Multiple sequence alignment - TraesCS2D01G258000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G258000 chr2D 100.000 4719 0 0 1 4719 314081611 314076893 0.000000e+00 8715.0
1 TraesCS2D01G258000 chr2D 89.152 507 37 5 2163 2662 314047480 314046985 2.410000e-172 616.0
2 TraesCS2D01G258000 chr2D 76.230 366 52 23 4 363 56533233 56533569 1.360000e-35 161.0
3 TraesCS2D01G258000 chr2D 77.091 275 43 17 205 465 628192995 628193263 1.770000e-29 141.0
4 TraesCS2D01G258000 chr2B 93.360 3976 175 38 19 3963 381920075 381916158 0.000000e+00 5797.0
5 TraesCS2D01G258000 chr2B 83.651 367 35 14 4057 4403 381916124 381915763 5.890000e-84 322.0
6 TraesCS2D01G258000 chr2A 94.692 3052 104 20 938 3970 422095666 422098678 0.000000e+00 4686.0
7 TraesCS2D01G258000 chr2A 93.455 382 17 5 4216 4596 422099220 422099594 1.150000e-155 560.0
8 TraesCS2D01G258000 chr2A 87.264 212 9 4 4013 4221 422098815 422099011 4.750000e-55 226.0
9 TraesCS2D01G258000 chr2A 78.614 332 52 13 131 446 35970666 35970338 8.010000e-48 202.0
10 TraesCS2D01G258000 chr2A 90.833 120 7 4 4601 4719 446607924 446607808 1.760000e-34 158.0
11 TraesCS2D01G258000 chr1A 78.971 447 51 26 168 604 456447241 456446828 1.010000e-66 265.0
12 TraesCS2D01G258000 chr6B 78.652 356 49 22 197 544 588114675 588114339 1.330000e-50 211.0
13 TraesCS2D01G258000 chr6B 73.830 470 70 33 120 544 46933274 46932813 2.290000e-28 137.0
14 TraesCS2D01G258000 chr7A 79.279 333 35 22 342 657 678176992 678177307 8.010000e-48 202.0
15 TraesCS2D01G258000 chr7A 76.684 386 70 19 108 484 566005673 566006047 3.730000e-46 196.0
16 TraesCS2D01G258000 chr7A 78.313 249 44 10 298 538 406090133 406090379 8.180000e-33 152.0
17 TraesCS2D01G258000 chr7A 77.510 249 46 10 298 538 406067429 406067675 1.770000e-29 141.0
18 TraesCS2D01G258000 chr7A 82.394 142 18 6 571 708 230080678 230080816 2.980000e-22 117.0
19 TraesCS2D01G258000 chr7A 77.419 186 24 11 471 654 566005601 566005770 1.400000e-15 95.3
20 TraesCS2D01G258000 chr4B 87.117 163 15 6 215 373 561586753 561586913 3.750000e-41 180.0
21 TraesCS2D01G258000 chr7D 93.103 116 6 2 4605 4719 20036062 20035948 8.120000e-38 169.0
22 TraesCS2D01G258000 chr7D 77.895 285 46 16 191 465 58890444 58890721 1.360000e-35 161.0
23 TraesCS2D01G258000 chr7D 83.846 130 16 4 578 705 577256501 577256375 8.300000e-23 119.0
24 TraesCS2D01G258000 chr7D 77.215 158 15 13 479 617 471074923 471075078 6.550000e-09 73.1
25 TraesCS2D01G258000 chr7D 100.000 28 0 0 4004 4031 633253539 633253566 9.000000e-03 52.8
26 TraesCS2D01G258000 chr3A 79.915 234 35 10 150 378 686840994 686840768 1.360000e-35 161.0
27 TraesCS2D01G258000 chr3B 91.743 109 9 0 4609 4717 593567183 593567075 8.180000e-33 152.0
28 TraesCS2D01G258000 chr1B 79.381 194 23 11 277 465 535360925 535360744 2.310000e-23 121.0
29 TraesCS2D01G258000 chr5A 97.500 40 1 0 505 544 535480766 535480727 8.470000e-08 69.4
30 TraesCS2D01G258000 chr3D 84.615 65 5 5 477 538 133817067 133817129 5.100000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G258000 chr2D 314076893 314081611 4718 True 8715.0 8715 100.000000 1 4719 1 chr2D.!!$R2 4718
1 TraesCS2D01G258000 chr2B 381915763 381920075 4312 True 3059.5 5797 88.505500 19 4403 2 chr2B.!!$R1 4384
2 TraesCS2D01G258000 chr2A 422095666 422099594 3928 False 1824.0 4686 91.803667 938 4596 3 chr2A.!!$F1 3658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 962 1.152777 CCAAGCAGACCAACACCCA 60.153 57.895 0.00 0.0 0.00 4.51 F
1053 1065 1.065418 CCGGCTCCAAACCTTATGTCT 60.065 52.381 0.00 0.0 0.00 3.41 F
2059 2087 1.331214 AAGGGTGTTGCACATTCCTG 58.669 50.000 11.65 0.0 35.71 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2831 2860 1.304134 TGTAGCCTCCGTCTCTGCA 60.304 57.895 0.0 0.0 0.0 4.41 R
3005 3038 1.663739 GTGCCACGAGTCACCAGTA 59.336 57.895 0.0 0.0 0.0 2.74 R
3985 4021 0.253044 TCAAGCTTTCCCTCCATCCG 59.747 55.000 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 7.485418 TGTTTAGCATTTTTCGAGTACAAGA 57.515 32.000 0.00 0.00 0.00 3.02
