Multiple sequence alignment - TraesCS2D01G256500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G256500 chr2D 100.000 3414 0 0 1 3414 311547619 311551032 0.000000e+00 6305
1 TraesCS2D01G256500 chr2D 93.782 193 12 0 2559 2751 128025769 128025961 1.200000e-74 291
2 TraesCS2D01G256500 chr2D 92.021 188 13 2 337 522 180927680 180927867 2.610000e-66 263
3 TraesCS2D01G256500 chr2D 90.594 202 11 6 342 539 640640086 640639889 9.400000e-66 261
4 TraesCS2D01G256500 chr2A 94.298 2964 70 28 525 3414 428118762 428121700 0.000000e+00 4446
5 TraesCS2D01G256500 chr2A 91.837 196 12 4 2559 2751 117393210 117393016 1.560000e-68 270
6 TraesCS2D01G256500 chr2B 95.881 2428 66 5 1013 3414 361578936 361576517 0.000000e+00 3899
7 TraesCS2D01G256500 chr2B 97.486 358 5 4 596 950 361579567 361579211 2.910000e-170 608
8 TraesCS2D01G256500 chr2B 90.722 194 17 1 2559 2751 91204915 91205108 1.220000e-64 257
9 TraesCS2D01G256500 chr3D 92.708 192 12 2 2561 2751 436020076 436020266 3.360000e-70 276
10 TraesCS2D01G256500 chr3D 92.391 184 12 1 341 522 388314633 388314816 9.400000e-66 261
11 TraesCS2D01G256500 chr1A 91.000 200 17 1 2553 2751 440899059 440899258 5.620000e-68 268
12 TraesCS2D01G256500 chr1D 92.896 183 12 1 341 522 176953156 176952974 7.260000e-67 265
13 TraesCS2D01G256500 chr6A 91.192 193 17 0 2559 2751 549989978 549989786 2.610000e-66 263
14 TraesCS2D01G256500 chr4D 91.623 191 14 2 334 522 503922015 503922205 2.610000e-66 263
15 TraesCS2D01G256500 chr7B 92.391 184 13 1 340 522 713680979 713680796 9.400000e-66 261
16 TraesCS2D01G256500 chr7B 91.935 186 13 2 339 522 657200456 657200641 3.380000e-65 259
17 TraesCS2D01G256500 chr7D 91.579 190 13 3 336 522 171071780 171071591 3.380000e-65 259
18 TraesCS2D01G256500 chr5D 90.816 196 15 3 329 522 28162070 28162264 3.380000e-65 259
19 TraesCS2D01G256500 chr5D 88.235 136 15 1 50 184 370362255 370362120 9.800000e-36 161
20 TraesCS2D01G256500 chr4B 88.018 217 21 5 2550 2763 601794809 601795023 5.660000e-63 252
21 TraesCS2D01G256500 chr6B 88.889 162 16 2 59 219 317748233 317748073 7.470000e-47 198
22 TraesCS2D01G256500 chr6B 90.000 150 14 1 50 198 455145829 455145978 3.480000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G256500 chr2D 311547619 311551032 3413 False 6305.0 6305 100.0000 1 3414 1 chr2D.!!$F3 3413
1 TraesCS2D01G256500 chr2A 428118762 428121700 2938 False 4446.0 4446 94.2980 525 3414 1 chr2A.!!$F1 2889
2 TraesCS2D01G256500 chr2B 361576517 361579567 3050 True 2253.5 3899 96.6835 596 3414 2 chr2B.!!$R1 2818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.029300 CGTGTTGCTGGTCTGTTTGG 59.971 55.0 0.0 0.0 0.00 3.28 F
458 459 0.109913 AGTCCCTCCCGTTTGGTTTC 59.890 55.0 0.0 0.0 34.77 2.78 F
459 460 0.109913 GTCCCTCCCGTTTGGTTTCT 59.890 55.0 0.0 0.0 34.77 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 1926 0.393077 CGTCTTGGTGACCCTGAACT 59.607 55.000 0.00 0.00 42.49 3.01 R
2281 2559 1.623811 ACGCCATACTGAACAGAAGGT 59.376 47.619 8.87 0.00 0.00 3.50 R
2431 2709 5.488341 ACCAGGCTGGCTAATAATAATACG 58.512 41.667 33.04 4.07 42.67 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.003718 ACAGACCTAAAGGCGTGGC 60.004 57.895 0.00 0.00 39.32 5.01
19 20 2.100631 CAGACCTAAAGGCGTGGCG 61.101 63.158 0.00 0.00 39.32 5.69
20 21 2.818274 GACCTAAAGGCGTGGCGG 60.818 66.667 0.00 0.00 39.32 6.13
40 41 2.293399 GGCCCAGCCTAATTTATTGTCG 59.707 50.000 0.00 0.00 46.69 4.35
41 42 2.293399 GCCCAGCCTAATTTATTGTCGG 59.707 50.000 0.00 0.00 0.00 4.79
42 43 3.815809 CCCAGCCTAATTTATTGTCGGA 58.184 45.455 0.00 0.00 0.00 4.55
43 44 4.204012 CCCAGCCTAATTTATTGTCGGAA 58.796 43.478 0.00 0.00 0.00 4.30
44 45 4.275936 CCCAGCCTAATTTATTGTCGGAAG 59.724 45.833 0.00 0.00 0.00 3.46
45 46 4.261197 CCAGCCTAATTTATTGTCGGAAGC 60.261 45.833 0.00 0.00 0.00 3.86
46 47 4.576463 CAGCCTAATTTATTGTCGGAAGCT 59.424 41.667 0.00 0.00 0.00 3.74
47 48 4.816925 AGCCTAATTTATTGTCGGAAGCTC 59.183 41.667 0.00 0.00 0.00 4.09
48 49 4.318831 GCCTAATTTATTGTCGGAAGCTCG 60.319 45.833 0.00 0.00 0.00 5.03
49 50 4.211374 CCTAATTTATTGTCGGAAGCTCGG 59.789 45.833 0.00 0.00 0.00 4.63
50 51 2.754946 TTTATTGTCGGAAGCTCGGT 57.245 45.000 0.00 0.00 0.00 4.69
51 52 2.754946 TTATTGTCGGAAGCTCGGTT 57.245 45.000 0.00 0.00 0.00 4.44
52 53 3.872511 TTATTGTCGGAAGCTCGGTTA 57.127 42.857 0.00 0.00 0.00 2.85
53 54 2.295253 ATTGTCGGAAGCTCGGTTAG 57.705 50.000 0.00 0.00 0.00 2.34
54 55 0.245539 TTGTCGGAAGCTCGGTTAGG 59.754 55.000 0.00 0.00 0.00 2.69
55 56 0.896940 TGTCGGAAGCTCGGTTAGGT 60.897 55.000 0.00 0.00 37.60 3.08
56 57 0.179142 GTCGGAAGCTCGGTTAGGTC 60.179 60.000 0.00 0.00 33.87 3.85
57 58 1.226603 CGGAAGCTCGGTTAGGTCG 60.227 63.158 0.00 0.00 33.87 4.79
58 59 1.888736 GGAAGCTCGGTTAGGTCGT 59.111 57.895 0.00 0.00 33.87 4.34
59 60 1.098050 GGAAGCTCGGTTAGGTCGTA 58.902 55.000 0.00 0.00 33.87 3.43
60 61 1.474077 GGAAGCTCGGTTAGGTCGTAA 59.526 52.381 0.00 0.00 33.87 3.18
61 62 2.100418 GGAAGCTCGGTTAGGTCGTAAT 59.900 50.000 0.00 0.00 33.87 1.89
62 63 3.316308 GGAAGCTCGGTTAGGTCGTAATA 59.684 47.826 0.00 0.00 33.87 0.98
63 64 3.978718 AGCTCGGTTAGGTCGTAATAC 57.021 47.619 0.00 0.00 0.00 1.89
64 65 3.282021 AGCTCGGTTAGGTCGTAATACA 58.718 45.455 0.00 0.00 0.00 2.29
65 66 3.314635 AGCTCGGTTAGGTCGTAATACAG 59.685 47.826 0.00 0.00 0.00 2.74
66 67 3.313526 GCTCGGTTAGGTCGTAATACAGA 59.686 47.826 0.00 0.00 0.00 3.41
67 68 4.201950 GCTCGGTTAGGTCGTAATACAGAA 60.202 45.833 0.00 0.00 0.00 3.02
68 69 5.235305 TCGGTTAGGTCGTAATACAGAAC 57.765 43.478 0.00 0.00 0.00 3.01
69 70 4.031028 CGGTTAGGTCGTAATACAGAACG 58.969 47.826 0.00 0.00 40.40 3.95
70 71 4.201812 CGGTTAGGTCGTAATACAGAACGA 60.202 45.833 0.00 0.00 45.17 3.85
75 76 3.745332 TCGTAATACAGAACGAAGCGA 57.255 42.857 0.00 0.00 44.47 4.93
76 77 3.419915 TCGTAATACAGAACGAAGCGAC 58.580 45.455 0.00 0.00 44.47 5.19
77 78 3.125829 TCGTAATACAGAACGAAGCGACT 59.874 43.478 0.00 0.00 44.47 4.18
78 79 3.237660 CGTAATACAGAACGAAGCGACTG 59.762 47.826 13.34 13.34 41.55 3.51
79 80 3.299340 AATACAGAACGAAGCGACTGT 57.701 42.857 19.85 19.85 43.92 3.55
80 81 4.430137 AATACAGAACGAAGCGACTGTA 57.570 40.909 21.70 21.70 44.81 2.74
81 82 2.047679 ACAGAACGAAGCGACTGTAC 57.952 50.000 16.77 0.00 41.87 2.90
82 83 0.975544 CAGAACGAAGCGACTGTACG 59.024 55.000 0.00 0.00 33.55 3.67
83 84 0.590195 AGAACGAAGCGACTGTACGT 59.410 50.000 0.00 0.00 38.81 3.57
84 85 0.701303 GAACGAAGCGACTGTACGTG 59.299 55.000 0.00 0.00 37.28 4.49
85 86 0.308684 AACGAAGCGACTGTACGTGA 59.691 50.000 0.00 0.00 37.28 4.35
86 87 0.110328 ACGAAGCGACTGTACGTGAG 60.110 55.000 0.00 0.00 35.91 3.51
87 88 0.165295 CGAAGCGACTGTACGTGAGA 59.835 55.000 0.00 0.00 35.59 3.27
88 89 1.202043 CGAAGCGACTGTACGTGAGAT 60.202 52.381 0.00 0.00 35.59 2.75
89 90 2.728225 CGAAGCGACTGTACGTGAGATT 60.728 50.000 0.00 0.00 35.59 2.40
90 91 3.484721 CGAAGCGACTGTACGTGAGATTA 60.485 47.826 0.00 0.00 35.59 1.75
91 92 4.409570 GAAGCGACTGTACGTGAGATTAA 58.590 43.478 0.00 0.00 35.59 1.40
