Multiple sequence alignment - TraesCS2D01G257700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G257700 chr2D 100.000 2744 0 0 1 2744 313715888 313713145 0.000000e+00 5068.0
1 TraesCS2D01G257700 chr2D 85.424 590 74 9 1100 1677 313811615 313811026 1.090000e-168 603.0
2 TraesCS2D01G257700 chr2D 94.306 281 9 1 2063 2336 138290710 138290990 9.080000e-115 424.0
3 TraesCS2D01G257700 chr2D 75.858 787 133 33 1 741 129835760 129836535 5.620000e-92 348.0
4 TraesCS2D01G257700 chr2D 85.139 323 41 6 1 318 477631419 477631099 9.480000e-85 324.0
5 TraesCS2D01G257700 chr2D 85.467 289 34 2 2054 2334 539901981 539902269 7.430000e-76 294.0
6 TraesCS2D01G257700 chr2D 94.271 192 10 1 2331 2521 3217512 3217321 2.670000e-75 292.0
7 TraesCS2D01G257700 chr2D 94.241 191 9 2 2332 2521 56293701 56293512 9.610000e-75 291.0
8 TraesCS2D01G257700 chr2B 90.728 1305 75 23 773 2068 381317467 381316200 0.000000e+00 1698.0
9 TraesCS2D01G257700 chr2B 84.157 587 75 12 1100 1677 381520359 381519782 1.110000e-153 553.0
10 TraesCS2D01G257700 chr2B 93.333 195 11 2 2327 2520 230774037 230773844 1.240000e-73 287.0
11 TraesCS2D01G257700 chr2B 83.453 278 39 4 2065 2335 82179105 82178828 4.540000e-63 252.0
12 TraesCS2D01G257700 chr2B 97.321 112 2 1 2516 2626 381316205 381316094 3.610000e-44 189.0
13 TraesCS2D01G257700 chr2B 90.588 85 7 1 2628 2711 381306061 381305977 8.030000e-21 111.0
14 TraesCS2D01G257700 chr2A 91.152 825 29 9 1014 1807 423176307 423177118 0.000000e+00 1079.0
15 TraesCS2D01G257700 chr2A 85.420 583 73 9 1100 1670 422784867 422784285 1.820000e-166 595.0
16 TraesCS2D01G257700 chr2A 85.897 390 38 9 1801 2176 423177343 423177729 1.530000e-107 399.0
17 TraesCS2D01G257700 chr2A 91.304 69 6 0 775 843 423176191 423176259 8.090000e-16 95.3
18 TraesCS2D01G257700 chr2A 98.000 50 1 0 2661 2710 423178607 423178656 1.350000e-13 87.9
19 TraesCS2D01G257700 chr1A 84.670 698 80 17 995 1677 586606174 586605489 0.000000e+00 671.0
20 TraesCS2D01G257700 chr1A 86.224 588 67 8 1100 1677 586599100 586598517 2.320000e-175 625.0
21 TraesCS2D01G257700 chr1D 83.133 664 82 15 1028 1677 487883634 487884281 1.830000e-161 579.0
22 TraesCS2D01G257700 chr1D 84.229 577 67 12 1110 1677 487864991 487864430 8.640000e-150 540.0
23 TraesCS2D01G257700 chr1D 93.929 280 10 1 2063 2335 442406813 442407092 1.520000e-112 416.0
24 TraesCS2D01G257700 chr1D 94.681 188 9 1 2332 2518 93500982 93501169 9.610000e-75 291.0
25 TraesCS2D01G257700 chr1D 93.782 193 12 0 2326 2518 377014266 377014074 9.610000e-75 291.0
26 TraesCS2D01G257700 chr1D 87.356 261 24 4 1100 1354 487859741 487859484 9.610000e-75 291.0
27 TraesCS2D01G257700 chr1D 91.139 158 11 2 2061 2215 425540765 425540608 7.700000e-51 211.0
28 TraesCS2D01G257700 chr1D 83.333 222 23 9 2056 2270 49766607 49766393 2.790000e-45 193.0
29 TraesCS2D01G257700 chr1D 80.909 110 8 6 992 1090 487859884 487859777 1.050000e-09 75.0
30 TraesCS2D01G257700 chr1B 84.444 585 68 12 1100 1677 679674181 679673613 3.090000e-154 555.0
31 TraesCS2D01G257700 chr1B 86.435 317 28 2 1128 1444 679668531 679668230 1.570000e-87 333.0
32 TraesCS2D01G257700 chr1B 84.120 233 33 2 1448 1677 679667796 679667565 3.560000e-54 222.0
33 TraesCS2D01G257700 chr3D 78.378 777 105 27 1 744 590675495 590676241 1.940000e-121 446.0
34 TraesCS2D01G257700 chr3D 93.907 279 10 1 2063 2334 42402321 42402043 5.470000e-112 414.0
35 TraesCS2D01G257700 chr3D 93.571 280 11 6 2063 2335 96588718 96588439 7.070000e-111 411.0
36 TraesCS2D01G257700 chr3D 81.179 441 53 18 1 414 605950774 605951211 7.330000e-86 327.0
37 TraesCS2D01G257700 chr3D 81.728 405 55 12 1 387 83892484 83892887 1.230000e-83 320.0
38 TraesCS2D01G257700 chr3D 86.014 286 33 1 2058 2336 288675533 288675248 1.600000e-77 300.0
39 TraesCS2D01G257700 chr3D 94.737 190 9 1 2330 2518 388314822 388314633 7.430000e-76 294.0
40 TraesCS2D01G257700 chr7D 95.636 275 5 1 2065 2332 505594822 505595096 4.200000e-118 435.0
41 TraesCS2D01G257700 chr7D 94.161 274 15 1 2065 2338 520315607 520315335 1.520000e-112 416.0
42 TraesCS2D01G257700 chr7D 82.877 438 60 12 1 425 384949850 384950285 1.990000e-101 379.0
43 TraesCS2D01G257700 chr7D 80.974 431 55 15 1 425 98037043 98037452 1.590000e-82 316.0
44 TraesCS2D01G257700 chr7D 94.709 189 9 1 2331 2518 484321875 484322063 2.670000e-75 292.0
45 TraesCS2D01G257700 chr7D 94.241 191 10 1 2330 2519 161844577 161844387 9.610000e-75 291.0
46 TraesCS2D01G257700 chr5B 94.097 288 9 2 2056 2335 544337016 544337303 5.430000e-117 431.0
47 TraesCS2D01G257700 chr5B 77.647 595 95 26 48 613 356488909 356489494 7.330000e-86 327.0
48 TraesCS2D01G257700 chr6D 93.929 280 10 1 2065 2337 9452651 9452372 1.520000e-112 416.0
49 TraesCS2D01G257700 chr6D 95.213 188 9 0 2331 2518 284659743 284659556 5.740000e-77 298.0
50 TraesCS2D01G257700 chr5D 93.262 282 12 1 2062 2336 518286732 518287013 2.540000e-110 409.0
51 TraesCS2D01G257700 chr5D 76.671 793 120 34 2 740 65752429 65751648 1.990000e-101 379.0
52 TraesCS2D01G257700 chr5D 82.353 374 54 9 1 368 315206745 315206378 5.700000e-82 315.0
53 TraesCS2D01G257700 chr5D 75.416 541 88 27 1 504 330428740 330428208 1.280000e-53 220.0
54 TraesCS2D01G257700 chr5D 90.909 165 7 2 2059 2215 395951432 395951268 5.950000e-52 215.0
55 TraesCS2D01G257700 chr5A 75.262 764 136 28 1 722 25849040 25848288 5.700000e-82 315.0
56 TraesCS2D01G257700 chr5A 80.864 162 29 2 415 575 290687507 290687667 2.870000e-25 126.0
57 TraesCS2D01G257700 chr6B 84.858 317 35 9 120 425 92615805 92615491 9.550000e-80 307.0
58 TraesCS2D01G257700 chr3B 76.236 627 102 26 39 631 670191902 670191289 3.460000e-74 289.0
59 TraesCS2D01G257700 chr3B 79.710 207 28 9 288 482 132637653 132637449 1.330000e-28 137.0
60 TraesCS2D01G257700 chr3A 75.039 633 135 16 1 613 76202277 76201648 3.480000e-69 272.0
61 TraesCS2D01G257700 chr6A 91.139 158 7 4 2065 2215 593301898 593301741 9.960000e-50 207.0
62 TraesCS2D01G257700 chr4D 87.234 188 11 6 2057 2236 179309182 179309364 4.630000e-48 202.0
63 TraesCS2D01G257700 chr7A 87.912 91 11 0 415 505 310015734 310015644 1.040000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G257700 chr2D 313713145 313715888 2743 True 5068.0 5068 100.00000 1 2744 1 chr2D.!!$R3 2743
1 TraesCS2D01G257700 chr2D 313811026 313811615 589 True 603.0 603 85.42400 1100 1677 1 chr2D.!!$R4 577
2 TraesCS2D01G257700 chr2D 129835760 129836535 775 False 348.0 348 75.85800 1 741 1 chr2D.!!$F1 740
3 TraesCS2D01G257700 chr2B 381316094 381317467 1373 True 943.5 1698 94.02450 773 2626 2 chr2B.!!$R5 1853
4 TraesCS2D01G257700 chr2B 381519782 381520359 577 True 553.0 553 84.15700 1100 1677 1 chr2B.!!$R4 577
5 TraesCS2D01G257700 chr2A 422784285 422784867 582 True 595.0 595 85.42000 1100 1670 1 chr2A.!!$R1 570