123 124 8.094798 TGTTTAGCATTTTTCGAGTACAAGAT 57.905 30.769 0.00 0.00 0.00 2.40
124 125 8.564574 TGTTTAGCATTTTTCGAGTACAAGATT 58.435 29.630 0.00 0.00 0.00 2.40
128 129 8.094798 AGCATTTTTCGAGTACAAGATTAACA 57.905 30.769 0.00 0.00 0.00 2.41
210 212 8.545420 GCTTGATTATCCTTTTGCAAATACATG 58.455 33.333 13.65 7.87 0.00 3.21
252 254 7.377766 ACATGGTCAACACATTTCTATACAC 57.622 36.000 0.00 0.00 0.00 2.90
253 255 6.939730 ACATGGTCAACACATTTCTATACACA 59.060 34.615 0.00 0.00 0.00 3.72
254 256 7.611467 ACATGGTCAACACATTTCTATACACAT 59.389 33.333 0.00 0.00 0.00 3.21
258 260 9.769093 GGTCAACACATTTCTATACACATTTAC 57.231 33.333 0.00 0.00 0.00 2.01
273 275 7.656707 ACACATTTACCATTTTCAAATGCTC 57.343 32.000 6.73 0.00 43.38 4.26
274 276 6.365789 ACACATTTACCATTTTCAAATGCTCG 59.634 34.615 6.73 0.00 43.38 5.03
275 277 6.585702 CACATTTACCATTTTCAAATGCTCGA 59.414 34.615 6.73 0.00 43.38 4.04
277 279 7.818930 ACATTTACCATTTTCAAATGCTCGATT 59.181 29.630 6.73 0.00 43.38 3.34
280 282 8.682128 TTACCATTTTCAAATGCTCGATTAAC 57.318 30.769 6.73 0.00 43.38 2.01
281 283 6.686630 ACCATTTTCAAATGCTCGATTAACA 58.313 32.000 6.73 0.00 43.38 2.41
282 284 7.322664 ACCATTTTCAAATGCTCGATTAACAT 58.677 30.769 6.73 0.00 43.38 2.71
351 353 8.282455 TGTCTGTACAGGTTTAACATTTTTCA 57.718 30.769 22.48 0.00 0.00 2.69
375 377 9.504708 TCAAATGCCTGATTAACATTTTTCAAT 57.495 25.926 0.00 0.00 40.94 2.57
768 771 8.791327 TGTATGCATGAGAAACATTTTCTCTA 57.209 30.769 22.81 13.40 43.91 2.43
769 772 8.886719 TGTATGCATGAGAAACATTTTCTCTAG 58.113 33.333 22.81 17.34 43.91 2.43
806 811 7.489574 TTTCAAATGCCTGGTTAACATTTTC 57.510 32.000 8.10 0.00 40.94 2.29
955 962 1.152777 CCAAGCAGACCAACACCCA 60.153 57.895 0.00 0.00 0.00 4.51
964 971 2.238144 AGACCAACACCCATCATCTCTG 59.762 50.000 0.00 0.00 0.00 3.35
965 972 1.988107 ACCAACACCCATCATCTCTGT 59.012 47.619 0.00 0.00 0.00 3.41
966 973 3.181329 ACCAACACCCATCATCTCTGTA 58.819 45.455 0.00 0.00 0.00 2.74
968 975 3.452264 CCAACACCCATCATCTCTGTAGA 59.548 47.826 0.00 0.00 35.80 2.59
970 977 5.491070 CAACACCCATCATCTCTGTAGAAA 58.509 41.667 0.00 0.00 34.73 2.52
972 979 5.738909 ACACCCATCATCTCTGTAGAAAAG 58.261 41.667 0.00 0.00 34.73 2.27
982 994 6.347859 TCTCTGTAGAAAAGAAGAACCCTC 57.652 41.667 0.00 0.00 0.00 4.30
1053 1065 1.065418 CCGGCTCCAAACCTTATGTCT 60.065 52.381 0.00 0.00 0.00 3.41
1440 1462 2.281484 TGGAGTTCACTTGCCGCC 60.281 61.111 0.00 0.00 0.00 6.13
1497 1519 6.093219 ACATCTGATGTTACTGATGCAACTTC 59.907 38.462 17.24 0.00 44.34 3.01
1555 1577 2.761767 CCATGTTCATTCTGAATGGCCA 59.238 45.455 25.52 21.58 38.79 5.36
1630 1652 6.037172 GTGGCACAAACTTCTATATACAGGTG 59.963 42.308 13.86 0.00 44.16 4.00
1646 1668 3.815401 ACAGGTGCATAGTTCAACACTTC 59.185 43.478 0.00 0.00 36.88 3.01
1744 1772 4.021544 TCTGATTTACATTTTTGCGGGCTT 60.022 37.500 0.00 0.00 0.00 4.35
2059 2087 1.331214 AAGGGTGTTGCACATTCCTG 58.669 50.000 11.65 0.00 35.71 3.86
2254 2282 1.907936 AGAAGCTGCAGAAGTGAGGAT 59.092 47.619 20.43 0.00 0.00 3.24
2424 2453 2.203771 CCGGCCTACTAGCTCCAGG 61.204 68.421 0.00 0.00 0.00 4.45
2802 2831 7.190920 ACATTTTTAAGACGGTCTGAGAAAG 57.809 36.000 12.12 8.41 0.00 2.62
2831 2860 4.709397 AGTACTAGACTGCAAATCTCTGCT 59.291 41.667 3.45 0.00 43.07 4.24
2892 2921 3.429085 GTGGAATTTGCATCACATCGAC 58.571 45.455 0.00 0.00 0.00 4.20
3143 3176 1.072965 AGGTTGGCCTCAAGAGAGTTG 59.927 52.381 3.32 0.00 42.67 3.16
3214 3247 1.338674 TGAGGTGGTTCTGGTTATGCG 60.339 52.381 0.00 0.00 0.00 4.73
3242 3275 7.671819 TGGTTGTCCTATGATAATTGGTTGAAA 59.328 33.333 0.00 0.00 34.23 2.69
3271 3304 2.699846 TGCTTGCCTTTTGTCATTTCCT 59.300 40.909 0.00 0.00 0.00 3.36
3319 3352 3.055819 TGGATCTGACAAGCTTCTACCAC 60.056 47.826 0.00 0.00 0.00 4.16
3372 3405 2.670148 GGTCCTTCGAGGGGCACAT 61.670 63.158 20.75 0.00 35.59 3.21
3456 3489 7.430441 GGAAGAGTAAGATCAAGAGTACATCC 58.570 42.308 0.00 0.00 0.00 3.51