92 93 4.017380 AGCGACTGTACGTGAGATTAAG 57.983 45.455 0.00 0.00 35.59 1.85
93 94 3.688185 AGCGACTGTACGTGAGATTAAGA 59.312 43.478 0.00 0.00 35.59 2.10
94 95 4.029704 GCGACTGTACGTGAGATTAAGAG 58.970 47.826 0.00 0.00 35.59 2.85
95 96 4.029704 CGACTGTACGTGAGATTAAGAGC 58.970 47.826 0.00 0.00 0.00 4.09
96 97 4.201832 CGACTGTACGTGAGATTAAGAGCT 60.202 45.833 0.00 0.00 0.00 4.09
97 98 5.006455 CGACTGTACGTGAGATTAAGAGCTA 59.994 44.000 0.00 0.00 0.00 3.32
98 99 6.456584 CGACTGTACGTGAGATTAAGAGCTAA 60.457 42.308 0.00 0.00 0.00 3.09
99 100 7.336161 ACTGTACGTGAGATTAAGAGCTAAT 57.664 36.000 0.00 0.00 32.60 1.73
100 101 7.419204 ACTGTACGTGAGATTAAGAGCTAATC 58.581 38.462 0.00 0.18 44.40 1.75
109 110 5.539048 GATTAAGAGCTAATCTAACGGCCA 58.461 41.667 2.24 0.00 41.88 5.36
110 111 3.460857 AAGAGCTAATCTAACGGCCAG 57.539 47.619 2.24 0.00 37.23 4.85
111 112 2.667470 AGAGCTAATCTAACGGCCAGA 58.333 47.619 2.24 0.00 36.10 3.86
112 113 3.031736 AGAGCTAATCTAACGGCCAGAA 58.968 45.455 2.24 0.00 36.10 3.02
113 114 3.451178 AGAGCTAATCTAACGGCCAGAAA 59.549 43.478 2.24 0.00 36.10 2.52
114 115 3.798202 AGCTAATCTAACGGCCAGAAAG 58.202 45.455 2.24 1.95 0.00 2.62
115 116 3.451178 AGCTAATCTAACGGCCAGAAAGA 59.549 43.478 2.24 0.00 0.00 2.52
116 117 4.101741 AGCTAATCTAACGGCCAGAAAGAT 59.898 41.667 2.24 2.07 0.00 2.40
117 118 4.449405 GCTAATCTAACGGCCAGAAAGATC 59.551 45.833 2.24 0.00 0.00 2.75
118 119 4.762289 AATCTAACGGCCAGAAAGATCT 57.238 40.909 2.24 0.00 35.88 2.75
119 120 5.871396 AATCTAACGGCCAGAAAGATCTA 57.129 39.130 2.24 0.00 33.50 1.98
120 121 5.871396 ATCTAACGGCCAGAAAGATCTAA 57.129 39.130 2.24 0.00 33.50 2.10
121 122 5.670792 TCTAACGGCCAGAAAGATCTAAA 57.329 39.130 2.24 0.00 33.50 1.85
122 123 6.045072 TCTAACGGCCAGAAAGATCTAAAA 57.955 37.500 2.24 0.00 33.50 1.52
123 124 6.106673 TCTAACGGCCAGAAAGATCTAAAAG 58.893 40.000 2.24 0.00 33.50 2.27
124 125 4.287766 ACGGCCAGAAAGATCTAAAAGT 57.712 40.909 2.24 0.00 33.50 2.66
125 126 4.003648 ACGGCCAGAAAGATCTAAAAGTG 58.996 43.478 2.24 0.00 33.50 3.16
126 127 3.375299 CGGCCAGAAAGATCTAAAAGTGG 59.625 47.826 2.24 0.40 33.50 4.00
127 128 4.336280 GGCCAGAAAGATCTAAAAGTGGT 58.664 43.478 0.00 0.00 33.50 4.16
128 129 4.156739 GGCCAGAAAGATCTAAAAGTGGTG 59.843 45.833 0.00 0.00 33.50 4.17
129 130 5.003804 GCCAGAAAGATCTAAAAGTGGTGA 58.996 41.667 0.00 0.00 33.50 4.02
130 131 5.649831 GCCAGAAAGATCTAAAAGTGGTGAT 59.350 40.000 0.00 0.00 33.50 3.06
131 132 6.183360 GCCAGAAAGATCTAAAAGTGGTGATC 60.183 42.308 0.00 0.00 36.51 2.92
132 133 6.036517 CCAGAAAGATCTAAAAGTGGTGATCG 59.963 42.308 0.00 0.00 39.93 3.69
133 134 6.036517 CAGAAAGATCTAAAAGTGGTGATCGG 59.963 42.308 0.00 0.00 39.93 4.18
134 135 5.677319 AAGATCTAAAAGTGGTGATCGGA 57.323 39.130 0.00 0.00 39.93 4.55
135 136 5.012328 AGATCTAAAAGTGGTGATCGGAC 57.988 43.478 0.00 0.00 39.93 4.79
136 137 3.226346 TCTAAAAGTGGTGATCGGACG 57.774 47.619 0.00 0.00 0.00 4.79
137 138 2.094390 TCTAAAAGTGGTGATCGGACGG 60.094 50.000 0.00 0.00 0.00 4.79
138 139 0.953960 AAAAGTGGTGATCGGACGGC 60.954 55.000 0.00 0.00 0.00 5.68
139 140 1.827399 AAAGTGGTGATCGGACGGCT 61.827 55.000 0.00 0.00 0.00 5.52
140 141 2.507110 AAGTGGTGATCGGACGGCTG 62.507 60.000 0.00 0.00 0.00 4.85
141 142 4.451150 TGGTGATCGGACGGCTGC 62.451 66.667 0.00 0.00 0.00 5.25
142 143 4.148825 GGTGATCGGACGGCTGCT 62.149 66.667 0.00 0.00 0.00 4.24
143 144 2.782222 GGTGATCGGACGGCTGCTA 61.782 63.158 0.00 0.00 0.00 3.49
144 145 1.141019 GTGATCGGACGGCTGCTAA 59.859 57.895 0.00 0.00 0.00 3.09
145 146 1.141019 TGATCGGACGGCTGCTAAC 59.859 57.895 0.00 0.00 0.00 2.34
146 147 1.944676 GATCGGACGGCTGCTAACG 60.945 63.158 0.00 0.00 0.00 3.18
147 148 4.789075 TCGGACGGCTGCTAACGC 62.789 66.667 0.00 0.00 0.00 4.84
148 149 4.796231 CGGACGGCTGCTAACGCT 62.796 66.667 0.00 0.00 36.97 5.07
149 150 3.188786 GGACGGCTGCTAACGCTG 61.189 66.667 0.00 0.00 39.62 5.18
150 151 3.188786 GACGGCTGCTAACGCTGG 61.189 66.667 0.00 0.00 38.07 4.85
151 152 3.934391 GACGGCTGCTAACGCTGGT 62.934 63.158 0.00 0.00 38.07 4.00
152 153 3.490759 CGGCTGCTAACGCTGGTG 61.491 66.667 0.00 0.00 35.83 4.17
153 154 3.127533 GGCTGCTAACGCTGGTGG 61.128 66.667 0.00 0.00 35.83 4.61
154 155 3.804193 GCTGCTAACGCTGGTGGC 61.804 66.667 0.00 0.00 35.83 5.01
155 156 3.127533 CTGCTAACGCTGGTGGCC 61.128 66.667 0.00 0.00 37.74 5.36
156 157 3.612247 CTGCTAACGCTGGTGGCCT 62.612 63.158 3.32 0.00 37.74 5.19
157 158 3.127533 GCTAACGCTGGTGGCCTG 61.128 66.667 3.32 0.00 37.74 4.85
158 159 2.662596 CTAACGCTGGTGGCCTGA 59.337 61.111 3.32 0.00 37.74 3.86
159 160 1.448540 CTAACGCTGGTGGCCTGAG 60.449 63.158 3.32 0.00 37.74 3.35
160 161 1.888436 CTAACGCTGGTGGCCTGAGA 61.888 60.000 3.32 0.00 37.74 3.27
161 162 1.888436 TAACGCTGGTGGCCTGAGAG 61.888 60.000 3.32 1.10 37.74 3.20
162 163 4.463879 CGCTGGTGGCCTGAGAGG 62.464 72.222 3.32 0.00 38.80 3.69
163 164 4.106925 GCTGGTGGCCTGAGAGGG 62.107 72.222 3.32 0.00 35.37 4.30
164 165 2.608988 CTGGTGGCCTGAGAGGGT 60.609 66.667 3.32 0.00 35.37 4.34
165 166 1.306141 CTGGTGGCCTGAGAGGGTA 60.306 63.158 3.32 0.00 35.37 3.69
166 167 1.306141 TGGTGGCCTGAGAGGGTAG 60.306 63.158 3.32 0.00 35.37 3.18
167 168 2.066999 GGTGGCCTGAGAGGGTAGG 61.067 68.421 3.32 0.00 35.37 3.18
168 169 1.001760 GTGGCCTGAGAGGGTAGGA 59.998 63.158 3.32 0.00 35.37 2.94
169 170 0.617820 GTGGCCTGAGAGGGTAGGAA 60.618 60.000 3.32 0.00 35.37 3.36
170 171 0.118346 TGGCCTGAGAGGGTAGGAAA 59.882 55.000 3.32 0.00 35.37 3.13
171 172 1.286248 GGCCTGAGAGGGTAGGAAAA 58.714 55.000 0.00 0.00 35.37 2.29
172 173 1.847088 GGCCTGAGAGGGTAGGAAAAT 59.153 52.381 0.00 0.00 35.37 1.82
173 174 2.242452 GGCCTGAGAGGGTAGGAAAATT 59.758 50.000 0.00 0.00 35.37 1.82
174 175 3.282885 GCCTGAGAGGGTAGGAAAATTG 58.717 50.000 0.00 0.00 35.37 2.32
175 176 3.282885 CCTGAGAGGGTAGGAAAATTGC 58.717 50.000 0.00 0.00 36.11 3.56
176 177 3.054065 CCTGAGAGGGTAGGAAAATTGCT 60.054 47.826 0.00 0.00 36.11 3.91
177 178 4.195416 CTGAGAGGGTAGGAAAATTGCTC 58.805 47.826 0.00 0.00 0.00 4.26
178 179 3.587061 TGAGAGGGTAGGAAAATTGCTCA 59.413 43.478 0.00 0.00 0.00 4.26
179 180 4.195416 GAGAGGGTAGGAAAATTGCTCAG 58.805 47.826 0.00 0.00 0.00 3.35
180 181 3.589288 AGAGGGTAGGAAAATTGCTCAGT 59.411 43.478 0.00 0.00 0.00 3.41
181 182 4.043435 AGAGGGTAGGAAAATTGCTCAGTT 59.957 41.667 0.00 0.00 0.00 3.16
182 183 5.250774 AGAGGGTAGGAAAATTGCTCAGTTA 59.749 40.000 0.00 0.00 0.00 2.24
183 184 6.069381 AGAGGGTAGGAAAATTGCTCAGTTAT 60.069 38.462 0.00 0.00 0.00 1.89
184 185 7.127339 AGAGGGTAGGAAAATTGCTCAGTTATA 59.873 37.037 0.00 0.00 0.00 0.98
185 186 7.283329 AGGGTAGGAAAATTGCTCAGTTATAG 58.717 38.462 0.00 0.00 0.00 1.31
186 187 7.054751 GGGTAGGAAAATTGCTCAGTTATAGT 58.945 38.462 0.00 0.00 0.00 2.12
187 188 7.012421 GGGTAGGAAAATTGCTCAGTTATAGTG 59.988 40.741 0.00 0.00 0.00 2.74
188 189 7.553044 GGTAGGAAAATTGCTCAGTTATAGTGT 59.447 37.037 0.00 0.00 0.00 3.55
189 190 9.595823 GTAGGAAAATTGCTCAGTTATAGTGTA 57.404 33.333 0.00 0.00 0.00 2.90
190 191 8.494016 AGGAAAATTGCTCAGTTATAGTGTAC 57.506 34.615 0.00 0.00 0.00 2.90
