.020 45.833 0.00 0.00 0.00 2.52
2005 9103 5.339282 GCTTAGGGGAGGTGTTTAGAGAAAT 60.339 44.000 0.00 0.00 0.00 2.17
2006 9104 6.126854 GCTTAGGGGAGGTGTTTAGAGAAATA 60.127 42.308 0.00 0.00 0.00 1.40
2007 9105 7.582828 GCTTAGGGGAGGTGTTTAGAGAAATAA 60.583 40.741 0.00 0.00 0.00 1.40
2008 9106 6.713731 AGGGGAGGTGTTTAGAGAAATAAA 57.286 37.500 0.00 0.00 0.00 1.40
2009 9107 6.482524 AGGGGAGGTGTTTAGAGAAATAAAC 58.517 40.000 3.07 3.07 43.10 2.01
2010 9108 5.651139 GGGGAGGTGTTTAGAGAAATAAACC 59.349 44.000 6.84 0.00 42.45 3.27
2011 9109 6.243148 GGGAGGTGTTTAGAGAAATAAACCA 58.757 40.000 6.84 0.00 42.45 3.67
2012 9110 6.374613 GGGAGGTGTTTAGAGAAATAAACCAG 59.625 42.308 6.84 0.00 42.45 4.00
2013 9111 6.374613 GGAGGTGTTTAGAGAAATAAACCAGG 59.625 42.308 6.84 0.00 42.45 4.45
2014 9112 5.710567 AGGTGTTTAGAGAAATAAACCAGGC 59.289 40.000 6.84 0.00 42.45 4.85
2015 9113 5.710567 GGTGTTTAGAGAAATAAACCAGGCT 59.289 40.000 6.84 0.00 42.45 4.58
2016 9114 6.208797 GGTGTTTAGAGAAATAAACCAGGCTT 59.791 38.462 6.84 0.00 42.45 4.35
2017 9115 7.306213 GTGTTTAGAGAAATAAACCAGGCTTC 58.694 38.462 6.84 0.00 42.45 3.86
2018 9116 6.433093 TGTTTAGAGAAATAAACCAGGCTTCC 59.567 38.462 6.84 0.00 42.45 3.46
2019 9117 4.936685 AGAGAAATAAACCAGGCTTCCT 57.063 40.909 0.00 0.00 0.00 3.36
2020 9118 5.262455 AGAGAAATAAACCAGGCTTCCTT 57.738 39.130 0.00 0.00 0.00 3.36
2021 9119 6.388619 AGAGAAATAAACCAGGCTTCCTTA 57.611 37.500 0.00 0.00 0.00 2.69
2022 9120 6.790319 AGAGAAATAAACCAGGCTTCCTTAA 58.210 36.000 0.00 0.00 0.00 1.85
2023 9121 6.887002 AGAGAAATAAACCAGGCTTCCTTAAG 59.113 38.462 0.00 0.00 35.68 1.85
2043 9141 1.375551 CACCGGTGCCTATTTGTACC 58.624 55.000 24.02 0.00 0.00 3.34
2047 9145 1.949465 GGTGCCTATTTGTACCGGAG 58.051 55.000 9.46 0.00 0.00 4.63
2048 9146 1.483415 GGTGCCTATTTGTACCGGAGA 59.517 52.381 9.46 0.00 0.00 3.71
2049 9147 2.093341 GGTGCCTATTTGTACCGGAGAA 60.093 50.000 9.46 0.00 0.00 2.87
2050 9148 3.602483 GTGCCTATTTGTACCGGAGAAA 58.398 45.455 9.46 3.35 0.00 2.52
2051 9149 3.373130 GTGCCTATTTGTACCGGAGAAAC 59.627 47.826 9.46 0.70 0.00 2.78
2052 9150 2.606272 GCCTATTTGTACCGGAGAAACG 59.394 50.000 9.46 0.00 0.00 3.60
2053 9151 2.606272 CCTATTTGTACCGGAGAAACGC 59.394 50.000 9.46 0.00 0.00 4.84
2054 9152 2.467566 ATTTGTACCGGAGAAACGCT 57.532 45.000 9.46 0.00 0.00 5.07
2055 9153 2.243602 TTTGTACCGGAGAAACGCTT 57.756 45.000 9.46 0.00 0.00 4.68
2056 9154 3.383620 TTTGTACCGGAGAAACGCTTA 57.616 42.857 9.46 0.00 0.00 3.09
2057 9155 3.383620 TTGTACCGGAGAAACGCTTAA 57.616 42.857 9.46 0.00 0.00 1.85
2058 9156 2.676076 TGTACCGGAGAAACGCTTAAC 58.324 47.619 9.46 0.00 0.00 2.01