3487 3520 7.564793 AGCAGAAGTATAACCATGTGAACATA 58.435 34.615 0.00 0.00 34.26 2.29
3646 3679 2.939103 ACTTCATATCGCAGCAAACTCC 59.061 45.455 0.00 0.00 0.00 3.85
3938 3974 3.314357 GTCCAGACGGTTTTATAATGCCC 59.686 47.826 0.00 0.00 0.00 5.36
3966 4002 5.235616 TCGGCTTAAATTTGGCTTATACTCG 59.764 40.000 14.50 9.50 0.00 4.18
3970 4006 6.017852 GCTTAAATTTGGCTTATACTCGCTCT 60.018 38.462 0.00 0.00 0.00 4.09
3973 4009 3.438297 TTGGCTTATACTCGCTCTGTC 57.562 47.619 0.00 0.00 0.00 3.51
3975 4011 1.335142 GGCTTATACTCGCTCTGTCCG 60.335 57.143 0.00 0.00 0.00 4.79
3976 4012 1.602851 GCTTATACTCGCTCTGTCCGA 59.397 52.381 0.00 0.00 0.00 4.55
3978 4014 3.850374 GCTTATACTCGCTCTGTCCGAAG 60.850 52.174 0.00 0.00 33.92 3.79
3979 4015 0.382515 ATACTCGCTCTGTCCGAAGC 59.617 55.000 0.00 0.00 33.92 3.86
3981 4017 1.214062 CTCGCTCTGTCCGAAGCTT 59.786 57.895 0.00 0.00 33.92 3.74
3985 4021 1.136224 CGCTCTGTCCGAAGCTTTTTC 60.136 52.381 0.00 0.00 0.00 2.29
3986 4022 1.136224 GCTCTGTCCGAAGCTTTTTCG 60.136 52.381 0.00 0.00 41.21 3.46
3993 4029 2.813779 CGAAGCTTTTTCGGATGGAG 57.186 50.000 0.00 0.00 38.19 3.86
3995 4031 1.745653 GAAGCTTTTTCGGATGGAGGG 59.254 52.381 0.00 0.00 0.00 4.30
3996 4032 0.991920 AGCTTTTTCGGATGGAGGGA 59.008 50.000 0.00 0.00 0.00 4.20
3998 4034 2.167662 GCTTTTTCGGATGGAGGGAAA 58.832 47.619 0.00 0.00 0.00 3.13
3999 4035 2.164422 GCTTTTTCGGATGGAGGGAAAG 59.836 50.000 0.00 0.00 31.94 2.62
4000 4036 1.834188 TTTTCGGATGGAGGGAAAGC 58.166 50.000 0.00 0.00 31.94 3.51
4001 4037 0.991920 TTTCGGATGGAGGGAAAGCT 59.008 50.000 0.00 0.00 0.00 3.74
4002 4038 0.991920 TTCGGATGGAGGGAAAGCTT 59.008 50.000 0.00 0.00 0.00 3.74
4003 4039 0.253044 TCGGATGGAGGGAAAGCTTG 59.747 55.000 0.00 0.00 0.00 4.01
4005 4041 1.756430 GGATGGAGGGAAAGCTTGAC 58.244 55.000 0.00 0.00 0.00 3.18
4008 4044 0.321671 TGGAGGGAAAGCTTGACGAG 59.678 55.000 0.00 0.00 0.00 4.18
4021 4152 0.942410 TGACGAGCTTTTTCGGACGG 60.942 55.000 0.00 0.00 44.57 4.79
4044 4176 4.871822 AGGGAGTATTAGCAAAAAGGCAT 58.128 39.130 0.00 0.00 35.83 4.40
4048 4180 6.978659 GGGAGTATTAGCAAAAAGGCATTTAC 59.021 38.462 0.00 0.00 35.83 2.01
4109 4250 4.458989 GTGACAATATCCACTCAAAAGCCA 59.541 41.667 0.00 0.00 0.00 4.75
4132 4273 3.904136 AGCCAAAGAGTCAAAATCACG 57.096 42.857 0.00 0.00 0.00 4.35
4323 4696 1.201880 GAGGACGTGTAAGAGGGTGAC 59.798 57.143 0.00 0.00 0.00 3.67
4368 4741 3.815962 TGTGGTAGAGCGCAACAATAAAA 59.184 39.130 11.47 0.00 0.00 1.52
4430 4803 9.023962 TGCACCATTGTTCTCTATTTTTCTTAT 57.976 29.630 0.00 0.00 0.00 1.73
4457 4830 9.916397 GAGATAGGAAAAATTAACATACACACG 57.084 33.333 0.00 0.00 0.00 4.49
4458 4831 8.395633 AGATAGGAAAAATTAACATACACACGC 58.604 33.333 0.00 0.00 0.00 5.34
4459 4832 6.320494 AGGAAAAATTAACATACACACGCA 57.680 33.333 0.00 0.00 0.00 5.24
4460 4833 6.146898 AGGAAAAATTAACATACACACGCAC 58.853 36.000 0.00 0.00 0.00 5.34
4462 4835 6.129300 GGAAAAATTAACATACACACGCACAC 60.129 38.462 0.00 0.00 0.00 3.82
4463 4836 5.425577 AAATTAACATACACACGCACACA 57.574 34.783 0.00 0.00 0.00 3.72
4464 4837 5.621197 AATTAACATACACACGCACACAT 57.379 34.783 0.00 0.00 0.00 3.21
4465 4838 5.621197 ATTAACATACACACGCACACATT 57.379 34.783 0.00 0.00 0.00 2.71
4466 4839 2.967459 ACATACACACGCACACATTG 57.033 45.000 0.00 0.00 0.00 2.82
4467 4840 1.535028 ACATACACACGCACACATTGG 59.465 47.619 0.00 0.00 0.00 3.16
4492 4865 0.378962 TGTTGAAAGCCAAACGACCG 59.621 50.000 0.00 0.00 36.36 4.79
4510 4883 2.704065 ACCGGAATATAAGTCCACCAGG 59.296 50.000 9.46 0.00 34.56 4.45
4529 4902 1.227383 GTATTCCCAGCCCACCAGG 59.773 63.158 0.00 0.00 39.47 4.45
4550 4923 5.045869 CAGGGTTCATTCTAGGTTTCCACTA 60.046 44.000 0.00 0.00 0.00 2.74
4553 4926 5.642491 GGTTCATTCTAGGTTTCCACTACAC 59.358 44.000 0.00 0.00 0.00 2.90
4574 4947 1.962100 GGGTCAGGTATAGGAGTTCCG 59.038 57.143 0.00 0.00 42.08 4.30
4581 4954 2.228343 GGTATAGGAGTTCCGTCATCCG 59.772 54.545 0.00 0.00 42.08 4.18
4585 4958 1.141234 GAGTTCCGTCATCCGACCC 59.859 63.158 0.00 0.00 39.11 4.46