191 192 8.322091 AGGAAAATTGCTCAGTTATAGTGTACT 58.678 33.333 0.00 0.00 0.00 2.73
192 193 8.947115 GGAAAATTGCTCAGTTATAGTGTACTT 58.053 33.333 0.00 0.00 0.00 2.24
215 216 9.316730 ACTTAAATTATATGCAAATTGTGGCTG 57.683 29.630 0.00 0.00 0.00 4.85
216 217 9.316730 CTTAAATTATATGCAAATTGTGGCTGT 57.683 29.630 0.00 0.00 0.00 4.40
217 218 9.664332 TTAAATTATATGCAAATTGTGGCTGTT 57.336 25.926 0.00 0.00 0.00 3.16
218 219 7.542534 AATTATATGCAAATTGTGGCTGTTG 57.457 32.000 0.00 0.00 0.00 3.33
219 220 2.172851 ATGCAAATTGTGGCTGTTGG 57.827 45.000 0.00 0.00 0.00 3.77
220 221 0.532417 TGCAAATTGTGGCTGTTGGC 60.532 50.000 0.00 0.00 40.90 4.52
230 231 2.877975 GCTGTTGGCCTGATGATGT 58.122 52.632 3.32 0.00 34.27 3.06
231 232 0.454600 GCTGTTGGCCTGATGATGTG 59.545 55.000 3.32 0.00 34.27 3.21
232 233 1.100510 CTGTTGGCCTGATGATGTGG 58.899 55.000 3.32 0.00 0.00 4.17
233 234 0.405198 TGTTGGCCTGATGATGTGGT 59.595 50.000 3.32 0.00 0.00 4.16
234 235 1.203038 TGTTGGCCTGATGATGTGGTT 60.203 47.619 3.32 0.00 0.00 3.67
235 236 1.203052 GTTGGCCTGATGATGTGGTTG 59.797 52.381 3.32 0.00 0.00 3.77
236 237 0.966875 TGGCCTGATGATGTGGTTGC 60.967 55.000 3.32 0.00 0.00 4.17
237 238 1.430632 GCCTGATGATGTGGTTGCG 59.569 57.895 0.00 0.00 0.00 4.85
238 239 1.430632 CCTGATGATGTGGTTGCGC 59.569 57.895 0.00 0.00 0.00 6.09
239 240 1.028330 CCTGATGATGTGGTTGCGCT 61.028 55.000 9.73 0.00 0.00 5.92
240 241 1.655484 CTGATGATGTGGTTGCGCTA 58.345 50.000 9.73 0.00 0.00 4.26
241 242 2.216046 CTGATGATGTGGTTGCGCTAT 58.784 47.619 9.73 0.00 0.00 2.97
242 243 1.941975 TGATGATGTGGTTGCGCTATG 59.058 47.619 9.73 0.00 0.00 2.23
243 244 1.942657 GATGATGTGGTTGCGCTATGT 59.057 47.619 9.73 0.00 0.00 2.29
244 245 1.085893 TGATGTGGTTGCGCTATGTG 58.914 50.000 9.73 0.00 0.00 3.21
245 246 0.248215 GATGTGGTTGCGCTATGTGC 60.248 55.000 9.73 0.00 39.75 4.57
254 255 4.751539 GCTATGTGCGTGTTGCTG 57.248 55.556 0.00 0.00 46.63 4.41
255 256 1.135315 GCTATGTGCGTGTTGCTGG 59.865 57.895 0.00 0.00 46.63 4.85
256 257 1.577328 GCTATGTGCGTGTTGCTGGT 61.577 55.000 0.00 0.00 46.63 4.00
257 258 0.443869 CTATGTGCGTGTTGCTGGTC 59.556 55.000 0.00 0.00 46.63 4.02
258 259 0.034756 TATGTGCGTGTTGCTGGTCT 59.965 50.000 0.00 0.00 46.63 3.85
259 260 1.509644 ATGTGCGTGTTGCTGGTCTG 61.510 55.000 0.00 0.00 46.63 3.51
260 261 2.180204 GTGCGTGTTGCTGGTCTGT 61.180 57.895 0.00 0.00 46.63 3.41
261 262 1.451207 TGCGTGTTGCTGGTCTGTT 60.451 52.632 0.00 0.00 46.63 3.16
262 263 1.029408 TGCGTGTTGCTGGTCTGTTT 61.029 50.000 0.00 0.00 46.63 2.83
263 264 0.592247 GCGTGTTGCTGGTCTGTTTG 60.592 55.000 0.00 0.00 41.73 2.93
264 265 0.029300 CGTGTTGCTGGTCTGTTTGG 59.971 55.000 0.00 0.00 0.00 3.28
265 266 1.102978 GTGTTGCTGGTCTGTTTGGT 58.897 50.000 0.00 0.00 0.00 3.67
266 267 2.294074 GTGTTGCTGGTCTGTTTGGTA 58.706 47.619 0.00 0.00 0.00 3.25
267 268 2.032924 GTGTTGCTGGTCTGTTTGGTAC 59.967 50.000 0.00 0.00 0.00 3.34
268 269 2.092646 TGTTGCTGGTCTGTTTGGTACT 60.093 45.455 0.00 0.00 0.00 2.73
269 270 2.949644 GTTGCTGGTCTGTTTGGTACTT 59.050 45.455 0.00 0.00 0.00 2.24
270 271 3.290948 TGCTGGTCTGTTTGGTACTTT 57.709 42.857 0.00 0.00 0.00 2.66
271 272 2.948979 TGCTGGTCTGTTTGGTACTTTG 59.051 45.455 0.00 0.00 0.00 2.77
272 273 2.287608 GCTGGTCTGTTTGGTACTTTGC 60.288 50.000 0.00 0.00 0.00 3.68
273 274 2.293399 CTGGTCTGTTTGGTACTTTGCC 59.707 50.000 0.00 0.00 0.00 4.52
274 275 2.303175 GGTCTGTTTGGTACTTTGCCA 58.697 47.619 0.00 0.00 0.00 4.92
275 276 2.890945 GGTCTGTTTGGTACTTTGCCAT 59.109 45.455 0.00 0.00 35.71 4.40
276 277 4.076394 GGTCTGTTTGGTACTTTGCCATA 58.924 43.478 0.00 0.00 35.71 2.74
277 278 4.705023 GGTCTGTTTGGTACTTTGCCATAT 59.295 41.667 0.00 0.00 35.71 1.78
278 279 5.393027 GGTCTGTTTGGTACTTTGCCATATG 60.393 44.000 0.00 0.00 35.71 1.78
279 280 4.704540 TCTGTTTGGTACTTTGCCATATGG 59.295 41.667 18.07 18.07 35.71 2.74
280 281 4.411927 TGTTTGGTACTTTGCCATATGGT 58.588 39.130 22.79 5.34 35.71 3.55
281 282 4.835615 TGTTTGGTACTTTGCCATATGGTT 59.164 37.500 22.79 5.56 35.71 3.67
282 283 5.305644 TGTTTGGTACTTTGCCATATGGTTT 59.694 36.000 22.79 5.88 35.71 3.27
283 284 6.183361 TGTTTGGTACTTTGCCATATGGTTTT 60.183 34.615 22.79 6.22 35.71 2.43
284 285 7.015292 TGTTTGGTACTTTGCCATATGGTTTTA 59.985 33.333 22.79 4.97 35.71 1.52
285 286 7.726033 TTGGTACTTTGCCATATGGTTTTAT 57.274 32.000 22.79 9.05 35.71 1.40
286 287 7.726033 TGGTACTTTGCCATATGGTTTTATT 57.274 32.000 22.79 6.40 37.57 1.40
287 288 8.140112 TGGTACTTTGCCATATGGTTTTATTT 57.860 30.769 22.79 4.89 37.57 1.40
288 289 9.256228 TGGTACTTTGCCATATGGTTTTATTTA 57.744 29.630 22.79 3.99 37.57 1.40
336 337 9.804758 TTTTTAATAAAAAGGCTGTTTCTCGAA 57.195 25.926 5.80 0.00 36.02 3.71
337 338 9.458374 TTTTAATAAAAAGGCTGTTTCTCGAAG 57.542 29.630 5.80 0.00 31.04 3.79
338 339 6.635030 AATAAAAAGGCTGTTTCTCGAAGT 57.365 33.333 5.80 0.00 0.00 3.01
339 340 4.553756 AAAAAGGCTGTTTCTCGAAGTC 57.446 40.909 0.00 0.00 0.00 3.01
340 341 3.477210 AAAGGCTGTTTCTCGAAGTCT 57.523 42.857 0.00 0.00 0.00 3.24
341 342 4.602340 AAAGGCTGTTTCTCGAAGTCTA 57.398 40.909 0.00 0.00 0.00 2.59
342 343 3.859411 AGGCTGTTTCTCGAAGTCTAG 57.141 47.619 0.00 0.00 0.00 2.43
343 344 2.494073 AGGCTGTTTCTCGAAGTCTAGG 59.506 50.000 0.00 0.00 0.00 3.02
344 345 2.417515 GGCTGTTTCTCGAAGTCTAGGG 60.418 54.545 0.00 0.00 0.00 3.53
345 346 2.417515 GCTGTTTCTCGAAGTCTAGGGG 60.418 54.545 0.00 0.00 0.00 4.79
346 347 2.166664 CTGTTTCTCGAAGTCTAGGGGG 59.833 54.545 0.00 0.00 0.00 5.40
347 348 2.177734 GTTTCTCGAAGTCTAGGGGGT 58.822 52.381 0.00 0.00 0.00 4.95
348 349 1.848652 TTCTCGAAGTCTAGGGGGTG 58.151 55.000 0.00 0.00 0.00 4.61
349 350 0.702902 TCTCGAAGTCTAGGGGGTGT 59.297 55.000 0.00 0.00 0.00 4.16
350 351 1.076677 TCTCGAAGTCTAGGGGGTGTT 59.923 52.381 0.00 0.00 0.00 3.32
351 352 1.900486 CTCGAAGTCTAGGGGGTGTTT 59.100 52.381 0.00 0.00 0.00 2.83
352 353 1.621814 TCGAAGTCTAGGGGGTGTTTG 59.378 52.381 0.00 0.00 0.00 2.93
353 354 1.338769 CGAAGTCTAGGGGGTGTTTGG 60.339 57.143 0.00 0.00 0.00 3.28
354 355 1.703513 GAAGTCTAGGGGGTGTTTGGT 59.296 52.381 0.00 0.00 0.00 3.67
355 356 1.829138 AGTCTAGGGGGTGTTTGGTT 58.171 50.000 0.00 0.00 0.00 3.67
356 357 1.703513 AGTCTAGGGGGTGTTTGGTTC 59.296 52.381 0.00 0.00 0.00 3.62
357 358 1.422402 GTCTAGGGGGTGTTTGGTTCA 59.578 52.381 0.00 0.00 0.00 3.18
358 359 1.702957 TCTAGGGGGTGTTTGGTTCAG 59.297 52.381 0.00 0.00 0.00 3.02
359 360 1.702957 CTAGGGGGTGTTTGGTTCAGA 59.297 52.381 0.00 0.00 0.00 3.27
360 361 0.930726 AGGGGGTGTTTGGTTCAGAA 59.069 50.000 0.00 0.00 0.00 3.02
361 362 1.133482 AGGGGGTGTTTGGTTCAGAAG 60.133 52.381 0.00 0.00 0.00 2.85
362 363 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
363 364 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
364 365 2.650322 GGGTGTTTGGTTCAGAAGTCA 58.350 47.619 0.00 0.00 0.00 3.41
365 366 3.222603 GGGTGTTTGGTTCAGAAGTCAT 58.777 45.455 0.00 0.00 0.00 3.06
366 367 4.394729 GGGTGTTTGGTTCAGAAGTCATA 58.605 43.478 0.00 0.00 0.00 2.15
367 368 4.455877 GGGTGTTTGGTTCAGAAGTCATAG 59.544 45.833 0.00 0.00 0.00 2.23
