Multiple sequence alignment - TraesCS2D01G257600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G257600 chr2D 100.000 4438 0 0 1 4438 313633053 313637490 0.000000e+00 8196.0
1 TraesCS2D01G257600 chr2D 93.846 520 28 3 3920 4437 268932806 268933323 0.000000e+00 780.0
2 TraesCS2D01G257600 chr2D 93.032 531 18 2 3927 4438 269362167 269361637 0.000000e+00 758.0
3 TraesCS2D01G257600 chr2D 92.585 499 12 5 3920 4393 313644293 313644791 0.000000e+00 693.0
4 TraesCS2D01G257600 chr2D 97.507 361 9 0 3920 4280 268913570 268913930 6.310000e-173 617.0
5 TraesCS2D01G257600 chr2D 100.000 45 0 0 3924 3968 284722727 284722771 2.840000e-12 84.2
6 TraesCS2D01G257600 chr2A 94.637 1473 69 7 2463 3927 423207332 423205862 0.000000e+00 2274.0
7 TraesCS2D01G257600 chr2A 93.662 710 32 6 888 1594 423208822 423208123 0.000000e+00 1050.0
8 TraesCS2D01G257600 chr2A 90.398 729 51 9 1746 2465 423208131 423207413 0.000000e+00 941.0
9 TraesCS2D01G257600 chr2A 83.834 699 84 20 20 693 423211732 423211038 4.840000e-179 638.0
10 TraesCS2D01G257600 chr2A 86.752 234 29 2 2490 2721 161631466 161631233 4.400000e-65 259.0
11 TraesCS2D01G257600 chr2A 82.449 245 35 8 2483 2722 10505021 10504780 1.620000e-49 207.0
12 TraesCS2D01G257600 chr2A 88.000 100 5 4 3921 4013 294226037 294226136 1.300000e-20 111.0
13 TraesCS2D01G257600 chr2B 93.004 1072 66 6 2720 3786 381297174 381298241 0.000000e+00 1555.0
14 TraesCS2D01G257600 chr2B 95.339 472 22 0 795 1266 381295363 381295834 0.000000e+00 750.0
15 TraesCS2D01G257600 chr2B 88.605 588 57 8 1746 2326 381296502 381297086 0.000000e+00 706.0
16 TraesCS2D01G257600 chr2B 81.422 689 99 19 20 693 381292608 381293282 1.820000e-148 536.0
17 TraesCS2D01G257600 chr2B 90.456 241 23 0 4198 4438 324139304 324139064 7.160000e-83 318.0
18 TraesCS2D01G257600 chr2B 90.456 241 21 2 4198 4437 384963899 384964138 2.580000e-82 316.0
19 TraesCS2D01G257600 chr2B 96.667 120 4 0 1309 1428 381295836 381295955 2.710000e-47 200.0
20 TraesCS2D01G257600 chr2B 78.613 173 22 9 113 274 14358566 14358734 2.820000e-17 100.0
21 TraesCS2D01G257600 chr2B 91.549 71 4 1 2411 2481 381297092 381297160 3.650000e-16 97.1
22 TraesCS2D01G257600 chr1D 92.379 538 21 7 3920 4437 175550112 175549575 0.000000e+00 749.0
23 TraesCS2D01G257600 chr1D 92.322 534 22 1 3924 4438 175557503 175556970 0.000000e+00 741.0
24 TraesCS2D01G257600 chr1D 88.031 259 25 6 4182 4438 158237345 158237091 7.210000e-78 302.0
25 TraesCS2D01G257600 chr1D 87.356 261 27 6 4180 4438 160069440 160069696 1.210000e-75 294.0
26 TraesCS2D01G257600 chr1D 85.714 231 29 4 2495 2722 421069430 421069201 1.600000e-59 241.0
27 TraesCS2D01G257600 chr1D 92.308 78 5 1 2323 2399 253525943 253526020 4.690000e-20 110.0
28 TraesCS2D01G257600 chr1D 89.655 87 5 2 2326 2412 479748687 479748769 1.690000e-19 108.0
29 TraesCS2D01G257600 chr1D 87.059 85 11 0 2326 2410 372836046 372835962 3.650000e-16 97.1
30 TraesCS2D01G257600 chr1D 86.207 87 5 6 2320 2399 480792942 480792856 2.200000e-13 87.9
31 TraesCS2D01G257600 chr1D 90.909 55 3 2 2315 2369 115574110 115574058 6.160000e-09 73.1
32 TraesCS2D01G257600 chr1D 94.737 38 0 2 2687 2724 48204068 48204103 1.720000e-04 58.4
33 TraesCS2D01G257600 chr1D 100.000 29 0 0 2696 2724 38960976 38960948 2.000000e-03 54.7
34 TraesCS2D01G257600 chr1D 96.970 33 0 1 2691 2723 374027520 374027551 2.000000e-03 54.7
35 TraesCS2D01G257600 chr6D 92.031 389 28 2 3920 4306 30352574 30352187 1.090000e-150 544.0
36 TraesCS2D01G257600 chr6D 94.606 241 13 0 4198 4438 208554093 208553853 1.510000e-99 374.0
37 TraesCS2D01G257600 chr6D 88.421 95 9 2 2629 2722 32250419 32250512 3.630000e-21 113.0
38 TraesCS2D01G257600 chr6D 89.024 82 9 0 2326 2407 383757459 383757378 7.850000e-18 102.0
39 TraesCS2D01G257600 chr6D 91.525 59 3 2 399 457 321990784 321990728 3.680000e-11 80.5
40 TraesCS2D01G257600 chr6D 94.737 38 0 2 2687 2724 199150253 199150288 1.720000e-04 58.4
41 TraesCS2D01G257600 chr3D 94.302 351 19 1 3927 4277 233796571 233796222 1.820000e-148 536.0
42 TraesCS2D01G257600 chr3D 91.867 332 26 1 3969 4300 243755543 243755213 3.130000e-126 462.0
43 TraesCS2D01G257600 chr3D 89.362 94 8 2 2319 2410 131489160 131489253 2.800000e-22 117.0
44 TraesCS2D01G257600 chr3D 89.773 88 7 2 2323 2410 370110021 370110106 1.300000e-20 111.0
45 TraesCS2D01G257600 chr4D 88.163 245 20 8 4198 4438 204045219 204044980 2.610000e-72 283.0
46 TraesCS2D01G257600 chr4D 91.765 85 5 1 2326 2408 484474089 484474005 2.800000e-22 117.0
47 TraesCS2D01G257600 chr4D 90.588 85 8 0 2326 2410 293383841 293383757 3.630000e-21 113.0
48 TraesCS2D01G257600 chr4D 87.097 93 7 2 2319 2410 48537855 48537943 2.820000e-17 100.0
49 TraesCS2D01G257600 chr5B 84.274 248 32 7 2483 2725 317297423 317297178 7.420000e-58 235.0
50 TraesCS2D01G257600 chr1B 83.817 241 37 2 2484 2722 334657309 334657549 1.240000e-55 228.0
51 TraesCS2D01G257600 chr6B 82.213 253 38 6 2478 2726 123244941 123245190 1.250000e-50 211.0
52 TraesCS2D01G257600 chr6B 82.927 164 16 9 113 267 583679490 583679330 2.150000e-28 137.0
53 TraesCS2D01G257600 chr6B 94.872 39 0 2 2687 2725 290187506 290187542 4.790000e-05 60.2
54 TraesCS2D01G257600 chr5A 83.772 228 27 6 102 323 439861147 439860924 1.620000e-49 207.0
55 TraesCS2D01G257600 chr5A 90.426 94 7 2 2320 2411 646183778 646183871 6.030000e-24 122.0
56 TraesCS2D01G257600 chr3B 81.509 265 34 11 2467 2721 648901128 648901387 2.090000e-48 204.0
57 TraesCS2D01G257600 chr3B 82.353 170 25 3 2502 2668 245975416 245975583 4.630000e-30 143.0
58 TraesCS2D01G257600 chr3B 92.553 94 5 2 2319 2410 482487893 482487800 2.780000e-27 134.0
59 TraesCS2D01G257600 chr3B 92.222 90 6 1 2322 2410 482487796 482487885 4.660000e-25 126.0
60 TraesCS2D01G257600 chr1A 87.059 170 16 3 2555 2721 546956672 546956506 2.110000e-43 187.0
61 TraesCS2D01G257600 chr1A 78.017 232 34 12 102 323 53317697 53317921 3.600000e-26 130.0
62 TraesCS2D01G257600 chr1A 86.538 104 9 4 2314 2413 544368569 544368467 4.690000e-20 110.0
63 TraesCS2D01G257600 chr1A 89.655 87 6 1 2326 2412 576201414 576201497 1.690000e-19 108.0
64 TraesCS2D01G257600 chr1A 90.541 74 4 1 2326 2399 576137027 576137097 1.310000e-15 95.3
65 TraesCS2D01G257600 chr1A 82.955 88 8 4 2324 2410 515590788 515590707 6.160000e-09 73.1
66 TraesCS2D01G257600 chr1A 100.000 30 0 0 2696 2725 473118408 473118437 6.200000e-04 56.5
67 TraesCS2D01G257600 chr5D 79.565 230 41 3 119 342 543765982 543765753 4.590000e-35 159.0
68 TraesCS2D01G257600 chr5D 88.889 90 8 2 2322 2410 482103361 482103273 4.690000e-20 110.0
69 TraesCS2D01G257600 chr5D 89.655 87 8 1 2326 2411 482103273 482103359 4.690000e-20 110.0
70 TraesCS2D01G257600 chr4B 78.481 237 41 7 2490 2722 653303620 653303390 3.580000e-31 147.0
71 TraesCS2D01G257600 chr4B 78.661 239 33 13 2483 2719 667426275 667426497 4.630000e-30 143.0
72 TraesCS2D01G257600 chr4B 89.412 85 9 0 2326 2410 61303665 61303581 1.690000e-19 108.0
73 TraesCS2D01G257600 chrUn 85.185 135 17 3 2583 2715 76528017 76528150 7.740000e-28 135.0
74 TraesCS2D01G257600 chrUn 86.111 108 13 2 2583 2689 76580484 76580590 1.010000e-21 115.0
75 TraesCS2D01G257600 chrUn 83.168 101 5 4 2322 2410 70193193 70193293 1.020000e-11 82.4