4596 4969 2.698797 TCATCCGACCCATTCTAGGTTC 59.301 50.000 0.00 0.00 37.88 3.62
4597 4970 2.544844 TCCGACCCATTCTAGGTTCT 57.455 50.000 0.00 0.00 37.88 3.01
4598 4971 2.385803 TCCGACCCATTCTAGGTTCTC 58.614 52.381 0.00 0.00 37.88 2.87
4599 4972 1.413077 CCGACCCATTCTAGGTTCTCC 59.587 57.143 0.00 0.00 37.88 3.71
4600 4973 1.413077 CGACCCATTCTAGGTTCTCCC 59.587 57.143 0.00 0.00 37.88 4.30
4601 4974 1.769465 GACCCATTCTAGGTTCTCCCC 59.231 57.143 0.00 0.00 37.88 4.81
4602 4975 1.082194 ACCCATTCTAGGTTCTCCCCA 59.918 52.381 0.00 0.00 32.05 4.96
4603 4976 1.490910 CCCATTCTAGGTTCTCCCCAC 59.509 57.143 0.00 0.00 0.00 4.61
4604 4977 1.490910 CCATTCTAGGTTCTCCCCACC 59.509 57.143 0.00 0.00 34.06 4.61
4605 4978 2.482494 CATTCTAGGTTCTCCCCACCT 58.518 52.381 0.00 0.00 46.95 4.00
4606 4979 2.735259 TTCTAGGTTCTCCCCACCTT 57.265 50.000 0.00 0.00 42.45 3.50
4607 4980 2.249309 TCTAGGTTCTCCCCACCTTC 57.751 55.000 0.00 0.00 42.45 3.46
4608 4981 1.722851 TCTAGGTTCTCCCCACCTTCT 59.277 52.381 0.00 0.00 42.45 2.85
4609 4982 2.113777 TCTAGGTTCTCCCCACCTTCTT 59.886 50.000 0.00 0.00 42.45 2.52
4610 4983 1.834540 AGGTTCTCCCCACCTTCTTT 58.165 50.000 0.00 0.00 42.45 2.52
4611 4984 2.144450 AGGTTCTCCCCACCTTCTTTT 58.856 47.619 0.00 0.00 42.45 2.27
4612 4985 2.518407 AGGTTCTCCCCACCTTCTTTTT 59.482 45.455 0.00 0.00 42.45 1.94
4613 4986 3.725267 AGGTTCTCCCCACCTTCTTTTTA 59.275 43.478 0.00 0.00 42.45 1.52
4614 4987 4.079970 GGTTCTCCCCACCTTCTTTTTAG 58.920 47.826 0.00 0.00 0.00 1.85
4615 4988 4.079970 GTTCTCCCCACCTTCTTTTTAGG 58.920 47.826 0.00 0.00 38.79 2.69
4616 4989 2.647802 TCTCCCCACCTTCTTTTTAGGG 59.352 50.000 0.00 0.00 37.09 3.53
4618 4991 2.992847 CCCACCTTCTTTTTAGGGGT 57.007 50.000 0.00 0.00 34.17 4.95
4619 4992 2.525368 CCCACCTTCTTTTTAGGGGTG 58.475 52.381 0.00 0.00 44.77 4.61
4642 5015 8.065557 GTGAAACCAAGCTTTATTCAGAAAAG 57.934 34.615 15.12 0.00 37.08 2.27
4643 5016 7.169813 GTGAAACCAAGCTTTATTCAGAAAAGG 59.830 37.037 15.12 4.51 35.04 3.11
4644 5017 5.139435 ACCAAGCTTTATTCAGAAAAGGC 57.861 39.130 0.00 0.00 35.04 4.35
4645 5018 4.021104 ACCAAGCTTTATTCAGAAAAGGCC 60.021 41.667 0.00 0.00 35.04 5.19
4646 5019 4.021192 CCAAGCTTTATTCAGAAAAGGCCA 60.021 41.667 5.01 0.00 35.04 5.36
4647 5020 4.790765 AGCTTTATTCAGAAAAGGCCAC 57.209 40.909 5.01 0.00 35.04 5.01
4648 5021 4.151883 AGCTTTATTCAGAAAAGGCCACA 58.848 39.130 5.01 0.00 35.04 4.17
4649 5022 4.219288 AGCTTTATTCAGAAAAGGCCACAG 59.781 41.667 5.01 0.00 35.04 3.66
4650 5023 4.021981 GCTTTATTCAGAAAAGGCCACAGT 60.022 41.667 5.01 0.00 35.04 3.55
4651 5024 5.703876 CTTTATTCAGAAAAGGCCACAGTC 58.296 41.667 5.01 0.00 31.61 3.51
4652 5025 3.515602 ATTCAGAAAAGGCCACAGTCT 57.484 42.857 5.01 0.00 0.00 3.24
4653 5026 2.260844 TCAGAAAAGGCCACAGTCTG 57.739 50.000 5.01 12.25 37.62 3.51
4654 5027 1.490490 TCAGAAAAGGCCACAGTCTGT 59.510 47.619 19.26 0.00 37.55 3.41
4665 5038 2.814269 CACAGTCTGTGGGATACATCG 58.186 52.381 23.09 0.00 44.27 3.84
4666 5039 1.137086 ACAGTCTGTGGGATACATCGC 59.863 52.381 4.21 0.00 38.92 4.58
4667 5040 1.410517 CAGTCTGTGGGATACATCGCT 59.589 52.381 7.66 0.00 38.92 4.93
4668 5041 1.410517 AGTCTGTGGGATACATCGCTG 59.589 52.381 7.66 0.00 38.92 5.18
4669 5042 0.752658 TCTGTGGGATACATCGCTGG 59.247 55.000 7.66 0.00 38.92 4.85
4670 5043 0.465705 CTGTGGGATACATCGCTGGT 59.534 55.000 7.66 0.00 38.92 4.00
4671 5044 0.464036 TGTGGGATACATCGCTGGTC 59.536 55.000 7.66 0.00 40.09 4.02
4672 5045 0.597637 GTGGGATACATCGCTGGTCG 60.598 60.000 7.66 0.00 40.09 4.79
4673 5046 1.040893 TGGGATACATCGCTGGTCGT 61.041 55.000 7.66 0.00 40.09 4.34
4674 5047 0.597637 GGGATACATCGCTGGTCGTG 60.598 60.000 0.00 0.00 37.73 4.35
4675 5048 0.597637 GGATACATCGCTGGTCGTGG 60.598 60.000 0.00 0.00 39.67 4.94
4676 5049 0.597637 GATACATCGCTGGTCGTGGG 60.598 60.000 0.00 0.00 39.67 4.61
4677 5050 1.040893 ATACATCGCTGGTCGTGGGA 61.041 55.000 0.00 0.00 39.67 4.37
4678 5051 1.040893 TACATCGCTGGTCGTGGGAT 61.041 55.000 0.00 0.00 39.67 3.85
