Multiple sequence alignment - TraesCS2D01G256300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G256300 chr2D 100.000 2385 0 0 1 2385 310270604 310272988 0.000000e+00 4405.0
1 TraesCS2D01G256300 chr2D 94.250 800 43 3 1588 2385 98201535 98200737 0.000000e+00 1219.0
2 TraesCS2D01G256300 chr2D 93.867 799 45 4 1589 2385 318243388 318242592 0.000000e+00 1201.0
3 TraesCS2D01G256300 chr1B 86.398 1588 201 5 1 1585 369517131 369515556 0.000000e+00 1722.0
4 TraesCS2D01G256300 chr5B 85.141 1595 228 8 1 1591 126290837 126292426 0.000000e+00 1624.0
5 TraesCS2D01G256300 chr5D 94.118 799 43 4 1588 2384 338642087 338641291 0.000000e+00 1212.0
6 TraesCS2D01G256300 chr5D 94.088 795 46 1 1592 2385 126147939 126147145 0.000000e+00 1206.0
7 TraesCS2D01G256300 chr5D 75.566 221 41 11 479 693 298445404 298445191 1.950000e-16 97.1
8 TraesCS2D01G256300 chr4D 94.007 801 43 5 1587 2385 52782598 52783395 0.000000e+00 1208.0
9 TraesCS2D01G256300 chr4D 94.088 795 45 2 1593 2385 133162910 133162116 0.000000e+00 1206.0
10 TraesCS2D01G256300 chr6D 93.970 796 42 6 1591 2385 192236434 192235644 0.000000e+00 1199.0
11 TraesCS2D01G256300 chr7D 93.742 799 47 3 1589 2385 334175658 334174861 0.000000e+00 1195.0
12 TraesCS2D01G256300 chr7D 93.641 802 48 3 1585 2385 376381812 376382611 0.000000e+00 1195.0
13 TraesCS2D01G256300 chr7A 79.808 936 187 2 657 1591 232524090 232525024 0.000000e+00 680.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G256300 chr2D 310270604 310272988 2384 False 4405 4405 100.000 1 2385 1 chr2D.!!$F1 2384
1 TraesCS2D01G256300 chr2D 98200737 98201535 798 True 1219 1219 94.250 1588 2385 1 chr2D.!!$R1 797
2 TraesCS2D01G256300 chr2D 318242592 318243388 796 True 1201 1201 93.867 1589 2385 1 chr2D.!!$R2 796
3 TraesCS2D01G256300 chr1B 369515556 369517131 1575 True 1722 1722 86.398 1 1585 1 chr1B.!!$R1 1584
4 TraesCS2D01G256300 chr5B 126290837 126292426 1589 False 1624 1624 85.141 1 1591 1 chr5B.!!$F1 1590
5 TraesCS2D01G256300 chr5D 338641291 338642087 796 True 1212 1212 94.118 1588 2384 1 chr5D.!!$R3 796
6 TraesCS2D01G256300 chr5D 126147145 126147939 794 True 1206 1206 94.088 1592 2385 1 chr5D.!!$R1 793
7 TraesCS2D01G256300 chr4D 52782598 52783395 797 False 1208 1208 94.007 1587 2385 1 chr4D.!!$F1 798
8 TraesCS2D01G256300 chr4D 133162116 133162910 794 True 1206 1206 94.088 1593 2385 1 chr4D.!!$R1 792
9 TraesCS2D01G256300 chr6D 192235644 192236434 790 True 1199 1199 93.970 1591 2385 1 chr6D.!!$R1 794
10 TraesCS2D01G256300 chr7D 334174861 334175658 797 True 1195 1195 93.742 1589 2385 1 chr7D.!!$R1 796
11 TraesCS2D01G256300 chr7D 376381812 376382611 799 False 1195 1195 93.641 1585 2385 1 chr7D.!!$F1 800