76 TraesCS2D01G257600 chrUn 91.228 57 5 0 2314 2370 42530618 42530562 1.320000e-10 78.7
77 TraesCS2D01G257600 chrUn 90.909 55 5 0 2316 2370 42338333 42338387 1.710000e-09 75.0
78 TraesCS2D01G257600 chrUn 92.308 52 4 0 2319 2370 474064266 474064215 1.710000e-09 75.0
79 TraesCS2D01G257600 chr6A 91.579 95 6 2 2318 2410 604890759 604890665 3.600000e-26 130.0
80 TraesCS2D01G257600 chr6A 87.912 91 9 1 2322 2410 479543453 479543543 6.070000e-19 106.0
81 TraesCS2D01G257600 chr6A 88.636 88 8 1 2325 2410 479543544 479543457 6.070000e-19 106.0
82 TraesCS2D01G257600 chr6A 87.640 89 7 1 2322 2410 565476115 565476031 2.820000e-17 100.0
83 TraesCS2D01G257600 chr6A 94.737 38 0 2 2687 2724 239459806 239459841 1.720000e-04 58.4
84 TraesCS2D01G257600 chr6A 96.970 33 1 0 2690 2722 77109694 77109662 6.200000e-04 56.5
85 TraesCS2D01G257600 chr6A 90.244 41 4 0 2690 2730 585091104 585091064 2.000000e-03 54.7
86 TraesCS2D01G257600 chr7A 82.993 147 20 3 125 267 9520792 9520937 1.300000e-25 128.0
87 TraesCS2D01G257600 chr7A 92.045 88 6 1 2324 2410 190472978 190473065 6.030000e-24 122.0
88 TraesCS2D01G257600 chr7B 88.421 95 10 1 2326 2419 482485036 482484942 3.630000e-21 113.0
89 TraesCS2D01G257600 chr3A 80.198 101 14 6 2625 2723 86624411 86624507 2.210000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G257600 chr2D 313633053 313637490 4437 False 8196.000000 8196 100.000000 1 4438 1 chr2D.!!$F4 4437
1 TraesCS2D01G257600 chr2D 268932806 268933323 517 False 780.000000 780 93.846000 3920 4437 1 chr2D.!!$F2 517
2 TraesCS2D01G257600 chr2D 269361637 269362167 530 True 758.000000 758 93.032000 3927 4438 1 chr2D.!!$R1 511
3 TraesCS2D01G257600 chr2A 423205862 423211732 5870 True 1225.750000 2274 90.632750 20 3927 4 chr2A.!!$R3 3907
4 TraesCS2D01G257600 chr2B 381292608 381298241 5633 False 640.683333 1555 91.097667 20 3786 6 chr2B.!!$F3 3766
5 TraesCS2D01G257600 chr1D 175549575 175550112 537 True 749.000000 749 92.379000 3920 4437 1 chr1D.!!$R4 517
6 TraesCS2D01G257600 chr1D 175556970 175557503 533 True 741.000000 741 92.322000 3924 4438 1 chr1D.!!$R5 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 387 0.474614 GGGGAAGGAGGATAAGCCAC 59.525 60.0 0.00 0.0 40.02 5.01 F
1294 3780 0.322975 CTGCTAGCCTCCTGTTGTGT 59.677 55.0 13.29 0.0 0.00 3.72 F
1927 4827 0.181114 TATCAGTGGCCAGCACATCC 59.819 55.0 5.11 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 4578 0.318784 GGGCGAGTAATCTAGCGGTG 60.319 60.0 0.00 0.00 41.94 4.94 R
2768 5762 0.472471 GTTGGTGTTGGAGGTCCTGA 59.528 55.0 0.00 0.00 36.82 3.86 R
3503 6497 0.511221 AGAAACAAATCGTGGACGCG 59.489 50.0 3.53 3.53 39.60 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.259374 TCTCCTGCTTTAAGTGAGTCCAG 59.741 47.826 0.00 0.00 0.00 3.86
51 53 8.810990 TTTAAGTGAGTCCAGAAAACCTTTTA 57.189 30.769 0.00 0.00 0.00 1.52
53 55 5.377478 AGTGAGTCCAGAAAACCTTTTAGG 58.623 41.667 0.00 0.00 42.49 2.69
107 109 2.154567 AACTCGTAGTCCATGGGCTA 57.845 50.000 22.42 22.42 0.00 3.93
111 113 3.181465 ACTCGTAGTCCATGGGCTAATTG 60.181 47.826 27.46 20.12 0.00 2.32
121 123 5.660417 TCCATGGGCTAATTGAAATGCTTTA 59.340 36.000 13.02 0.00 0.00 1.85
153 156 6.838382 TCCATATCTTTTAAACCCTAGCTCC 58.162 40.000 0.00 0.00 0.00 4.70
220 228 8.862325 AGTCTGAATATGATGTTGTTTTACCA 57.138 30.769 0.00 0.00 0.00 3.25
221 229 9.295825 AGTCTGAATATGATGTTGTTTTACCAA 57.704 29.630 0.00 0.00 0.00 3.67
285 293 7.381766 TCAATATCACATGACCTGTCTTTTG 57.618 36.000 0.00 0.00 35.29 2.44
287 295 6.992063 ATATCACATGACCTGTCTTTTGTC 57.008 37.500 0.00 0.00 35.29 3.18
310 318 1.762957 ACCGGTGTAGATCTGGATTGG 59.237 52.381 6.12 4.59 35.49 3.16
323 331 5.512942 TCTGGATTGGAAATCAACACCTA 57.487 39.130 2.66 0.00 38.31 3.08
338 347 4.280436 ACACCTAATGAAACCACATCGA 57.720 40.909 0.00 0.00 0.00 3.59
377 387 0.474614 GGGGAAGGAGGATAAGCCAC 59.525 60.000 0.00 0.00 40.02 5.01
380 390 2.175715 GGGAAGGAGGATAAGCCACAAT 59.824 50.000 0.00 0.00 40.02 2.71
385 395 4.298626 AGGAGGATAAGCCACAATACAGA 58.701 43.478 0.00 0.00 40.02 3.41
395 405 3.819337 GCCACAATACAGATGAGATGCAT 59.181 43.478 0.00 0.00 40.77 3.96
438 448 9.524496 CTTGATTCATGATTATTGGATTAGGGA 57.476 33.333 0.00 0.00 0.00 4.20
445 455 6.306199 TGATTATTGGATTAGGGATGTGTGG 58.694 40.000 0.00 0.00 0.00 4.17
487 504 4.860907 GCAGGTTCTTTTGCTAATGACATG 59.139 41.667 0.00 0.00 37.35 3.21
509 526 5.875224 TGTTGAAATAAGAGATGTGGACCA 58.125 37.500 0.00 0.00 0.00 4.02
546 563 8.217111 TGAGTCATTGTTATTAGATTATGGGCA 58.783 33.333 0.00 0.00 0.00 5.36
553 570 7.066142 TGTTATTAGATTATGGGCATGTGGTT 58.934 34.615 0.00 0.00 0.00 3.67
555 572 8.421002 GTTATTAGATTATGGGCATGTGGTTTT 58.579 33.333 0.00 0.00 0.00 2.43
576 593 2.187351 TTTTCTCACAACGCACAAGC 57.813 45.000 0.00 0.00 37.42 4.01
593 619 3.681897 ACAAGCTCTTTTGCTAGTCATCG 59.318 43.478 0.00 0.00 43.24 3.84
599 625 4.607955 TCTTTTGCTAGTCATCGTATCCG 58.392 43.478 0.00 0.00 0.00 4.18
605 631 4.142337 TGCTAGTCATCGTATCCGTTCAAA 60.142 41.667 0.00 0.00 35.01 2.69
614 640 5.771469 TCGTATCCGTTCAAACAGTTTCTA 58.229 37.500 0.00 0.00 35.01 2.10
624 650 3.662247 AACAGTTTCTAGTCAGACGGG 57.338 47.619 0.00 0.00 0.00 5.28
708 757 3.081061 ACTACAAATCAGAAATGCGGCA 58.919 40.909 4.58 4.58 0.00 5.69
722 771 2.575461 GGCAGTGCATTGGAAGGC 59.425 61.111 18.61 0.00 36.03 4.35
723 772 2.575461 GCAGTGCATTGGAAGGCC 59.425 61.111 11.09 0.00 34.24 5.19
724 773 1.980772 GCAGTGCATTGGAAGGCCT 60.981 57.895 11.09 0.00 34.24 5.19
748 3203 2.027192 GCCCATGAGAACTTCAGTACCA 60.027 50.000 0.00 0.00 39.68 3.25
749 3204 3.600388 CCCATGAGAACTTCAGTACCAC 58.400 50.000 0.00 0.00 39.68 4.16
751 3206 4.248859 CCATGAGAACTTCAGTACCACAG 58.751 47.826 0.00 0.00 39.68 3.66
752 3207 4.021104 CCATGAGAACTTCAGTACCACAGA 60.021 45.833 0.00 0.00 39.68 3.41
754 3209 5.392767 TGAGAACTTCAGTACCACAGATC 57.607 43.478 0.00 0.00 0.00 2.75
755 3210 5.080337 TGAGAACTTCAGTACCACAGATCT 58.920 41.667 0.00 0.00 0.00 2.75
765 3220 1.377725 CACAGATCTGGCCACCCAC 60.378 63.158 26.08 0.00 35.79 4.61
784 3239 1.106285 CTTGAGCATAACAAGGCCCC 58.894 55.000 0.00 0.00 0.00 5.80
785 3240 0.704076 TTGAGCATAACAAGGCCCCT 59.296 50.000 0.00 0.00 0.00 4.79
786 3241 1.590591 TGAGCATAACAAGGCCCCTA 58.409 50.000 0.00 0.00 0.00 3.53
787 3242 1.919654 TGAGCATAACAAGGCCCCTAA 59.080 47.619 0.00 0.00 0.00 2.69
788 3243 2.310349 TGAGCATAACAAGGCCCCTAAA 59.690 45.455 0.00 0.00 0.00 1.85
789 3244 3.245443 TGAGCATAACAAGGCCCCTAAAA 60.245 43.478 0.00 0.00 0.00 1.52
790 3245 3.767131 GAGCATAACAAGGCCCCTAAAAA 59.233 43.478 0.00 0.00 0.00 1.94
809 3264 3.349488 AAAACTTGAGCGTAACAAGGC 57.651 42.857 17.32 0.00 45.92 4.35
810 3265 1.235724 AACTTGAGCGTAACAAGGCC 58.764 50.000 17.32 0.00 45.92 5.19
811 3266 0.605589 ACTTGAGCGTAACAAGGCCC 60.606 55.000 17.32 0.00 45.92 5.80
817 3272 1.583495 GCGTAACAAGGCCCAAGTCC 61.583 60.000 0.00 0.00 0.00 3.85
827 3282 0.690762 GCCCAAGTCCAGTCAGGTAA 59.309 55.000 0.00 0.00 39.02 2.85
839 3294 7.107250 TCCAGTCAGGTAATTCGAGAGAACG 62.107 48.000 0.00 0.00 45.96 3.95
907 3392 4.250305 AACACAAGACCCGCCGCT 62.250 61.111 0.00 0.00 0.00 5.52
1153 3639 1.682684 GCGGAAGAGGAGGTGGAGA 60.683 63.158 0.00 0.00 0.00 3.71
1294 3780 0.322975 CTGCTAGCCTCCTGTTGTGT 59.677 55.000 13.29 0.00 0.00 3.72