4679 5052 1.153369 CATCGCTGGTCGTGGGATT 60.153 57.895 0.00 0.00 39.67 3.01
4680 5053 1.153369 ATCGCTGGTCGTGGGATTG 60.153 57.895 0.00 0.00 39.67 2.67
4681 5054 2.593468 ATCGCTGGTCGTGGGATTGG 62.593 60.000 0.00 0.00 39.67 3.16
4682 5055 3.134127 GCTGGTCGTGGGATTGGC 61.134 66.667 0.00 0.00 0.00 4.52
4683 5056 2.438434 CTGGTCGTGGGATTGGCC 60.438 66.667 0.00 0.00 0.00 5.36
4684 5057 4.402528 TGGTCGTGGGATTGGCCG 62.403 66.667 0.00 0.00 37.63 6.13
4685 5058 4.090588 GGTCGTGGGATTGGCCGA 62.091 66.667 0.00 0.00 37.63 5.54
4686 5059 2.046700 GTCGTGGGATTGGCCGAA 60.047 61.111 0.00 0.00 37.63 4.30
4687 5060 2.046700 TCGTGGGATTGGCCGAAC 60.047 61.111 0.00 0.00 37.63 3.95
4688 5061 3.131478 CGTGGGATTGGCCGAACC 61.131 66.667 10.96 10.96 37.63 3.62
4704 5077 4.521075 CCACACATGGCGTCCTAG 57.479 61.111 0.00 0.00 39.82 3.02
4705 5078 1.897423 CCACACATGGCGTCCTAGA 59.103 57.895 0.00 0.00 39.82 2.43
4706 5079 0.460284 CCACACATGGCGTCCTAGAC 60.460 60.000 0.00 0.00 39.82 2.59
4707 5080 0.460284 CACACATGGCGTCCTAGACC 60.460 60.000 0.00 0.00 0.00 3.85
4708 5081 1.144057 CACATGGCGTCCTAGACCC 59.856 63.158 0.00 0.00 0.00 4.46
4709 5082 1.305802 ACATGGCGTCCTAGACCCA 60.306 57.895 0.00 7.20 37.32 4.51
4710 5083 0.907704 ACATGGCGTCCTAGACCCAA 60.908 55.000 0.00 0.00 36.82 4.12
4711 5084 0.251916 CATGGCGTCCTAGACCCAAA 59.748 55.000 8.40 0.00 36.82 3.28
4712 5085 0.541863 ATGGCGTCCTAGACCCAAAG 59.458 55.000 8.40 0.00 36.82 2.77
4713 5086 0.543410 TGGCGTCCTAGACCCAAAGA 60.543 55.000 0.00 0.00 32.75 2.52
4714 5087 0.611714 GGCGTCCTAGACCCAAAGAA 59.388 55.000 0.00 0.00 0.00 2.52
4715 5088 1.002773 GGCGTCCTAGACCCAAAGAAA 59.997 52.381 0.00 0.00 0.00 2.52
4716 5089 2.551504 GGCGTCCTAGACCCAAAGAAAA 60.552 50.000 0.00 0.00 0.00 2.29
4717 5090 3.344515 GCGTCCTAGACCCAAAGAAAAT 58.655 45.455 0.00 0.00 0.00 1.82
4718 5091 3.127030 GCGTCCTAGACCCAAAGAAAATG 59.873 47.826 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 7.485418 TCTTGTACTCGAAAAATGCTAAACA 57.515 32.000 0.00 0.00 0.00 2.83
227 229 8.097662 TGTGTATAGAAATGTGTTGACCATGTA 58.902 33.333 0.00 0.00 0.00 2.29
258 260 7.760131 ATGTTAATCGAGCATTTGAAAATGG 57.240 32.000 15.60 2.12 44.54 3.16
313 315 5.582269 CCTGTACAGACAAATAGTGACCATG 59.418 44.000 24.68 0.00 34.35 3.66
316 318 5.148651 ACCTGTACAGACAAATAGTGACC 57.851 43.478 24.68 0.00 34.35 4.02
327 329 9.575783 TTTGAAAAATGTTAAACCTGTACAGAC 57.424 29.630 24.68 13.90 0.00 3.51
331 333 8.279800 GGCATTTGAAAAATGTTAAACCTGTAC 58.720 33.333 12.82 0.00 0.00 2.90
609 611 9.719279 CAAGCATTTGAAAAATGTTAAATGTGT 57.281 25.926 12.82 0.00 40.70 3.72
610 612 9.932699 TCAAGCATTTGAAAAATGTTAAATGTG 57.067 25.926 12.82 4.10 40.26 3.21
768 771 9.268268 CAGGCATTTGAAAAATATTATGCATCT 57.732 29.630 16.51 6.37 39.96 2.90
769 772 8.500773 CCAGGCATTTGAAAAATATTATGCATC 58.499 33.333 16.51 4.67 39.96 3.91
903 910 1.075659 GGAAGCCACAGCCTCCTTT 59.924 57.895 0.00 0.00 44.99 3.11
904 911 2.759795 GGAAGCCACAGCCTCCTT 59.240 61.111 0.00 0.00 44.99 3.36
936 943 2.564721 GGGTGTTGGTCTGCTTGGC 61.565 63.158 0.00 0.00 0.00 4.52
945 952 1.988107 ACAGAGATGATGGGTGTTGGT 59.012 47.619 0.00 0.00 0.00 3.67
947 954 4.743057 TCTACAGAGATGATGGGTGTTG 57.257 45.455 0.00 0.00 0.00 3.33
955 962 7.181845 AGGGTTCTTCTTTTCTACAGAGATGAT 59.818 37.037 0.00 0.00 0.00 2.45
964 971 9.727859 AGATTTTAGAGGGTTCTTCTTTTCTAC 57.272 33.333 0.00 0.00 34.79 2.59
965 972 9.726438 CAGATTTTAGAGGGTTCTTCTTTTCTA 57.274 33.333 0.00 0.00 34.79 2.10
966 973 7.175816 GCAGATTTTAGAGGGTTCTTCTTTTCT 59.824 37.037 0.00 0.00 34.79 2.52
968 975 6.209589 GGCAGATTTTAGAGGGTTCTTCTTTT 59.790 38.462 0.00 0.00 34.79 2.27
970 977 5.257262 GGCAGATTTTAGAGGGTTCTTCTT 58.743 41.667 0.00 0.00 34.79 2.52
972 979 3.948473 GGGCAGATTTTAGAGGGTTCTTC 59.052 47.826 0.00 0.00 34.79 2.87
982 994 2.805099 GCATCTCGAGGGCAGATTTTAG 59.195 50.000 20.40 0.00 0.00 1.85
1440 1462 2.797087 GCAAGGCATGATCACGGAAATG 60.797 50.000 0.00 0.00 0.00 2.32