2059 9157 2.297033 TGTACCGGAGAAACGCTTAACT 59.703 45.455 9.46 0.00 0.00 2.24
2060 9158 3.505680 TGTACCGGAGAAACGCTTAACTA 59.494 43.478 9.46 0.00 0.00 2.24
2061 9159 3.665745 ACCGGAGAAACGCTTAACTAA 57.334 42.857 9.46 0.00 0.00 2.24
2062 9160 3.582780 ACCGGAGAAACGCTTAACTAAG 58.417 45.455 9.46 0.00 36.40 2.18
2077 9175 6.716934 TTAACTAAGCATCTCTCCTGTAGG 57.283 41.667 0.00 0.00 0.00 3.18
2078 9176 2.962421 ACTAAGCATCTCTCCTGTAGGC 59.038 50.000 0.00 0.00 34.44 3.93
2079 9177 1.871418 AAGCATCTCTCCTGTAGGCA 58.129 50.000 0.00 0.00 34.44 4.75
2080 9178 1.118838 AGCATCTCTCCTGTAGGCAC 58.881 55.000 0.00 0.00 34.44 5.01
2081 9179 0.105778 GCATCTCTCCTGTAGGCACC 59.894 60.000 0.00 0.00 34.44 5.01
2082 9180 0.387202 CATCTCTCCTGTAGGCACCG 59.613 60.000 0.00 0.00 34.44 4.94
2083 9181 0.757188 ATCTCTCCTGTAGGCACCGG 60.757 60.000 0.00 0.00 34.44 5.28
2084 9182 1.682684 CTCTCCTGTAGGCACCGGT 60.683 63.158 0.00 0.00 31.32 5.28
2085 9183 1.949847 CTCTCCTGTAGGCACCGGTG 61.950 65.000 30.66 30.66 31.32 4.94
2097 9195 2.119671 CACCGGTGCTTCAGAAAAAC 57.880 50.000 24.02 0.00 0.00 2.43
2098 9196 1.676006 CACCGGTGCTTCAGAAAAACT 59.324 47.619 24.02 0.00 0.00 2.66
2099 9197 1.947456 ACCGGTGCTTCAGAAAAACTC 59.053 47.619 6.12 0.00 0.00 3.01
2100 9198 1.069906 CCGGTGCTTCAGAAAAACTCG 60.070 52.381 0.00 0.00 0.00 4.18
2101 9199 1.069906 CGGTGCTTCAGAAAAACTCGG 60.070 52.381 0.00 0.00 0.00 4.63
2102 9200 1.947456 GGTGCTTCAGAAAAACTCGGT 59.053 47.619 0.00 0.00 0.00 4.69
2103 9201 2.357952 GGTGCTTCAGAAAAACTCGGTT 59.642 45.455 0.00 0.00 0.00 4.44
2104 9202 3.181490 GGTGCTTCAGAAAAACTCGGTTT 60.181 43.478 0.00 0.00 37.34 3.27
2105 9203 4.035909 GGTGCTTCAGAAAAACTCGGTTTA 59.964 41.667 3.01 0.00 34.43 2.01
2106 9204 5.278315 GGTGCTTCAGAAAAACTCGGTTTAT 60.278 40.000 3.01 0.00 34.43 1.40
2107 9205 6.206498 GTGCTTCAGAAAAACTCGGTTTATT 58.794 36.000 3.01 1.51 34.43 1.40
2108 9206 6.695713 GTGCTTCAGAAAAACTCGGTTTATTT 59.304 34.615 3.01 0.00 34.43 1.40
2109 9207 7.222031 GTGCTTCAGAAAAACTCGGTTTATTTT 59.778 33.333 3.01 0.00 34.43 1.82
2110 9208 7.762159 TGCTTCAGAAAAACTCGGTTTATTTTT 59.238 29.630 3.01 0.00 38.03 1.94
2111 9209 8.266682 GCTTCAGAAAAACTCGGTTTATTTTTC 58.733 33.333 11.59 11.59 45.95 2.29
2117 9215 9.240159 GAAAAACTCGGTTTATTTTTCTAAGCA 57.760 29.630 12.05 0.00 43.86 3.91
2118 9216 8.570096 AAAACTCGGTTTATTTTTCTAAGCAC 57.430 30.769 3.01 0.00 34.43 4.40
2119 9217 6.250344 ACTCGGTTTATTTTTCTAAGCACC 57.750 37.500 0.00 0.00 0.00 5.01
2120 9218 6.002082 ACTCGGTTTATTTTTCTAAGCACCT 58.998 36.000 0.00 0.00 0.00 4.00