6 TraesCS2D01G257700 chr2A 423176191 423178656 2465 False 415.3 1079 91.58825 775 2710 4 chr2A.!!$F1 1935
7 TraesCS2D01G257700 chr1A 586605489 586606174 685 True 671.0 671 84.67000 995 1677 1 chr1A.!!$R2 682
8 TraesCS2D01G257700 chr1A 586598517 586599100 583 True 625.0 625 86.22400 1100 1677 1 chr1A.!!$R1 577
9 TraesCS2D01G257700 chr1D 487883634 487884281 647 False 579.0 579 83.13300 1028 1677 1 chr1D.!!$F3 649
10 TraesCS2D01G257700 chr1D 487864430 487864991 561 True 540.0 540 84.22900 1110 1677 1 chr1D.!!$R4 567
11 TraesCS2D01G257700 chr1B 679673613 679674181 568 True 555.0 555 84.44400 1100 1677 1 chr1B.!!$R1 577
12 TraesCS2D01G257700 chr1B 679667565 679668531 966 True 277.5 333 85.27750 1128 1677 2 chr1B.!!$R2 549
13 TraesCS2D01G257700 chr3D 590675495 590676241 746 False 446.0 446 78.37800 1 744 1 chr3D.!!$F2 743
14 TraesCS2D01G257700 chr5B 356488909 356489494 585 False 327.0 327 77.64700 48 613 1 chr5B.!!$F1 565
15 TraesCS2D01G257700 chr5D 65751648 65752429 781 True 379.0 379 76.67100 2 740 1 chr5D.!!$R1 738
16 TraesCS2D01G257700 chr5D 330428208 330428740 532 True 220.0 220 75.41600 1 504 1 chr5D.!!$R3 503
17 TraesCS2D01G257700 chr5A 25848288 25849040 752 True 315.0 315 75.26200 1 722 1 chr5A.!!$R1 721
18 TraesCS2D01G257700 chr3B 670191289 670191902 613 True 289.0 289 76.23600 39 631 1 chr3B.!!$R2 592
19 TraesCS2D01G257700 chr3A 76201648 76202277 629 True 272.0 272 75.03900 1 613 1 chr3A.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 784 0.034337 TTGTCCACACCGACCTAAGC 59.966 55.0 0.0 0.0 31.35 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2399 3535 0.109913 AAGTCCCTCCCGTTTGGTTC 59.89 55.0 0.0 0.0 34.77 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 3.241530 AACGCTGCACCTCCTCCA 61.242 61.111 0.00 0.00 0.00 3.86
145 146 1.919600 GCTGGCACTGGGATCCTCTT 61.920 60.000 12.58 0.00 0.00 2.85
146 147 0.107312 CTGGCACTGGGATCCTCTTG 60.107 60.000 12.58 7.15 0.00 3.02
202 204 2.043248 TAGGGGAGAGGGACGTGC 60.043 66.667 0.00 0.00 0.00 5.34
319 344 1.301165 CCTTGGCTTTGCTGTTGCC 60.301 57.895 0.00 0.00 46.26 4.52
346 384 1.547675 GGAGAAGAACCCCATTGTGCA 60.548 52.381 0.00 0.00 0.00 4.57
368 428 4.832608 CTAGGGTTGCCGCCGACC 62.833 72.222 0.00 0.00 43.73 4.79
370 430 3.961225 TAGGGTTGCCGCCGACCTA 62.961 63.158 2.28 6.50 43.90 3.08
374 434 3.766691 TTGCCGCCGACCTAGGAC 61.767 66.667 17.98 8.80 0.00 3.85
378 438 2.754658 CGCCGACCTAGGACCAGT 60.755 66.667 17.98 0.00 0.00 4.00
512 602 8.736244 TCATAAATTAAGCTGACCAAACTAACC 58.264 33.333 0.00 0.00 0.00 2.85
519 609 1.232119 GACCAAACTAACCGTGGGTG 58.768 55.000 0.00 0.00 35.34 4.61
535 625 2.033448 TGGTTGGATGACCGCCAC 59.967 61.111 0.00 0.00 42.83 5.01
571 661 3.788766 CCGAAAAGGCACGCGAGG 61.789 66.667 15.93 5.48 0.00 4.63
572 662 4.445545 CGAAAAGGCACGCGAGGC 62.446 66.667 21.96 21.96 0.00 4.70
594 684 3.430862 GCTTTGCGTCCATGCCGA 61.431 61.111 7.14 0.00 0.00 5.54
595 685 2.480555 CTTTGCGTCCATGCCGAC 59.519 61.111 7.14 0.10 0.00 4.79
603 693 2.452006 GTCCATGCCGACGTATTTTG 57.548 50.000 0.00 0.00 0.00 2.44
604 694 1.063469 GTCCATGCCGACGTATTTTGG 59.937 52.381 0.00 0.00 0.00 3.28
605 695 0.248458 CCATGCCGACGTATTTTGGC 60.248 55.000 7.94 7.94 45.46 4.52
606 696 0.248458 CATGCCGACGTATTTTGGCC 60.248 55.000 0.00 0.00 44.71 5.36
607 697 1.711060 ATGCCGACGTATTTTGGCCG 61.711 55.000 0.00 0.00 44.71 6.13
608 698 2.401990 CCGACGTATTTTGGCCGC 59.598 61.111 0.00 0.00 0.00 6.53
609 699 2.392181 CCGACGTATTTTGGCCGCA 61.392 57.895 0.00 0.00 0.00 5.69
610 700 1.498166 CGACGTATTTTGGCCGCAA 59.502 52.632 0.00 0.00 0.00 4.85
611 701 0.110147 CGACGTATTTTGGCCGCAAA 60.110 50.000 0.00 0.00 0.00 3.68
612 702 1.466697 CGACGTATTTTGGCCGCAAAT 60.467 47.619 15.18 15.18 0.00 2.32
613 703 1.917303 GACGTATTTTGGCCGCAAATG 59.083 47.619 18.70 8.71 0.00 2.32
614 704 0.644843 CGTATTTTGGCCGCAAATGC 59.355 50.000 18.70 16.64 37.78 3.56
615 705 1.719600 GTATTTTGGCCGCAAATGCA 58.280 45.000 18.70 0.00 42.21 3.96
616 706 2.278854 GTATTTTGGCCGCAAATGCAT 58.721 42.857 18.70 0.00 42.21 3.96
617 707 1.371595 ATTTTGGCCGCAAATGCATC 58.628 45.000 11.09 0.00 42.21 3.91
618 708 0.321021 TTTTGGCCGCAAATGCATCT 59.679 45.000 0.00 0.00 42.21 2.90
619 709 0.390078 TTTGGCCGCAAATGCATCTG 60.390 50.000 0.00 0.00 42.21 2.90
620 710 2.584143 GGCCGCAAATGCATCTGC 60.584 61.111 15.21 15.21 42.21 4.26
631 721 2.809174 CATCTGCACGGACGCGAA 60.809 61.111 15.93 0.00 33.35 4.70
632 722 2.507102 ATCTGCACGGACGCGAAG 60.507 61.111 15.93 5.82 33.35 3.79
650 740 3.442950 GCGGACGCGTTTTAAGTTT 57.557 47.368 15.53 0.00 0.00 2.66
651 741 1.039487 GCGGACGCGTTTTAAGTTTG 58.961 50.000 15.53 0.00 0.00 2.93
652 742 1.333081 GCGGACGCGTTTTAAGTTTGA 60.333 47.619 15.53 0.00 0.00 2.69
653 743 2.850254 GCGGACGCGTTTTAAGTTTGAA 60.850 45.455 15.53 0.00 0.00 2.69
654 744 3.547601 CGGACGCGTTTTAAGTTTGAAT 58.452 40.909 15.53 0.00 0.00 2.57
655 745 3.596562 CGGACGCGTTTTAAGTTTGAATC 59.403 43.478 15.53 0.00 0.00 2.52
656 746 3.596562 GGACGCGTTTTAAGTTTGAATCG 59.403 43.478 15.53 0.00 0.00 3.34
657 747 3.547601 ACGCGTTTTAAGTTTGAATCGG 58.452 40.909 5.58 0.00 0.00 4.18
658 748 2.337352 CGCGTTTTAAGTTTGAATCGGC 59.663 45.455 0.00 0.00 0.00 5.54
659 749 2.337352 GCGTTTTAAGTTTGAATCGGCG 59.663 45.455 0.00 0.00 0.00 6.46
660 750 2.337352 CGTTTTAAGTTTGAATCGGCGC 59.663 45.455 0.00 0.00 0.00 6.53
661 751 2.235238 TTTAAGTTTGAATCGGCGCG 57.765 45.000 0.00 0.00 0.00 6.86
662 752 1.149987 TTAAGTTTGAATCGGCGCGT 58.850 45.000 8.43 0.00 0.00 6.01
663 753 1.149987 TAAGTTTGAATCGGCGCGTT 58.850 45.000 8.43 0.00 0.00 4.84
664 754 0.309612 AAGTTTGAATCGGCGCGTTT 59.690 45.000 8.43 0.00 0.00 3.60
665 755 0.385473 AGTTTGAATCGGCGCGTTTG 60.385 50.000 8.43 0.00 0.00 2.93
666 756 0.384974 GTTTGAATCGGCGCGTTTGA 60.385 50.000 8.43 3.44 0.00 2.69
667 757 0.384974 TTTGAATCGGCGCGTTTGAC 60.385 50.000 8.43 0.00 0.00 3.18
668 758 2.097728 GAATCGGCGCGTTTGACC 59.902 61.111 8.43 0.00 0.00 4.02
669 759 2.358247 AATCGGCGCGTTTGACCT 60.358 55.556 8.43 0.00 0.00 3.85
670 760 2.292802 GAATCGGCGCGTTTGACCTC 62.293 60.000 8.43 0.73 0.00 3.85
671 761 3.583276 ATCGGCGCGTTTGACCTCA 62.583 57.895 8.43 0.00 0.00 3.86
672 762 2.852495 ATCGGCGCGTTTGACCTCAT 62.852 55.000 8.43 0.00 0.00 2.90
673 763 2.677003 CGGCGCGTTTGACCTCATT 61.677 57.895 8.43 0.00 0.00 2.57
674 764 1.579429 GGCGCGTTTGACCTCATTT 59.421 52.632 8.43 0.00 0.00 2.32
675 765 0.039527 GGCGCGTTTGACCTCATTTT 60.040 50.000 8.43 0.00 0.00 1.82
676 766 1.601914 GGCGCGTTTGACCTCATTTTT 60.602 47.619 8.43 0.00 0.00 1.94
677 767 1.451651 GCGCGTTTGACCTCATTTTTG 59.548 47.619 8.43 0.00 0.00 2.44
678 768 2.726633 CGCGTTTGACCTCATTTTTGT 58.273 42.857 0.00 0.00 0.00 2.83
679 769 2.719046 CGCGTTTGACCTCATTTTTGTC 59.281 45.455 0.00 0.00 0.00 3.18