1630 1652 5.786401 AATCGAGAAGTGTTGAACTATGC 57.214 39.130 0.00 0.00 38.56 3.14
1646 1668 8.090831 TGAATAACTCCTGATATGGAAATCGAG 58.909 37.037 0.00 0.00 35.43 4.04
1932 1960 3.122369 GGCAAGGCCTGAATAGCAT 57.878 52.632 5.69 0.00 46.69 3.79
2344 2372 6.947733 ACATCCATATTGAAACAGGAAAGTCA 59.052 34.615 0.00 0.00 31.17 3.41
2424 2453 3.428862 CCCACAGGAAACAACAGTCAAAC 60.429 47.826 0.00 0.00 33.47 2.93
2635 2664 5.994054 GCATACCAGCTTTTATCTCATCAGA 59.006 40.000 0.00 0.00 0.00 3.27
2662 2691 7.255520 GCTTTTCAGCTTATCATCATGGAGATT 60.256 37.037 6.20 0.00 43.51 2.40
2786 2815 5.244178 ACTGATTACTTTCTCAGACCGTCTT 59.756 40.000 0.00 0.00 41.13 3.01
2831 2860 1.304134 TGTAGCCTCCGTCTCTGCA 60.304 57.895 0.00 0.00 0.00 4.41
2892 2921 2.256174 CATTGGAATGCTTCTGTTGCG 58.744 47.619 0.00 0.00 0.00 4.85
3005 3038 1.663739 GTGCCACGAGTCACCAGTA 59.336 57.895 0.00 0.00 0.00 2.74
3074 3107 7.759489 ATCTTTACTTGCCAAAGTTGTATCA 57.241 32.000 0.00 0.00 44.47 2.15
3143 3176 3.063997 CCTCGCAAACATATTGAGTCCAC 59.936 47.826 0.00 0.00 0.00 4.02
3185 3218 6.240549 ACCAGAACCACCTCATAATAAGAG 57.759 41.667 0.00 0.00 0.00 2.85
3194 3227 1.338674 CGCATAACCAGAACCACCTCA 60.339 52.381 0.00 0.00 0.00 3.86
3214 3247 7.122055 TCAACCAATTATCATAGGACAACCAAC 59.878 37.037 0.00 0.00 38.94 3.77
3242 3275 4.951715 TGACAAAAGGCAAGCATCAGATAT 59.048 37.500 0.00 0.00 0.00 1.63
3309 3342 5.064452 CACATGATTCAGAAGTGGTAGAAGC 59.936 44.000 0.00 0.00 0.00 3.86
3319 3352 6.204301 CAGGCCTATAACACATGATTCAGAAG 59.796 42.308 3.98 0.00 0.00 2.85
3372 3405 1.340502 TGCTTGTGTTGTTCCCACTCA 60.341 47.619 0.00 0.00 33.92 3.41
3410 3443 2.376032 GCTTCAAACGCTGTGTTCTTC 58.624 47.619 7.10 0.00 40.84 2.87
3456 3489 6.257411 CACATGGTTATACTTCTGCTTCAGAG 59.743 42.308 0.00 0.00 41.75 3.35
3487 3520 4.274950 CCATCAACACCGAAACTACAACTT 59.725 41.667 0.00 0.00 0.00 2.66
3646 3679 5.811399 TGGGCATAAATTAAGACGAACTG 57.189 39.130 0.00 0.00 0.00 3.16
3784 3817 8.750515 TGATCTGCATTAATTCTAATGTTCCA 57.249 30.769 6.71 0.00 44.32 3.53
3824 3857 5.350365 CCGTTGAATTCGTCTTGGATCTTTA 59.650 40.000 0.04 0.00 0.00 1.85
3828 3861 2.351726 CCCGTTGAATTCGTCTTGGATC 59.648 50.000 0.04 0.00 0.00 3.36
3938 3974 3.575965 AGCCAAATTTAAGCCGACTTG 57.424 42.857 8.38 0.00 36.57 3.16
3966 4002 1.136224 CGAAAAAGCTTCGGACAGAGC 60.136 52.381 0.00 0.00 38.19 4.09
3975 4011 1.745653 CCCTCCATCCGAAAAAGCTTC 59.254 52.381 0.00 0.00 0.00 3.86
3976 4012 1.354368 TCCCTCCATCCGAAAAAGCTT 59.646 47.619 0.00 0.00 0.00 3.74
3978 4014 1.834188 TTCCCTCCATCCGAAAAAGC 58.166 50.000 0.00 0.00 0.00 3.51
3979 4015 2.164422 GCTTTCCCTCCATCCGAAAAAG 59.836 50.000 0.00 0.00 0.00 2.27
3981 4017 1.354368 AGCTTTCCCTCCATCCGAAAA 59.646 47.619 0.00 0.00 0.00 2.29
3985 4021 0.253044 TCAAGCTTTCCCTCCATCCG 59.747 55.000 0.00 0.00 0.00 4.18
3986 4022 1.756430 GTCAAGCTTTCCCTCCATCC 58.244 55.000 0.00 0.00 0.00 3.51
3987 4023 1.066143 TCGTCAAGCTTTCCCTCCATC 60.066 52.381 0.00 0.00 0.00 3.51
3988 4024 0.984230 TCGTCAAGCTTTCCCTCCAT 59.016 50.000 0.00 0.00 0.00 3.41
3990 4026 3.145228 CTCGTCAAGCTTTCCCTCC 57.855 57.895 0.00 0.00 0.00 4.30
4000 4036 1.136611 CGTCCGAAAAAGCTCGTCAAG 60.137 52.381 0.00 0.00 37.11 3.02
4001 4037 0.856641 CGTCCGAAAAAGCTCGTCAA 59.143 50.000 0.00 0.00 37.11 3.18
4002 4038 0.942410 CCGTCCGAAAAAGCTCGTCA 60.942 55.000 0.00 0.00 37.11 4.35
4003 4039 0.665369 TCCGTCCGAAAAAGCTCGTC 60.665 55.000 0.00 0.00 37.11 4.20
4005 4041 1.352156 CCTCCGTCCGAAAAAGCTCG 61.352 60.000 0.00 0.00 38.58 5.03
4008 4044 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
4009 4045 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
4010 4046 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
4011 4047 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
4013 4049 2.579873 CTAATACTCCCTCCGTCCGAA 58.420 52.381 0.00 0.00 0.00 4.30
4014 4050 1.816961 GCTAATACTCCCTCCGTCCGA 60.817 57.143 0.00 0.00 0.00 4.55