1301 3787 2.432510 AGCCTCCTGTTGTGTCTATAGC 59.567 50.000 0.00 0.00 0.00 2.97
1305 3791 5.565834 GCCTCCTGTTGTGTCTATAGCTATC 60.566 48.000 10.16 0.00 0.00 2.08
1340 3826 4.063689 GAGCTGGAGTTGATATGGTCATG 58.936 47.826 0.00 0.00 36.54 3.07
1422 3908 3.119352 GGAACCAAATCTAGGCTTGCTTG 60.119 47.826 0.00 0.00 0.00 4.01
1455 3943 9.996554 TGTTACAGACAGAAAAAGATTGATAGA 57.003 29.630 0.00 0.00 33.40 1.98
1481 4375 7.617723 ACCTAATTATTTGTTCATTGCCTGGTA 59.382 33.333 0.00 0.00 0.00 3.25
1492 4386 1.525535 GCCTGGTAGCTGCATCCAG 60.526 63.158 25.51 25.51 45.67 3.86
1495 4389 1.486310 CCTGGTAGCTGCATCCAGTTA 59.514 52.381 27.98 6.56 44.92 2.24
1511 4405 4.042311 TCCAGTTACAAGCCTCATTTGGTA 59.958 41.667 0.00 0.00 0.00 3.25
1512 4406 4.764823 CCAGTTACAAGCCTCATTTGGTAA 59.235 41.667 0.00 0.00 0.00 2.85
1513 4407 5.418840 CCAGTTACAAGCCTCATTTGGTAAT 59.581 40.000 0.00 0.00 0.00 1.89
1514 4408 6.404734 CCAGTTACAAGCCTCATTTGGTAATC 60.405 42.308 0.00 0.00 0.00 1.75
1515 4409 5.354234 AGTTACAAGCCTCATTTGGTAATCG 59.646 40.000 0.00 0.00 0.00 3.34
1516 4410 3.016736 ACAAGCCTCATTTGGTAATCGG 58.983 45.455 0.00 0.00 0.00 4.18
1517 4411 3.016736 CAAGCCTCATTTGGTAATCGGT 58.983 45.455 0.00 0.00 0.00 4.69
1528 4422 5.540400 TTGGTAATCGGTATTGGACTAGG 57.460 43.478 0.00 0.00 0.00 3.02
1530 4424 3.899980 GGTAATCGGTATTGGACTAGGGT 59.100 47.826 0.00 0.00 0.00 4.34
1548 4443 5.928394 AGGGTAAAAAGGGGTAGTGTAAA 57.072 39.130 0.00 0.00 0.00 2.01
1594 4489 6.151144 AGGAACATGATTGCTGGTTAACTAAC 59.849 38.462 5.42 0.00 35.50 2.34
1595 4490 5.545658 ACATGATTGCTGGTTAACTAACG 57.454 39.130 5.42 0.00 37.07 3.18
1596 4491 5.242434 ACATGATTGCTGGTTAACTAACGA 58.758 37.500 5.42 0.00 37.07 3.85
1597 4492 5.703592 ACATGATTGCTGGTTAACTAACGAA 59.296 36.000 5.42 0.00 37.07 3.85
1598 4493 5.600908 TGATTGCTGGTTAACTAACGAAC 57.399 39.130 5.42 0.00 37.07 3.95
1599 4494 4.453136 TGATTGCTGGTTAACTAACGAACC 59.547 41.667 5.42 0.00 44.60 3.62
1600 4495 3.756933 TGCTGGTTAACTAACGAACCT 57.243 42.857 5.42 0.00 44.63 3.50
1601 4496 4.075963 TGCTGGTTAACTAACGAACCTT 57.924 40.909 5.42 0.00 44.63 3.50
1602 4497 3.810941 TGCTGGTTAACTAACGAACCTTG 59.189 43.478 5.42 0.59 44.63 3.61
1603 4498 3.364664 GCTGGTTAACTAACGAACCTTGC 60.365 47.826 5.42 6.11 44.63 4.01
1604 4499 4.062991 CTGGTTAACTAACGAACCTTGCT 58.937 43.478 5.42 0.00 44.63 3.91
1605 4500 5.212532 TGGTTAACTAACGAACCTTGCTA 57.787 39.130 5.42 0.00 44.63 3.49
1606 4501 4.990426 TGGTTAACTAACGAACCTTGCTAC 59.010 41.667 5.42 0.00 44.63 3.58
1607 4502 4.990426 GGTTAACTAACGAACCTTGCTACA 59.010 41.667 5.42 0.00 41.67 2.74
1608 4503 5.107337 GGTTAACTAACGAACCTTGCTACAC 60.107 44.000 5.42 0.00 41.67 2.90
1609 4504 3.738830 ACTAACGAACCTTGCTACACA 57.261 42.857 0.00 0.00 0.00 3.72
1610 4505 4.267349 ACTAACGAACCTTGCTACACAT 57.733 40.909 0.00 0.00 0.00 3.21
1611 4506 5.395682 ACTAACGAACCTTGCTACACATA 57.604 39.130 0.00 0.00 0.00 2.29
1612 4507 5.974108 ACTAACGAACCTTGCTACACATAT 58.026 37.500 0.00 0.00 0.00 1.78
1613 4508 5.810587 ACTAACGAACCTTGCTACACATATG 59.189 40.000 0.00 0.00 0.00 1.78
1614 4509 4.465632 ACGAACCTTGCTACACATATGA 57.534 40.909 10.38 0.00 0.00 2.15
1615 4510 4.181578 ACGAACCTTGCTACACATATGAC 58.818 43.478 10.38 0.00 0.00 3.06
1616 4511 4.180817 CGAACCTTGCTACACATATGACA 58.819 43.478 10.38 0.00 0.00 3.58
1617 4512 4.811024 CGAACCTTGCTACACATATGACAT 59.189 41.667 10.38 0.00 0.00 3.06
1618 4513 5.294306 CGAACCTTGCTACACATATGACATT 59.706 40.000 10.38 0.00 0.00 2.71
1619 4514 6.183360 CGAACCTTGCTACACATATGACATTT 60.183 38.462 10.38 0.00 0.00 2.32
1620 4515 7.466746 AACCTTGCTACACATATGACATTTT 57.533 32.000 10.38 0.00 0.00 1.82
1621 4516 7.466746 ACCTTGCTACACATATGACATTTTT 57.533 32.000 10.38 0.00 0.00 1.94
1622 4517 7.315142 ACCTTGCTACACATATGACATTTTTG 58.685 34.615 10.38 0.00 0.00 2.44
1623 4518 6.753279 CCTTGCTACACATATGACATTTTTGG 59.247 38.462 10.38 0.00 0.00 3.28
1624 4519 6.832520 TGCTACACATATGACATTTTTGGT 57.167 33.333 10.38 0.00 0.00 3.67
1625 4520 7.929941 TGCTACACATATGACATTTTTGGTA 57.070 32.000 10.38 0.00 0.00 3.25
1626 4521 7.757526 TGCTACACATATGACATTTTTGGTAC 58.242 34.615 10.38 0.00 0.00 3.34
1627 4522 6.905076 GCTACACATATGACATTTTTGGTACG 59.095 38.462 10.38 0.00 0.00 3.67
1628 4523 7.201574 GCTACACATATGACATTTTTGGTACGA 60.202 37.037 10.38 0.00 0.00 3.43
1629 4524 7.624360 ACACATATGACATTTTTGGTACGAT 57.376 32.000 10.38 0.00 0.00 3.73
1630 4525 8.050778 ACACATATGACATTTTTGGTACGATT 57.949 30.769 10.38 0.00 0.00 3.34
1631 4526 8.181573 ACACATATGACATTTTTGGTACGATTC 58.818 33.333 10.38 0.00 0.00 2.52
1632 4527 8.397906 CACATATGACATTTTTGGTACGATTCT 58.602 33.333 10.38 0.00 0.00 2.40
1633 4528 8.956426 ACATATGACATTTTTGGTACGATTCTT 58.044 29.630 10.38 0.00 0.00 2.52
1634 4529 9.225201 CATATGACATTTTTGGTACGATTCTTG 57.775 33.333 0.00 0.00 0.00 3.02
1635 4530 6.627395 TGACATTTTTGGTACGATTCTTGT 57.373 33.333 0.00 0.00 0.00 3.16
1636 4531 6.664515 TGACATTTTTGGTACGATTCTTGTC 58.335 36.000 0.00 7.31 0.00 3.18
1637 4532 6.009115 ACATTTTTGGTACGATTCTTGTCC 57.991 37.500 0.00 0.00 0.00 4.02
1638 4533 4.735662 TTTTTGGTACGATTCTTGTCCG 57.264 40.909 0.00 0.00 0.00 4.79
1639 4534 3.663995 TTTGGTACGATTCTTGTCCGA 57.336 42.857 0.00 0.00 0.00 4.55
1640 4535 2.642139 TGGTACGATTCTTGTCCGAC 57.358 50.000 0.00 0.00 0.00 4.79
1641 4536 1.887854 TGGTACGATTCTTGTCCGACA 59.112 47.619 0.00 0.00 0.00 4.35
1642 4537 2.257034 GGTACGATTCTTGTCCGACAC 58.743 52.381 0.00 0.00 0.00 3.67
1643 4538 2.094854 GGTACGATTCTTGTCCGACACT 60.095 50.000 0.00 0.00 0.00 3.55
1644 4539 2.065993 ACGATTCTTGTCCGACACTG 57.934 50.000 0.00 0.00 0.00 3.66
1645 4540 0.716108 CGATTCTTGTCCGACACTGC 59.284 55.000 0.00 0.00 0.00 4.40
1646 4541 1.670087 CGATTCTTGTCCGACACTGCT 60.670 52.381 0.00 0.00 0.00 4.24
1647 4542 2.415491 CGATTCTTGTCCGACACTGCTA 60.415 50.000 0.00 0.00 0.00 3.49
1648 4543 3.585862 GATTCTTGTCCGACACTGCTAA 58.414 45.455 0.00 0.00 0.00 3.09
1649 4544 3.678056 TTCTTGTCCGACACTGCTAAT 57.322 42.857 0.00 0.00 0.00 1.73
1650 4545 3.232213 TCTTGTCCGACACTGCTAATC 57.768 47.619 0.00 0.00 0.00 1.75
1651 4546 2.560981 TCTTGTCCGACACTGCTAATCA 59.439 45.455 0.00 0.00 0.00 2.57
1653 4548 2.167662 TGTCCGACACTGCTAATCAGA 58.832 47.619 0.00 0.00 45.72 3.27
1654 4549 2.094700 TGTCCGACACTGCTAATCAGAC 60.095 50.000 0.00 0.00 45.72 3.51
1655 4550 2.164624 GTCCGACACTGCTAATCAGACT 59.835 50.000 0.00 0.00 45.72 3.24
1656 4551 2.164422 TCCGACACTGCTAATCAGACTG 59.836 50.000 0.00 0.00 45.72 3.51
1657 4552 2.094494 CCGACACTGCTAATCAGACTGT 60.094 50.000 1.59 0.00 45.72 3.55
1658 4553 3.128764 CCGACACTGCTAATCAGACTGTA 59.871 47.826 1.59 0.00 45.72 2.74
1659 4554 4.099120 CGACACTGCTAATCAGACTGTAC 58.901 47.826 1.59 0.00 45.72 2.90
1660 4555 4.379499 CGACACTGCTAATCAGACTGTACA 60.379 45.833 1.59 0.00 45.72 2.90
1661 4556 5.655488 GACACTGCTAATCAGACTGTACAT 58.345 41.667 1.59 0.00 45.72 2.29
1662 4557 6.458342 CGACACTGCTAATCAGACTGTACATA 60.458 42.308 1.59 0.00 45.72 2.29
1663 4558 6.565234 ACACTGCTAATCAGACTGTACATAC 58.435 40.000 1.59 0.00 45.72 2.39
1664 4559 6.378564 ACACTGCTAATCAGACTGTACATACT 59.621 38.462 1.59 0.00 45.72 2.12
1665 4560 7.093727 ACACTGCTAATCAGACTGTACATACTT 60.094 37.037 1.59 0.00 45.72 2.24