680 770 3.049912 GCGTTTGACCTCATTTTTGTCC 58.950 45.455 0.00 0.00 0.00 4.02
681 771 3.490078 GCGTTTGACCTCATTTTTGTCCA 60.490 43.478 0.00 0.00 0.00 4.02
682 772 4.041723 CGTTTGACCTCATTTTTGTCCAC 58.958 43.478 0.00 0.00 0.00 4.02
683 773 4.439426 CGTTTGACCTCATTTTTGTCCACA 60.439 41.667 0.00 0.00 0.00 4.17
684 774 4.647424 TTGACCTCATTTTTGTCCACAC 57.353 40.909 0.00 0.00 0.00 3.82
685 775 2.955660 TGACCTCATTTTTGTCCACACC 59.044 45.455 0.00 0.00 0.00 4.16
686 776 1.953686 ACCTCATTTTTGTCCACACCG 59.046 47.619 0.00 0.00 0.00 4.94
687 777 2.226330 CCTCATTTTTGTCCACACCGA 58.774 47.619 0.00 0.00 0.00 4.69
688 778 2.031157 CCTCATTTTTGTCCACACCGAC 60.031 50.000 0.00 0.00 0.00 4.79
689 779 1.950909 TCATTTTTGTCCACACCGACC 59.049 47.619 0.00 0.00 31.35 4.79
690 780 1.953686 CATTTTTGTCCACACCGACCT 59.046 47.619 0.00 0.00 31.35 3.85
691 781 3.142951 CATTTTTGTCCACACCGACCTA 58.857 45.455 0.00 0.00 31.35 3.08
692 782 3.278668 TTTTTGTCCACACCGACCTAA 57.721 42.857 0.00 0.00 31.35 2.69
693 783 2.536761 TTTGTCCACACCGACCTAAG 57.463 50.000 0.00 0.00 31.35 2.18
694 784 0.034337 TTGTCCACACCGACCTAAGC 59.966 55.000 0.00 0.00 31.35 3.09
695 785 1.445582 GTCCACACCGACCTAAGCG 60.446 63.158 0.00 0.00 0.00 4.68
696 786 1.604308 TCCACACCGACCTAAGCGA 60.604 57.895 0.00 0.00 0.00 4.93
697 787 1.180456 TCCACACCGACCTAAGCGAA 61.180 55.000 0.00 0.00 0.00 4.70
698 788 0.108329 CCACACCGACCTAAGCGAAT 60.108 55.000 0.00 0.00 0.00 3.34
699 789 0.999406 CACACCGACCTAAGCGAATG 59.001 55.000 0.00 0.00 0.00 2.67
700 790 0.739813 ACACCGACCTAAGCGAATGC 60.740 55.000 0.00 0.00 43.24 3.56
701 791 0.739462 CACCGACCTAAGCGAATGCA 60.739 55.000 0.00 0.00 46.23 3.96
702 792 0.460284 ACCGACCTAAGCGAATGCAG 60.460 55.000 0.00 0.00 46.23 4.41
703 793 1.154205 CCGACCTAAGCGAATGCAGG 61.154 60.000 0.00 0.00 46.23 4.85
704 794 1.766143 CGACCTAAGCGAATGCAGGC 61.766 60.000 0.00 0.00 46.23 4.85
705 795 1.766143 GACCTAAGCGAATGCAGGCG 61.766 60.000 6.62 6.62 46.23 5.52
706 796 2.537560 CCTAAGCGAATGCAGGCGG 61.538 63.158 12.13 0.37 46.23 6.13
707 797 1.521457 CTAAGCGAATGCAGGCGGA 60.521 57.895 12.13 0.00 46.23 5.54
708 798 1.766143 CTAAGCGAATGCAGGCGGAC 61.766 60.000 12.13 0.00 46.23 4.79
711 801 3.118454 CGAATGCAGGCGGACGTT 61.118 61.111 3.29 0.00 0.00 3.99
712 802 2.677003 CGAATGCAGGCGGACGTTT 61.677 57.895 3.29 0.00 0.00 3.60
713 803 1.579429 GAATGCAGGCGGACGTTTT 59.421 52.632 0.00 0.00 0.00 2.43
714 804 0.729140 GAATGCAGGCGGACGTTTTG 60.729 55.000 0.00 0.00 0.00 2.44
715 805 2.141122 AATGCAGGCGGACGTTTTGG 62.141 55.000 0.00 0.00 0.00 3.28
716 806 2.975799 GCAGGCGGACGTTTTGGA 60.976 61.111 0.00 0.00 0.00 3.53
717 807 2.332654 GCAGGCGGACGTTTTGGAT 61.333 57.895 0.00 0.00 0.00 3.41
718 808 1.794222 CAGGCGGACGTTTTGGATC 59.206 57.895 0.00 0.00 0.00 3.36
719 809 1.740296 AGGCGGACGTTTTGGATCG 60.740 57.895 0.00 0.00 0.00 3.69
720 810 2.097728 GCGGACGTTTTGGATCGC 59.902 61.111 0.00 0.00 36.51 4.58
721 811 2.388232 GCGGACGTTTTGGATCGCT 61.388 57.895 0.00 0.00 40.00 4.93
722 812 1.419922 CGGACGTTTTGGATCGCTG 59.580 57.895 0.00 0.00 0.00 5.18
723 813 1.134694 GGACGTTTTGGATCGCTGC 59.865 57.895 0.00 0.00 0.00 5.25
724 814 1.225745 GACGTTTTGGATCGCTGCG 60.226 57.895 17.25 17.25 0.00 5.18
725 815 1.897398 GACGTTTTGGATCGCTGCGT 61.897 55.000 22.48 9.40 0.00 5.24
726 816 1.225745 CGTTTTGGATCGCTGCGTC 60.226 57.895 22.48 17.30 0.00 5.19
727 817 1.225745 GTTTTGGATCGCTGCGTCG 60.226 57.895 22.48 0.00 0.00 5.12
728 818 2.387445 TTTTGGATCGCTGCGTCGG 61.387 57.895 22.48 0.00 0.00 4.79
729 819 2.773397 TTTTGGATCGCTGCGTCGGA 62.773 55.000 22.48 2.28 0.00 4.55
730 820 3.699955 TTGGATCGCTGCGTCGGAG 62.700 63.158 22.48 9.71 0.00 4.63
731 821 4.194720 GGATCGCTGCGTCGGAGT 62.195 66.667 22.48 0.00 0.00 3.85
732 822 2.202623 GATCGCTGCGTCGGAGTT 60.203 61.111 22.48 0.83 0.00 3.01
733 823 2.507102 ATCGCTGCGTCGGAGTTG 60.507 61.111 22.48 8.52 0.00 3.16
736 826 3.482783 GCTGCGTCGGAGTTGCTC 61.483 66.667 15.54 0.00 0.00 4.26
737 827 2.259818 CTGCGTCGGAGTTGCTCT 59.740 61.111 5.47 0.00 0.00 4.09
738 828 1.373497 CTGCGTCGGAGTTGCTCTT 60.373 57.895 5.47 0.00 0.00 2.85
739 829 0.109272 CTGCGTCGGAGTTGCTCTTA 60.109 55.000 5.47 0.00 0.00 2.10
740 830 0.530744 TGCGTCGGAGTTGCTCTTAT 59.469 50.000 0.00 0.00 0.00 1.73
741 831 1.201343 GCGTCGGAGTTGCTCTTATC 58.799 55.000 0.00 0.00 0.00 1.75
742 832 1.841450 CGTCGGAGTTGCTCTTATCC 58.159 55.000 0.00 0.00 0.00 2.59
743 833 1.405821 CGTCGGAGTTGCTCTTATCCT 59.594 52.381 0.00 0.00 0.00 3.24
744 834 2.541999 CGTCGGAGTTGCTCTTATCCTC 60.542 54.545 0.00 0.00 0.00 3.71
745 835 2.691011 GTCGGAGTTGCTCTTATCCTCT 59.309 50.000 0.00 0.00 0.00 3.69
746 836 3.884091 GTCGGAGTTGCTCTTATCCTCTA 59.116 47.826 0.00 0.00 0.00 2.43
747 837 4.521256 GTCGGAGTTGCTCTTATCCTCTAT 59.479 45.833 0.00 0.00 0.00 1.98
748 838 5.706369 GTCGGAGTTGCTCTTATCCTCTATA 59.294 44.000 0.00 0.00 0.00 1.31
749 839 6.376018 GTCGGAGTTGCTCTTATCCTCTATAT 59.624 42.308 0.00 0.00 0.00 0.86
750 840 6.948886 TCGGAGTTGCTCTTATCCTCTATATT 59.051 38.462 0.00 0.00 0.00 1.28
751 841 8.107729 TCGGAGTTGCTCTTATCCTCTATATTA 58.892 37.037 0.00 0.00 0.00 0.98
752 842 8.740906 CGGAGTTGCTCTTATCCTCTATATTAA 58.259 37.037 0.00 0.00 0.00 1.40
756 846 9.825109 GTTGCTCTTATCCTCTATATTAATCCC 57.175 37.037 0.00 0.00 0.00 3.85
757 847 9.560860 TTGCTCTTATCCTCTATATTAATCCCA 57.439 33.333 0.00 0.00 0.00 4.37
758 848 8.982723 TGCTCTTATCCTCTATATTAATCCCAC 58.017 37.037 0.00 0.00 0.00 4.61
759 849 9.207868 GCTCTTATCCTCTATATTAATCCCACT 57.792 37.037 0.00 0.00 0.00 4.00
920 1010 2.981859 AAAATATCCGTGCCGAGTCT 57.018 45.000 0.00 0.00 0.00 3.24
972 1067 0.678048 GCCAGTCTGTCATGTTCCCC 60.678 60.000 0.00 0.00 0.00 4.81
987 1082 4.147587 CCCATTCCCCTGCCCCTG 62.148 72.222 0.00 0.00 0.00 4.45
989 1084 4.847367 CATTCCCCTGCCCCTGCC 62.847 72.222 0.00 0.00 36.33 4.85
993 1088 4.766632 CCCCTGCCCCTGCCTTTC 62.767 72.222 0.00 0.00 36.33 2.62
1023 1118 5.491078 CCTATATATAACTGGCCCTCCCAAA 59.509 44.000 0.00 0.00 44.81 3.28
1677 2290 0.730265 TGCGAGTGAACCAACACAAC 59.270 50.000 0.00 0.00 42.45 3.32
1678 2291 0.730265 GCGAGTGAACCAACACAACA 59.270 50.000 0.00 0.00 42.45 3.33
1679 2292 1.531058 GCGAGTGAACCAACACAACAC 60.531 52.381 0.00 0.00 42.45 3.32
1680 2293 1.735018 CGAGTGAACCAACACAACACA 59.265 47.619 0.00 0.00 42.45 3.72
1681 2294 2.160615 CGAGTGAACCAACACAACACAA 59.839 45.455 0.00 0.00 42.45 3.33
1711 2324 0.455295 GTCGCGGATGGATCGATCTC 60.455 60.000 23.96 14.71 34.61 2.75
1799 2453 3.214328 GAAACAGAGCAAAGGAAGGTGA 58.786 45.455 0.00 0.00 0.00 4.02
1841 2726 0.319469 GGATGGGCGGTGTTTGTTTG 60.319 55.000 0.00 0.00 0.00 2.93
1944 2829 3.053455 GAGTTTGTGGTCTCAAGTCTCG 58.947 50.000 0.00 0.00 0.00 4.04
1974 2859 7.414436 ACAACGAAATGTGAATATAAATCCCG 58.586 34.615 0.00 0.00 30.82 5.14