2121 9219 6.148976 ACTCGGTTTATTTTTCTAAGCACCTC 59.851 38.462 0.00 0.00 0.00 3.85
2122 9220 5.413523 TCGGTTTATTTTTCTAAGCACCTCC 59.586 40.000 0.00 0.00 0.00 4.30
2123 9221 5.392703 CGGTTTATTTTTCTAAGCACCTCCC 60.393 44.000 0.00 0.00 0.00 4.30
2124 9222 5.715279 GGTTTATTTTTCTAAGCACCTCCCT 59.285 40.000 0.00 0.00 0.00 4.20
2125 9223 6.888088 GGTTTATTTTTCTAAGCACCTCCCTA 59.112 38.462 0.00 0.00 0.00 3.53
2126 9224 7.395206 GGTTTATTTTTCTAAGCACCTCCCTAA 59.605 37.037 0.00 0.00 0.00 2.69
2127 9225 8.459635 GTTTATTTTTCTAAGCACCTCCCTAAG 58.540 37.037 0.00 0.00 0.00 2.18
2128 9226 3.629142 TTTCTAAGCACCTCCCTAAGC 57.371 47.619 0.00 0.00 0.00 3.09
2129 9227 2.247699 TCTAAGCACCTCCCTAAGCA 57.752 50.000 0.00 0.00 0.00 3.91
2130 9228 2.764269 TCTAAGCACCTCCCTAAGCAT 58.236 47.619 0.00 0.00 0.00 3.79
2131 9229 2.700897 TCTAAGCACCTCCCTAAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
2132 9230 1.589414 AAGCACCTCCCTAAGCATCT 58.411 50.000 0.00 0.00 0.00 2.90
2133 9231 1.127343 AGCACCTCCCTAAGCATCTC 58.873 55.000 0.00 0.00 0.00 2.75
2134 9232 0.107643 GCACCTCCCTAAGCATCTCC 59.892 60.000 0.00 0.00 0.00 3.71
2135 9233 0.761802 CACCTCCCTAAGCATCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
2136 9234 0.343372 ACCTCCCTAAGCATCTCCCA 59.657 55.000 0.00 0.00 0.00 4.37
2137 9235 1.061033 ACCTCCCTAAGCATCTCCCAT 60.061 52.381 0.00 0.00 0.00 4.00
2138 9236 2.061061 CCTCCCTAAGCATCTCCCATT 58.939 52.381 0.00 0.00 0.00 3.16
2139 9237 2.224719 CCTCCCTAAGCATCTCCCATTG 60.225 54.545 0.00 0.00 0.00 2.82
2140 9238 2.441001 CTCCCTAAGCATCTCCCATTGT 59.559 50.000 0.00 0.00 0.00 2.71
2141 9239 3.648067 CTCCCTAAGCATCTCCCATTGTA 59.352 47.826 0.00 0.00 0.00 2.41
2142 9240 3.391296 TCCCTAAGCATCTCCCATTGTAC 59.609 47.826 0.00 0.00 0.00 2.90
2143 9241 3.136443 CCCTAAGCATCTCCCATTGTACA 59.864 47.826 0.00 0.00 0.00 2.90
2144 9242 4.385199 CCCTAAGCATCTCCCATTGTACAA 60.385 45.833 11.41 11.41 0.00 2.41
2145 9243 4.818546 CCTAAGCATCTCCCATTGTACAAG 59.181 45.833 14.65 6.30 0.00 3.16
2146 9244 3.287867 AGCATCTCCCATTGTACAAGG 57.712 47.619 14.65 13.92 0.00 3.61
2147 9245 1.678101 GCATCTCCCATTGTACAAGGC 59.322 52.381 14.66 0.00 0.00 4.35
2148 9246 2.301346 CATCTCCCATTGTACAAGGCC 58.699 52.381 14.66 0.00 0.00 5.19
2149 9247 1.668826 TCTCCCATTGTACAAGGCCT 58.331 50.000 14.66 0.00 0.00 5.19
2150 9248 2.840511 TCTCCCATTGTACAAGGCCTA 58.159 47.619 14.66 1.57 0.00 3.93
2151 9249 3.186283 TCTCCCATTGTACAAGGCCTAA 58.814 45.455 14.66 0.00 0.00 2.69
2152 9250 3.199946 TCTCCCATTGTACAAGGCCTAAG 59.800 47.826 14.66 4.24 0.00 2.18