368 369 4.455877 GGTGTTTGGTTCAGAAGTCATAGG 59.544 45.833 0.00 0.00 0.00 2.57
369 370 5.305585 GTGTTTGGTTCAGAAGTCATAGGA 58.694 41.667 0.00 0.00 0.00 2.94
370 371 5.179555 GTGTTTGGTTCAGAAGTCATAGGAC 59.820 44.000 0.00 0.00 44.66 3.85
402 403 4.828829 TCCGAGGGACTAATCAAAAAGAC 58.171 43.478 0.00 0.00 41.55 3.01
403 404 4.530946 TCCGAGGGACTAATCAAAAAGACT 59.469 41.667 0.00 0.00 41.55 3.24
404 405 4.870991 CCGAGGGACTAATCAAAAAGACTC 59.129 45.833 0.00 0.00 41.55 3.36
405 406 5.337652 CCGAGGGACTAATCAAAAAGACTCT 60.338 44.000 0.00 0.00 41.55 3.24
406 407 5.808030 CGAGGGACTAATCAAAAAGACTCTC 59.192 44.000 0.00 0.00 41.55 3.20
407 408 6.350612 CGAGGGACTAATCAAAAAGACTCTCT 60.351 42.308 0.00 0.00 41.55 3.10
408 409 7.148052 CGAGGGACTAATCAAAAAGACTCTCTA 60.148 40.741 0.00 0.00 41.55 2.43
409 410 8.073467 AGGGACTAATCAAAAAGACTCTCTAG 57.927 38.462 0.00 0.00 36.02 2.43
410 411 7.676468 AGGGACTAATCAAAAAGACTCTCTAGT 59.324 37.037 0.00 0.00 36.02 2.57
411 412 8.968969 GGGACTAATCAAAAAGACTCTCTAGTA 58.031 37.037 0.00 0.00 35.56 1.82
428 429 9.106070 CTCTCTAGTAGAGTCTTTTTCTAGTCC 57.894 40.741 23.51 0.00 45.85 3.85
429 430 8.048514 TCTCTAGTAGAGTCTTTTTCTAGTCCC 58.951 40.741 23.51 0.00 42.83 4.46
430 431 7.931046 TCTAGTAGAGTCTTTTTCTAGTCCCT 58.069 38.462 0.00 0.00 33.84 4.20
431 432 6.844097 AGTAGAGTCTTTTTCTAGTCCCTG 57.156 41.667 0.00 0.00 0.00 4.45
432 433 6.316513 AGTAGAGTCTTTTTCTAGTCCCTGT 58.683 40.000 0.00 0.00 0.00 4.00
433 434 7.468496 AGTAGAGTCTTTTTCTAGTCCCTGTA 58.532 38.462 0.00 0.00 0.00 2.74
434 435 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
435 436 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
436 437 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
437 438 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
443 444 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
444 445 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
445 446 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
446 447 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
447 448 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
448 449 2.026169 CCCTGTAGAAAAAGTCCCTCCC 60.026 54.545 0.00 0.00 0.00 4.30
449 450 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
450 451 2.302157 CTGTAGAAAAAGTCCCTCCCGT 59.698 50.000 0.00 0.00 0.00 5.28
451 452 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
452 453 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
453 454 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
454 455 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
455 456 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
456 457 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
457 458 0.554305 AAGTCCCTCCCGTTTGGTTT 59.446 50.000 0.00 0.00 34.77 3.27
458 459 0.109913 AGTCCCTCCCGTTTGGTTTC 59.890 55.000 0.00 0.00 34.77 2.78
459 460 0.109913 GTCCCTCCCGTTTGGTTTCT 59.890 55.000 0.00 0.00 34.77 2.52
460 461 1.348696 GTCCCTCCCGTTTGGTTTCTA 59.651 52.381 0.00 0.00 34.77 2.10
461 462 2.056359 TCCCTCCCGTTTGGTTTCTAA 58.944 47.619 0.00 0.00 34.77 2.10
462 463 2.442502 TCCCTCCCGTTTGGTTTCTAAA 59.557 45.455 0.00 0.00 34.77 1.85
463 464 2.817844 CCCTCCCGTTTGGTTTCTAAAG 59.182 50.000 0.00 0.00 34.77 1.85
464 465 3.497227 CCCTCCCGTTTGGTTTCTAAAGA 60.497 47.826 0.00 0.00 34.77 2.52
465 466 3.501062 CCTCCCGTTTGGTTTCTAAAGAC 59.499 47.826 0.00 0.00 34.77 3.01
466 467 4.386711 CTCCCGTTTGGTTTCTAAAGACT 58.613 43.478 0.00 0.00 34.77 3.24
467 468 4.784177 TCCCGTTTGGTTTCTAAAGACTT 58.216 39.130 0.00 0.00 34.77 3.01
468 469 5.195185 TCCCGTTTGGTTTCTAAAGACTTT 58.805 37.500 5.62 5.62 34.77 2.66
469 470 5.653330 TCCCGTTTGGTTTCTAAAGACTTTT 59.347 36.000 5.61 0.00 34.77 2.27
470 471 6.153170 TCCCGTTTGGTTTCTAAAGACTTTTT 59.847 34.615 5.61 0.00 34.77 1.94
471 472 7.338957 TCCCGTTTGGTTTCTAAAGACTTTTTA 59.661 33.333 5.61 0.00 34.77 1.52
472 473 7.975058 CCCGTTTGGTTTCTAAAGACTTTTTAA 59.025 33.333 5.61 0.00 0.00 1.52
473 474 9.356433 CCGTTTGGTTTCTAAAGACTTTTTAAA 57.644 29.630 5.61 4.75 0.00 1.52
512 513 9.106070 TCTTTAAGACTAAAAAGTGACTGAACC 57.894 33.333 9.06 0.00 34.88 3.62
513 514 8.795842 TTTAAGACTAAAAAGTGACTGAACCA 57.204 30.769 0.00 0.00 0.00 3.67
514 515 8.795842 TTAAGACTAAAAAGTGACTGAACCAA 57.204 30.769 0.00 0.00 0.00 3.67
515 516 7.696992 AAGACTAAAAAGTGACTGAACCAAA 57.303 32.000 0.00 0.00 0.00 3.28
516 517 7.085052 AGACTAAAAAGTGACTGAACCAAAC 57.915 36.000 0.00 0.00 0.00 2.93
517 518 6.657541 AGACTAAAAAGTGACTGAACCAAACA 59.342 34.615 0.00 0.00 0.00 2.83
518 519 6.617879 ACTAAAAAGTGACTGAACCAAACAC 58.382 36.000 0.00 0.00 0.00 3.32
519 520 4.450082 AAAAGTGACTGAACCAAACACC 57.550 40.909 0.00 0.00 32.76 4.16
520 521 2.052782 AGTGACTGAACCAAACACCC 57.947 50.000 0.00 0.00 32.76 4.61
521 522 1.029681 GTGACTGAACCAAACACCCC 58.970 55.000 0.00 0.00 0.00 4.95
522 523 0.923358 TGACTGAACCAAACACCCCT 59.077 50.000 0.00 0.00 0.00 4.79
523 524 1.318576 GACTGAACCAAACACCCCTG 58.681 55.000 0.00 0.00 0.00 4.45
613 641 0.661020 AACTTTCTTTGCGTGGGACG 59.339 50.000 0.00 0.00 45.88 4.79
633 662 3.067106 CGCACTTGTCATTTACCAGTCT 58.933 45.455 0.00 0.00 31.90 3.24
655 687 3.520691 ATATGAGTAGCGAGGTACCCA 57.479 47.619 8.74 4.18 0.00 4.51
853 887 1.274703 ATCCCAGCCGTCTGTCCAAT 61.275 55.000 0.00 0.00 38.66 3.16
867 901 1.840635 GTCCAATGCTAACCCCTCTCT 59.159 52.381 0.00 0.00 0.00 3.10
954 988 2.704572 CACACAACCTCCATCTCTTCC 58.295 52.381 0.00 0.00 0.00 3.46
977 1020 0.460987 CTTCCGCAGAACCCTAGCTG 60.461 60.000 0.00 0.00 35.28 4.24
978 1021 1.192146 TTCCGCAGAACCCTAGCTGT 61.192 55.000 0.00 0.00 34.66 4.40
986 1029 1.348036 GAACCCTAGCTGTCCACAAGT 59.652 52.381 0.00 0.00 0.00 3.16
1433 1704 0.948678 TCACCTTGTTAAACTGCCGC 59.051 50.000 0.00 0.00 0.00 6.53
1454 1725 3.549423 GCGCAATGTAGGAGTACGACATA 60.549 47.826 0.30 0.00 33.48 2.29
1488 1760 8.537728 TTTGCAATATCTGAATTGGTTCCTAT 57.462 30.769 0.00 0.00 37.34 2.57
1585 1857 3.827898 GCGCGTGCTAGACCTCCT 61.828 66.667 15.02 0.00 38.39 3.69
1626 1904 2.422127 CTGTGCATCAACATCAGCATCA 59.578 45.455 0.00 0.00 39.43 3.07
1627 1905 2.422127 TGTGCATCAACATCAGCATCAG 59.578 45.455 0.00 0.00 39.43 2.90
1628 1906 1.404035 TGCATCAACATCAGCATCAGC 59.596 47.619 0.00 0.00 42.56 4.26
1629 1907 1.404035 GCATCAACATCAGCATCAGCA 59.596 47.619 0.00 0.00 45.49 4.41
1630 1908 2.034685 GCATCAACATCAGCATCAGCAT 59.965 45.455 0.00 0.00 45.49 3.79
1631 1909 3.853676 GCATCAACATCAGCATCAGCATC 60.854 47.826 0.00 0.00 45.49 3.91
2431 2709 5.924825 ACAATGACGTTCTGGTAAGTTACTC 59.075 40.000 12.65 4.14 0.00 2.59
2562 2841 5.211174 AGTATCGTTTATAACTCAGGCCC 57.789 43.478 0.00 0.00 0.00 5.80
2639 2918 4.628715 GCCAACTCTCTTATTCATTGGGGA 60.629 45.833 0.00 0.00 37.62 4.81
2700 2981 2.492088 ACAAATTTAGAGGGCGGCTTTC 59.508 45.455 9.56 7.44 0.00 2.62
2701 2982 2.755103 CAAATTTAGAGGGCGGCTTTCT 59.245 45.455 9.56 14.64 0.00 2.52
2751 3032 2.863132 TAAGCCGCCCAAAAGAACTA 57.137 45.000 0.00 0.00 0.00 2.24