1666 4561 8.406297 CACTGCTAATCAGACTGTACATACTTA 58.594 37.037 1.59 0.00 45.72 2.24
1667 4562 8.625651 ACTGCTAATCAGACTGTACATACTTAG 58.374 37.037 1.59 0.55 45.72 2.18
1668 4563 7.941919 TGCTAATCAGACTGTACATACTTAGG 58.058 38.462 1.59 0.00 0.00 2.69
1669 4564 7.778382 TGCTAATCAGACTGTACATACTTAGGA 59.222 37.037 1.59 0.00 0.00 2.94
1670 4565 8.798402 GCTAATCAGACTGTACATACTTAGGAT 58.202 37.037 1.59 0.00 0.00 3.24
1673 4568 8.768501 ATCAGACTGTACATACTTAGGATTGA 57.231 34.615 1.59 0.00 0.00 2.57
1674 4569 8.589701 TCAGACTGTACATACTTAGGATTGAA 57.410 34.615 1.59 0.00 0.00 2.69
1675 4570 8.687242 TCAGACTGTACATACTTAGGATTGAAG 58.313 37.037 1.59 0.00 0.00 3.02
1676 4571 7.436673 CAGACTGTACATACTTAGGATTGAAGC 59.563 40.741 0.00 0.00 0.00 3.86
1677 4572 7.124298 AGACTGTACATACTTAGGATTGAAGCA 59.876 37.037 0.00 0.00 0.00 3.91
1678 4573 7.796054 ACTGTACATACTTAGGATTGAAGCAT 58.204 34.615 0.00 0.00 0.00 3.79
1679 4574 8.924303 ACTGTACATACTTAGGATTGAAGCATA 58.076 33.333 0.00 0.00 0.00 3.14
1680 4575 9.416794 CTGTACATACTTAGGATTGAAGCATAG 57.583 37.037 0.00 0.00 0.00 2.23
1681 4576 8.924303 TGTACATACTTAGGATTGAAGCATAGT 58.076 33.333 0.00 0.00 0.00 2.12
1684 4579 8.924303 ACATACTTAGGATTGAAGCATAGTACA 58.076 33.333 0.00 0.00 0.00 2.90
1685 4580 9.197694 CATACTTAGGATTGAAGCATAGTACAC 57.802 37.037 0.00 0.00 0.00 2.90
1686 4581 6.583562 ACTTAGGATTGAAGCATAGTACACC 58.416 40.000 0.00 0.00 0.00 4.16
1687 4582 4.060038 AGGATTGAAGCATAGTACACCG 57.940 45.455 0.00 0.00 0.00 4.94
1688 4583 2.544267 GGATTGAAGCATAGTACACCGC 59.456 50.000 0.00 0.00 0.00 5.68
1689 4584 3.458189 GATTGAAGCATAGTACACCGCT 58.542 45.455 0.00 0.00 35.90 5.52
1690 4585 4.500887 GGATTGAAGCATAGTACACCGCTA 60.501 45.833 0.00 0.00 33.45 4.26
1691 4586 3.710326 TGAAGCATAGTACACCGCTAG 57.290 47.619 0.00 0.00 33.45 3.42
1692 4587 3.284617 TGAAGCATAGTACACCGCTAGA 58.715 45.455 0.00 0.00 33.45 2.43
1693 4588 3.889538 TGAAGCATAGTACACCGCTAGAT 59.110 43.478 0.00 0.00 33.45 1.98
1694 4589 4.341235 TGAAGCATAGTACACCGCTAGATT 59.659 41.667 0.00 0.00 33.45 2.40
1695 4590 5.533528 TGAAGCATAGTACACCGCTAGATTA 59.466 40.000 0.00 0.00 33.45 1.75
1696 4591 5.373981 AGCATAGTACACCGCTAGATTAC 57.626 43.478 0.00 0.00 31.60 1.89
1697 4592 5.071370 AGCATAGTACACCGCTAGATTACT 58.929 41.667 0.00 0.00 31.60 2.24
1698 4593 5.181622 AGCATAGTACACCGCTAGATTACTC 59.818 44.000 0.00 0.00 31.60 2.59
1699 4594 5.619513 CATAGTACACCGCTAGATTACTCG 58.380 45.833 0.00 0.00 0.00 4.18
1700 4595 2.290093 AGTACACCGCTAGATTACTCGC 59.710 50.000 0.00 0.00 0.00 5.03
1701 4596 0.384669 ACACCGCTAGATTACTCGCC 59.615 55.000 0.00 0.00 32.27 5.54
1702 4597 0.318784 CACCGCTAGATTACTCGCCC 60.319 60.000 0.00 0.00 32.27 6.13
1703 4598 0.467659 ACCGCTAGATTACTCGCCCT 60.468 55.000 0.00 0.00 32.27 5.19
1704 4599 1.202855 ACCGCTAGATTACTCGCCCTA 60.203 52.381 0.00 0.00 32.27 3.53
1705 4600 2.093106 CCGCTAGATTACTCGCCCTAT 58.907 52.381 0.00 0.00 32.27 2.57
1706 4601 2.159366 CCGCTAGATTACTCGCCCTATG 60.159 54.545 0.00 0.00 32.27 2.23
1707 4602 2.159366 CGCTAGATTACTCGCCCTATGG 60.159 54.545 0.00 0.00 32.27 2.74
1722 4617 4.682778 CCTATGGGAATCGGACTAACAA 57.317 45.455 0.00 0.00 33.58 2.83
1723 4618 4.632153 CCTATGGGAATCGGACTAACAAG 58.368 47.826 0.00 0.00 33.58 3.16
1724 4619 2.396590 TGGGAATCGGACTAACAAGC 57.603 50.000 0.00 0.00 0.00 4.01
1725 4620 1.287425 GGGAATCGGACTAACAAGCG 58.713 55.000 0.00 0.00 0.00 4.68
1726 4621 0.651031 GGAATCGGACTAACAAGCGC 59.349 55.000 0.00 0.00 0.00 5.92
1727 4622 1.641577 GAATCGGACTAACAAGCGCT 58.358 50.000 2.64 2.64 0.00 5.92
1728 4623 1.324736 GAATCGGACTAACAAGCGCTG 59.675 52.381 12.58 8.13 0.00 5.18
1729 4624 0.460284 ATCGGACTAACAAGCGCTGG 60.460 55.000 12.58 11.82 0.00 4.85
1730 4625 2.100631 CGGACTAACAAGCGCTGGG 61.101 63.158 17.95 12.38 0.00 4.45
1731 4626 2.399356 GGACTAACAAGCGCTGGGC 61.399 63.158 17.95 8.86 44.05 5.36
1742 4637 2.434359 GCTGGGCGCGAAGTAGTT 60.434 61.111 12.10 0.00 0.00 2.24
1743 4638 2.453638 GCTGGGCGCGAAGTAGTTC 61.454 63.158 12.10 0.00 0.00 3.01
1744 4639 1.215647 CTGGGCGCGAAGTAGTTCT 59.784 57.895 12.10 0.00 0.00 3.01
1745 4640 1.078759 CTGGGCGCGAAGTAGTTCTG 61.079 60.000 12.10 3.75 0.00 3.02
1746 4641 1.080025 GGGCGCGAAGTAGTTCTGT 60.080 57.895 12.10 0.00 0.00 3.41
1747 4642 0.669625 GGGCGCGAAGTAGTTCTGTT 60.670 55.000 12.10 0.00 0.00 3.16
1748 4643 1.145803 GGCGCGAAGTAGTTCTGTTT 58.854 50.000 12.10 0.00 0.00 2.83
1749 4644 2.331194 GGCGCGAAGTAGTTCTGTTTA 58.669 47.619 12.10 0.00 0.00 2.01
1750 4645 2.091744 GGCGCGAAGTAGTTCTGTTTAC 59.908 50.000 12.10 0.00 0.00 2.01
1751 4646 2.985139 GCGCGAAGTAGTTCTGTTTACT 59.015 45.455 12.10 0.00 0.00 2.24
1752 4647 4.161333 GCGCGAAGTAGTTCTGTTTACTA 58.839 43.478 12.10 0.00 30.27 1.82
1753 4648 4.618489 GCGCGAAGTAGTTCTGTTTACTAA 59.382 41.667 12.10 0.00 30.42 2.24
1796 4691 6.994868 TGTATTAAAACACATTTTGCGACC 57.005 33.333 0.00 0.00 38.50 4.79
1799 4694 2.113910 AAACACATTTTGCGACCGAC 57.886 45.000 0.00 0.00 0.00 4.79
1826 4721 4.081752 AGGTAGAGATTGCTGAGTGAACAG 60.082 45.833 0.00 0.00 40.43 3.16
1827 4722 4.081972 GGTAGAGATTGCTGAGTGAACAGA 60.082 45.833 0.00 0.00 39.94 3.41
1927 4827 0.181114 TATCAGTGGCCAGCACATCC 59.819 55.000 5.11 0.00 0.00 3.51
1941 4842 0.960364 ACATCCGCGCATTCCTTGTT 60.960 50.000 8.75 0.00 0.00 2.83
1956 4857 0.385029 TTGTTGCACAAGCTCGCATT 59.615 45.000 6.29 0.00 42.74 3.56
1986 4888 4.932146 TCTTTTTGTAGTGGAAAAGCTGC 58.068 39.130 0.00 0.00 40.77 5.25
1993 4895 3.728385 AGTGGAAAAGCTGCTATTCCT 57.272 42.857 16.95 0.00 42.50 3.36
2007 4909 7.176340 AGCTGCTATTCCTTCATATGGAAATTC 59.824 37.037 0.00 0.00 45.38 2.17
2008 4910 7.040201 GCTGCTATTCCTTCATATGGAAATTCA 60.040 37.037 2.13 0.00 45.38 2.57
2020 4922 8.281531 TCATATGGAAATTCACCTATGTTTCCT 58.718 33.333 14.58 5.55 46.13 3.36
2048 4950 8.302515 AGTTTCTTCTTGCATGGAATATCAAT 57.697 30.769 0.00 0.00 0.00 2.57
2094 4998 5.480073 TGCCTATGTTAGCACAAAAAGGAAT 59.520 36.000 7.41 0.00 36.16 3.01
2098 5002 4.854399 TGTTAGCACAAAAAGGAATGTCG 58.146 39.130 0.00 0.00 0.00 4.35
2107 5011 5.977129 ACAAAAAGGAATGTCGTTTTGCTAG 59.023 36.000 14.65 0.00 44.17 3.42
2122 5026 4.824479 TTGCTAGGAGACACAATCATCA 57.176 40.909 0.00 0.00 0.00 3.07
2130 5034 5.879223 AGGAGACACAATCATCAATTGAGAC 59.121 40.000 14.54 0.00 46.54 3.36
2135 5039 6.605849 ACACAATCATCAATTGAGACGAAAG 58.394 36.000 14.54 9.22 46.54 2.62
2139 5043 8.783093 ACAATCATCAATTGAGACGAAAGTTTA 58.217 29.630 14.54 0.00 46.14 2.01
2174 5079 6.851330 GTCACTAAACTGTAAATGTTGCTGAC 59.149 38.462 0.00 0.00 0.00 3.51
2195 5100 8.012241 GCTGACTTTCTGACTTTATTGTACAAG 58.988 37.037 14.65 2.47 0.00 3.16
2299 5206 1.623311 ACTGCTATATGTGCGCCCATA 59.377 47.619 14.99 14.99 0.00 2.74
2333 5241 5.104900 TGCCTCAAGAAATTAGTACTCCCTC 60.105 44.000 0.00 0.00 0.00 4.30
2334 5242 5.685337 GCCTCAAGAAATTAGTACTCCCTCC 60.685 48.000 0.00 0.00 0.00 4.30
2349 5257 6.054860 ACTCCCTCCGATCCATATTAATTG 57.945 41.667 0.00 0.00 0.00 2.32
2356 5264 6.517605 TCCGATCCATATTAATTGTCGTTGA 58.482 36.000 0.00 0.00 0.00 3.18
2497 5488 0.449388 AAGCGTAGTAACTCCGTCCG 59.551 55.000 0.00 0.00 0.00 4.79
2514 5505 1.001120 CGGGTTTATTGGGCCCCTT 59.999 57.895 22.27 9.36 39.22 3.95
2515 5506 0.616395 CGGGTTTATTGGGCCCCTTT 60.616 55.000 22.27 6.36 39.22 3.11