2204 9302 7.522073 GCCATCACAACAGAAAGAAAAGTATGA 60.522 37.037 0.00 0.00 0.00 2.15
2318 10109 8.752005 ACACTTGAATTTGTGCATATATAGGT 57.248 30.769 0.00 0.00 37.68 3.08
2319 10110 9.845740 ACACTTGAATTTGTGCATATATAGGTA 57.154 29.630 0.00 0.00 37.68 3.08
2329 10120 9.758651 TTGTGCATATATAGGTACTTACACTTG 57.241 33.333 15.11 0.00 41.75 3.16
2330 10121 9.138596 TGTGCATATATAGGTACTTACACTTGA 57.861 33.333 15.11 0.00 41.75 3.02
2331 10122 9.976511 GTGCATATATAGGTACTTACACTTGAA 57.023 33.333 8.18 0.00 41.75 2.69
2338 10129 6.313744 AGGTACTTACACTTGAATTTGTGC 57.686 37.500 0.00 0.00 34.00 4.57
2339 10130 5.825679 AGGTACTTACACTTGAATTTGTGCA 59.174 36.000 0.00 0.00 34.00 4.57
2340 10131 6.490040 AGGTACTTACACTTGAATTTGTGCAT 59.510 34.615 0.00 0.00 34.00 3.96
2341 10132 7.663905 AGGTACTTACACTTGAATTTGTGCATA 59.336 33.333 0.00 0.00 34.00 3.14
2342 10133 8.458843 GGTACTTACACTTGAATTTGTGCATAT 58.541 33.333 0.00 0.00 37.68 1.78
2460 10355 9.273016 ACCAATATATTCAGAGAAAATGGTACG 57.727 33.333 0.00 0.00 35.79 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.000486 AGGAAAGAAGAAGAAGGTAAAAATACG 58.000 33.333 0.00 0.00 0.00 3.06
318 365 8.095792 TCCATGCATTCAAGAAATGTTTGTAAT 58.904 29.630 0.00 0.00 45.55 1.89
1362 1576 1.966451 GGGCTTCTTGTCACACCGG 60.966 63.158 0.00 0.00 0.00 5.28
1555 1779 1.506686 GACGACGACGACGACTGTC 60.507 63.158 25.15 14.66 42.66 3.51
1962 9060 1.678101 GCATCTCCCATTGTACAAGGC 59.322 52.381 14.66 0.00 0.00 4.35
1963 9061 3.287867 AGCATCTCCCATTGTACAAGG 57.712 47.619 14.65 13.92 0.00 3.61
1964 9062 4.818546 CCTAAGCATCTCCCATTGTACAAG 59.181 45.833 14.65 6.30 0.00 3.16
1965 9063 4.385199 CCCTAAGCATCTCCCATTGTACAA 60.385 45.833 11.41 11.41 0.00 2.41
1966 9064 3.136443 CCCTAAGCATCTCCCATTGTACA 59.864 47.826 0.00 0.00 0.00 2.90
1967 9065 3.496870 CCCCTAAGCATCTCCCATTGTAC 60.497 52.174 0.00 0.00 0.00 2.90
1968 9066 2.711009 CCCCTAAGCATCTCCCATTGTA 59.289 50.000 0.00 0.00 0.00 2.41
1969 9067 1.496429 CCCCTAAGCATCTCCCATTGT 59.504 52.381 0.00 0.00 0.00 2.71
1970 9068 1.776667 TCCCCTAAGCATCTCCCATTG 59.223 52.381 0.00 0.00 0.00 2.82
1971 9069 2.061061 CTCCCCTAAGCATCTCCCATT 58.939 52.381 0.00 0.00 0.00 3.16
1972 9070 1.739750 CTCCCCTAAGCATCTCCCAT 58.260 55.000 0.00 0.00 0.00 4.00
1973 9071 0.400525 CCTCCCCTAAGCATCTCCCA 60.401 60.000 0.00 0.00 0.00 4.37
1974 9072 0.400670 ACCTCCCCTAAGCATCTCCC 60.401 60.000 0.00 0.00 0.00 4.30
1975 9073 0.761802 CACCTCCCCTAAGCATCTCC 59.238 60.000 0.00 0.00 0.00 3.71
1976 9074 1.501582 ACACCTCCCCTAAGCATCTC 58.498 55.000 0.00 0.00 0.00 2.75
1977 9075 1.972588 AACACCTCCCCTAAGCATCT 58.027 50.000 0.00 0.00 0.00 2.90