2752 3033 1.244816 AAGCCGCCCAAAAGAACTAC 58.755 50.000 0.00 0.00 0.00 2.73
2753 3034 0.109723 AGCCGCCCAAAAGAACTACA 59.890 50.000 0.00 0.00 0.00 2.74
2787 3068 5.669477 AGATCTTTGAATCTGTGTAGGCTC 58.331 41.667 0.00 0.00 34.68 4.70
2894 3178 4.320608 TTTTCCAATGAACAGTTCTGGC 57.679 40.909 14.51 0.00 0.00 4.85
2983 3271 8.408601 GCACTGATCAATTATGATGTTTTAGGT 58.591 33.333 0.00 0.00 46.30 3.08
3179 3467 7.296628 TGGCCTTAATTTCATTGTTAAGTGT 57.703 32.000 3.32 0.00 36.59 3.55
3180 3468 7.375053 TGGCCTTAATTTCATTGTTAAGTGTC 58.625 34.615 3.32 0.00 36.59 3.67
3332 3620 6.423905 GGCTAGCAAGAATAATGATGTTCGTA 59.576 38.462 18.24 0.00 32.42 3.43
3347 3635 8.683550 TGATGTTCGTAGTGTCTTAATAACTG 57.316 34.615 0.00 0.00 0.00 3.16
3348 3636 7.758076 TGATGTTCGTAGTGTCTTAATAACTGG 59.242 37.037 0.00 0.00 0.00 4.00
3362 3650 8.475639 TCTTAATAACTGGTAACTGCTTAGAGG 58.524 37.037 0.00 0.00 39.52 3.69
3404 3692 3.702548 AGGGTCCAAAACTTTTAAACGCT 59.297 39.130 9.94 9.94 0.00 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.003718 GCCACGCCTTTAGGTCTGT 60.004 57.895 0.00 0.00 37.57 3.41
1 2 2.100631 CGCCACGCCTTTAGGTCTG 61.101 63.158 0.00 0.00 37.57 3.51
2 3 2.264794 CGCCACGCCTTTAGGTCT 59.735 61.111 0.00 0.00 37.57 3.85
3 4 2.818274 CCGCCACGCCTTTAGGTC 60.818 66.667 0.00 0.00 37.57 3.85
20 21 2.293399 CCGACAATAAATTAGGCTGGGC 59.707 50.000 0.00 0.00 0.00 5.36
21 22 3.815809 TCCGACAATAAATTAGGCTGGG 58.184 45.455 0.00 0.00 0.00 4.45
22 23 4.261197 GCTTCCGACAATAAATTAGGCTGG 60.261 45.833 0.00 0.00 0.00 4.85
23 24 4.576463 AGCTTCCGACAATAAATTAGGCTG 59.424 41.667 0.00 0.00 0.00 4.85
24 25 4.781934 AGCTTCCGACAATAAATTAGGCT 58.218 39.130 0.00 0.00 0.00 4.58
25 26 4.318831 CGAGCTTCCGACAATAAATTAGGC 60.319 45.833 0.00 0.00 0.00 3.93
26 27 4.211374 CCGAGCTTCCGACAATAAATTAGG 59.789 45.833 0.00 0.00 0.00 2.69
27 28 4.809426 ACCGAGCTTCCGACAATAAATTAG 59.191 41.667 0.00 0.00 0.00 1.73
28 29 4.761975 ACCGAGCTTCCGACAATAAATTA 58.238 39.130 0.00 0.00 0.00 1.40
29 30 3.606687 ACCGAGCTTCCGACAATAAATT 58.393 40.909 0.00 0.00 0.00 1.82
30 31 3.261981 ACCGAGCTTCCGACAATAAAT 57.738 42.857 0.00 0.00 0.00 1.40
31 32 2.754946 ACCGAGCTTCCGACAATAAA 57.245 45.000 0.00 0.00 0.00 1.40
32 33 2.754946 AACCGAGCTTCCGACAATAA 57.245 45.000 0.00 0.00 0.00 1.40
33 34 2.100252 CCTAACCGAGCTTCCGACAATA 59.900 50.000 0.00 0.00 0.00 1.90
34 35 1.134788 CCTAACCGAGCTTCCGACAAT 60.135 52.381 0.00 0.00 0.00 2.71
35 36 0.245539 CCTAACCGAGCTTCCGACAA 59.754 55.000 0.00 0.00 0.00 3.18
36 37 0.896940 ACCTAACCGAGCTTCCGACA 60.897 55.000 0.00 0.00 0.00 4.35
37 38 0.179142 GACCTAACCGAGCTTCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
38 39 1.651240 CGACCTAACCGAGCTTCCGA 61.651 60.000 0.00 0.00 0.00 4.55
39 40 1.226603 CGACCTAACCGAGCTTCCG 60.227 63.158 0.00 0.00 0.00 4.30
40 41 1.098050 TACGACCTAACCGAGCTTCC 58.902 55.000 0.00 0.00 0.00 3.46
41 42 2.927553 TTACGACCTAACCGAGCTTC 57.072 50.000 0.00 0.00 0.00 3.86
42 43 3.696051 TGTATTACGACCTAACCGAGCTT 59.304 43.478 0.00 0.00 0.00 3.74
43 44 3.282021 TGTATTACGACCTAACCGAGCT 58.718 45.455 0.00 0.00 0.00 4.09
44 45 3.313526 TCTGTATTACGACCTAACCGAGC 59.686 47.826 0.00 0.00 0.00 5.03
45 46 5.269313 GTTCTGTATTACGACCTAACCGAG 58.731 45.833 0.00 0.00 0.00 4.63
46 47 4.201812 CGTTCTGTATTACGACCTAACCGA 60.202 45.833 0.00 0.00 40.03 4.69
47 48 4.031028 CGTTCTGTATTACGACCTAACCG 58.969 47.826 0.00 0.00 40.03 4.44
48 49 5.235305 TCGTTCTGTATTACGACCTAACC 57.765 43.478 0.00 0.00 41.38 2.85
49 50 5.228843 GCTTCGTTCTGTATTACGACCTAAC 59.771 44.000 0.00 0.00 45.38 2.34
50 51 5.335127 GCTTCGTTCTGTATTACGACCTAA 58.665 41.667 0.00 0.00 45.38 2.69
51 52 4.494690 CGCTTCGTTCTGTATTACGACCTA 60.495 45.833 0.00 0.00 45.38 3.08
52 53 3.730061 CGCTTCGTTCTGTATTACGACCT 60.730 47.826 0.00 0.00 45.38 3.85
53 54 2.529090 CGCTTCGTTCTGTATTACGACC 59.471 50.000 0.00 0.00 45.38 4.79
54 55 3.236980 GTCGCTTCGTTCTGTATTACGAC 59.763 47.826 0.00 0.00 45.38 4.34
55 56 3.125829 AGTCGCTTCGTTCTGTATTACGA 59.874 43.478 0.00 0.00 44.20 3.43
56 57 3.237660 CAGTCGCTTCGTTCTGTATTACG 59.762 47.826 0.00 0.00 39.03 3.18
57 58 4.164294 ACAGTCGCTTCGTTCTGTATTAC 58.836 43.478 13.86 0.00 39.42 1.89
58 59 4.430137 ACAGTCGCTTCGTTCTGTATTA 57.570 40.909 13.86 0.00 39.42 0.98
59 60 3.299340 ACAGTCGCTTCGTTCTGTATT 57.701 42.857 13.86 0.00 39.42 1.89
60 61 3.727079 CGTACAGTCGCTTCGTTCTGTAT 60.727 47.826 19.52 6.50 41.82 2.29
61 62 2.411935 CGTACAGTCGCTTCGTTCTGTA 60.412 50.000 15.91 15.91 40.56 2.74
62 63 1.662309 CGTACAGTCGCTTCGTTCTGT 60.662 52.381 17.21 17.21 41.76 3.41
63 64 0.975544 CGTACAGTCGCTTCGTTCTG 59.024 55.000 0.00 10.43 36.62 3.02
64 65 0.590195 ACGTACAGTCGCTTCGTTCT 59.410 50.000 0.00 0.00 0.00 3.01
65 66 0.701303 CACGTACAGTCGCTTCGTTC 59.299 55.000 0.00 0.00 32.47 3.95
66 67 0.308684 TCACGTACAGTCGCTTCGTT 59.691 50.000 0.00 0.00 32.47 3.85
67 68 0.110328 CTCACGTACAGTCGCTTCGT 60.110 55.000 0.00 0.00 35.12 3.85
68 69 0.165295 TCTCACGTACAGTCGCTTCG 59.835 55.000 0.00 0.00 0.00 3.79
69 70 2.546195 ATCTCACGTACAGTCGCTTC 57.454 50.000 0.00 0.00 0.00 3.86
70 71 4.155462 TCTTAATCTCACGTACAGTCGCTT 59.845 41.667 0.00 0.00 0.00 4.68
71 72 3.688185 TCTTAATCTCACGTACAGTCGCT 59.312 43.478 0.00 0.00 0.00 4.93
72 73 4.012319 TCTTAATCTCACGTACAGTCGC 57.988 45.455 0.00 0.00 0.00 5.19
73 74 4.029704 GCTCTTAATCTCACGTACAGTCG 58.970 47.826 0.00 0.00 0.00 4.18
74 75 5.238006 AGCTCTTAATCTCACGTACAGTC 57.762 43.478 0.00 0.00 0.00 3.51
75 76 6.754702 TTAGCTCTTAATCTCACGTACAGT 57.245 37.500 0.00 0.00 0.00 3.55
76 77 7.845617 GATTAGCTCTTAATCTCACGTACAG 57.154 40.000 0.00 0.00 42.85 2.74
86 87 5.539048 TGGCCGTTAGATTAGCTCTTAATC 58.461 41.667 0.00 0.00 45.32 1.75
87 88 5.304614 TCTGGCCGTTAGATTAGCTCTTAAT 59.695 40.000 0.00 0.00 35.28 1.40
88 89 4.647853 TCTGGCCGTTAGATTAGCTCTTAA 59.352 41.667 0.00 0.00 35.28 1.85
89 90 4.212716 TCTGGCCGTTAGATTAGCTCTTA 58.787 43.478 0.00 0.00 35.28 2.10
90 91 3.031736 TCTGGCCGTTAGATTAGCTCTT 58.968 45.455 0.00 0.00 35.28 2.85
91 92 2.667470 TCTGGCCGTTAGATTAGCTCT 58.333 47.619 0.00 0.00 38.06 4.09
92 93 3.454371 TTCTGGCCGTTAGATTAGCTC 57.546 47.619 0.00 0.00 0.00 4.09
93 94 3.451178 TCTTTCTGGCCGTTAGATTAGCT 59.549 43.478 0.00 0.00 0.00 3.32
94 95 3.793559 TCTTTCTGGCCGTTAGATTAGC 58.206 45.455 0.00 0.00 0.00 3.09
95 96 5.848406 AGATCTTTCTGGCCGTTAGATTAG 58.152 41.667 0.00 0.00 0.00 1.73
96 97 5.871396 AGATCTTTCTGGCCGTTAGATTA 57.129 39.130 0.00 0.00 0.00 1.75
97 98 4.762289 AGATCTTTCTGGCCGTTAGATT 57.238 40.909 0.00 0.00 0.00 2.40
98 99 5.871396 TTAGATCTTTCTGGCCGTTAGAT 57.129 39.130 0.00 3.60 33.17 1.98
99 100 5.670792 TTTAGATCTTTCTGGCCGTTAGA 57.329 39.130 0.00 0.00 33.17 2.10
100 101 5.875359 ACTTTTAGATCTTTCTGGCCGTTAG 59.125 40.000 0.00 0.00 33.17 2.34
101 102 5.642063 CACTTTTAGATCTTTCTGGCCGTTA 59.358 40.000 0.00 0.00 33.17 3.18
102 103 4.455877 CACTTTTAGATCTTTCTGGCCGTT 59.544 41.667 0.00 0.00 33.17 4.44
103 104 4.003648 CACTTTTAGATCTTTCTGGCCGT 58.996 43.478 0.00 0.00 33.17 5.68