2531 5522 3.831911 CCCCTTTGTATTTTGAGCCAGAA 59.168 43.478 0.00 0.00 0.00 3.02
2534 5525 5.870978 CCCTTTGTATTTTGAGCCAGAATTG 59.129 40.000 0.00 0.00 0.00 2.32
2620 5612 9.825972 TTGTATTTGAAAGAGTTTTCGATGATC 57.174 29.630 0.00 0.00 44.55 2.92
2694 5686 9.160412 TCAAATTTTAACCCAAAATAAGAGGGA 57.840 29.630 3.32 0.00 44.37 4.20
2697 5690 5.871324 TTAACCCAAAATAAGAGGGACCT 57.129 39.130 3.32 0.00 45.80 3.85
2703 5696 7.946381 ACCCAAAATAAGAGGGACCTAATAAA 58.054 34.615 3.32 0.00 45.80 1.40
2745 5738 8.141835 ACATGTTTCTGTTTTGGAAAATAAGC 57.858 30.769 0.00 0.00 34.97 3.09
2768 5762 3.023832 GCTTACCACCTTATTGCCATGT 58.976 45.455 0.00 0.00 0.00 3.21
3068 6062 6.566079 TCTAATGGAATGACTGAAGATGGT 57.434 37.500 0.00 0.00 0.00 3.55
3084 6078 1.002990 GGTACAGGGACAAACGGGG 60.003 63.158 0.00 0.00 0.00 5.73
3085 6079 1.756665 GTACAGGGACAAACGGGGT 59.243 57.895 0.00 0.00 0.00 4.95
3098 6092 1.408969 ACGGGGTGCAAAACAGAATT 58.591 45.000 0.00 0.00 0.00 2.17
3103 6097 3.769300 GGGGTGCAAAACAGAATTCCTAT 59.231 43.478 0.65 0.00 0.00 2.57
3106 6100 5.127682 GGGTGCAAAACAGAATTCCTATCAT 59.872 40.000 0.65 0.00 0.00 2.45
3123 6117 2.809446 TCATGTCGAGCCGTAATTCAG 58.191 47.619 0.00 0.00 0.00 3.02
3146 6140 4.446023 GCAGGAGGGATCAGATCTTTGATT 60.446 45.833 10.36 0.00 37.90 2.57
3153 6147 5.383476 GGATCAGATCTTTGATTGGATGGT 58.617 41.667 10.36 0.00 37.90 3.55
3341 6335 1.272480 GGGAAGGTAATGGTGCTTGGT 60.272 52.381 0.00 0.00 0.00 3.67
3467 6461 2.158813 CCGGGCAGTGTGAATATTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
3503 6497 3.139077 CTCTTGGTGTTGTGTAGGAACC 58.861 50.000 0.00 0.00 0.00 3.62
3507 6501 0.877213 GTGTTGTGTAGGAACCGCGT 60.877 55.000 4.92 0.00 0.00 6.01
3514 6508 2.048023 TAGGAACCGCGTCCACGAT 61.048 57.895 17.08 0.14 43.02 3.73
3653 6652 1.221566 TGGCGGATCCATGAGTGTG 59.778 57.895 13.41 0.00 40.72 3.82
3664 6663 2.421073 CCATGAGTGTGTATGTTGCCTG 59.579 50.000 0.00 0.00 0.00 4.85
3744 6746 1.541588 GCCCTAGGTTTTTGCTCTGTG 59.458 52.381 8.29 0.00 0.00 3.66
3782 6784 1.005630 AGCAGAGTCTGTTGCCGAC 60.006 57.895 21.06 2.96 41.17 4.79
3799 6801 1.177401 GACCAGTGAAGGCATTTCCC 58.823 55.000 0.00 0.00 34.77 3.97
3810 6812 6.316890 GTGAAGGCATTTCCCGTACTTTTATA 59.683 38.462 0.00 0.00 34.77 0.98
3819 6821 4.964262 TCCCGTACTTTTATACCCTGATGT 59.036 41.667 0.00 0.00 0.00 3.06
3865 6867 1.493861 TGAGAAGAGAGATGGGCTGG 58.506 55.000 0.00 0.00 0.00 4.85
3866 6868 0.106521 GAGAAGAGAGATGGGCTGGC 59.893 60.000 0.00 0.00 0.00 4.85
3908 6910 1.475034 GGAATCTGAACCCAGCGCATA 60.475 52.381 11.47 0.00 40.20 3.14
4070 7073 1.829222 CTACTTCAAGCCCGGACCTTA 59.171 52.381 0.73 0.00 0.00 2.69
4261 7284 0.602905 GCAACCGAAGTGCTACAGGT 60.603 55.000 0.00 0.00 36.66 4.00
4317 7359 2.680370 GGCCCCAGTCCGGAAATCT 61.680 63.158 5.23 0.00 36.56 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.128242 GGAGAGTGAGTCGATTAACCGAA 59.872 47.826 0.00 0.00 40.51 4.30
1 2 2.681848 GGAGAGTGAGTCGATTAACCGA 59.318 50.000 0.00 0.00 36.06 4.69
2 3 2.683867 AGGAGAGTGAGTCGATTAACCG 59.316 50.000 0.00 0.00 0.00 4.44
3 4 3.735514 GCAGGAGAGTGAGTCGATTAACC 60.736 52.174 0.00 0.00 0.00 2.85
4 5 3.129638 AGCAGGAGAGTGAGTCGATTAAC 59.870 47.826 0.00 0.00 0.00 2.01
5 6 3.357203 AGCAGGAGAGTGAGTCGATTAA 58.643 45.455 0.00 0.00 0.00 1.40
6 7 3.006112 AGCAGGAGAGTGAGTCGATTA 57.994 47.619 0.00 0.00 0.00 1.75
7 8 1.846007 AGCAGGAGAGTGAGTCGATT 58.154 50.000 0.00 0.00 0.00 3.34
8 9 1.846007 AAGCAGGAGAGTGAGTCGAT 58.154 50.000 0.00 0.00 0.00 3.59
9 10 1.621992 AAAGCAGGAGAGTGAGTCGA 58.378 50.000 0.00 0.00 0.00 4.20
10 11 3.057174 ACTTAAAGCAGGAGAGTGAGTCG 60.057 47.826 0.00 0.00 0.00 4.18
11 12 4.021894 TCACTTAAAGCAGGAGAGTGAGTC 60.022 45.833 0.74 0.00 41.09 3.36
12 13 3.898123 TCACTTAAAGCAGGAGAGTGAGT 59.102 43.478 0.74 0.00 41.09 3.41
13 14 4.527509 TCACTTAAAGCAGGAGAGTGAG 57.472 45.455 0.74 0.00 41.09 3.51
14 15 3.898123 ACTCACTTAAAGCAGGAGAGTGA 59.102 43.478 4.65 4.65 43.02 3.41
15 16 4.241681 GACTCACTTAAAGCAGGAGAGTG 58.758 47.826 0.00 0.00 39.16 3.51
16 17 3.259625 GGACTCACTTAAAGCAGGAGAGT 59.740 47.826 0.00 0.00 36.52 3.24
17 18 3.259374 TGGACTCACTTAAAGCAGGAGAG 59.741 47.826 0.00 0.00 0.00 3.20
18 19 3.239449 TGGACTCACTTAAAGCAGGAGA 58.761 45.455 0.00 0.00 0.00 3.71
91 93 3.035363 TCAATTAGCCCATGGACTACGA 58.965 45.455 15.22 5.15 0.00 3.43
92 94 3.469008 TCAATTAGCCCATGGACTACG 57.531 47.619 15.22 2.62 0.00 3.51
93 95 5.507985 GCATTTCAATTAGCCCATGGACTAC 60.508 44.000 15.22 0.00 0.00 2.73
94 96 4.584325 GCATTTCAATTAGCCCATGGACTA 59.416 41.667 15.22 8.91 0.00 2.59
96 98 3.385755 AGCATTTCAATTAGCCCATGGAC 59.614 43.478 15.22 0.00 0.00 4.02
144 147 4.019174 ACATGTCAAAATTGGAGCTAGGG 58.981 43.478 0.00 0.00 0.00 3.53
149 152 8.556194 TCGTATATAACATGTCAAAATTGGAGC 58.444 33.333 0.00 0.00 0.00 4.70
173 176 9.360093 AGACTCTACACATTTTTCTAATCTTCG 57.640 33.333 0.00 0.00 0.00 3.79
246 254 8.173542 TGTGATATTGATTAAGCTTGCATCAT 57.826 30.769 18.78 13.18 0.00 2.45
249 257 8.080417 GTCATGTGATATTGATTAAGCTTGCAT 58.920 33.333 9.86 0.31 0.00 3.96
255 263 7.443575 AGACAGGTCATGTGATATTGATTAAGC 59.556 37.037 0.00 0.00 44.17 3.09
310 318 6.744112 TGTGGTTTCATTAGGTGTTGATTTC 58.256 36.000 0.00 0.00 0.00 2.17
323 331 3.659786 TCGTCTTCGATGTGGTTTCATT 58.340 40.909 0.00 0.00 41.35 2.57
349 358 4.475444 TCCTTCCCCCTCGCCGAT 62.475 66.667 0.00 0.00 0.00 4.18
352 362 2.674672 TATCCTCCTTCCCCCTCGCC 62.675 65.000 0.00 0.00 0.00 5.54
377 387 3.120304 CCGCATGCATCTCATCTGTATTG 60.120 47.826 19.57 0.00 31.79 1.90
380 390 1.688197 TCCGCATGCATCTCATCTGTA 59.312 47.619 19.57 0.00 31.79 2.74
385 395 1.051008 TAGGTCCGCATGCATCTCAT 58.949 50.000 19.57 5.12 35.31 2.90
417 427 8.226810 ACACATCCCTAATCCAATAATCATGAA 58.773 33.333 0.00 0.00 0.00 2.57
429 439 5.568620 AAGATACCACACATCCCTAATCC 57.431 43.478 0.00 0.00 0.00 3.01
459 469 6.149474 GTCATTAGCAAAAGAACCTGCTCTAA 59.851 38.462 0.00 0.00 45.79 2.10
483 500 6.375455 GGTCCACATCTCTTATTTCAACATGT 59.625 38.462 0.00 0.00 0.00 3.21
487 504 6.817765 TTGGTCCACATCTCTTATTTCAAC 57.182 37.500 0.00 0.00 0.00 3.18
497 514 1.005924 ACCCCAATTGGTCCACATCTC 59.994 52.381 22.91 0.00 31.15 2.75
509 526 4.118168 ACAATGACTCAAGACCCCAATT 57.882 40.909 0.00 0.00 0.00 2.32
561 578 0.940126 AAGAGCTTGTGCGTTGTGAG 59.060 50.000 0.00 0.00 45.42 3.51
564 581 1.798813 GCAAAAGAGCTTGTGCGTTGT 60.799 47.619 9.42 0.00 43.06 3.32
566 583 3.256620 GCAAAAGAGCTTGTGCGTT 57.743 47.368 9.42 0.00 43.06 4.84
575 592 4.446051 GGATACGATGACTAGCAAAAGAGC 59.554 45.833 0.00 0.00 0.00 4.09
593 619 6.643770 TGACTAGAAACTGTTTGAACGGATAC 59.356 38.462 11.03 0.00 38.65 2.24
599 625 5.050972 CCGTCTGACTAGAAACTGTTTGAAC 60.051 44.000 11.03 0.00 34.01 3.18
605 631 1.272769 GCCCGTCTGACTAGAAACTGT 59.727 52.381 6.21 0.00 34.01 3.55
614 640 0.968901 TATTGACCGCCCGTCTGACT 60.969 55.000 6.21 0.00 42.49 3.41
708 757 1.957113 GCTAAGGCCTTCCAATGCACT 60.957 52.381 24.49 0.00 33.74 4.40
722 771 3.054802 ACTGAAGTTCTCATGGGCTAAGG 60.055 47.826 4.17 0.00 32.14 2.69
723 772 4.213564 ACTGAAGTTCTCATGGGCTAAG 57.786 45.455 4.17 0.00 32.14 2.18
724 773 4.081087 GGTACTGAAGTTCTCATGGGCTAA 60.081 45.833 4.17 0.00 32.14 3.09
748 3203 1.136329 AAGTGGGTGGCCAGATCTGT 61.136 55.000 21.11 0.00 0.00 3.41