1994 2879 1.229177 AGGTCCCCACATTTTGCCC 60.229 57.895 0.00 0.00 0.00 5.36
2071 2957 4.261801 TGGAAACCTGCAATTAGACTAGC 58.738 43.478 0.00 0.00 0.00 3.42
2074 2960 3.268023 ACCTGCAATTAGACTAGCCAC 57.732 47.619 0.00 0.00 0.00 5.01
2079 2965 3.947196 TGCAATTAGACTAGCCACAATGG 59.053 43.478 0.00 0.00 41.55 3.16
2080 2966 3.316308 GCAATTAGACTAGCCACAATGGG 59.684 47.826 0.00 0.00 38.19 4.00
2093 2979 5.057149 GCCACAATGGGTAGTAACATAGAG 58.943 45.833 0.00 0.00 38.19 2.43
2096 2982 7.434492 CCACAATGGGTAGTAACATAGAGTAG 58.566 42.308 0.00 0.00 32.67 2.57
2099 2985 9.129532 ACAATGGGTAGTAACATAGAGTAGTAC 57.870 37.037 0.00 0.00 0.00 2.73
2100 2986 9.128404 CAATGGGTAGTAACATAGAGTAGTACA 57.872 37.037 2.52 0.00 0.00 2.90
2101 2987 9.878737 AATGGGTAGTAACATAGAGTAGTACAT 57.121 33.333 2.52 0.00 0.00 2.29
2102 2988 8.687292 TGGGTAGTAACATAGAGTAGTACATG 57.313 38.462 2.52 0.50 0.00 3.21
2103 2989 8.277197 TGGGTAGTAACATAGAGTAGTACATGT 58.723 37.037 2.69 2.69 33.12 3.21
2104 2990 9.129532 GGGTAGTAACATAGAGTAGTACATGTT 57.870 37.037 16.99 16.99 42.57 2.71
2134 3027 8.384718 ACTCTATGTTAGTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 33.22 4.61
2135 3028 8.515927 TCTATGTTAGTACCTCTATAGTGGGA 57.484 38.462 21.82 13.09 33.22 4.37
2145 3038 9.531158 GTACCTCTATAGTGGGAAGTAACATAT 57.469 37.037 21.82 2.54 33.22 1.78
2150 3049 9.871175 TCTATAGTGGGAAGTAACATATGTGTA 57.129 33.333 9.63 1.65 37.67 2.90
2154 3053 8.370266 AGTGGGAAGTAACATATGTGTAGTAA 57.630 34.615 9.63 0.00 37.67 2.24
2161 3060 9.443323 AAGTAACATATGTGTAGTAACATGCAA 57.557 29.630 9.63 0.00 40.93 4.08
2162 3061 8.879759 AGTAACATATGTGTAGTAACATGCAAC 58.120 33.333 9.63 0.00 40.93 4.17
2163 3062 7.680442 AACATATGTGTAGTAACATGCAACA 57.320 32.000 9.63 0.00 40.93 3.33
2178 3314 7.760131 ACATGCAACACTTCATTTATTATGC 57.240 32.000 0.00 0.00 0.00 3.14
2199 3335 5.744171 TGCTATAGTTTCATCTTGCCTTGA 58.256 37.500 0.84 0.00 0.00 3.02
2200 3336 6.359804 TGCTATAGTTTCATCTTGCCTTGAT 58.640 36.000 0.84 0.00 0.00 2.57
2202 3338 8.159447 TGCTATAGTTTCATCTTGCCTTGATAT 58.841 33.333 0.84 0.00 0.00 1.63
2203 3339 8.449397 GCTATAGTTTCATCTTGCCTTGATATG 58.551 37.037 0.84 0.00 0.00 1.78
2246 3382 9.264719 CTAGCTAAGTTACTAGAACTACCTCTC 57.735 40.741 0.00 0.00 38.53 3.20
2248 3384 7.989170 AGCTAAGTTACTAGAACTACCTCTCTC 59.011 40.741 0.00 0.00 0.00 3.20
2249 3385 7.989170 GCTAAGTTACTAGAACTACCTCTCTCT 59.011 40.741 0.00 0.00 0.00 3.10
2271 3407 7.496920 TCTCTTCATTAACTCATTGCCACATAG 59.503 37.037 0.00 0.00 0.00 2.23
2272 3408 7.337938 TCTTCATTAACTCATTGCCACATAGA 58.662 34.615 0.00 0.00 0.00 1.98
2291 3427 4.574599 AGACAAATTTGCTGAGTTGGAC 57.425 40.909 18.12 0.00 0.00 4.02
2293 3429 4.646492 AGACAAATTTGCTGAGTTGGACTT 59.354 37.500 18.12 0.00 0.00 3.01
2296 3432 5.105392 ACAAATTTGCTGAGTTGGACTTGAA 60.105 36.000 18.12 0.00 0.00 2.69
2302 3438 3.498777 GCTGAGTTGGACTTGAAGTTACC 59.501 47.826 0.00 0.00 0.00 2.85
2313 3449 4.989168 ACTTGAAGTTACCGCTGAAGTTAG 59.011 41.667 0.00 0.00 0.00 2.34
2317 3453 2.233186 AGTTACCGCTGAAGTTAGTCCC 59.767 50.000 0.00 0.00 0.00 4.46
2330 3466 1.848652 TAGTCCCACTGTGGCTAGTC 58.151 55.000 21.47 6.06 35.79 2.59
2331 3467 0.115349 AGTCCCACTGTGGCTAGTCT 59.885 55.000 21.47 8.22 35.79 3.24
2332 3468 0.977395 GTCCCACTGTGGCTAGTCTT 59.023 55.000 21.47 0.00 35.79 3.01
2333 3469 2.176889 GTCCCACTGTGGCTAGTCTTA 58.823 52.381 21.47 0.00 35.79 2.10
2334 3470 2.166664 GTCCCACTGTGGCTAGTCTTAG 59.833 54.545 21.47 4.54 35.79 2.18
2335 3471 1.482593 CCCACTGTGGCTAGTCTTAGG 59.517 57.143 21.47 0.00 35.79 2.69
2336 3472 1.482593 CCACTGTGGCTAGTCTTAGGG 59.517 57.143 14.87 0.00 0.00 3.53
2337 3473 1.482593 CACTGTGGCTAGTCTTAGGGG 59.517 57.143 0.00 0.00 0.00 4.79
2338 3474 1.123928 CTGTGGCTAGTCTTAGGGGG 58.876 60.000 0.00 0.00 0.00 5.40
2339 3475 0.416231 TGTGGCTAGTCTTAGGGGGT 59.584 55.000 0.00 0.00 0.00 4.95
2340 3476 0.831307 GTGGCTAGTCTTAGGGGGTG 59.169 60.000 0.00 0.00 0.00 4.61
2341 3477 0.416231 TGGCTAGTCTTAGGGGGTGT 59.584 55.000 0.00 0.00 0.00 4.16
2342 3478 1.203389 TGGCTAGTCTTAGGGGGTGTT 60.203 52.381 0.00 0.00 0.00 3.32
2343 3479 1.914108 GGCTAGTCTTAGGGGGTGTTT 59.086 52.381 0.00 0.00 0.00 2.83
2344 3480 2.355818 GGCTAGTCTTAGGGGGTGTTTG 60.356 54.545 0.00 0.00 0.00 2.93
2345 3481 2.355818 GCTAGTCTTAGGGGGTGTTTGG 60.356 54.545 0.00 0.00 0.00 3.28
2346 3482 1.829138 AGTCTTAGGGGGTGTTTGGT 58.171 50.000 0.00 0.00 0.00 3.67
2347 3483 2.141067 AGTCTTAGGGGGTGTTTGGTT 58.859 47.619 0.00 0.00 0.00 3.67
2348 3484 2.107726 AGTCTTAGGGGGTGTTTGGTTC 59.892 50.000 0.00 0.00 0.00 3.62
2349 3485 2.136863 TCTTAGGGGGTGTTTGGTTCA 58.863 47.619 0.00 0.00 0.00 3.18
2350 3486 2.107552 TCTTAGGGGGTGTTTGGTTCAG 59.892 50.000 0.00 0.00 0.00 3.02
2351 3487 0.774908 TAGGGGGTGTTTGGTTCAGG 59.225 55.000 0.00 0.00 0.00 3.86
2352 3488 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
2353 3489 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
2354 3490 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
2355 3491 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
2356 3492 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
2357 3493 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
2358 3494 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
2359 3495 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
2360 3496 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
2361 3497 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
2362 3498 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
2363 3499 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
2383 3519 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
2384 3520 4.528987 GTCCCAGAGACTAGAAAAAGTCCT 59.471 45.833 0.00 0.00 45.86 3.85
2385 3521 5.012251 GTCCCAGAGACTAGAAAAAGTCCTT 59.988 44.000 0.00 0.00 45.86 3.36
2386 3522 6.210984 GTCCCAGAGACTAGAAAAAGTCCTTA 59.789 42.308 0.00 0.00 45.86 2.69
2387 3523 6.785963 TCCCAGAGACTAGAAAAAGTCCTTAA 59.214 38.462 0.00 0.00 45.86 1.85
2388 3524 7.291651 TCCCAGAGACTAGAAAAAGTCCTTAAA 59.708 37.037 0.00 0.00 45.86 1.52
2389 3525 7.937394 CCCAGAGACTAGAAAAAGTCCTTAAAA 59.063 37.037 0.00 0.00 45.86 1.52
2390 3526 9.338622 CCAGAGACTAGAAAAAGTCCTTAAAAA 57.661 33.333 0.00 0.00 45.86 1.94
2409 3545 5.462530 AAAAATTCCTAGGAACCAAACGG 57.537 39.130 26.57 0.00 36.91 4.44
2410 3546 2.801077 ATTCCTAGGAACCAAACGGG 57.199 50.000 26.57 0.00 44.81 5.28
2411 3547 1.732117 TTCCTAGGAACCAAACGGGA 58.268 50.000 20.72 0.00 41.15 5.14
2412 3548 1.272807 TCCTAGGAACCAAACGGGAG 58.727 55.000 9.71 0.00 41.15 4.30
2413 3549 0.252197 CCTAGGAACCAAACGGGAGG 59.748 60.000 1.05 0.00 41.15 4.30
2414 3550 0.252197 CTAGGAACCAAACGGGAGGG 59.748 60.000 0.00 0.00 41.15 4.30
2415 3551 0.178897 TAGGAACCAAACGGGAGGGA 60.179 55.000 0.00 0.00 41.15 4.20
2416 3552 1.303074 GGAACCAAACGGGAGGGAC 60.303 63.158 0.00 0.00 41.15 4.46