1978 9076 2.808906 AAACACCTCCCCTAAGCATC 57.191 50.000 0.00 0.00 0.00 3.91
1979 9077 3.456277 CTCTAAACACCTCCCCTAAGCAT 59.544 47.826 0.00 0.00 0.00 3.79
1980 9078 2.838202 CTCTAAACACCTCCCCTAAGCA 59.162 50.000 0.00 0.00 0.00 3.91
1981 9079 3.105283 TCTCTAAACACCTCCCCTAAGC 58.895 50.000 0.00 0.00 0.00 3.09
1982 9080 5.757099 TTTCTCTAAACACCTCCCCTAAG 57.243 43.478 0.00 0.00 0.00 2.18
1983 9081 7.817910 TTATTTCTCTAAACACCTCCCCTAA 57.182 36.000 0.00 0.00 0.00 2.69
1984 9082 7.311486 GGTTTATTTCTCTAAACACCTCCCCTA 60.311 40.741 8.47 0.00 41.36 3.53
1985 9083 6.482524 GTTTATTTCTCTAAACACCTCCCCT 58.517 40.000 2.68 0.00 40.01 4.79
1986 9084 5.651139 GGTTTATTTCTCTAAACACCTCCCC 59.349 44.000 8.47 0.00 41.36 4.81
1987 9085 6.243148 TGGTTTATTTCTCTAAACACCTCCC 58.757 40.000 8.47 0.00 41.36 4.30
1988 9086 6.374613 CCTGGTTTATTTCTCTAAACACCTCC 59.625 42.308 8.47 0.00 41.36 4.30
1989 9087 6.127980 GCCTGGTTTATTTCTCTAAACACCTC 60.128 42.308 8.47 0.00 41.36 3.85
1990 9088 5.710567 GCCTGGTTTATTTCTCTAAACACCT 59.289 40.000 8.47 0.00 41.36 4.00
1991 9089 5.710567 AGCCTGGTTTATTTCTCTAAACACC 59.289 40.000 8.47 0.00 41.36 4.16
1992 9090 6.819397 AGCCTGGTTTATTTCTCTAAACAC 57.181 37.500 8.47 0.88 41.36 3.32
1993 9091 6.433093 GGAAGCCTGGTTTATTTCTCTAAACA 59.567 38.462 0.00 0.00 41.36 2.83
1994 9092 6.659668 AGGAAGCCTGGTTTATTTCTCTAAAC 59.340 38.462 0.00 0.00 39.70 2.01
1995 9093 6.790319 AGGAAGCCTGGTTTATTTCTCTAAA 58.210 36.000 0.00 0.00 29.57 1.85
1996 9094 6.388619 AGGAAGCCTGGTTTATTTCTCTAA 57.611 37.500 0.00 0.00 29.57 2.10
1997 9095 6.388619 AAGGAAGCCTGGTTTATTTCTCTA 57.611 37.500 0.00 0.00 32.13 2.43
1998 9096 4.936685 AGGAAGCCTGGTTTATTTCTCT 57.063 40.909 0.00 0.00 29.57 3.10
1999 9097 7.089770 CTTAAGGAAGCCTGGTTTATTTCTC 57.910 40.000 0.00 0.00 32.13 2.87
2024 9122 1.375551 GGTACAAATAGGCACCGGTG 58.624 55.000 30.66 30.66 0.00 4.94
2025 9123 3.867549 GGTACAAATAGGCACCGGT 57.132 52.632 0.00 0.00 0.00 5.28
2028 9126 1.483415 TCTCCGGTACAAATAGGCACC 59.517 52.381 0.00 0.00 0.00 5.01
2029 9127 2.973694 TCTCCGGTACAAATAGGCAC 57.026 50.000 0.00 0.00 0.00 5.01
2030 9128 3.602483 GTTTCTCCGGTACAAATAGGCA 58.398 45.455 0.00 0.00 0.00 4.75
2031 9129 2.606272 CGTTTCTCCGGTACAAATAGGC 59.394 50.000 0.00 0.00 0.00 3.93
2032 9130 2.606272 GCGTTTCTCCGGTACAAATAGG 59.394 50.000 0.00 0.00 0.00 2.57
2033 9131 3.518590 AGCGTTTCTCCGGTACAAATAG 58.481 45.455 0.00 0.00 36.69 1.73
2034 9132 3.598019 AGCGTTTCTCCGGTACAAATA 57.402 42.857 0.00 0.00 36.69 1.40
2035 9133 2.467566 AGCGTTTCTCCGGTACAAAT 57.532 45.000 0.00 0.00 36.69 2.32