749 3204 0.679002 CAAGTGGGTGGCCAGATCTG 60.679 60.000 16.24 16.24 0.00 2.90
751 3206 0.393537 CTCAAGTGGGTGGCCAGATC 60.394 60.000 5.11 0.00 0.00 2.75
752 3207 1.687612 CTCAAGTGGGTGGCCAGAT 59.312 57.895 5.11 0.00 0.00 2.90
754 3209 2.674380 GCTCAAGTGGGTGGCCAG 60.674 66.667 5.11 0.00 0.00 4.85
755 3210 1.496444 TATGCTCAAGTGGGTGGCCA 61.496 55.000 0.00 0.00 0.00 5.36
765 3220 1.106285 GGGGCCTTGTTATGCTCAAG 58.894 55.000 0.84 0.00 41.06 3.02
788 3243 3.490249 GGCCTTGTTACGCTCAAGTTTTT 60.490 43.478 0.00 0.00 40.15 1.94
789 3244 2.034179 GGCCTTGTTACGCTCAAGTTTT 59.966 45.455 0.00 0.00 40.15 2.43
790 3245 1.607148 GGCCTTGTTACGCTCAAGTTT 59.393 47.619 0.00 0.00 40.15 2.66
791 3246 1.235724 GGCCTTGTTACGCTCAAGTT 58.764 50.000 0.00 0.00 40.15 2.66
792 3247 0.605589 GGGCCTTGTTACGCTCAAGT 60.606 55.000 0.84 0.00 40.15 3.16
793 3248 0.605319 TGGGCCTTGTTACGCTCAAG 60.605 55.000 4.53 7.54 41.06 3.02
794 3249 0.179015 TTGGGCCTTGTTACGCTCAA 60.179 50.000 4.53 0.00 43.07 3.02
795 3250 0.605319 CTTGGGCCTTGTTACGCTCA 60.605 55.000 4.53 0.00 32.36 4.26
796 3251 0.605589 ACTTGGGCCTTGTTACGCTC 60.606 55.000 4.53 0.00 0.00 5.03
797 3252 0.605589 GACTTGGGCCTTGTTACGCT 60.606 55.000 4.53 0.00 0.00 5.07
798 3253 1.583495 GGACTTGGGCCTTGTTACGC 61.583 60.000 4.53 0.00 0.00 4.42
799 3254 0.250553 TGGACTTGGGCCTTGTTACG 60.251 55.000 4.53 0.00 0.00 3.18
800 3255 1.202891 ACTGGACTTGGGCCTTGTTAC 60.203 52.381 4.53 2.09 0.00 2.50
801 3256 1.073284 GACTGGACTTGGGCCTTGTTA 59.927 52.381 4.53 0.00 0.00 2.41
802 3257 0.178990 GACTGGACTTGGGCCTTGTT 60.179 55.000 4.53 0.00 0.00 2.83
803 3258 1.352622 TGACTGGACTTGGGCCTTGT 61.353 55.000 4.53 2.96 0.00 3.16
804 3259 0.607489 CTGACTGGACTTGGGCCTTG 60.607 60.000 4.53 0.00 0.00 3.61
805 3260 1.763770 CTGACTGGACTTGGGCCTT 59.236 57.895 4.53 0.00 0.00 4.35
806 3261 2.227036 CCTGACTGGACTTGGGCCT 61.227 63.158 4.53 0.00 38.35 5.19
807 3262 1.198759 TACCTGACTGGACTTGGGCC 61.199 60.000 5.22 0.00 39.71 5.80
808 3263 0.690762 TTACCTGACTGGACTTGGGC 59.309 55.000 5.22 0.00 39.71 5.36
809 3264 3.610911 GAATTACCTGACTGGACTTGGG 58.389 50.000 5.22 0.00 39.71 4.12
810 3265 3.056107 TCGAATTACCTGACTGGACTTGG 60.056 47.826 5.22 0.00 39.71 3.61
811 3266 4.082190 TCTCGAATTACCTGACTGGACTTG 60.082 45.833 5.22 0.00 39.71 3.16
817 3272 4.099120 CGTTCTCTCGAATTACCTGACTG 58.901 47.826 0.00 0.00 0.00 3.51
827 3282 6.598753 TTTTTGTCTTTCGTTCTCTCGAAT 57.401 33.333 2.57 0.00 46.55 3.34
839 3294 5.733109 GCGTATCCGAAGATTTTTGTCTTTC 59.267 40.000 0.00 0.00 38.51 2.62
1136 3622 0.749649 CATCTCCACCTCCTCTTCCG 59.250 60.000 0.00 0.00 0.00 4.30
1285 3771 5.440234 ACGATAGCTATAGACACAACAGG 57.560 43.478 19.31 0.00 42.67 4.00
1294 3780 5.047847 GTGGCACAAAACGATAGCTATAGA 58.952 41.667 19.31 0.00 44.16 1.98
1301 3787 1.201921 GCTCGTGGCACAAAACGATAG 60.202 52.381 19.09 0.00 46.70 2.08
1305 3791 1.369209 CAGCTCGTGGCACAAAACG 60.369 57.895 19.09 2.96 44.16 3.60
1340 3826 2.368311 TTGAACCCCAAACCTACCAC 57.632 50.000 0.00 0.00 0.00 4.16
1422 3908 5.627499 TTTTCTGTCTGTAACATCATGCC 57.373 39.130 0.00 0.00 37.23 4.40
1455 3943 6.440328 ACCAGGCAATGAACAAATAATTAGGT 59.560 34.615 0.00 0.00 0.00 3.08
1464 4358 2.557924 CAGCTACCAGGCAATGAACAAA 59.442 45.455 0.00 0.00 34.17 2.83
1481 4375 1.457346 GCTTGTAACTGGATGCAGCT 58.543 50.000 14.95 4.51 0.00 4.24
1492 4386 5.448632 CCGATTACCAAATGAGGCTTGTAAC 60.449 44.000 0.00 0.00 0.00 2.50
1495 4389 3.016736 CCGATTACCAAATGAGGCTTGT 58.983 45.455 0.00 0.00 0.00 3.16
1497 4391 3.366052 ACCGATTACCAAATGAGGCTT 57.634 42.857 0.00 0.00 0.00 4.35
1511 4405 6.564557 TTTTACCCTAGTCCAATACCGATT 57.435 37.500 0.00 0.00 0.00 3.34
1512 4406 6.408891 CCTTTTTACCCTAGTCCAATACCGAT 60.409 42.308 0.00 0.00 0.00 4.18
1513 4407 5.104817 CCTTTTTACCCTAGTCCAATACCGA 60.105 44.000 0.00 0.00 0.00 4.69
1514 4408 5.121105 CCTTTTTACCCTAGTCCAATACCG 58.879 45.833 0.00 0.00 0.00 4.02
1515 4409 5.443283 CCCTTTTTACCCTAGTCCAATACC 58.557 45.833 0.00 0.00 0.00 2.73
1516 4410 5.044624 ACCCCTTTTTACCCTAGTCCAATAC 60.045 44.000 0.00 0.00 0.00 1.89
1517 4411 5.110206 ACCCCTTTTTACCCTAGTCCAATA 58.890 41.667 0.00 0.00 0.00 1.90
1528 4422 6.720748 TCCATTTTACACTACCCCTTTTTACC 59.279 38.462 0.00 0.00 0.00 2.85
1530 4424 8.959676 AATCCATTTTACACTACCCCTTTTTA 57.040 30.769 0.00 0.00 0.00 1.52
1548 4443 2.039746 TGACGGAACCACAGAATCCATT 59.960 45.455 0.00 0.00 32.58 3.16
1576 4471 4.453136 GGTTCGTTAGTTAACCAGCAATCA 59.547 41.667 0.88 0.00 43.84 2.57
1594 4489 4.180817 TGTCATATGTGTAGCAAGGTTCG 58.819 43.478 1.90 0.00 0.00 3.95
1595 4490 6.683974 AATGTCATATGTGTAGCAAGGTTC 57.316 37.500 1.90 0.00 0.00 3.62
1596 4491 7.466746 AAAATGTCATATGTGTAGCAAGGTT 57.533 32.000 1.90 0.00 0.00 3.50
1597 4492 7.315142 CAAAAATGTCATATGTGTAGCAAGGT 58.685 34.615 1.90 0.00 0.00 3.50
1598 4493 6.753279 CCAAAAATGTCATATGTGTAGCAAGG 59.247 38.462 1.90 0.00 0.00 3.61
1599 4494 7.315142 ACCAAAAATGTCATATGTGTAGCAAG 58.685 34.615 1.90 0.00 0.00 4.01
1600 4495 7.225784 ACCAAAAATGTCATATGTGTAGCAA 57.774 32.000 1.90 0.00 0.00 3.91
1601 4496 6.832520 ACCAAAAATGTCATATGTGTAGCA 57.167 33.333 1.90 0.00 0.00 3.49
1602 4497 6.905076 CGTACCAAAAATGTCATATGTGTAGC 59.095 38.462 1.90 0.00 0.00 3.58
1603 4498 8.192068 TCGTACCAAAAATGTCATATGTGTAG 57.808 34.615 1.90 0.00 0.00 2.74
1604 4499 8.725405 ATCGTACCAAAAATGTCATATGTGTA 57.275 30.769 1.90 0.00 0.00 2.90
1605 4500 7.624360 ATCGTACCAAAAATGTCATATGTGT 57.376 32.000 1.90 0.00 0.00 3.72
1606 4501 8.397906 AGAATCGTACCAAAAATGTCATATGTG 58.602 33.333 1.90 0.00 0.00 3.21
1607 4502 8.506168 AGAATCGTACCAAAAATGTCATATGT 57.494 30.769 1.90 0.00 0.00 2.29
1608 4503 9.225201 CAAGAATCGTACCAAAAATGTCATATG 57.775 33.333 0.00 0.00 0.00 1.78
1609 4504 8.956426 ACAAGAATCGTACCAAAAATGTCATAT 58.044 29.630 0.00 0.00 0.00 1.78
1610 4505 8.330466 ACAAGAATCGTACCAAAAATGTCATA 57.670 30.769 0.00 0.00 0.00 2.15
1611 4506 7.214467 ACAAGAATCGTACCAAAAATGTCAT 57.786 32.000 0.00 0.00 0.00 3.06
1612 4507 6.293735 GGACAAGAATCGTACCAAAAATGTCA 60.294 38.462 12.56 0.00 36.17 3.58
1613 4508 6.084277 GGACAAGAATCGTACCAAAAATGTC 58.916 40.000 0.00 0.00 34.29 3.06
1614 4509 5.334569 CGGACAAGAATCGTACCAAAAATGT 60.335 40.000 0.00 0.00 0.00 2.71
1615 4510 5.086058 CGGACAAGAATCGTACCAAAAATG 58.914 41.667 0.00 0.00 0.00 2.32
1616 4511 4.998672 TCGGACAAGAATCGTACCAAAAAT 59.001 37.500 0.00 0.00 0.00 1.82
1617 4512 4.211794 GTCGGACAAGAATCGTACCAAAAA 59.788 41.667 2.62 0.00 0.00 1.94
1618 4513 3.742369 GTCGGACAAGAATCGTACCAAAA 59.258 43.478 2.62 0.00 0.00 2.44
1619 4514 3.243805 TGTCGGACAAGAATCGTACCAAA 60.244 43.478 8.68 0.00 0.00 3.28
1620 4515 2.296752 TGTCGGACAAGAATCGTACCAA 59.703 45.455 8.68 0.00 0.00 3.67
1621 4516 1.887854 TGTCGGACAAGAATCGTACCA 59.112 47.619 8.68 0.00 0.00 3.25
1622 4517 2.094854 AGTGTCGGACAAGAATCGTACC 60.095 50.000 13.23 0.00 0.00 3.34
1623 4518 2.915463 CAGTGTCGGACAAGAATCGTAC 59.085 50.000 13.23 0.00 0.00 3.67
1624 4519 2.670229 GCAGTGTCGGACAAGAATCGTA 60.670 50.000 13.23 0.00 0.00 3.43
1625 4520 1.935300 GCAGTGTCGGACAAGAATCGT 60.935 52.381 13.23 0.00 0.00 3.73
1626 4521 0.716108 GCAGTGTCGGACAAGAATCG 59.284 55.000 13.23 0.00 0.00 3.34
1627 4522 2.086054 AGCAGTGTCGGACAAGAATC 57.914 50.000 13.23 0.00 0.00 2.52
1628 4523 3.678056 TTAGCAGTGTCGGACAAGAAT 57.322 42.857 13.23 2.62 0.00 2.40