2418 3554 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
2419 3555 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
2420 3556 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
2421 3557 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
2422 3558 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
2423 3559 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
2424 3560 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
2425 3561 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
2426 3562 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
2427 3563 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
2428 3564 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
2429 3565 2.026169 GGGAGGGACTTTTTCTACAGGG 60.026 54.545 0.00 0.00 41.55 4.45
2430 3566 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
2431 3567 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
2432 3568 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
2433 3569 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
2434 3570 5.160386 AGGGACTTTTTCTACAGGGACTAA 58.840 41.667 0.00 0.00 28.08 2.24
2435 3571 5.609708 AGGGACTTTTTCTACAGGGACTAAA 59.390 40.000 0.00 0.00 28.08 1.85
2436 3572 6.102174 AGGGACTTTTTCTACAGGGACTAAAA 59.898 38.462 0.00 0.00 28.08 1.52
2437 3573 6.774170 GGGACTTTTTCTACAGGGACTAAAAA 59.226 38.462 0.00 0.00 36.02 1.94
2490 3626 5.470047 GTCTCTGGGACTAGAAAAAGTCA 57.530 43.478 0.00 0.00 46.40 3.41
2491 3627 6.043854 GTCTCTGGGACTAGAAAAAGTCAT 57.956 41.667 0.00 0.00 46.40 3.06
2492 3628 7.171630 GTCTCTGGGACTAGAAAAAGTCATA 57.828 40.000 0.00 0.00 46.40 2.15
2493 3629 7.262048 GTCTCTGGGACTAGAAAAAGTCATAG 58.738 42.308 0.00 4.06 46.40 2.23
2494 3630 6.381420 TCTCTGGGACTAGAAAAAGTCATAGG 59.619 42.308 0.00 0.23 46.40 2.57
2495 3631 6.261435 TCTGGGACTAGAAAAAGTCATAGGA 58.739 40.000 0.00 0.00 46.40 2.94
2496 3632 6.154706 TCTGGGACTAGAAAAAGTCATAGGAC 59.845 42.308 0.00 0.00 46.40 3.85
2509 3645 3.935828 GTCATAGGACTTCTGAACCAAGC 59.064 47.826 0.00 0.00 40.99 4.01
2510 3646 3.582647 TCATAGGACTTCTGAACCAAGCA 59.417 43.478 0.58 0.00 0.00 3.91
2511 3647 2.262423 AGGACTTCTGAACCAAGCAC 57.738 50.000 0.58 0.00 0.00 4.40
2512 3648 1.202818 AGGACTTCTGAACCAAGCACC 60.203 52.381 0.58 0.00 0.00 5.01
2513 3649 1.239347 GACTTCTGAACCAAGCACCC 58.761 55.000 0.00 0.00 0.00 4.61
2521 3657 1.073284 GAACCAAGCACCCCTTAGACA 59.927 52.381 0.00 0.00 31.00 3.41
2615 4021 3.726144 GCAGAGCCCTCTTGCCCT 61.726 66.667 0.00 0.00 37.98 5.19
2622 4028 0.548510 GCCCTCTTGCCCTGTATTCT 59.451 55.000 0.00 0.00 0.00 2.40
2623 4029 1.475930 GCCCTCTTGCCCTGTATTCTC 60.476 57.143 0.00 0.00 0.00 2.87
2626 4032 3.432890 CCCTCTTGCCCTGTATTCTCTTC 60.433 52.174 0.00 0.00 0.00 2.87
2650 4056 0.248907 CTCGGTTCGCGTGTGGATAT 60.249 55.000 5.77 0.00 0.00 1.63
2654 4060 1.269621 GGTTCGCGTGTGGATATAGCT 60.270 52.381 5.77 0.00 0.00 3.32
2655 4061 1.787155 GTTCGCGTGTGGATATAGCTG 59.213 52.381 5.77 0.00 0.00 4.24
2657 4063 0.032130 CGCGTGTGGATATAGCTGGT 59.968 55.000 0.00 0.00 0.00 4.00
2658 4064 1.502231 GCGTGTGGATATAGCTGGTG 58.498 55.000 0.00 0.00 0.00 4.17
2659 4065 1.068588 GCGTGTGGATATAGCTGGTGA 59.931 52.381 0.00 0.00 0.00 4.02
2698 4182 0.819666 GGCCCTAGGATTTTCAGCGG 60.820 60.000 11.48 0.00 0.00 5.52
2729 4213 4.892379 CGCATGCCGACCATTGCG 62.892 66.667 13.15 1.57 41.39 4.85
2730 4214 3.814268 GCATGCCGACCATTGCGT 61.814 61.111 6.36 0.00 29.71 5.24
2731 4215 2.468670 GCATGCCGACCATTGCGTA 61.469 57.895 6.36 0.00 29.71 4.42
2732 4216 1.351707 CATGCCGACCATTGCGTAC 59.648 57.895 0.00 0.00 29.71 3.67
2733 4217 1.817941 ATGCCGACCATTGCGTACC 60.818 57.895 0.00 0.00 0.00 3.34
2734 4218 2.125269 GCCGACCATTGCGTACCT 60.125 61.111 0.00 0.00 0.00 3.08
2735 4219 2.461110 GCCGACCATTGCGTACCTG 61.461 63.158 0.00 0.00 0.00 4.00
2736 4220 1.079405 CCGACCATTGCGTACCTGT 60.079 57.895 0.00 0.00 0.00 4.00
2737 4221 1.358725 CCGACCATTGCGTACCTGTG 61.359 60.000 0.00 0.00 0.00 3.66
2738 4222 1.358725 CGACCATTGCGTACCTGTGG 61.359 60.000 0.00 0.00 36.06 4.17
2739 4223 1.644786 GACCATTGCGTACCTGTGGC 61.645 60.000 0.00 0.00 33.24 5.01
2740 4224 1.377202 CCATTGCGTACCTGTGGCT 60.377 57.895 0.00 0.00 0.00 4.75
2741 4225 1.647545 CCATTGCGTACCTGTGGCTG 61.648 60.000 0.00 0.00 0.00 4.85
2742 4226 0.955428 CATTGCGTACCTGTGGCTGT 60.955 55.000 0.00 0.00 0.00 4.40
2743 4227 0.955428 ATTGCGTACCTGTGGCTGTG 60.955 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.117171 GCTGCTGACACCAGAGCG 61.117 66.667 1.76 0.00 43.02 5.03
82 83 3.241530 TGGAGGAGGTGCAGCGTT 61.242 61.111 10.78 0.00 0.00 4.84
145 146 1.628340 ACGACTGACATTTGGATCCCA 59.372 47.619 9.90 0.00 0.00 4.37
146 147 2.009774 CACGACTGACATTTGGATCCC 58.990 52.381 9.90 0.00 0.00 3.85
202 204 3.054503 GAGTGGCACTGGCAGCAG 61.055 66.667 27.45 8.91 43.71 4.24
300 322 1.741525 GCAACAGCAAAGCCAAGGA 59.258 52.632 0.00 0.00 0.00 3.36
374 434 2.202797 CATCTCGCGACCCACTGG 60.203 66.667 3.71 0.00 37.80 4.00
378 438 4.770362 TCCCCATCTCGCGACCCA 62.770 66.667 3.71 0.00 0.00 4.51
510 600 2.150719 TCATCCAACCACCCACGGT 61.151 57.895 0.00 0.00 42.71 4.83
512 602 1.674322 GGTCATCCAACCACCCACG 60.674 63.158 0.00 0.00 39.27 4.94
519 609 3.124921 CGTGGCGGTCATCCAACC 61.125 66.667 0.00 0.00 35.01 3.77
554 644 3.788766 CCTCGCGTGCCTTTTCGG 61.789 66.667 5.77 0.00 0.00 4.30
555 645 4.445545 GCCTCGCGTGCCTTTTCG 62.446 66.667 5.77 0.00 0.00 3.46
577 667 3.430862 TCGGCATGGACGCAAAGC 61.431 61.111 0.00 0.00 32.07 3.51
578 668 2.480555 GTCGGCATGGACGCAAAG 59.519 61.111 0.00 0.00 32.07 2.77
584 674 1.063469 CCAAAATACGTCGGCATGGAC 59.937 52.381 0.00 0.00 0.00 4.02
585 675 1.374560 CCAAAATACGTCGGCATGGA 58.625 50.000 0.00 0.00 0.00 3.41
586 676 0.248458 GCCAAAATACGTCGGCATGG 60.248 55.000 0.00 0.00 44.25 3.66
587 677 0.248458 GGCCAAAATACGTCGGCATG 60.248 55.000 0.00 0.00 46.75 4.06
588 678 1.711060 CGGCCAAAATACGTCGGCAT 61.711 55.000 2.24 0.00 46.75 4.40
589 679 2.392181 CGGCCAAAATACGTCGGCA 61.392 57.895 2.24 0.00 46.75 5.69
590 680 2.401990 CGGCCAAAATACGTCGGC 59.598 61.111 2.24 0.00 44.10 5.54
591 681 1.913451 TTGCGGCCAAAATACGTCGG 61.913 55.000 2.24 0.00 0.00 4.79
592 682 0.110147 TTTGCGGCCAAAATACGTCG 60.110 50.000 2.24 0.00 37.97 5.12
593 683 1.917303 CATTTGCGGCCAAAATACGTC 59.083 47.619 11.93 0.00 43.58 4.34
594 684 1.989430 CATTTGCGGCCAAAATACGT 58.011 45.000 11.93 0.00 43.58 3.57
595 685 0.644843 GCATTTGCGGCCAAAATACG 59.355 50.000 11.93 4.18 43.58 3.06
596 686 1.719600 TGCATTTGCGGCCAAAATAC 58.280 45.000 11.93 8.20 43.58 1.89
597 687 2.168106 AGATGCATTTGCGGCCAAAATA 59.832 40.909 11.93 0.67 43.58 1.40
598 688 1.065998 AGATGCATTTGCGGCCAAAAT 60.066 42.857 2.24 5.49 43.58 1.82
599 689 0.321021 AGATGCATTTGCGGCCAAAA 59.679 45.000 2.24 2.83 43.58 2.44