104 105 3.375299 CCACTTTTAGATCTTTCTGGCCG 59.625 47.826 0.00 0.00 33.17 6.13
105 106 4.156739 CACCACTTTTAGATCTTTCTGGCC 59.843 45.833 0.00 0.00 33.17 5.36
106 107 5.003804 TCACCACTTTTAGATCTTTCTGGC 58.996 41.667 0.00 0.00 33.17 4.85
107 108 6.036517 CGATCACCACTTTTAGATCTTTCTGG 59.963 42.308 0.00 1.94 35.81 3.86
108 109 6.036517 CCGATCACCACTTTTAGATCTTTCTG 59.963 42.308 0.00 0.00 35.81 3.02
109 110 6.070767 TCCGATCACCACTTTTAGATCTTTCT 60.071 38.462 0.00 0.00 35.81 2.52
110 111 6.036191 GTCCGATCACCACTTTTAGATCTTTC 59.964 42.308 0.00 0.00 35.81 2.62
111 112 5.875359 GTCCGATCACCACTTTTAGATCTTT 59.125 40.000 0.00 0.00 35.81 2.52
112 113 5.420409 GTCCGATCACCACTTTTAGATCTT 58.580 41.667 0.00 0.00 35.81 2.40
113 114 4.440250 CGTCCGATCACCACTTTTAGATCT 60.440 45.833 0.00 0.00 35.81 2.75
114 115 3.797256 CGTCCGATCACCACTTTTAGATC 59.203 47.826 0.00 0.00 34.88 2.75
115 116 3.430374 CCGTCCGATCACCACTTTTAGAT 60.430 47.826 0.00 0.00 0.00 1.98
116 117 2.094390 CCGTCCGATCACCACTTTTAGA 60.094 50.000 0.00 0.00 0.00 2.10
117 118 2.268298 CCGTCCGATCACCACTTTTAG 58.732 52.381 0.00 0.00 0.00 1.85
118 119 1.673626 GCCGTCCGATCACCACTTTTA 60.674 52.381 0.00 0.00 0.00 1.52
119 120 0.953960 GCCGTCCGATCACCACTTTT 60.954 55.000 0.00 0.00 0.00 2.27
120 121 1.375523 GCCGTCCGATCACCACTTT 60.376 57.895 0.00 0.00 0.00 2.66
121 122 2.264794 GCCGTCCGATCACCACTT 59.735 61.111 0.00 0.00 0.00 3.16
122 123 2.680352 AGCCGTCCGATCACCACT 60.680 61.111 0.00 0.00 0.00 4.00
123 124 2.509336 CAGCCGTCCGATCACCAC 60.509 66.667 0.00 0.00 0.00 4.16
124 125 4.451150 GCAGCCGTCCGATCACCA 62.451 66.667 0.00 0.00 0.00 4.17
125 126 2.292794 TTAGCAGCCGTCCGATCACC 62.293 60.000 0.00 0.00 0.00 4.02
126 127 1.141019 TTAGCAGCCGTCCGATCAC 59.859 57.895 0.00 0.00 0.00 3.06
127 128 1.141019 GTTAGCAGCCGTCCGATCA 59.859 57.895 0.00 0.00 0.00 2.92
128 129 1.944676 CGTTAGCAGCCGTCCGATC 60.945 63.158 0.00 0.00 0.00 3.69
129 130 2.104331 CGTTAGCAGCCGTCCGAT 59.896 61.111 0.00 0.00 0.00 4.18
130 131 4.789075 GCGTTAGCAGCCGTCCGA 62.789 66.667 0.00 0.00 44.35 4.55
140 141 3.127533 CAGGCCACCAGCGTTAGC 61.128 66.667 5.01 0.00 45.17 3.09
141 142 1.448540 CTCAGGCCACCAGCGTTAG 60.449 63.158 5.01 0.00 45.17 2.34
142 143 1.888436 CTCTCAGGCCACCAGCGTTA 61.888 60.000 5.01 0.00 45.17 3.18
143 144 3.241530 TCTCAGGCCACCAGCGTT 61.242 61.111 5.01 0.00 45.17 4.84
144 145 3.699894 CTCTCAGGCCACCAGCGT 61.700 66.667 5.01 0.00 45.17 5.07
145 146 4.463879 CCTCTCAGGCCACCAGCG 62.464 72.222 5.01 0.00 45.17 5.18
146 147 4.106925 CCCTCTCAGGCCACCAGC 62.107 72.222 5.01 0.00 42.60 4.85
147 148 1.306141 TACCCTCTCAGGCCACCAG 60.306 63.158 5.01 0.00 32.73 4.00
148 149 1.306141 CTACCCTCTCAGGCCACCA 60.306 63.158 5.01 0.00 32.73 4.17
149 150 2.066999 CCTACCCTCTCAGGCCACC 61.067 68.421 5.01 0.00 32.73 4.61
150 151 0.617820 TTCCTACCCTCTCAGGCCAC 60.618 60.000 5.01 0.00 32.73 5.01
151 152 0.118346 TTTCCTACCCTCTCAGGCCA 59.882 55.000 5.01 0.00 32.73 5.36
152 153 1.286248 TTTTCCTACCCTCTCAGGCC 58.714 55.000 0.00 0.00 32.73 5.19
153 154 3.282885 CAATTTTCCTACCCTCTCAGGC 58.717 50.000 0.00 0.00 32.73 4.85
154 155 3.054065 AGCAATTTTCCTACCCTCTCAGG 60.054 47.826 0.00 0.00 34.30 3.86
155 156 4.195416 GAGCAATTTTCCTACCCTCTCAG 58.805 47.826 0.00 0.00 0.00 3.35
156 157 3.587061 TGAGCAATTTTCCTACCCTCTCA 59.413 43.478 0.00 0.00 0.00 3.27
157 158 4.195416 CTGAGCAATTTTCCTACCCTCTC 58.805 47.826 0.00 0.00 0.00 3.20
158 159 3.589288 ACTGAGCAATTTTCCTACCCTCT 59.411 43.478 0.00 0.00 0.00 3.69
159 160 3.956744 ACTGAGCAATTTTCCTACCCTC 58.043 45.455 0.00 0.00 0.00 4.30
160 161 4.388577 AACTGAGCAATTTTCCTACCCT 57.611 40.909 0.00 0.00 0.00 4.34
161 162 7.012421 CACTATAACTGAGCAATTTTCCTACCC 59.988 40.741 0.00 0.00 0.00 3.69
162 163 7.553044 ACACTATAACTGAGCAATTTTCCTACC 59.447 37.037 0.00 0.00 0.00 3.18
163 164 8.494016 ACACTATAACTGAGCAATTTTCCTAC 57.506 34.615 0.00 0.00 0.00 3.18
164 165 9.595823 GTACACTATAACTGAGCAATTTTCCTA 57.404 33.333 0.00 0.00 0.00 2.94
165 166 8.322091 AGTACACTATAACTGAGCAATTTTCCT 58.678 33.333 0.00 0.00 0.00 3.36
166 167 8.494016 AGTACACTATAACTGAGCAATTTTCC 57.506 34.615 0.00 0.00 0.00 3.13
189 190 9.316730 CAGCCACAATTTGCATATAATTTAAGT 57.683 29.630 0.00 0.00 0.00 2.24
190 191 9.316730 ACAGCCACAATTTGCATATAATTTAAG 57.683 29.630 0.00 0.00 0.00 1.85
191 192 9.664332 AACAGCCACAATTTGCATATAATTTAA 57.336 25.926 0.00 0.00 0.00 1.52
192 193 9.096160 CAACAGCCACAATTTGCATATAATTTA 57.904 29.630 0.00 0.00 0.00 1.40
193 194 7.066043 CCAACAGCCACAATTTGCATATAATTT 59.934 33.333 0.00 0.00 0.00 1.82
194 195 6.539464 CCAACAGCCACAATTTGCATATAATT 59.461 34.615 0.00 0.00 0.00 1.40
195 196 6.050432 CCAACAGCCACAATTTGCATATAAT 58.950 36.000 0.00 0.00 0.00 1.28
196 197 5.417811 CCAACAGCCACAATTTGCATATAA 58.582 37.500 0.00 0.00 0.00 0.98
197 198 4.680172 GCCAACAGCCACAATTTGCATATA 60.680 41.667 0.00 0.00 34.35 0.86
198 199 3.864243 CCAACAGCCACAATTTGCATAT 58.136 40.909 0.00 0.00 0.00 1.78
199 200 2.612471 GCCAACAGCCACAATTTGCATA 60.612 45.455 0.00 0.00 34.35 3.14
200 201 1.878948 GCCAACAGCCACAATTTGCAT 60.879 47.619 0.00 0.00 34.35 3.96
201 202 0.532417 GCCAACAGCCACAATTTGCA 60.532 50.000 0.00 0.00 34.35 4.08
202 203 2.237416 GCCAACAGCCACAATTTGC 58.763 52.632 0.00 0.00 34.35 3.68
212 213 0.454600 CACATCATCAGGCCAACAGC 59.545 55.000 5.01 0.00 42.60 4.40
213 214 1.100510 CCACATCATCAGGCCAACAG 58.899 55.000 5.01 0.00 0.00 3.16
214 215 0.405198 ACCACATCATCAGGCCAACA 59.595 50.000 5.01 0.00 0.00 3.33
215 216 1.203052 CAACCACATCATCAGGCCAAC 59.797 52.381 5.01 0.00 0.00 3.77
216 217 1.548081 CAACCACATCATCAGGCCAA 58.452 50.000 5.01 0.00 0.00 4.52
217 218 0.966875 GCAACCACATCATCAGGCCA 60.967 55.000 5.01 0.00 0.00 5.36
218 219 1.811860 GCAACCACATCATCAGGCC 59.188 57.895 0.00 0.00 0.00 5.19
219 220 1.430632 CGCAACCACATCATCAGGC 59.569 57.895 0.00 0.00 0.00 4.85
220 221 1.028330 AGCGCAACCACATCATCAGG 61.028 55.000 11.47 0.00 0.00 3.86
221 222 1.655484 TAGCGCAACCACATCATCAG 58.345 50.000 11.47 0.00 0.00 2.90
222 223 1.941975 CATAGCGCAACCACATCATCA 59.058 47.619 11.47 0.00 0.00 3.07
223 224 1.942657 ACATAGCGCAACCACATCATC 59.057 47.619 11.47 0.00 0.00 2.92
224 225 1.672363 CACATAGCGCAACCACATCAT 59.328 47.619 11.47 0.00 0.00 2.45
225 226 1.085893 CACATAGCGCAACCACATCA 58.914 50.000 11.47 0.00 0.00 3.07
226 227 0.248215 GCACATAGCGCAACCACATC 60.248 55.000 11.47 0.00 0.00 3.06
227 228 1.802636 GCACATAGCGCAACCACAT 59.197 52.632 11.47 0.00 0.00 3.21
228 229 3.262936 GCACATAGCGCAACCACA 58.737 55.556 11.47 0.00 0.00 4.17
237 238 1.135315 CCAGCAACACGCACATAGC 59.865 57.895 0.00 0.00 46.13 2.97
238 239 0.443869 GACCAGCAACACGCACATAG 59.556 55.000 0.00 0.00 46.13 2.23
239 240 0.034756 AGACCAGCAACACGCACATA 59.965 50.000 0.00 0.00 46.13 2.29
240 241 1.227943 AGACCAGCAACACGCACAT 60.228 52.632 0.00 0.00 46.13 3.21
241 242 2.179547 CAGACCAGCAACACGCACA 61.180 57.895 0.00 0.00 46.13 4.57
242 243 1.714899 AACAGACCAGCAACACGCAC 61.715 55.000 0.00 0.00 46.13 5.34