1629 4524 3.006430 TGATTAGCAGTGTCGGACAAGAA 59.994 43.478 13.23 3.47 0.00 2.52
1630 4525 2.560981 TGATTAGCAGTGTCGGACAAGA 59.439 45.455 13.23 0.00 0.00 3.02
1631 4526 2.926200 CTGATTAGCAGTGTCGGACAAG 59.074 50.000 13.23 9.75 39.85 3.16
1632 4527 2.560981 TCTGATTAGCAGTGTCGGACAA 59.439 45.455 13.23 0.00 45.14 3.18
1633 4528 2.094700 GTCTGATTAGCAGTGTCGGACA 60.095 50.000 6.76 6.76 44.07 4.02
1634 4529 2.164624 AGTCTGATTAGCAGTGTCGGAC 59.835 50.000 10.90 10.90 45.14 4.79
1635 4530 2.164422 CAGTCTGATTAGCAGTGTCGGA 59.836 50.000 0.00 0.00 45.14 4.55
1636 4531 2.094494 ACAGTCTGATTAGCAGTGTCGG 60.094 50.000 6.91 0.00 45.14 4.79
1637 4532 3.223423 ACAGTCTGATTAGCAGTGTCG 57.777 47.619 6.91 0.00 45.14 4.35
1638 4533 5.060662 TGTACAGTCTGATTAGCAGTGTC 57.939 43.478 6.91 0.00 45.14 3.67
1639 4534 5.667539 ATGTACAGTCTGATTAGCAGTGT 57.332 39.130 6.91 0.00 45.14 3.55
1640 4535 6.800543 AGTATGTACAGTCTGATTAGCAGTG 58.199 40.000 6.91 0.00 45.14 3.66
1641 4536 7.411486 AAGTATGTACAGTCTGATTAGCAGT 57.589 36.000 6.91 0.00 45.14 4.40
1642 4537 8.079203 CCTAAGTATGTACAGTCTGATTAGCAG 58.921 40.741 6.91 0.00 46.31 4.24
1643 4538 7.778382 TCCTAAGTATGTACAGTCTGATTAGCA 59.222 37.037 6.91 0.00 0.00 3.49
1644 4539 8.167605 TCCTAAGTATGTACAGTCTGATTAGC 57.832 38.462 6.91 0.00 0.00 3.09
1647 4542 9.201989 TCAATCCTAAGTATGTACAGTCTGATT 57.798 33.333 6.91 5.33 0.00 2.57
1648 4543 8.768501 TCAATCCTAAGTATGTACAGTCTGAT 57.231 34.615 6.91 0.00 0.00 2.90
1649 4544 8.589701 TTCAATCCTAAGTATGTACAGTCTGA 57.410 34.615 6.91 0.00 0.00 3.27
1650 4545 7.436673 GCTTCAATCCTAAGTATGTACAGTCTG 59.563 40.741 0.33 0.00 0.00 3.51
1651 4546 7.124298 TGCTTCAATCCTAAGTATGTACAGTCT 59.876 37.037 0.33 0.00 0.00 3.24
1652 4547 7.265673 TGCTTCAATCCTAAGTATGTACAGTC 58.734 38.462 0.33 0.00 0.00 3.51
1653 4548 7.182817 TGCTTCAATCCTAAGTATGTACAGT 57.817 36.000 0.33 0.00 0.00 3.55
1654 4549 9.416794 CTATGCTTCAATCCTAAGTATGTACAG 57.583 37.037 0.33 0.00 32.50 2.74
1655 4550 8.924303 ACTATGCTTCAATCCTAAGTATGTACA 58.076 33.333 0.00 0.00 32.50 2.90
1658 4553 8.924303 TGTACTATGCTTCAATCCTAAGTATGT 58.076 33.333 0.00 0.00 32.50 2.29
1659 4554 9.197694 GTGTACTATGCTTCAATCCTAAGTATG 57.802 37.037 0.00 0.00 32.50 2.39
1660 4555 8.368668 GGTGTACTATGCTTCAATCCTAAGTAT 58.631 37.037 0.00 0.00 34.30 2.12
1661 4556 7.469594 CGGTGTACTATGCTTCAATCCTAAGTA 60.470 40.741 0.00 0.00 0.00 2.24
1662 4557 6.583562 GGTGTACTATGCTTCAATCCTAAGT 58.416 40.000 0.00 0.00 0.00 2.24
1663 4558 5.692204 CGGTGTACTATGCTTCAATCCTAAG 59.308 44.000 0.00 0.00 0.00 2.18
1664 4559 5.597806 CGGTGTACTATGCTTCAATCCTAA 58.402 41.667 0.00 0.00 0.00 2.69
1665 4560 4.500887 GCGGTGTACTATGCTTCAATCCTA 60.501 45.833 0.00 0.00 0.00 2.94
1666 4561 3.741388 GCGGTGTACTATGCTTCAATCCT 60.741 47.826 0.00 0.00 0.00 3.24
1667 4562 2.544267 GCGGTGTACTATGCTTCAATCC 59.456 50.000 0.00 0.00 0.00 3.01
1668 4563 3.458189 AGCGGTGTACTATGCTTCAATC 58.542 45.455 0.00 0.00 32.89 2.67
1669 4564 3.543680 AGCGGTGTACTATGCTTCAAT 57.456 42.857 0.00 0.00 32.89 2.57
1670 4565 3.697542 TCTAGCGGTGTACTATGCTTCAA 59.302 43.478 10.68 0.00 38.82 2.69
1671 4566 3.284617 TCTAGCGGTGTACTATGCTTCA 58.715 45.455 10.68 0.00 38.82 3.02
1672 4567 3.984508 TCTAGCGGTGTACTATGCTTC 57.015 47.619 10.68 0.00 38.82 3.86
1673 4568 4.939052 AATCTAGCGGTGTACTATGCTT 57.061 40.909 10.68 0.00 38.82 3.91
1674 4569 5.071370 AGTAATCTAGCGGTGTACTATGCT 58.929 41.667 0.00 10.35 41.32 3.79
1675 4570 5.373981 AGTAATCTAGCGGTGTACTATGC 57.626 43.478 0.00 0.00 0.00 3.14
1676 4571 5.619513 CGAGTAATCTAGCGGTGTACTATG 58.380 45.833 0.00 0.00 0.00 2.23
1677 4572 4.153835 GCGAGTAATCTAGCGGTGTACTAT 59.846 45.833 0.00 0.00 33.20 2.12
1678 4573 3.496130 GCGAGTAATCTAGCGGTGTACTA 59.504 47.826 0.00 0.00 33.20 1.82
1679 4574 2.290093 GCGAGTAATCTAGCGGTGTACT 59.710 50.000 0.00 0.00 33.20 2.73
1680 4575 2.604132 GGCGAGTAATCTAGCGGTGTAC 60.604 54.545 0.00 0.00 41.94 2.90
1681 4576 1.605710 GGCGAGTAATCTAGCGGTGTA 59.394 52.381 0.00 0.00 41.94 2.90
1682 4577 0.384669 GGCGAGTAATCTAGCGGTGT 59.615 55.000 0.00 0.00 41.94 4.16
1683 4578 0.318784 GGGCGAGTAATCTAGCGGTG 60.319 60.000 0.00 0.00 41.94 4.94
1684 4579 0.467659 AGGGCGAGTAATCTAGCGGT 60.468 55.000 0.00 0.00 41.94 5.68
1685 4580 1.531423 TAGGGCGAGTAATCTAGCGG 58.469 55.000 0.00 0.00 41.94 5.52
1686 4581 2.159366 CCATAGGGCGAGTAATCTAGCG 60.159 54.545 0.00 0.00 41.94 4.26
1687 4582 2.166664 CCCATAGGGCGAGTAATCTAGC 59.833 54.545 0.00 0.00 40.66 3.42
1688 4583 3.698289 TCCCATAGGGCGAGTAATCTAG 58.302 50.000 0.00 0.00 43.94 2.43
1689 4584 3.820195 TCCCATAGGGCGAGTAATCTA 57.180 47.619 0.00 0.00 43.94 1.98
1690 4585 2.696526 TCCCATAGGGCGAGTAATCT 57.303 50.000 0.00 0.00 43.94 2.40
1691 4586 3.676324 CGATTCCCATAGGGCGAGTAATC 60.676 52.174 0.00 0.81 43.94 1.75
1692 4587 2.233922 CGATTCCCATAGGGCGAGTAAT 59.766 50.000 0.00 0.00 43.94 1.89
1693 4588 1.616865 CGATTCCCATAGGGCGAGTAA 59.383 52.381 0.00 0.00 43.94 2.24
1694 4589 1.254026 CGATTCCCATAGGGCGAGTA 58.746 55.000 0.00 0.00 43.94 2.59
1695 4590 1.472662 CCGATTCCCATAGGGCGAGT 61.473 60.000 0.00 0.00 43.94 4.18
1696 4591 1.185618 TCCGATTCCCATAGGGCGAG 61.186 60.000 0.00 0.00 43.94 5.03
1697 4592 1.152419 TCCGATTCCCATAGGGCGA 60.152 57.895 0.00 0.00 43.94 5.54
1698 4593 1.004918 GTCCGATTCCCATAGGGCG 60.005 63.158 0.00 0.00 43.94 6.13
1699 4594 1.640917 TAGTCCGATTCCCATAGGGC 58.359 55.000 0.00 0.00 43.94 5.19
1700 4595 2.969950 TGTTAGTCCGATTCCCATAGGG 59.030 50.000 0.00 0.00 46.11 3.53
1701 4596 4.632153 CTTGTTAGTCCGATTCCCATAGG 58.368 47.826 0.00 0.00 0.00 2.57
1702 4597 4.058817 GCTTGTTAGTCCGATTCCCATAG 58.941 47.826 0.00 0.00 0.00 2.23
1703 4598 3.491964 CGCTTGTTAGTCCGATTCCCATA 60.492 47.826 0.00 0.00 0.00 2.74
1704 4599 2.741878 CGCTTGTTAGTCCGATTCCCAT 60.742 50.000 0.00 0.00 0.00 4.00
1705 4600 1.404986 CGCTTGTTAGTCCGATTCCCA 60.405 52.381 0.00 0.00 0.00 4.37
1706 4601 1.287425 CGCTTGTTAGTCCGATTCCC 58.713 55.000 0.00 0.00 0.00 3.97
1707 4602 0.651031 GCGCTTGTTAGTCCGATTCC 59.349 55.000 0.00 0.00 0.00 3.01
1708 4603 1.324736 CAGCGCTTGTTAGTCCGATTC 59.675 52.381 7.50 0.00 0.00 2.52
1709 4604 1.359848 CAGCGCTTGTTAGTCCGATT 58.640 50.000 7.50 0.00 0.00 3.34
1710 4605 0.460284 CCAGCGCTTGTTAGTCCGAT 60.460 55.000 7.50 0.00 0.00 4.18
1711 4606 1.080093 CCAGCGCTTGTTAGTCCGA 60.080 57.895 7.50 0.00 0.00 4.55
1712 4607 2.100631 CCCAGCGCTTGTTAGTCCG 61.101 63.158 7.50 0.00 0.00 4.79
1713 4608 2.399356 GCCCAGCGCTTGTTAGTCC 61.399 63.158 7.50 0.00 0.00 3.85
1714 4609 3.178539 GCCCAGCGCTTGTTAGTC 58.821 61.111 7.50 0.00 0.00 2.59
1725 4620 2.434359 AACTACTTCGCGCCCAGC 60.434 61.111 0.00 0.00 43.95 4.85
1726 4621 1.078759 CAGAACTACTTCGCGCCCAG 61.079 60.000 0.00 0.00 0.00 4.45
1727 4622 1.080093 CAGAACTACTTCGCGCCCA 60.080 57.895 0.00 0.00 0.00 5.36
1728 4623 0.669625 AACAGAACTACTTCGCGCCC 60.670 55.000 0.00 0.00 0.00 6.13
1729 4624 1.145803 AAACAGAACTACTTCGCGCC 58.854 50.000 0.00 0.00 0.00 6.53
1730 4625 2.985139 AGTAAACAGAACTACTTCGCGC 59.015 45.455 0.00 0.00 0.00 6.86
1731 4626 6.866179 ATTAGTAAACAGAACTACTTCGCG 57.134 37.500 0.00 0.00 30.98 5.87
1732 4627 7.950496 CACAATTAGTAAACAGAACTACTTCGC 59.050 37.037 0.00 0.00 30.98 4.70