600 690 0.390078 CAGATGCATTTGCGGCCAAA 60.390 50.000 2.24 0.00 45.83 3.28
601 691 1.215912 CAGATGCATTTGCGGCCAA 59.784 52.632 2.24 0.00 45.83 4.52
602 692 2.886610 CAGATGCATTTGCGGCCA 59.113 55.556 2.24 0.00 45.83 5.36
603 693 2.584143 GCAGATGCATTTGCGGCC 60.584 61.111 24.43 1.89 45.83 6.13
614 704 2.792290 CTTCGCGTCCGTGCAGATG 61.792 63.158 5.77 0.00 35.54 2.90
615 705 2.507102 CTTCGCGTCCGTGCAGAT 60.507 61.111 5.77 0.00 35.54 2.90
628 718 0.515717 CTTAAAACGCGTCCGCTTCG 60.516 55.000 14.44 0.00 39.32 3.79
629 719 0.509929 ACTTAAAACGCGTCCGCTTC 59.490 50.000 14.44 0.00 39.32 3.86
630 720 0.939419 AACTTAAAACGCGTCCGCTT 59.061 45.000 14.44 6.64 39.32 4.68
631 721 0.939419 AAACTTAAAACGCGTCCGCT 59.061 45.000 14.44 0.00 39.32 5.52
632 722 1.039487 CAAACTTAAAACGCGTCCGC 58.961 50.000 14.44 0.68 38.22 5.54
633 723 2.649140 TCAAACTTAAAACGCGTCCG 57.351 45.000 14.44 1.64 41.14 4.79
634 724 3.596562 CGATTCAAACTTAAAACGCGTCC 59.403 43.478 14.44 0.00 0.00 4.79
635 725 3.596562 CCGATTCAAACTTAAAACGCGTC 59.403 43.478 14.44 0.00 0.00 5.19
636 726 3.547601 CCGATTCAAACTTAAAACGCGT 58.452 40.909 5.58 5.58 0.00 6.01
637 727 2.337352 GCCGATTCAAACTTAAAACGCG 59.663 45.455 3.53 3.53 0.00 6.01
638 728 2.337352 CGCCGATTCAAACTTAAAACGC 59.663 45.455 0.00 0.00 0.00 4.84
639 729 2.337352 GCGCCGATTCAAACTTAAAACG 59.663 45.455 0.00 0.00 0.00 3.60
640 730 2.337352 CGCGCCGATTCAAACTTAAAAC 59.663 45.455 0.00 0.00 0.00 2.43
641 731 2.031857 ACGCGCCGATTCAAACTTAAAA 60.032 40.909 5.73 0.00 0.00 1.52
642 732 1.532007 ACGCGCCGATTCAAACTTAAA 59.468 42.857 5.73 0.00 0.00 1.52
643 733 1.149987 ACGCGCCGATTCAAACTTAA 58.850 45.000 5.73 0.00 0.00 1.85
644 734 1.149987 AACGCGCCGATTCAAACTTA 58.850 45.000 5.73 0.00 0.00 2.24
645 735 0.309612 AAACGCGCCGATTCAAACTT 59.690 45.000 5.73 0.00 0.00 2.66
646 736 0.385473 CAAACGCGCCGATTCAAACT 60.385 50.000 5.73 0.00 0.00 2.66
647 737 0.384974 TCAAACGCGCCGATTCAAAC 60.385 50.000 5.73 0.00 0.00 2.93
648 738 0.384974 GTCAAACGCGCCGATTCAAA 60.385 50.000 5.73 0.00 0.00 2.69
649 739 1.205568 GTCAAACGCGCCGATTCAA 59.794 52.632 5.73 0.00 0.00 2.69
650 740 2.673114 GGTCAAACGCGCCGATTCA 61.673 57.895 5.73 0.00 0.00 2.57
651 741 2.097728 GGTCAAACGCGCCGATTC 59.902 61.111 5.73 0.00 0.00 2.52
652 742 2.358247 AGGTCAAACGCGCCGATT 60.358 55.556 5.73 0.00 0.00 3.34
653 743 2.813908 GAGGTCAAACGCGCCGAT 60.814 61.111 5.73 0.00 0.00 4.18
654 744 3.583276 ATGAGGTCAAACGCGCCGA 62.583 57.895 5.73 0.00 0.00 5.54
655 745 2.182614 AAATGAGGTCAAACGCGCCG 62.183 55.000 5.73 0.00 0.00 6.46
656 746 0.039527 AAAATGAGGTCAAACGCGCC 60.040 50.000 5.73 0.00 0.00 6.53
657 747 1.451651 CAAAAATGAGGTCAAACGCGC 59.548 47.619 5.73 0.00 0.00 6.86
658 748 2.719046 GACAAAAATGAGGTCAAACGCG 59.281 45.455 3.53 3.53 0.00 6.01
659 749 3.049912 GGACAAAAATGAGGTCAAACGC 58.950 45.455 0.00 0.00 33.26 4.84
660 750 4.041723 GTGGACAAAAATGAGGTCAAACG 58.958 43.478 0.00 0.00 33.26 3.60
661 751 4.803613 GTGTGGACAAAAATGAGGTCAAAC 59.196 41.667 0.00 0.00 33.26 2.93
662 752 4.142049 GGTGTGGACAAAAATGAGGTCAAA 60.142 41.667 0.00 0.00 33.26 2.69
663 753 3.383185 GGTGTGGACAAAAATGAGGTCAA 59.617 43.478 0.00 0.00 33.26 3.18
664 754 2.955660 GGTGTGGACAAAAATGAGGTCA 59.044 45.455 0.00 0.00 33.26 4.02
665 755 2.031157 CGGTGTGGACAAAAATGAGGTC 60.031 50.000 0.00 0.00 0.00 3.85
666 756 1.953686 CGGTGTGGACAAAAATGAGGT 59.046 47.619 0.00 0.00 0.00 3.85
667 757 2.031157 GTCGGTGTGGACAAAAATGAGG 60.031 50.000 0.00 0.00 36.91 3.86
668 758 2.031157 GGTCGGTGTGGACAAAAATGAG 60.031 50.000 0.00 0.00 38.70 2.90
669 759 1.950909 GGTCGGTGTGGACAAAAATGA 59.049 47.619 0.00 0.00 38.70 2.57
670 760 1.953686 AGGTCGGTGTGGACAAAAATG 59.046 47.619 0.00 0.00 38.70 2.32
671 761 2.358322 AGGTCGGTGTGGACAAAAAT 57.642 45.000 0.00 0.00 38.70 1.82
672 762 3.207778 CTTAGGTCGGTGTGGACAAAAA 58.792 45.455 0.00 0.00 38.70 1.94
673 763 2.841215 CTTAGGTCGGTGTGGACAAAA 58.159 47.619 0.00 0.00 38.70 2.44
674 764 1.541670 GCTTAGGTCGGTGTGGACAAA 60.542 52.381 0.00 0.00 38.70 2.83
675 765 0.034337 GCTTAGGTCGGTGTGGACAA 59.966 55.000 0.00 0.00 38.70 3.18
676 766 1.669440 GCTTAGGTCGGTGTGGACA 59.331 57.895 0.00 0.00 38.70 4.02
677 767 1.445582 CGCTTAGGTCGGTGTGGAC 60.446 63.158 0.00 0.00 36.18 4.02
678 768 1.180456 TTCGCTTAGGTCGGTGTGGA 61.180 55.000 0.00 0.00 0.00 4.02
679 769 0.108329 ATTCGCTTAGGTCGGTGTGG 60.108 55.000 0.00 0.00 0.00 4.17
680 770 0.999406 CATTCGCTTAGGTCGGTGTG 59.001 55.000 0.00 0.00 0.00 3.82
681 771 0.739813 GCATTCGCTTAGGTCGGTGT 60.740 55.000 0.00 0.00 34.30 4.16
682 772 0.739462 TGCATTCGCTTAGGTCGGTG 60.739 55.000 0.00 0.00 39.64 4.94
683 773 0.460284 CTGCATTCGCTTAGGTCGGT 60.460 55.000 0.00 0.00 39.64 4.69
684 774 1.154205 CCTGCATTCGCTTAGGTCGG 61.154 60.000 0.00 0.00 39.64 4.79
685 775 1.766143 GCCTGCATTCGCTTAGGTCG 61.766 60.000 0.00 0.00 39.64 4.79
686 776 1.766143 CGCCTGCATTCGCTTAGGTC 61.766 60.000 0.00 0.00 39.64 3.85
687 777 1.815421 CGCCTGCATTCGCTTAGGT 60.815 57.895 0.00 0.00 39.64 3.08
688 778 2.537560 CCGCCTGCATTCGCTTAGG 61.538 63.158 2.61 0.00 39.64 2.69
689 779 1.521457 TCCGCCTGCATTCGCTTAG 60.521 57.895 2.61 0.00 39.64 2.18
690 780 1.813753 GTCCGCCTGCATTCGCTTA 60.814 57.895 2.61 0.00 39.64 3.09
691 781 3.127533 GTCCGCCTGCATTCGCTT 61.128 61.111 2.61 0.00 39.64 4.68
694 784 2.182614 AAAACGTCCGCCTGCATTCG 62.183 55.000 0.00 0.00 0.00 3.34
695 785 0.729140 CAAAACGTCCGCCTGCATTC 60.729 55.000 0.00 0.00 0.00 2.67
696 786 1.285641 CAAAACGTCCGCCTGCATT 59.714 52.632 0.00 0.00 0.00 3.56
697 787 2.625823 CCAAAACGTCCGCCTGCAT 61.626 57.895 0.00 0.00 0.00 3.96
698 788 3.283684 CCAAAACGTCCGCCTGCA 61.284 61.111 0.00 0.00 0.00 4.41
699 789 2.253414 GATCCAAAACGTCCGCCTGC 62.253 60.000 0.00 0.00 0.00 4.85
700 790 1.794222 GATCCAAAACGTCCGCCTG 59.206 57.895 0.00 0.00 0.00 4.85
701 791 1.740296 CGATCCAAAACGTCCGCCT 60.740 57.895 0.00 0.00 0.00 5.52
702 792 2.782615 CGATCCAAAACGTCCGCC 59.217 61.111 0.00 0.00 0.00 6.13
703 793 2.097728 GCGATCCAAAACGTCCGC 59.902 61.111 0.00 0.00 35.91 5.54
704 794 1.419922 CAGCGATCCAAAACGTCCG 59.580 57.895 0.00 0.00 0.00 4.79
705 795 1.134694 GCAGCGATCCAAAACGTCC 59.865 57.895 0.00 0.00 0.00 4.79
706 796 1.225745 CGCAGCGATCCAAAACGTC 60.226 57.895 9.98 0.00 0.00 4.34
707 797 1.897398 GACGCAGCGATCCAAAACGT 61.897 55.000 24.65 0.00 34.58 3.99
708 798 1.225745 GACGCAGCGATCCAAAACG 60.226 57.895 24.65 0.00 0.00 3.60
709 799 1.225745 CGACGCAGCGATCCAAAAC 60.226 57.895 24.65 1.36 0.00 2.43
710 800 2.387445 CCGACGCAGCGATCCAAAA 61.387 57.895 24.65 0.00 0.00 2.44
711 801 2.813474 CCGACGCAGCGATCCAAA 60.813 61.111 24.65 0.00 0.00 3.28
712 802 3.699955 CTCCGACGCAGCGATCCAA 62.700 63.158 24.65 1.53 0.00 3.53
713 803 4.193334 CTCCGACGCAGCGATCCA 62.193 66.667 24.65 1.17 0.00 3.41