243 244 1.029408 AAACAGACCAGCAACACGCA 61.029 50.000 0.00 0.00 46.13 5.24
244 245 0.592247 CAAACAGACCAGCAACACGC 60.592 55.000 0.00 0.00 42.91 5.34
245 246 0.029300 CCAAACAGACCAGCAACACG 59.971 55.000 0.00 0.00 0.00 4.49
246 247 1.102978 ACCAAACAGACCAGCAACAC 58.897 50.000 0.00 0.00 0.00 3.32
247 248 2.092646 AGTACCAAACAGACCAGCAACA 60.093 45.455 0.00 0.00 0.00 3.33
248 249 2.572290 AGTACCAAACAGACCAGCAAC 58.428 47.619 0.00 0.00 0.00 4.17
249 250 3.290948 AAGTACCAAACAGACCAGCAA 57.709 42.857 0.00 0.00 0.00 3.91
250 251 2.948979 CAAAGTACCAAACAGACCAGCA 59.051 45.455 0.00 0.00 0.00 4.41
251 252 2.287608 GCAAAGTACCAAACAGACCAGC 60.288 50.000 0.00 0.00 0.00 4.85
252 253 2.293399 GGCAAAGTACCAAACAGACCAG 59.707 50.000 0.00 0.00 0.00 4.00
253 254 2.303175 GGCAAAGTACCAAACAGACCA 58.697 47.619 0.00 0.00 0.00 4.02
254 255 2.303175 TGGCAAAGTACCAAACAGACC 58.697 47.619 0.00 0.00 33.12 3.85
255 256 5.393027 CCATATGGCAAAGTACCAAACAGAC 60.393 44.000 9.29 0.00 41.49 3.51
256 257 4.704540 CCATATGGCAAAGTACCAAACAGA 59.295 41.667 9.29 0.00 41.49 3.41
257 258 4.462483 ACCATATGGCAAAGTACCAAACAG 59.538 41.667 22.18 0.00 41.49 3.16
258 259 4.411927 ACCATATGGCAAAGTACCAAACA 58.588 39.130 22.18 0.00 41.49 2.83
259 260 5.400066 AACCATATGGCAAAGTACCAAAC 57.600 39.130 22.18 0.00 41.49 2.93
260 261 6.426646 AAAACCATATGGCAAAGTACCAAA 57.573 33.333 22.18 0.00 41.49 3.28
261 262 7.726033 ATAAAACCATATGGCAAAGTACCAA 57.274 32.000 22.18 0.00 41.49 3.67
262 263 7.726033 AATAAAACCATATGGCAAAGTACCA 57.274 32.000 22.18 0.00 42.61 3.25
310 311 9.804758 TTCGAGAAACAGCCTTTTTATTAAAAA 57.195 25.926 12.48 12.48 37.99 1.94
311 312 9.458374 CTTCGAGAAACAGCCTTTTTATTAAAA 57.542 29.630 0.00 0.00 0.00 1.52
312 313 8.626526 ACTTCGAGAAACAGCCTTTTTATTAAA 58.373 29.630 0.00 0.00 0.00 1.52
313 314 8.161699 ACTTCGAGAAACAGCCTTTTTATTAA 57.838 30.769 0.00 0.00 0.00 1.40
314 315 7.660208 AGACTTCGAGAAACAGCCTTTTTATTA 59.340 33.333 0.00 0.00 0.00 0.98
315 316 6.486993 AGACTTCGAGAAACAGCCTTTTTATT 59.513 34.615 0.00 0.00 0.00 1.40
316 317 5.998363 AGACTTCGAGAAACAGCCTTTTTAT 59.002 36.000 0.00 0.00 0.00 1.40
317 318 5.365619 AGACTTCGAGAAACAGCCTTTTTA 58.634 37.500 0.00 0.00 0.00 1.52
318 319 4.200092 AGACTTCGAGAAACAGCCTTTTT 58.800 39.130 0.00 0.00 0.00 1.94
319 320 3.809905 AGACTTCGAGAAACAGCCTTTT 58.190 40.909 0.00 0.00 0.00 2.27
320 321 3.477210 AGACTTCGAGAAACAGCCTTT 57.523 42.857 0.00 0.00 0.00 3.11
321 322 3.056465 CCTAGACTTCGAGAAACAGCCTT 60.056 47.826 0.00 0.00 0.00 4.35
322 323 2.494073 CCTAGACTTCGAGAAACAGCCT 59.506 50.000 0.00 0.00 0.00 4.58
323 324 2.417515 CCCTAGACTTCGAGAAACAGCC 60.418 54.545 0.00 0.00 0.00 4.85
324 325 2.417515 CCCCTAGACTTCGAGAAACAGC 60.418 54.545 0.00 0.00 0.00 4.40
325 326 2.166664 CCCCCTAGACTTCGAGAAACAG 59.833 54.545 0.00 0.00 0.00 3.16
326 327 2.176889 CCCCCTAGACTTCGAGAAACA 58.823 52.381 0.00 0.00 0.00 2.83
327 328 2.094130 CACCCCCTAGACTTCGAGAAAC 60.094 54.545 0.00 0.00 0.00 2.78
328 329 2.176889 CACCCCCTAGACTTCGAGAAA 58.823 52.381 0.00 0.00 0.00 2.52
329 330 1.076677 ACACCCCCTAGACTTCGAGAA 59.923 52.381 0.00 0.00 0.00 2.87
330 331 0.702902 ACACCCCCTAGACTTCGAGA 59.297 55.000 0.00 0.00 0.00 4.04
331 332 1.558233 AACACCCCCTAGACTTCGAG 58.442 55.000 0.00 0.00 0.00 4.04
332 333 1.621814 CAAACACCCCCTAGACTTCGA 59.378 52.381 0.00 0.00 0.00 3.71
333 334 1.338769 CCAAACACCCCCTAGACTTCG 60.339 57.143 0.00 0.00 0.00 3.79
334 335 1.703513 ACCAAACACCCCCTAGACTTC 59.296 52.381 0.00 0.00 0.00 3.01
335 336 1.829138 ACCAAACACCCCCTAGACTT 58.171 50.000 0.00 0.00 0.00 3.01
336 337 1.703513 GAACCAAACACCCCCTAGACT 59.296 52.381 0.00 0.00 0.00 3.24
337 338 1.422402 TGAACCAAACACCCCCTAGAC 59.578 52.381 0.00 0.00 0.00 2.59
338 339 1.702957 CTGAACCAAACACCCCCTAGA 59.297 52.381 0.00 0.00 0.00 2.43
339 340 1.702957 TCTGAACCAAACACCCCCTAG 59.297 52.381 0.00 0.00 0.00 3.02
340 341 1.822425 TCTGAACCAAACACCCCCTA 58.178 50.000 0.00 0.00 0.00 3.53
341 342 0.930726 TTCTGAACCAAACACCCCCT 59.069 50.000 0.00 0.00 0.00 4.79
342 343 1.328279 CTTCTGAACCAAACACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
343 344 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
344 345 2.650322 TGACTTCTGAACCAAACACCC 58.350 47.619 0.00 0.00 0.00 4.61
345 346 4.455877 CCTATGACTTCTGAACCAAACACC 59.544 45.833 0.00 0.00 0.00 4.16
346 347 5.179555 GTCCTATGACTTCTGAACCAAACAC 59.820 44.000 0.00 0.00 38.53 3.32
347 348 5.305585 GTCCTATGACTTCTGAACCAAACA 58.694 41.667 0.00 0.00 38.53 2.83
348 349 5.864628 GTCCTATGACTTCTGAACCAAAC 57.135 43.478 0.00 0.00 38.53 2.93
380 381 4.530946 AGTCTTTTTGATTAGTCCCTCGGA 59.469 41.667 0.00 0.00 0.00 4.55
381 382 4.833390 AGTCTTTTTGATTAGTCCCTCGG 58.167 43.478 0.00 0.00 0.00 4.63
382 383 5.725362 AGAGTCTTTTTGATTAGTCCCTCG 58.275 41.667 0.00 0.00 0.00 4.63
383 384 6.941857 AGAGAGTCTTTTTGATTAGTCCCTC 58.058 40.000 0.00 0.00 0.00 4.30
384 385 6.943899 AGAGAGTCTTTTTGATTAGTCCCT 57.056 37.500 0.00 0.00 0.00 4.20
385 386 7.842982 ACTAGAGAGTCTTTTTGATTAGTCCC 58.157 38.462 0.00 0.00 0.00 4.46
403 404 8.048514 GGGACTAGAAAAAGACTCTACTAGAGA 58.951 40.741 18.41 0.00 45.07 3.10
404 405 8.050930 AGGGACTAGAAAAAGACTCTACTAGAG 58.949 40.741 11.06 11.06 42.94 2.43
405 406 7.830201 CAGGGACTAGAAAAAGACTCTACTAGA 59.170 40.741 0.00 0.00 36.02 2.43
406 407 7.612633 ACAGGGACTAGAAAAAGACTCTACTAG 59.387 40.741 0.00 0.00 36.02 2.57
407 408 7.468496 ACAGGGACTAGAAAAAGACTCTACTA 58.532 38.462 0.00 0.00 36.02 1.82
408 409 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
409 410 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
410 411 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
411 412 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
412 413 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
413 414 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
414 415 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
418 419 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
419 420 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
420 421 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
421 422 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
422 423 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
423 424 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
424 425 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
425 426 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
426 427 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
427 428 2.026169 GGGAGGGACTTTTTCTACAGGG 60.026 54.545 0.00 0.00 41.55 4.45
428 429 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
429 430 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
430 431 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
431 432 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
432 433 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
433 434 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
434 435 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