4015 4051 0.597072 GCTAATACTCCCTCCGTCCG 59.403 60.000 0.00 0.00 0.00 4.79
4016 4052 1.700955 TGCTAATACTCCCTCCGTCC 58.299 55.000 0.00 0.00 0.00 4.79
4017 4053 3.814005 TTTGCTAATACTCCCTCCGTC 57.186 47.619 0.00 0.00 0.00 4.79
4021 4152 4.270008 TGCCTTTTTGCTAATACTCCCTC 58.730 43.478 0.00 0.00 0.00 4.30
4048 4180 7.280769 GCAAAGGCGAAAACTAAACATAAAAG 58.719 34.615 0.00 0.00 0.00 2.27
4109 4250 5.043248 CGTGATTTTGACTCTTTGGCTTTT 58.957 37.500 0.00 0.00 0.00 2.27
4323 4696 1.523501 CAAATGATTCGCCGTTGTCG 58.476 50.000 0.00 0.00 0.00 4.35
4450 4823 0.106894 TCCCAATGTGTGCGTGTGTA 59.893 50.000 0.00 0.00 0.00 2.90
4457 4830 0.881118 AACACGATCCCAATGTGTGC 59.119 50.000 4.40 0.00 45.48 4.57
4458 4831 2.150390 TCAACACGATCCCAATGTGTG 58.850 47.619 4.40 0.00 45.48 3.82
4460 4833 3.825308 CTTTCAACACGATCCCAATGTG 58.175 45.455 0.00 0.00 39.47 3.21
4462 4835 2.415893 GGCTTTCAACACGATCCCAATG 60.416 50.000 0.00 0.00 0.00 2.82
4463 4836 1.818674 GGCTTTCAACACGATCCCAAT 59.181 47.619 0.00 0.00 0.00 3.16
4464 4837 1.243902 GGCTTTCAACACGATCCCAA 58.756 50.000 0.00 0.00 0.00 4.12
4465 4838 0.109532 TGGCTTTCAACACGATCCCA 59.890 50.000 0.00 0.00 0.00 4.37
4466 4839 1.243902 TTGGCTTTCAACACGATCCC 58.756 50.000 0.00 0.00 0.00 3.85
4467 4840 2.661594 GTTTGGCTTTCAACACGATCC 58.338 47.619 0.00 0.00 34.67 3.36
4492 4865 6.449830 AATACCCTGGTGGACTTATATTCC 57.550 41.667 0.00 0.00 38.00 3.01
4510 4883 1.227383 CTGGTGGGCTGGGAATACC 59.773 63.158 0.00 0.00 40.81 2.73
4529 4902 5.642491 GTGTAGTGGAAACCTAGAATGAACC 59.358 44.000 0.00 0.00 0.00 3.62
4550 4923 1.287146 ACTCCTATACCTGACCCGTGT 59.713 52.381 0.00 0.00 0.00 4.49
4553 4926 1.962100 GGAACTCCTATACCTGACCCG 59.038 57.143 0.00 0.00 0.00 5.28
4574 4947 2.821991 CCTAGAATGGGTCGGATGAC 57.178 55.000 0.00 0.00 44.72 3.06
4585 4958 2.482494 AGGTGGGGAGAACCTAGAATG 58.518 52.381 0.00 0.00 46.44 2.67
4596 4969 3.087370 CCCTAAAAAGAAGGTGGGGAG 57.913 52.381 0.00 0.00 34.71 4.30
4598 4971 2.231716 CCCCTAAAAAGAAGGTGGGG 57.768 55.000 0.00 0.00 46.89 4.96
4599 4972 2.109304 TCACCCCTAAAAAGAAGGTGGG 59.891 50.000 7.58 0.00 46.47 4.61
4600 4973 3.518992 TCACCCCTAAAAAGAAGGTGG 57.481 47.619 7.58 0.00 46.47 4.61
4602 4975 4.220724 GGTTTCACCCCTAAAAAGAAGGT 58.779 43.478 0.00 0.00 31.70 3.50
4603 4976 4.219919 TGGTTTCACCCCTAAAAAGAAGG 58.780 43.478 0.00 0.00 37.50 3.46
4604 4977 5.739070 GCTTGGTTTCACCCCTAAAAAGAAG 60.739 44.000 0.00 0.00 37.50 2.85
4605 4978 4.100344 GCTTGGTTTCACCCCTAAAAAGAA 59.900 41.667 0.00 0.00 37.50 2.52
4606 4979 3.639561 GCTTGGTTTCACCCCTAAAAAGA 59.360 43.478 0.00 0.00 37.50 2.52
4607 4980 3.641436 AGCTTGGTTTCACCCCTAAAAAG 59.359 43.478 0.00 0.00 37.50 2.27
4608 4981 3.648739 AGCTTGGTTTCACCCCTAAAAA 58.351 40.909 0.00 0.00 37.50 1.94
4609 4982 3.322191 AGCTTGGTTTCACCCCTAAAA 57.678 42.857 0.00 0.00 37.50 1.52
4610 4983 3.322191 AAGCTTGGTTTCACCCCTAAA 57.678 42.857 0.00 0.00 37.50 1.85
4611 4984 3.322191 AAAGCTTGGTTTCACCCCTAA 57.678 42.857 0.00 0.00 37.50 2.69
4612 4985 4.668138 ATAAAGCTTGGTTTCACCCCTA 57.332 40.909 0.00 0.00 37.50 3.53
4613 4986 3.542969 ATAAAGCTTGGTTTCACCCCT 57.457 42.857 0.00 0.00 37.50 4.79
4614 4987 3.576550 TGAATAAAGCTTGGTTTCACCCC 59.423 43.478 0.00 0.00 37.50 4.95
4615 4988 4.522789 TCTGAATAAAGCTTGGTTTCACCC 59.477 41.667 0.00 0.00 37.50 4.61
4616 4989 5.705609 TCTGAATAAAGCTTGGTTTCACC 57.294 39.130 0.00 0.00 39.22 4.02
4617 4990 7.169813 CCTTTTCTGAATAAAGCTTGGTTTCAC 59.830 37.037 0.00 0.00 32.51 3.18
4618 4991 7.209475 CCTTTTCTGAATAAAGCTTGGTTTCA 58.791 34.615 0.00 9.05 32.51 2.69
4619 4992 6.146184 GCCTTTTCTGAATAAAGCTTGGTTTC 59.854 38.462 0.00 4.58 32.51 2.78
4620 4993 5.991606 GCCTTTTCTGAATAAAGCTTGGTTT 59.008 36.000 0.00 3.33 32.51 3.27
4621 4994 5.511373 GGCCTTTTCTGAATAAAGCTTGGTT 60.511 40.000 0.00 0.00 32.51 3.67
4622 4995 4.021104 GGCCTTTTCTGAATAAAGCTTGGT 60.021 41.667 0.00 0.00 32.51 3.67
4623 4996 4.021192 TGGCCTTTTCTGAATAAAGCTTGG 60.021 41.667 3.32 0.00 32.51 3.61