1733 4628 8.433126 CCACAATTAGTAAACAGAACTACTTCG 58.567 37.037 0.00 0.00 30.98 3.79
1734 4629 8.718734 CCCACAATTAGTAAACAGAACTACTTC 58.281 37.037 0.00 0.00 30.98 3.01
1735 4630 8.215736 ACCCACAATTAGTAAACAGAACTACTT 58.784 33.333 0.00 0.00 30.98 2.24
1736 4631 7.742767 ACCCACAATTAGTAAACAGAACTACT 58.257 34.615 0.00 0.00 33.06 2.57
1737 4632 7.974482 ACCCACAATTAGTAAACAGAACTAC 57.026 36.000 0.00 0.00 0.00 2.73
1738 4633 9.715121 CTTACCCACAATTAGTAAACAGAACTA 57.285 33.333 0.00 0.00 0.00 2.24
1739 4634 7.664318 CCTTACCCACAATTAGTAAACAGAACT 59.336 37.037 0.00 0.00 0.00 3.01
1740 4635 7.446319 ACCTTACCCACAATTAGTAAACAGAAC 59.554 37.037 0.00 0.00 0.00 3.01
1741 4636 7.519927 ACCTTACCCACAATTAGTAAACAGAA 58.480 34.615 0.00 0.00 0.00 3.02
1742 4637 7.081857 ACCTTACCCACAATTAGTAAACAGA 57.918 36.000 0.00 0.00 0.00 3.41
1743 4638 7.879160 TGTACCTTACCCACAATTAGTAAACAG 59.121 37.037 0.00 0.00 0.00 3.16
1744 4639 7.743749 TGTACCTTACCCACAATTAGTAAACA 58.256 34.615 0.00 0.00 0.00 2.83
1745 4640 8.096414 TCTGTACCTTACCCACAATTAGTAAAC 58.904 37.037 0.00 0.00 0.00 2.01
1746 4641 8.204903 TCTGTACCTTACCCACAATTAGTAAA 57.795 34.615 0.00 0.00 0.00 2.01
1747 4642 7.795534 TCTGTACCTTACCCACAATTAGTAA 57.204 36.000 0.00 0.00 0.00 2.24
1748 4643 7.983166 ATCTGTACCTTACCCACAATTAGTA 57.017 36.000 0.00 0.00 0.00 1.82
1749 4644 6.886178 ATCTGTACCTTACCCACAATTAGT 57.114 37.500 0.00 0.00 0.00 2.24
1750 4645 7.110155 ACAATCTGTACCTTACCCACAATTAG 58.890 38.462 0.00 0.00 0.00 1.73
1751 4646 7.023171 ACAATCTGTACCTTACCCACAATTA 57.977 36.000 0.00 0.00 0.00 1.40
1752 4647 5.887754 ACAATCTGTACCTTACCCACAATT 58.112 37.500 0.00 0.00 0.00 2.32
1753 4648 5.514500 ACAATCTGTACCTTACCCACAAT 57.486 39.130 0.00 0.00 0.00 2.71
1796 4691 5.188327 TCAGCAATCTCTACCTATTGTCG 57.812 43.478 0.00 0.00 35.86 4.35
1799 4694 6.154203 TCACTCAGCAATCTCTACCTATTG 57.846 41.667 0.00 0.00 36.40 1.90
1927 4827 2.082366 GTGCAACAAGGAATGCGCG 61.082 57.895 0.00 0.00 45.47 6.86
1941 4842 0.953727 AAAGAATGCGAGCTTGTGCA 59.046 45.000 10.98 10.98 46.51 4.57
1956 4857 9.855021 CTTTTCCACTACAAAAAGAAGAAAAGA 57.145 29.630 13.82 0.00 42.98 2.52
1986 4888 8.930846 AGGTGAATTTCCATATGAAGGAATAG 57.069 34.615 3.65 0.00 44.14 1.73
1993 4895 8.912988 GGAAACATAGGTGAATTTCCATATGAA 58.087 33.333 18.15 0.00 46.26 2.57
2007 4909 6.712547 AGAAGAAACTCAAGGAAACATAGGTG 59.287 38.462 0.00 0.00 0.00 4.00
2008 4910 6.842676 AGAAGAAACTCAAGGAAACATAGGT 58.157 36.000 0.00 0.00 0.00 3.08
2020 4922 7.394077 TGATATTCCATGCAAGAAGAAACTCAA 59.606 33.333 8.33 0.00 0.00 3.02
2048 4950 7.232534 AGGCAAATTCCATACAGTTCTTAACAA 59.767 33.333 0.00 0.00 0.00 2.83
2071 4975 5.385509 TTCCTTTTTGTGCTAACATAGGC 57.614 39.130 0.00 0.00 35.83 3.93
2094 4998 2.101750 TGTGTCTCCTAGCAAAACGACA 59.898 45.455 0.00 0.00 0.00 4.35
2098 5002 5.412594 TGATGATTGTGTCTCCTAGCAAAAC 59.587 40.000 0.00 0.00 0.00 2.43
2107 5011 5.220548 CGTCTCAATTGATGATTGTGTCTCC 60.221 44.000 8.96 0.00 44.46 3.71
2130 5034 7.596749 AGTGACCATGAAGTATAAACTTTCG 57.403 36.000 0.00 0.00 46.09 3.46
2135 5039 9.216117 ACAGTTTAGTGACCATGAAGTATAAAC 57.784 33.333 0.00 4.71 33.95 2.01
2139 5043 9.959721 ATTTACAGTTTAGTGACCATGAAGTAT 57.040 29.630 0.00 0.00 0.00 2.12
2141 5045 7.719633 ACATTTACAGTTTAGTGACCATGAAGT 59.280 33.333 0.00 0.00 0.00 3.01
2146 5050 6.490040 AGCAACATTTACAGTTTAGTGACCAT 59.510 34.615 0.00 0.00 0.00 3.55
2174 5079 8.725148 AGCATCTTGTACAATAAAGTCAGAAAG 58.275 33.333 9.13 0.00 0.00 2.62
2242 5147 1.801771 CGCACGTTTGATACCCTTTGA 59.198 47.619 0.00 0.00 0.00 2.69
2292 5199 0.940126 GCAAGTGTCATCTATGGGCG 59.060 55.000 0.00 0.00 0.00 6.13
2299 5206 3.777106 TTCTTGAGGCAAGTGTCATCT 57.223 42.857 7.02 0.00 41.66 2.90
2333 5241 6.779115 TCAACGACAATTAATATGGATCGG 57.221 37.500 0.00 0.00 32.56 4.18
2497 5488 0.908910 CAAAGGGGCCCAATAAACCC 59.091 55.000 27.72 2.59 43.69 4.11
2514 5505 5.047377 GGTCCAATTCTGGCTCAAAATACAA 60.047 40.000 0.00 0.00 43.17 2.41
2515 5506 4.462483 GGTCCAATTCTGGCTCAAAATACA 59.538 41.667 0.00 0.00 43.17 2.29
2657 5649 9.717942 TTGGGTTAAAATTTGACCTATGAATTG 57.282 29.630 17.39 0.00 33.90 2.32
2669 5661 9.214957 GTCCCTCTTATTTTGGGTTAAAATTTG 57.785 33.333 3.32 0.00 44.49 2.32
2671 5663 7.737607 AGGTCCCTCTTATTTTGGGTTAAAATT 59.262 33.333 3.32 0.00 44.49 1.82
2673 5665 6.626238 AGGTCCCTCTTATTTTGGGTTAAAA 58.374 36.000 0.00 0.00 42.10 1.52
2674 5666 6.222227 AGGTCCCTCTTATTTTGGGTTAAA 57.778 37.500 0.00 0.00 41.58 1.52
2694 5686 1.758862 CTCCGTCCGGGTTTATTAGGT 59.241 52.381 0.00 0.00 37.00 3.08
2697 5690 1.122227 CCCTCCGTCCGGGTTTATTA 58.878 55.000 0.00 0.00 36.91 0.98
2703 5696 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
2745 5738 2.722094 TGGCAATAAGGTGGTAAGCTG 58.278 47.619 0.00 0.00 33.40 4.24
2768 5762 0.472471 GTTGGTGTTGGAGGTCCTGA 59.528 55.000 0.00 0.00 36.82 3.86
3035 6029 3.055458 TCATTCCATTAGAACGCAGTCCA 60.055 43.478 0.00 0.00 45.00 4.02
3068 6062 1.756024 CACCCCGTTTGTCCCTGTA 59.244 57.895 0.00 0.00 0.00 2.74
3072 6066 1.677637 TTTTGCACCCCGTTTGTCCC 61.678 55.000 0.00 0.00 0.00 4.46
3077 6071 1.187087 TTCTGTTTTGCACCCCGTTT 58.813 45.000 0.00 0.00 0.00 3.60
3084 6078 6.624423 ACATGATAGGAATTCTGTTTTGCAC 58.376 36.000 5.23 0.00 0.00 4.57
3085 6079 6.403527 CGACATGATAGGAATTCTGTTTTGCA 60.404 38.462 5.23 0.00 0.00 4.08
3098 6092 2.265589 TACGGCTCGACATGATAGGA 57.734 50.000 0.00 0.00 0.00 2.94
3103 6097 2.809446 CTGAATTACGGCTCGACATGA 58.191 47.619 0.00 0.00 0.00 3.07
3106 6100 3.044809 GCTGAATTACGGCTCGACA 57.955 52.632 1.50 0.00 46.39 4.35
3123 6117 2.437281 TCAAAGATCTGATCCCTCCTGC 59.563 50.000 13.83 0.00 0.00 4.85
3452 6446 7.766278 CAGCTAACAGAACCTAATATTCACACT 59.234 37.037 0.00 0.00 0.00 3.55
3467 6461 2.303022 CCAAGAGGACCAGCTAACAGAA 59.697 50.000 0.00 0.00 36.89 3.02
3503 6497 0.511221 AGAAACAAATCGTGGACGCG 59.489 50.000 3.53 3.53 39.60 6.01
3507 6501 7.120579 AGCATTATACAAGAAACAAATCGTGGA 59.879 33.333 0.00 0.00 33.77 4.02
3514 6508 9.944376 AGTAGAGAGCATTATACAAGAAACAAA 57.056 29.630 0.00 0.00 0.00 2.83
3550 6544 5.432060 AGGGCTAAACAGGGAAATACATAGT 59.568 40.000 0.00 0.00 0.00 2.12
3554 6548 3.589735 TCAGGGCTAAACAGGGAAATACA 59.410 43.478 0.00 0.00 0.00 2.29
3565 6559 2.159517 CGCTCAACATTCAGGGCTAAAC 60.160 50.000 0.00 0.00 0.00 2.01
3653 6652 5.756195 TTGCTATCAATCAGGCAACATAC 57.244 39.130 0.00 0.00 39.33 2.39
3693 6694 1.153188 TGTGTCCGCCTGCATATGG 60.153 57.895 4.56 0.00 0.00 2.74
3782 6784 0.609131 ACGGGAAATGCCTTCACTGG 60.609 55.000 0.00 0.00 35.03 4.00
3799 6801 9.706691 ATTCATACATCAGGGTATAAAAGTACG 57.293 33.333 0.00 0.00 32.83 3.67
3810 6812 7.136822 TGTAAAGCTATTCATACATCAGGGT 57.863 36.000 0.00 0.00 0.00 4.34
3908 6910 2.589720 TCACATCCCCGTATCGTATGT 58.410 47.619 0.00 0.00 0.00 2.29
4038 7041 3.944015 GCTTGAAGTAGCATCCATGTCTT 59.056 43.478 0.00 0.00 40.89 3.01
4070 7073 1.412710 CGGGTGTACCTGAGTATGCAT 59.587 52.381 3.79 3.79 45.36 3.96
4135 7138 4.168101 TCTTCCTTCTCCTTCCTTTGCTA 58.832 43.478 0.00 0.00 0.00 3.49
4212 7235 3.807553 TGCTGTTGTTGACATCTTCAGA 58.192 40.909 10.44 0.00 37.69 3.27
4307 7349 4.483243 GGGCGCCAGATTTCCGGA 62.483 66.667 30.85 0.00 0.00 5.14
4317 7359 2.359850 GTTCTGTGATGGGCGCCA 60.360 61.111 30.85 15.30 38.19 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.