2036 9134 2.243602 AAGCGTTTCTCCGGTACAAA 57.756 45.000 0.00 0.00 37.62 2.83
2037 9135 3.059166 GTTAAGCGTTTCTCCGGTACAA 58.941 45.455 0.00 0.00 37.62 2.41
2038 9136 2.297033 AGTTAAGCGTTTCTCCGGTACA 59.703 45.455 0.00 0.00 37.62 2.90
2039 9137 2.951726 AGTTAAGCGTTTCTCCGGTAC 58.048 47.619 0.00 0.00 37.62 3.34
2040 9138 4.737054 CTTAGTTAAGCGTTTCTCCGGTA 58.263 43.478 0.00 0.00 37.62 4.02
2041 9139 3.582780 CTTAGTTAAGCGTTTCTCCGGT 58.417 45.455 0.00 0.00 40.82 5.28
2053 9151 6.737346 GCCTACAGGAGAGATGCTTAGTTAAG 60.737 46.154 0.00 0.00 37.39 1.85
2054 9152 5.069251 GCCTACAGGAGAGATGCTTAGTTAA 59.931 44.000 0.00 0.00 37.39 2.01
2055 9153 4.585162 GCCTACAGGAGAGATGCTTAGTTA 59.415 45.833 0.00 0.00 37.39 2.24
2056 9154 3.386402 GCCTACAGGAGAGATGCTTAGTT 59.614 47.826 0.00 0.00 37.39 2.24
2057 9155 2.962421 GCCTACAGGAGAGATGCTTAGT 59.038 50.000 0.00 0.00 37.39 2.24
2058 9156 2.961741 TGCCTACAGGAGAGATGCTTAG 59.038 50.000 0.00 0.00 37.39 2.18
2059 9157 2.695666 GTGCCTACAGGAGAGATGCTTA 59.304 50.000 0.00 0.00 37.39 3.09
2060 9158 1.484240 GTGCCTACAGGAGAGATGCTT 59.516 52.381 0.00 0.00 37.39 3.91
2061 9159 1.118838 GTGCCTACAGGAGAGATGCT 58.881 55.000 0.00 0.00 37.39 3.79
2062 9160 0.105778 GGTGCCTACAGGAGAGATGC 59.894 60.000 0.00 0.00 37.39 3.91
2063 9161 0.387202 CGGTGCCTACAGGAGAGATG 59.613 60.000 0.00 0.00 37.39 2.90
2064 9162 0.757188 CCGGTGCCTACAGGAGAGAT 60.757 60.000 0.00 0.00 43.89 2.75
2065 9163 1.379977 CCGGTGCCTACAGGAGAGA 60.380 63.158 0.00 0.00 43.89 3.10
2066 9164 1.682684 ACCGGTGCCTACAGGAGAG 60.683 63.158 6.12 0.00 43.89 3.20
2067 9165 1.982395 CACCGGTGCCTACAGGAGA 60.982 63.158 24.02 0.00 43.89 3.71
2068 9166 2.579201 CACCGGTGCCTACAGGAG 59.421 66.667 24.02 0.00 43.89 3.69
2078 9176 1.676006 AGTTTTTCTGAAGCACCGGTG 59.324 47.619 30.66 30.66 0.00 4.94
2079 9177 1.947456 GAGTTTTTCTGAAGCACCGGT 59.053 47.619 0.00 0.00 0.00 5.28
2080 9178 1.069906 CGAGTTTTTCTGAAGCACCGG 60.070 52.381 0.00 0.00 0.00 5.28
2081 9179 1.069906 CCGAGTTTTTCTGAAGCACCG 60.070 52.381 0.00 0.00 0.00 4.94
2082 9180 1.947456 ACCGAGTTTTTCTGAAGCACC 59.053 47.619 0.00 0.00 0.00 5.01
2083 9181 3.692791 AACCGAGTTTTTCTGAAGCAC 57.307 42.857 0.00 0.00 0.00 4.40
2084 9182 6.385649 AATAAACCGAGTTTTTCTGAAGCA 57.614 33.333 7.22 0.00 37.01 3.91
2085 9183 7.694388 AAAATAAACCGAGTTTTTCTGAAGC 57.306 32.000 7.22 0.00 37.01 3.86
2091 9189 9.240159 TGCTTAGAAAAATAAACCGAGTTTTTC 57.760 29.630 12.23 12.23 45.36 2.29
2092 9190 9.027129 GTGCTTAGAAAAATAAACCGAGTTTTT 57.973 29.630 7.22 0.00 37.01 1.94
2093 9191 7.650504 GGTGCTTAGAAAAATAAACCGAGTTTT 59.349 33.333 7.22 0.00 37.01 2.43