714 804 3.701604 AACTCCGACGCAGCGATCC 62.702 63.158 24.65 9.13 0.00 3.36
715 805 2.202623 AACTCCGACGCAGCGATC 60.203 61.111 24.65 14.16 0.00 3.69
716 806 2.507102 CAACTCCGACGCAGCGAT 60.507 61.111 24.65 5.58 0.00 4.58
719 809 3.482783 GAGCAACTCCGACGCAGC 61.483 66.667 0.00 0.00 0.00 5.25
720 810 0.109272 TAAGAGCAACTCCGACGCAG 60.109 55.000 0.00 0.00 0.00 5.18
721 811 0.530744 ATAAGAGCAACTCCGACGCA 59.469 50.000 0.00 0.00 0.00 5.24
722 812 1.201343 GATAAGAGCAACTCCGACGC 58.799 55.000 0.00 0.00 0.00 5.19
723 813 1.405821 AGGATAAGAGCAACTCCGACG 59.594 52.381 0.00 0.00 32.87 5.12
724 814 2.691011 AGAGGATAAGAGCAACTCCGAC 59.309 50.000 0.00 0.00 32.87 4.79
725 815 3.019799 AGAGGATAAGAGCAACTCCGA 57.980 47.619 0.00 0.00 32.87 4.55
726 816 6.767524 ATATAGAGGATAAGAGCAACTCCG 57.232 41.667 0.00 0.00 32.87 4.63
730 820 9.825109 GGGATTAATATAGAGGATAAGAGCAAC 57.175 37.037 0.00 0.00 0.00 4.17
731 821 9.560860 TGGGATTAATATAGAGGATAAGAGCAA 57.439 33.333 0.00 0.00 0.00 3.91
732 822 8.982723 GTGGGATTAATATAGAGGATAAGAGCA 58.017 37.037 0.00 0.00 0.00 4.26
733 823 9.207868 AGTGGGATTAATATAGAGGATAAGAGC 57.792 37.037 0.00 0.00 0.00 4.09
746 836 9.440761 GGAGACTATCCATAGTGGGATTAATAT 57.559 37.037 3.88 0.00 45.42 1.28
747 837 8.840200 GGAGACTATCCATAGTGGGATTAATA 57.160 38.462 3.88 0.00 45.42 0.98
748 838 7.741554 GGAGACTATCCATAGTGGGATTAAT 57.258 40.000 3.88 0.00 45.42 1.40
762 852 5.648335 GCAACCGCACTAGGAGACTATCC 62.648 56.522 0.00 0.00 43.05 2.59
763 853 2.544069 GCAACCGCACTAGGAGACTATC 60.544 54.545 0.00 0.00 39.34 2.08
764 854 1.409427 GCAACCGCACTAGGAGACTAT 59.591 52.381 0.00 0.00 39.34 2.12
765 855 0.815734 GCAACCGCACTAGGAGACTA 59.184 55.000 0.00 0.00 39.20 2.59
766 856 1.592223 GCAACCGCACTAGGAGACT 59.408 57.895 0.00 0.00 40.99 3.24
767 857 1.805945 CGCAACCGCACTAGGAGAC 60.806 63.158 0.00 0.00 38.40 3.36
768 858 2.571757 CGCAACCGCACTAGGAGA 59.428 61.111 0.00 0.00 38.40 3.71
911 1001 2.202743 GCATGCGTAGACTCGGCA 60.203 61.111 0.00 3.16 0.00 5.69
912 1002 2.202743 TGCATGCGTAGACTCGGC 60.203 61.111 14.09 0.00 0.00 5.54
972 1067 4.847367 GGCAGGGGCAGGGGAATG 62.847 72.222 0.00 0.00 43.71 2.67
985 1080 9.041354 AGTTATATATAGGAGGAAGAAAGGCAG 57.959 37.037 0.00 0.00 0.00 4.85
987 1082 8.261522 CCAGTTATATATAGGAGGAAGAAAGGC 58.738 40.741 0.00 0.00 0.00 4.35
989 1084 8.261522 GGCCAGTTATATATAGGAGGAAGAAAG 58.738 40.741 0.00 0.00 0.00 2.62
990 1085 7.182206 GGGCCAGTTATATATAGGAGGAAGAAA 59.818 40.741 4.39 0.00 0.00 2.52
991 1086 6.672657 GGGCCAGTTATATATAGGAGGAAGAA 59.327 42.308 4.39 0.00 0.00 2.52
992 1087 6.009750 AGGGCCAGTTATATATAGGAGGAAGA 60.010 42.308 6.18 0.00 0.00 2.87
993 1088 6.206042 AGGGCCAGTTATATATAGGAGGAAG 58.794 44.000 6.18 0.00 0.00 3.46
1023 1118 2.427245 CGGCGATGGAAGAGGAGGT 61.427 63.158 0.00 0.00 0.00 3.85
1228 1351 1.153745 GTTGTCATCGAGCGCCTCT 60.154 57.895 2.29 0.00 0.00 3.69
1711 2324 1.026718 GGTCTTGCATGGGAACTCGG 61.027 60.000 0.00 0.00 0.00 4.63
1799 2453 1.064758 TCAAAATCCCATAGCTGGCGT 60.065 47.619 0.00 0.00 41.64 5.68
1982 2867 1.536331 GCATGTTTGGGCAAAATGTGG 59.464 47.619 0.00 0.00 31.33 4.17
1983 2868 2.031857 GTGCATGTTTGGGCAAAATGTG 60.032 45.455 0.00 0.00 42.45 3.21
1984 2869 2.220313 GTGCATGTTTGGGCAAAATGT 58.780 42.857 0.00 0.00 42.45 2.71
2028 2914 4.180057 CAACATGTCTGACCTAGAGAAGC 58.820 47.826 0.00 0.00 35.70 3.86
2071 2957 6.235231 ACTCTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
2074 2960 9.128404 TGTACTACTCTATGTTACTACCCATTG 57.872 37.037 0.00 0.00 0.00 2.82
2109 3002 8.604184 TCCCACTATAGAGGTACTAACATAGAG 58.396 40.741 14.29 0.00 41.55 2.43
2110 3003 8.515927 TCCCACTATAGAGGTACTAACATAGA 57.484 38.462 14.29 0.00 41.55 1.98
2119 3012 7.836479 ATGTTACTTCCCACTATAGAGGTAC 57.164 40.000 14.29 4.44 0.00 3.34
2126 3019 9.650714 ACTACACATATGTTACTTCCCACTATA 57.349 33.333 5.37 0.00 40.48 1.31
2132 3025 9.042008 CATGTTACTACACATATGTTACTTCCC 57.958 37.037 5.37 0.00 40.48 3.97
2134 3027 9.093970 TGCATGTTACTACACATATGTTACTTC 57.906 33.333 5.37 0.00 40.48 3.01
2135 3028 9.443323 TTGCATGTTACTACACATATGTTACTT 57.557 29.630 5.37 0.00 40.48 2.24
2145 3038 5.119694 TGAAGTGTTGCATGTTACTACACA 58.880 37.500 15.74 0.00 43.34 3.72
2154 3053 7.549839 AGCATAATAAATGAAGTGTTGCATGT 58.450 30.769 0.00 0.00 0.00 3.21
2176 3075 5.744171 TCAAGGCAAGATGAAACTATAGCA 58.256 37.500 0.00 0.00 0.00 3.49
2178 3314 9.499479 ACATATCAAGGCAAGATGAAACTATAG 57.501 33.333 0.00 0.00 0.00 1.31
2184 3320 5.945191 TCACACATATCAAGGCAAGATGAAA 59.055 36.000 2.43 0.00 0.00 2.69
2185 3321 5.499313 TCACACATATCAAGGCAAGATGAA 58.501 37.500 2.43 0.00 0.00 2.57
2190 3326 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
2195 3331 9.371136 AGTTACTGTAACATCACACATATCAAG 57.629 33.333 27.12 0.00 41.07 3.02
2199 3335 8.696374 AGCTAGTTACTGTAACATCACACATAT 58.304 33.333 27.12 9.43 41.07 1.78
2200 3336 8.063200 AGCTAGTTACTGTAACATCACACATA 57.937 34.615 27.12 11.12 41.07 2.29
2202 3338 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
2203 3339 8.027771 ACTTAGCTAGTTACTGTAACATCACAC 58.972 37.037 27.12 13.16 41.07 3.82
2235 3371 8.057536 TGAGTTAATGAAGAGAGAGGTAGTTC 57.942 38.462 0.00 0.00 0.00 3.01
2236 3372 8.602472 ATGAGTTAATGAAGAGAGAGGTAGTT 57.398 34.615 0.00 0.00 0.00 2.24
2246 3382 5.885230 TGTGGCAATGAGTTAATGAAGAG 57.115 39.130 0.00 0.00 0.00 2.85
2248 3384 7.066163 TGTCTATGTGGCAATGAGTTAATGAAG 59.934 37.037 0.00 0.00 0.00 3.02
2249 3385 6.883756 TGTCTATGTGGCAATGAGTTAATGAA 59.116 34.615 0.00 0.00 0.00 2.57
2271 3407 4.574599 AGTCCAACTCAGCAAATTTGTC 57.425 40.909 19.03 11.45 0.00 3.18
2272 3408 4.402155 TCAAGTCCAACTCAGCAAATTTGT 59.598 37.500 19.03 3.98 0.00 2.83
2291 3427 4.989168 ACTAACTTCAGCGGTAACTTCAAG 59.011 41.667 0.00 0.00 0.00 3.02
2293 3429 4.553323 GACTAACTTCAGCGGTAACTTCA 58.447 43.478 0.00 0.00 0.00 3.02
2296 3432 2.233186 GGGACTAACTTCAGCGGTAACT 59.767 50.000 0.00 0.00 0.00 2.24
2302 3438 1.000955 ACAGTGGGACTAACTTCAGCG 59.999 52.381 0.00 0.00 0.00 5.18
2313 3449 0.977395 AAGACTAGCCACAGTGGGAC 59.023 55.000 21.77 5.38 38.19 4.46
2317 3453 1.482593 CCCCTAAGACTAGCCACAGTG 59.517 57.143 0.00 0.00 0.00 3.66
2330 3466 2.514803 CTGAACCAAACACCCCCTAAG 58.485 52.381 0.00 0.00 0.00 2.18
2331 3467 1.146152 CCTGAACCAAACACCCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
2332 3468 0.774908 CCTGAACCAAACACCCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
2333 3469 1.541672 CCTGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
2334 3470 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
2335 3471 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
2336 3472 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
2337 3473 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
2338 3474 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
2339 3475 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