4624 4997 4.925646 GTGGCCTTTTCTGAATAAAGCTTG 59.074 41.667 3.32 0.00 32.51 4.01
4625 4998 4.588528 TGTGGCCTTTTCTGAATAAAGCTT 59.411 37.500 3.32 0.00 32.51 3.74
4626 4999 4.151883 TGTGGCCTTTTCTGAATAAAGCT 58.848 39.130 3.32 0.00 32.51 3.74
4627 5000 4.021981 ACTGTGGCCTTTTCTGAATAAAGC 60.022 41.667 3.32 0.00 32.51 3.51
4628 5001 5.474876 AGACTGTGGCCTTTTCTGAATAAAG 59.525 40.000 3.32 0.00 33.42 1.85
4629 5002 5.241506 CAGACTGTGGCCTTTTCTGAATAAA 59.758 40.000 15.25 0.00 36.58 1.40
4630 5003 4.761739 CAGACTGTGGCCTTTTCTGAATAA 59.238 41.667 15.25 0.00 36.58 1.40
4631 5004 4.202461 ACAGACTGTGGCCTTTTCTGAATA 60.202 41.667 22.93 0.00 37.67 1.75
4632 5005 3.152341 CAGACTGTGGCCTTTTCTGAAT 58.848 45.455 15.25 0.00 36.58 2.57
4633 5006 2.092429 ACAGACTGTGGCCTTTTCTGAA 60.092 45.455 22.93 0.00 37.67 3.02
4634 5007 1.490490 ACAGACTGTGGCCTTTTCTGA 59.510 47.619 22.93 0.00 37.67 3.27
4635 5008 1.605710 CACAGACTGTGGCCTTTTCTG 59.394 52.381 25.22 17.51 44.27 3.02
4636 5009 1.972872 CACAGACTGTGGCCTTTTCT 58.027 50.000 25.22 0.00 44.27 2.52
4646 5019 1.137086 GCGATGTATCCCACAGACTGT 59.863 52.381 1.07 1.07 41.51 3.55
4647 5020 1.410517 AGCGATGTATCCCACAGACTG 59.589 52.381 0.00 0.00 41.51 3.51
4648 5021 1.410517 CAGCGATGTATCCCACAGACT 59.589 52.381 0.00 0.00 41.51 3.24
4649 5022 1.539065 CCAGCGATGTATCCCACAGAC 60.539 57.143 0.00 0.00 41.51 3.51
4650 5023 0.752658 CCAGCGATGTATCCCACAGA 59.247 55.000 0.00 0.00 41.51 3.41
4651 5024 0.465705 ACCAGCGATGTATCCCACAG 59.534 55.000 0.00 0.00 41.51 3.66
4652 5025 0.464036 GACCAGCGATGTATCCCACA 59.536 55.000 0.00 0.00 42.69 4.17
4653 5026 0.597637 CGACCAGCGATGTATCCCAC 60.598 60.000 0.00 0.00 44.57 4.61
4654 5027 1.040893 ACGACCAGCGATGTATCCCA 61.041 55.000 0.00 0.00 44.57 4.37
4655 5028 0.597637 CACGACCAGCGATGTATCCC 60.598 60.000 0.00 0.00 44.57 3.85
4656 5029 0.597637 CCACGACCAGCGATGTATCC 60.598 60.000 0.00 0.00 44.57 2.59
4657 5030 0.597637 CCCACGACCAGCGATGTATC 60.598 60.000 0.00 0.00 44.57 2.24
4658 5031 1.040893 TCCCACGACCAGCGATGTAT 61.041 55.000 0.00 0.00 44.57 2.29
4659 5032 1.040893 ATCCCACGACCAGCGATGTA 61.041 55.000 0.00 0.00 44.57 2.29
4660 5033 1.899437 AATCCCACGACCAGCGATGT 61.899 55.000 0.00 0.00 44.57 3.06
4661 5034 1.153369 AATCCCACGACCAGCGATG 60.153 57.895 0.00 0.00 44.57 3.84
4662 5035 1.153369 CAATCCCACGACCAGCGAT 60.153 57.895 0.00 0.00 44.57 4.58
4663 5036 2.264480 CAATCCCACGACCAGCGA 59.736 61.111 0.00 0.00 44.57 4.93
4665 5038 3.134127 GCCAATCCCACGACCAGC 61.134 66.667 0.00 0.00 0.00 4.85
4666 5039 2.438434 GGCCAATCCCACGACCAG 60.438 66.667 0.00 0.00 0.00 4.00
4667 5040 4.402528 CGGCCAATCCCACGACCA 62.403 66.667 2.24 0.00 0.00 4.02
4668 5041 3.615509 TTCGGCCAATCCCACGACC 62.616 63.158 2.24 0.00 34.82 4.79
4669 5042 2.046700 TTCGGCCAATCCCACGAC 60.047 61.111 2.24 0.00 34.82 4.34
4670 5043 2.046700 GTTCGGCCAATCCCACGA 60.047 61.111 2.24 0.00 0.00 4.35
4671 5044 3.131478 GGTTCGGCCAATCCCACG 61.131 66.667 2.24 0.00 37.17 4.94
4672 5045 2.034999 TGGTTCGGCCAATCCCAC 59.965 61.111 2.24 0.00 45.94 4.61
4679 5052 2.282110 CCATGTGTGGTTCGGCCA 60.282 61.111 2.24 0.00 46.95 5.36
4688 5061 0.460284 GGTCTAGGACGCCATGTGTG 60.460 60.000 0.00 0.00 32.65 3.82
4689 5062 1.614241 GGGTCTAGGACGCCATGTGT 61.614 60.000 3.81 0.00 39.17 3.72
4690 5063 1.144057 GGGTCTAGGACGCCATGTG 59.856 63.158 3.81 0.00 39.17 3.21
4691 5064 0.907704 TTGGGTCTAGGACGCCATGT 60.908 55.000 11.19 0.00 43.42 3.21
4692 5065 0.251916 TTTGGGTCTAGGACGCCATG 59.748 55.000 11.19 0.00 43.42 3.66
4693 5066 0.541863 CTTTGGGTCTAGGACGCCAT 59.458 55.000 11.19 0.00 43.42 4.40
4694 5067 0.543410 TCTTTGGGTCTAGGACGCCA 60.543 55.000 11.19 7.70 43.42 5.69
4695 5068 0.611714 TTCTTTGGGTCTAGGACGCC 59.388 55.000 11.19 5.57 43.42 5.68
4696 5069 2.467566 TTTCTTTGGGTCTAGGACGC 57.532 50.000 7.61 7.61 44.15 5.19
4697 5070 4.946784 CATTTTCTTTGGGTCTAGGACG 57.053 45.455 0.00 0.00 32.65 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.