2094 9192 7.013942 AGGTGCTTAGAAAAATAAACCGAGTTT 59.986 33.333 7.11 7.11 39.24 2.66
2095 9193 6.489022 AGGTGCTTAGAAAAATAAACCGAGTT 59.511 34.615 0.00 0.00 0.00 3.01
2096 9194 6.002082 AGGTGCTTAGAAAAATAAACCGAGT 58.998 36.000 0.00 0.00 0.00 4.18
2097 9195 6.403309 GGAGGTGCTTAGAAAAATAAACCGAG 60.403 42.308 0.00 0.00 0.00 4.63
2098 9196 5.413523 GGAGGTGCTTAGAAAAATAAACCGA 59.586 40.000 0.00 0.00 0.00 4.69
2099 9197 5.392703 GGGAGGTGCTTAGAAAAATAAACCG 60.393 44.000 0.00 0.00 0.00 4.44
2100 9198 5.715279 AGGGAGGTGCTTAGAAAAATAAACC 59.285 40.000 0.00 0.00 0.00 3.27
2101 9199 6.835819 AGGGAGGTGCTTAGAAAAATAAAC 57.164 37.500 0.00 0.00 0.00 2.01
2102 9200 7.122204 GCTTAGGGAGGTGCTTAGAAAAATAAA 59.878 37.037 0.00 0.00 0.00 1.40
2103 9201 6.602009 GCTTAGGGAGGTGCTTAGAAAAATAA 59.398 38.462 0.00 0.00 0.00 1.40
2104 9202 6.120220 GCTTAGGGAGGTGCTTAGAAAAATA 58.880 40.000 0.00 0.00 0.00 1.40
2105 9203 4.950475 GCTTAGGGAGGTGCTTAGAAAAAT 59.050 41.667 0.00 0.00 0.00 1.82
2106 9204 4.202524 TGCTTAGGGAGGTGCTTAGAAAAA 60.203 41.667 0.00 0.00 0.00 1.94
2107 9205 3.329520 TGCTTAGGGAGGTGCTTAGAAAA 59.670 43.478 0.00 0.00 0.00 2.29
2108 9206 2.910319 TGCTTAGGGAGGTGCTTAGAAA 59.090 45.455 0.00 0.00 0.00 2.52
2109 9207 2.546899 TGCTTAGGGAGGTGCTTAGAA 58.453 47.619 0.00 0.00 0.00 2.10
2110 9208 2.247699 TGCTTAGGGAGGTGCTTAGA 57.752 50.000 0.00 0.00 0.00 2.10
2111 9209 2.703007 AGATGCTTAGGGAGGTGCTTAG 59.297 50.000 0.00 0.00 0.00 2.18
2112 9210 2.700897 GAGATGCTTAGGGAGGTGCTTA 59.299 50.000 0.00 0.00 0.00 3.09
2113 9211 1.488393 GAGATGCTTAGGGAGGTGCTT 59.512 52.381 0.00 0.00 0.00 3.91
2114 9212 1.127343 GAGATGCTTAGGGAGGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
2115 9213 0.107643 GGAGATGCTTAGGGAGGTGC 59.892 60.000 0.00 0.00 0.00 5.01
2116 9214 0.761802 GGGAGATGCTTAGGGAGGTG 59.238 60.000 0.00 0.00 0.00 4.00
2117 9215 0.343372 TGGGAGATGCTTAGGGAGGT 59.657 55.000 0.00 0.00 0.00 3.85
2118 9216 1.739750 ATGGGAGATGCTTAGGGAGG 58.260 55.000 0.00 0.00 0.00 4.30
2119 9217 2.441001 ACAATGGGAGATGCTTAGGGAG 59.559 50.000 0.00 0.00 0.00 4.30
2120 9218 2.492025 ACAATGGGAGATGCTTAGGGA 58.508 47.619 0.00 0.00 0.00 4.20
2121 9219 3.136443 TGTACAATGGGAGATGCTTAGGG 59.864 47.826 0.00 0.00 0.00 3.53
2122 9220 4.422073 TGTACAATGGGAGATGCTTAGG 57.578 45.455 0.00 0.00 0.00 2.69
2123 9221 4.818546 CCTTGTACAATGGGAGATGCTTAG 59.181 45.833 9.13 0.00 0.00 2.18
2124 9222 4.780815 CCTTGTACAATGGGAGATGCTTA 58.219 43.478 9.13 0.00 0.00 3.09
2125 9223 3.624777 CCTTGTACAATGGGAGATGCTT 58.375 45.455 9.13 0.00 0.00 3.91