2340 3476 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
2361 3497 4.528987 AGGACTTTTTCTAGTCTCTGGGAC 59.471 45.833 0.00 0.00 43.26 4.46
2362 3498 4.753186 AGGACTTTTTCTAGTCTCTGGGA 58.247 43.478 0.00 0.00 43.26 4.37
2363 3499 5.491323 AAGGACTTTTTCTAGTCTCTGGG 57.509 43.478 0.00 0.00 43.26 4.45
2364 3500 8.904099 TTTTAAGGACTTTTTCTAGTCTCTGG 57.096 34.615 0.00 0.00 43.26 3.86
2387 3523 4.282449 CCCGTTTGGTTCCTAGGAATTTTT 59.718 41.667 26.74 0.00 36.45 1.94
2388 3524 3.830178 CCCGTTTGGTTCCTAGGAATTTT 59.170 43.478 26.74 0.00 36.45 1.82
2389 3525 3.074836 TCCCGTTTGGTTCCTAGGAATTT 59.925 43.478 26.74 0.00 36.45 1.82
2390 3526 2.645797 TCCCGTTTGGTTCCTAGGAATT 59.354 45.455 26.74 0.00 36.45 2.17
2391 3527 2.238898 CTCCCGTTTGGTTCCTAGGAAT 59.761 50.000 26.74 0.00 36.45 3.01
2392 3528 1.626825 CTCCCGTTTGGTTCCTAGGAA 59.373 52.381 20.72 20.72 34.77 3.36
2393 3529 1.272807 CTCCCGTTTGGTTCCTAGGA 58.727 55.000 7.62 7.62 34.77 2.94
2394 3530 0.252197 CCTCCCGTTTGGTTCCTAGG 59.748 60.000 0.82 0.82 34.77 3.02
2395 3531 0.252197 CCCTCCCGTTTGGTTCCTAG 59.748 60.000 0.00 0.00 34.77 3.02
2396 3532 0.178897 TCCCTCCCGTTTGGTTCCTA 60.179 55.000 0.00 0.00 34.77 2.94
2397 3533 1.462627 TCCCTCCCGTTTGGTTCCT 60.463 57.895 0.00 0.00 34.77 3.36
2398 3534 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
2399 3535 0.109913 AAGTCCCTCCCGTTTGGTTC 59.890 55.000 0.00 0.00 34.77 3.62
2400 3536 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
2401 3537 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
2402 3538 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
2403 3539 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
2404 3540 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
2405 3541 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
2406 3542 2.302157 CTGTAGAAAAAGTCCCTCCCGT 59.698 50.000 0.00 0.00 0.00 5.28
2407 3543 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
2408 3544 2.026169 CCCTGTAGAAAAAGTCCCTCCC 60.026 54.545 0.00 0.00 0.00 4.30
2409 3545 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
2410 3546 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
2411 3547 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
2412 3548 5.494390 TTAGTCCCTGTAGAAAAAGTCCC 57.506 43.478 0.00 0.00 0.00 4.46
2413 3549 7.812690 TTTTTAGTCCCTGTAGAAAAAGTCC 57.187 36.000 0.00 0.00 0.00 3.85
2468 3604 5.470047 TGACTTTTTCTAGTCCCAGAGAC 57.530 43.478 0.00 0.00 43.11 3.36
2469 3605 6.381420 CCTATGACTTTTTCTAGTCCCAGAGA 59.619 42.308 0.00 0.00 43.11 3.10
2470 3606 6.381420 TCCTATGACTTTTTCTAGTCCCAGAG 59.619 42.308 0.00 0.00 43.11 3.35
2471 3607 6.154706 GTCCTATGACTTTTTCTAGTCCCAGA 59.845 42.308 0.00 0.00 43.11 3.86
2472 3608 6.342111 GTCCTATGACTTTTTCTAGTCCCAG 58.658 44.000 0.00 0.00 43.11 4.45
2473 3609 6.295719 GTCCTATGACTTTTTCTAGTCCCA 57.704 41.667 0.00 0.00 43.11 4.37
2487 3623 3.935828 GCTTGGTTCAGAAGTCCTATGAC 59.064 47.826 0.00 0.00 42.09 3.06
2488 3624 3.582647 TGCTTGGTTCAGAAGTCCTATGA 59.417 43.478 0.00 0.00 0.00 2.15
2489 3625 3.686726 GTGCTTGGTTCAGAAGTCCTATG 59.313 47.826 0.00 0.00 0.00 2.23
2490 3626 3.307762 GGTGCTTGGTTCAGAAGTCCTAT 60.308 47.826 0.00 0.00 0.00 2.57
2491 3627 2.038557 GGTGCTTGGTTCAGAAGTCCTA 59.961 50.000 0.00 0.00 0.00 2.94
2492 3628 1.202818 GGTGCTTGGTTCAGAAGTCCT 60.203 52.381 0.00 0.00 0.00 3.85
2493 3629 1.239347 GGTGCTTGGTTCAGAAGTCC 58.761 55.000 0.00 0.00 0.00 3.85
2494 3630 1.239347 GGGTGCTTGGTTCAGAAGTC 58.761 55.000 0.00 0.00 0.00 3.01
2495 3631 0.178990 GGGGTGCTTGGTTCAGAAGT 60.179 55.000 0.00 0.00 0.00 3.01
2496 3632 0.111253 AGGGGTGCTTGGTTCAGAAG 59.889 55.000 0.00 0.00 0.00 2.85
2497 3633 0.555769 AAGGGGTGCTTGGTTCAGAA 59.444 50.000 0.00 0.00 0.00 3.02
2498 3634 1.351017 CTAAGGGGTGCTTGGTTCAGA 59.649 52.381 0.00 0.00 0.00 3.27
2499 3635 1.351017 TCTAAGGGGTGCTTGGTTCAG 59.649 52.381 0.00 0.00 0.00 3.02
2500 3636 1.073284 GTCTAAGGGGTGCTTGGTTCA 59.927 52.381 0.00 0.00 0.00 3.18
2501 3637 1.073284 TGTCTAAGGGGTGCTTGGTTC 59.927 52.381 0.00 0.00 0.00 3.62
2502 3638 1.073923 CTGTCTAAGGGGTGCTTGGTT 59.926 52.381 0.00 0.00 0.00 3.67
2503 3639 0.693049 CTGTCTAAGGGGTGCTTGGT 59.307 55.000 0.00 0.00 0.00 3.67
2504 3640 0.984230 TCTGTCTAAGGGGTGCTTGG 59.016 55.000 0.00 0.00 0.00 3.61
2505 3641 2.859165 TTCTGTCTAAGGGGTGCTTG 57.141 50.000 0.00 0.00 0.00 4.01
2506 3642 2.912956 TGATTCTGTCTAAGGGGTGCTT 59.087 45.455 0.00 0.00 0.00 3.91
2507 3643 2.237392 GTGATTCTGTCTAAGGGGTGCT 59.763 50.000 0.00 0.00 0.00 4.40
2508 3644 2.633488 GTGATTCTGTCTAAGGGGTGC 58.367 52.381 0.00 0.00 0.00 5.01
2509 3645 2.418746 CGGTGATTCTGTCTAAGGGGTG 60.419 54.545 0.00 0.00 0.00 4.61
2510 3646 1.831736 CGGTGATTCTGTCTAAGGGGT 59.168 52.381 0.00 0.00 0.00 4.95
2511 3647 2.101582 CTCGGTGATTCTGTCTAAGGGG 59.898 54.545 0.00 0.00 0.00 4.79
2512 3648 2.482142 GCTCGGTGATTCTGTCTAAGGG 60.482 54.545 0.00 0.00 0.00 3.95
2513 3649 2.428890 AGCTCGGTGATTCTGTCTAAGG 59.571 50.000 0.00 0.00 0.00 2.69
2521 3657 1.134965 GTGCTACAGCTCGGTGATTCT 60.135 52.381 2.79 0.00 42.66 2.40
2615 4021 1.202302 CCGAGCTGCGAAGAGAATACA 60.202 52.381 0.00 0.00 44.57 2.29
2622 4028 2.126463 CGAACCGAGCTGCGAAGA 60.126 61.111 0.00 0.00 44.57 2.87
2623 4029 3.843240 GCGAACCGAGCTGCGAAG 61.843 66.667 0.00 0.00 44.57 3.79
2641 4047 4.499183 GCTATCACCAGCTATATCCACAC 58.501 47.826 0.00 0.00 38.57 3.82
2650 4056 2.728180 CGCCGCTATCACCAGCTA 59.272 61.111 0.00 0.00 39.51 3.32
2654 4060 2.588596 CATGCGCCGCTATCACCA 60.589 61.111 11.67 0.00 0.00 4.17
2655 4061 4.017877 GCATGCGCCGCTATCACC 62.018 66.667 11.67 0.00 0.00 4.02
2657 4063 2.968697 CAGCATGCGCCGCTATCA 60.969 61.111 19.62 0.00 37.72 2.15
2713 4197 2.468670 TACGCAATGGTCGGCATGC 61.469 57.895 9.90 9.90 35.49 4.06
2714 4198 1.351707 GTACGCAATGGTCGGCATG 59.648 57.895 0.00 0.00 0.00 4.06
2715 4199 1.817941 GGTACGCAATGGTCGGCAT 60.818 57.895 0.00 0.00 0.00 4.40
2716 4200 2.435234 GGTACGCAATGGTCGGCA 60.435 61.111 0.00 0.00 0.00 5.69
2717 4201 2.125269 AGGTACGCAATGGTCGGC 60.125 61.111 0.00 0.00 0.00 5.54
2718 4202 1.079405 ACAGGTACGCAATGGTCGG 60.079 57.895 0.00 0.00 0.00 4.79
2719 4203 1.358725 CCACAGGTACGCAATGGTCG 61.359 60.000 0.00 0.00 0.00 4.79
2720 4204 1.644786 GCCACAGGTACGCAATGGTC 61.645 60.000 6.10 0.00 32.71 4.02
2721 4205 1.674322 GCCACAGGTACGCAATGGT 60.674 57.895 6.10 0.00 32.71 3.55
2722 4206 1.377202 AGCCACAGGTACGCAATGG 60.377 57.895 0.90 0.90 0.00 3.16
2723 4207 0.955428 ACAGCCACAGGTACGCAATG 60.955 55.000 0.00 0.00 0.00 2.82
2724 4208 0.955428 CACAGCCACAGGTACGCAAT 60.955 55.000 0.00 0.00 0.00 3.56
2725 4209 1.596752 CACAGCCACAGGTACGCAA 60.597 57.895 0.00 0.00 0.00 4.85
2726 4210 2.030412 CACAGCCACAGGTACGCA 59.970 61.111 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.