435 436 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
436 437 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
437 438 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
438 439 0.554305 AAACCAAACGGGAGGGACTT 59.446 50.000 0.00 0.00 41.55 3.01
440 441 0.109913 AGAAACCAAACGGGAGGGAC 59.890 55.000 0.00 0.00 41.15 4.46
441 442 1.732117 TAGAAACCAAACGGGAGGGA 58.268 50.000 0.00 0.00 41.15 4.20
442 443 2.572209 TTAGAAACCAAACGGGAGGG 57.428 50.000 0.00 0.00 41.15 4.30
443 444 3.501062 GTCTTTAGAAACCAAACGGGAGG 59.499 47.826 0.00 0.00 41.15 4.30
444 445 4.386711 AGTCTTTAGAAACCAAACGGGAG 58.613 43.478 0.00 0.00 41.15 4.30
445 446 4.426736 AGTCTTTAGAAACCAAACGGGA 57.573 40.909 0.00 0.00 41.15 5.14
446 447 5.509716 AAAGTCTTTAGAAACCAAACGGG 57.490 39.130 0.00 0.00 44.81 5.28
447 448 8.914328 TTAAAAAGTCTTTAGAAACCAAACGG 57.086 30.769 0.00 0.00 0.00 4.44
486 487 9.106070 GGTTCAGTCACTTTTTAGTCTTAAAGA 57.894 33.333 11.86 0.00 35.75 2.52
487 488 8.889717 TGGTTCAGTCACTTTTTAGTCTTAAAG 58.110 33.333 0.00 0.00 37.38 1.85
488 489 8.795842 TGGTTCAGTCACTTTTTAGTCTTAAA 57.204 30.769 0.00 0.00 0.00 1.52
489 490 8.795842 TTGGTTCAGTCACTTTTTAGTCTTAA 57.204 30.769 0.00 0.00 0.00 1.85
490 491 8.671028 GTTTGGTTCAGTCACTTTTTAGTCTTA 58.329 33.333 0.00 0.00 0.00 2.10
491 492 7.175990 TGTTTGGTTCAGTCACTTTTTAGTCTT 59.824 33.333 0.00 0.00 0.00 3.01
492 493 6.657541 TGTTTGGTTCAGTCACTTTTTAGTCT 59.342 34.615 0.00 0.00 0.00 3.24
493 494 6.745907 GTGTTTGGTTCAGTCACTTTTTAGTC 59.254 38.462 0.00 0.00 0.00 2.59
494 495 6.349860 GGTGTTTGGTTCAGTCACTTTTTAGT 60.350 38.462 0.00 0.00 0.00 2.24
495 496 6.033966 GGTGTTTGGTTCAGTCACTTTTTAG 58.966 40.000 0.00 0.00 0.00 1.85
496 497 5.105675 GGGTGTTTGGTTCAGTCACTTTTTA 60.106 40.000 0.00 0.00 0.00 1.52
497 498 4.322424 GGGTGTTTGGTTCAGTCACTTTTT 60.322 41.667 0.00 0.00 0.00 1.94
498 499 3.194755 GGGTGTTTGGTTCAGTCACTTTT 59.805 43.478 0.00 0.00 0.00 2.27
499 500 2.758423 GGGTGTTTGGTTCAGTCACTTT 59.242 45.455 0.00 0.00 0.00 2.66
500 501 2.375146 GGGTGTTTGGTTCAGTCACTT 58.625 47.619 0.00 0.00 0.00 3.16
501 502 1.409661 GGGGTGTTTGGTTCAGTCACT 60.410 52.381 0.00 0.00 0.00 3.41
502 503 1.029681 GGGGTGTTTGGTTCAGTCAC 58.970 55.000 0.00 0.00 0.00 3.67
503 504 0.923358 AGGGGTGTTTGGTTCAGTCA 59.077 50.000 0.00 0.00 0.00 3.41
504 505 1.318576 CAGGGGTGTTTGGTTCAGTC 58.681 55.000 0.00 0.00 0.00 3.51
505 506 0.106217 CCAGGGGTGTTTGGTTCAGT 60.106 55.000 0.00 0.00 0.00 3.41
506 507 0.184933 TCCAGGGGTGTTTGGTTCAG 59.815 55.000 0.00 0.00 35.89 3.02
507 508 0.106419 GTCCAGGGGTGTTTGGTTCA 60.106 55.000 0.00 0.00 35.89 3.18
508 509 0.185175 AGTCCAGGGGTGTTTGGTTC 59.815 55.000 0.00 0.00 35.89 3.62
509 510 0.185175 GAGTCCAGGGGTGTTTGGTT 59.815 55.000 0.00 0.00 35.89 3.67
510 511 0.697854 AGAGTCCAGGGGTGTTTGGT 60.698 55.000 0.00 0.00 35.89 3.67
511 512 0.478507 AAGAGTCCAGGGGTGTTTGG 59.521 55.000 0.00 0.00 35.74 3.28
512 513 2.158608 AGAAAGAGTCCAGGGGTGTTTG 60.159 50.000 0.00 0.00 0.00 2.93
513 514 2.136026 AGAAAGAGTCCAGGGGTGTTT 58.864 47.619 0.00 0.00 0.00 2.83
514 515 1.821088 AGAAAGAGTCCAGGGGTGTT 58.179 50.000 0.00 0.00 0.00 3.32
515 516 1.700186 GAAGAAAGAGTCCAGGGGTGT 59.300 52.381 0.00 0.00 0.00 4.16
516 517 1.003696 GGAAGAAAGAGTCCAGGGGTG 59.996 57.143 0.00 0.00 33.79 4.61
517 518 1.363246 GGAAGAAAGAGTCCAGGGGT 58.637 55.000 0.00 0.00 33.79 4.95
518 519 0.250513 CGGAAGAAAGAGTCCAGGGG 59.749 60.000 0.00 0.00 33.10 4.79
519 520 0.250513 CCGGAAGAAAGAGTCCAGGG 59.749 60.000 0.00 0.00 33.10 4.45
520 521 0.250513 CCCGGAAGAAAGAGTCCAGG 59.749 60.000 0.73 0.00 33.10 4.45
521 522 0.391793 GCCCGGAAGAAAGAGTCCAG 60.392 60.000 0.73 0.00 33.10 3.86
522 523 1.677552 GCCCGGAAGAAAGAGTCCA 59.322 57.895 0.73 0.00 33.10 4.02
523 524 1.448013 CGCCCGGAAGAAAGAGTCC 60.448 63.158 0.73 0.00 0.00 3.85
613 641 6.743575 ATTAGACTGGTAAATGACAAGTGC 57.256 37.500 0.00 0.00 42.91 4.40
686 720 2.162338 TTGACTAGGGCGTTCGTGGG 62.162 60.000 0.00 0.00 0.00 4.61
853 887 0.040646 TTCCGAGAGAGGGGTTAGCA 59.959 55.000 0.00 0.00 0.00 3.49
867 901 0.672401 CGCTGGGTTTTAGCTTCCGA 60.672 55.000 0.00 0.00 39.00 4.55
954 988 4.426313 GGGTTCTGCGGAAGGGGG 62.426 72.222 8.61 0.00 31.46 5.40
960 994 1.605058 GACAGCTAGGGTTCTGCGGA 61.605 60.000 0.00 0.00 33.80 5.54
977 1020 1.666311 CCGACGAAGAGACTTGTGGAC 60.666 57.143 0.00 0.00 0.00 4.02
978 1021 0.596577 CCGACGAAGAGACTTGTGGA 59.403 55.000 0.00 0.00 0.00 4.02
1101 1347 2.668212 CCGAAGCGGGCAAAGTGA 60.668 61.111 0.00 0.00 44.15 3.41
1433 1704 2.554806 TGTCGTACTCCTACATTGCG 57.445 50.000 0.00 0.00 0.00 4.85
1461 1732 7.678837 AGGAACCAATTCAGATATTGCAAAAA 58.321 30.769 1.71 0.00 36.46 1.94
1462 1733 7.243604 AGGAACCAATTCAGATATTGCAAAA 57.756 32.000 1.71 0.00 36.46 2.44
1463 1734 6.855763 AGGAACCAATTCAGATATTGCAAA 57.144 33.333 1.71 0.00 36.46 3.68
1464 1735 9.288576 CTATAGGAACCAATTCAGATATTGCAA 57.711 33.333 0.00 0.00 36.46 4.08
1545 1817 0.865769 CTTAACGTCCACCTGCACAC 59.134 55.000 0.00 0.00 0.00 3.82
1546 1818 0.753867 TCTTAACGTCCACCTGCACA 59.246 50.000 0.00 0.00 0.00 4.57
1585 1857 3.171828 TTGCTCGCCCAAGTTCCGA 62.172 57.895 0.00 0.00 0.00 4.55
1615 1887 1.309950 GCTGATGCTGATGCTGATGT 58.690 50.000 0.00 0.00 40.48 3.06
1627 1905 1.001641 ACCCTGTTCCAGCTGATGC 60.002 57.895 17.39 4.82 40.05 3.91
1628 1906 0.393537 GGACCCTGTTCCAGCTGATG 60.394 60.000 17.39 0.00 35.49 3.07
1629 1907 0.842030 TGGACCCTGTTCCAGCTGAT 60.842 55.000 17.39 0.00 41.00 2.90
1630 1908 1.461268 TGGACCCTGTTCCAGCTGA 60.461 57.895 17.39 0.00 41.00 4.26
1631 1909 3.160585 TGGACCCTGTTCCAGCTG 58.839 61.111 6.78 6.78 41.00 4.24
1648 1926 0.393077 CGTCTTGGTGACCCTGAACT 59.607 55.000 0.00 0.00 42.49 3.01
2281 2559 1.623811 ACGCCATACTGAACAGAAGGT 59.376 47.619 8.87 0.00 0.00 3.50
2431 2709 5.488341 ACCAGGCTGGCTAATAATAATACG 58.512 41.667 33.04 4.07 42.67 3.06
2556 2834 2.650778 GCCAAAAGAACGGGCCTG 59.349 61.111 11.02 11.02 41.90 4.85
2700 2981 3.679389 TGCCTCTCTCCAGCTTAAAAAG 58.321 45.455 0.00 0.00 0.00 2.27
2701 2982 3.788227 TGCCTCTCTCCAGCTTAAAAA 57.212 42.857 0.00 0.00 0.00 1.94
2752 3033 8.441608 CAGATTCAAAGATCTCACACTAAAGTG 58.558 37.037 8.56 8.56 41.65 3.16
2753 3034 8.153550 ACAGATTCAAAGATCTCACACTAAAGT 58.846 33.333 0.00 0.00 34.20 2.66
2938 3226 5.005971 CAGTGCAGGTTTTTCAAACATTCAG 59.994 40.000 0.00 0.00 0.00 3.02
3166 3454 5.071788 AGAGAAGGTGGACACTTAACAATGA 59.928 40.000 2.13 0.00 0.00 2.57
3179 3467 2.972713 AGTAACAGCAAGAGAAGGTGGA 59.027 45.455 0.00 0.00 38.72 4.02
3180 3468 3.409026 AGTAACAGCAAGAGAAGGTGG 57.591 47.619 0.00 0.00 38.72 4.61
3332 3620 7.005709 AGCAGTTACCAGTTATTAAGACACT 57.994 36.000 0.00 0.00 0.00 3.55
3347 3635 3.707102 AGATCACCCTCTAAGCAGTTACC 59.293 47.826 0.00 0.00 0.00 2.85
3348 3636 5.221283 GGTAGATCACCCTCTAAGCAGTTAC 60.221 48.000 0.00 0.00 42.07 2.50
3378 3666 6.534436 GCGTTTAAAAGTTTTGGACCCTTTTA 59.466 34.615 11.18 8.51 38.80 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.