2126 9224 2.684927 GCCTTGTACAATGGGAGATGCT 60.685 50.000 16.08 0.00 0.00 3.79
2127 9225 1.678101 GCCTTGTACAATGGGAGATGC 59.322 52.381 16.08 3.76 0.00 3.91
2128 9226 2.092212 AGGCCTTGTACAATGGGAGATG 60.092 50.000 16.08 0.00 0.00 2.90
2129 9227 2.208872 AGGCCTTGTACAATGGGAGAT 58.791 47.619 16.08 0.53 0.00 2.75
2130 9228 1.668826 AGGCCTTGTACAATGGGAGA 58.331 50.000 16.08 0.00 0.00 3.71
2131 9229 3.199946 TCTTAGGCCTTGTACAATGGGAG 59.800 47.826 12.58 6.16 0.00 4.30
2132 9230 3.186283 TCTTAGGCCTTGTACAATGGGA 58.814 45.455 12.58 6.88 0.00 4.37
2133 9231 3.545703 CTCTTAGGCCTTGTACAATGGG 58.454 50.000 12.58 14.91 0.00 4.00
2134 9232 2.945668 GCTCTTAGGCCTTGTACAATGG 59.054 50.000 12.58 13.26 0.00 3.16
2135 9233 3.609853 TGCTCTTAGGCCTTGTACAATG 58.390 45.455 12.58 7.68 0.00 2.82
2136 9234 3.519510 TCTGCTCTTAGGCCTTGTACAAT 59.480 43.478 12.58 0.00 0.00 2.71
2137 9235 2.903784 TCTGCTCTTAGGCCTTGTACAA 59.096 45.455 12.58 8.28 0.00 2.41
2138 9236 2.497675 CTCTGCTCTTAGGCCTTGTACA 59.502 50.000 12.58 2.45 0.00 2.90
2139 9237 2.740256 GCTCTGCTCTTAGGCCTTGTAC 60.740 54.545 12.58 0.00 0.00 2.90
2140 9238 1.482593 GCTCTGCTCTTAGGCCTTGTA 59.517 52.381 12.58 0.00 0.00 2.41
2141 9239 0.251634 GCTCTGCTCTTAGGCCTTGT 59.748 55.000 12.58 0.00 0.00 3.16
2142 9240 0.540923 AGCTCTGCTCTTAGGCCTTG 59.459 55.000 12.58 4.55 30.62 3.61
2143 9241 1.760029 GTAGCTCTGCTCTTAGGCCTT 59.240 52.381 12.58 0.00 40.44 4.35
2144 9242 1.063266 AGTAGCTCTGCTCTTAGGCCT 60.063 52.381 11.78 11.78 40.44 5.19
2145 9243 1.339929 GAGTAGCTCTGCTCTTAGGCC 59.660 57.143 0.00 0.00 40.44 5.19
2146 9244 2.793278 GAGTAGCTCTGCTCTTAGGC 57.207 55.000 7.59 0.00 40.44 3.93
2204 9302 1.077086 TGCAATGCTGTGGGTGGAT 59.923 52.632 6.82 0.00 0.00 3.41
2314 10105 6.993308 TGCACAAATTCAAGTGTAAGTACCTA 59.007 34.615 7.27 0.00 38.02 3.08
2315 10106 5.825679 TGCACAAATTCAAGTGTAAGTACCT 59.174 36.000 7.27 0.00 38.02 3.08
2316 10107 6.067263 TGCACAAATTCAAGTGTAAGTACC 57.933 37.500 7.27 0.00 38.02 3.34
2322 10113 9.845740 ACCTATATATGCACAAATTCAAGTGTA 57.154 29.630 0.00 3.99 38.02 2.90
2323 10114 8.752005 ACCTATATATGCACAAATTCAAGTGT 57.248 30.769 0.00 0.00 38.02 3.55
2333 10124 9.758651 CAAGTGTAAGTACCTATATATGCACAA 57.241 33.333 0.00 0.00 0.00 3.33
2334 10125 9.138596 TCAAGTGTAAGTACCTATATATGCACA 57.861 33.333 0.00 0.00 0.00 4.57
2335 10126 9.976511 TTCAAGTGTAAGTACCTATATATGCAC 57.023 33.333 0.00 0.00 0.00 4.57
2414 10309 6.024552 TGGTGTCAAAATCATAAGAAAGCC 57.975 37.500 0.00 0.00 0.00 4.35
2460 10355 2.503920 ACGTGTCCTGTGTTGTAGTC 57.496 50.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.