12 TraesCS2D01G256300 chr7A 232524090 232525024 934 False 680 680 79.808 657 1591 1 chr7A.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 639 0.038159 AGCAGCAACTGACGTACCTC 60.038 55.0 0.0 0.0 32.44 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1694 0.036164 CGGTTTCTGGGTCATGTGGA 59.964 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.147824 CTCATCCCAGGAGCGCAAT 59.852 57.895 11.47 0.00 0.00 3.56
60 61 7.627513 GCAATCATTTAACATTCGACCCTACAA 60.628 37.037 0.00 0.00 0.00 2.41
66 67 2.002586 CATTCGACCCTACAAGCACAG 58.997 52.381 0.00 0.00 0.00 3.66
83 84 2.149383 AGGCCAGAGCACAAGGACA 61.149 57.895 5.01 0.00 42.56 4.02
89 90 3.445096 GCCAGAGCACAAGGACAAAATAT 59.555 43.478 0.00 0.00 39.53 1.28
94 95 7.044181 CAGAGCACAAGGACAAAATATAGAGA 58.956 38.462 0.00 0.00 0.00 3.10
100 101 8.660373 CACAAGGACAAAATATAGAGACAAGTC 58.340 37.037 0.00 0.00 0.00 3.01
109 110 9.930693 AAAATATAGAGACAAGTCGAAGAACTT 57.069 29.630 0.00 0.00 39.69 2.66
183 184 8.468399 AGTAATCCTAGTTAAGAAGAAAGACGG 58.532 37.037 0.00 0.00 0.00 4.79
187 188 4.067972 AGTTAAGAAGAAAGACGGCACA 57.932 40.909 0.00 0.00 0.00 4.57
197 198 1.521681 GACGGCACATGGAGGCTAC 60.522 63.158 11.24 0.00 0.00 3.58
210 211 2.607282 GGAGGCTACGTGTGGATTATCG 60.607 54.545 0.00 0.00 0.00 2.92
217 218 2.097954 ACGTGTGGATTATCGTCGCTTA 59.902 45.455 0.00 0.00 30.71 3.09
229 230 1.739067 GTCGCTTAAATGCCCTCACT 58.261 50.000 0.00 0.00 0.00 3.41
265 266 6.540189 AGTTTCCGATACCAATCATTGAAGAG 59.460 38.462 0.00 0.00 31.93 2.85
268 269 4.818546 CCGATACCAATCATTGAAGAGCTT 59.181 41.667 0.00 0.00 31.93 3.74
274 275 4.888239 CCAATCATTGAAGAGCTTCTGGAT 59.112 41.667 11.16 8.32 40.14 3.41
313 316 3.369471 GGTGGTTCTCGAATGGATCTTCA 60.369 47.826 0.00 0.00 0.00 3.02
381 384 3.507162 TGGCTTTTCAGACTCATTCCA 57.493 42.857 0.00 0.00 0.00 3.53
416 419 0.482446 TGGTGGTCTCATTTGGCCTT 59.518 50.000 3.32 0.00 0.00 4.35
437 440 4.354162 GGCGGCCCAACCACCTTA 62.354 66.667 8.12 0.00 37.69 2.69
464 467 4.646492 GGGGCAATACATTTCACTCTGAAT 59.354 41.667 0.00 0.00 36.11 2.57
524 527 4.857251 CTGGTATTCAGCCGGACC 57.143 61.111 5.05 2.43 36.60 4.46
588 591 1.812686 TTCGACGGGACCACTGGAAG 61.813 60.000 0.71 0.00 42.29 3.46
615 618 3.258372 AGATGAGTAAGTGCTCGTTTGGA 59.742 43.478 0.00 0.00 38.28 3.53
636 639 0.038159 AGCAGCAACTGACGTACCTC 60.038 55.000 0.00 0.00 32.44 3.85
637 640 0.319555 GCAGCAACTGACGTACCTCA 60.320 55.000 0.00 0.00 32.44 3.86
653 656 0.461516 CTCAGGCATGTCATCAGCGT 60.462 55.000 0.00 0.00 0.00 5.07
655 658 2.110967 AGGCATGTCATCAGCGTGC 61.111 57.895 0.00 0.00 45.28 5.34
664 667 2.894257 ATCAGCGTGCAAGGGGTCA 61.894 57.895 0.79 0.00 0.00 4.02
708 711 2.036346 GGCAGTCACAAATTGGAAAGCT 59.964 45.455 0.00 0.00 0.00 3.74
714 717 3.751175 TCACAAATTGGAAAGCTCCTACG 59.249 43.478 0.00 0.00 42.94 3.51
731 734 6.349243 TCCTACGAACATTAAGGAAGTTCA 57.651 37.500 5.01 0.00 41.17 3.18
734 737 6.594159 CCTACGAACATTAAGGAAGTTCACAT 59.406 38.462 5.01 0.00 41.17 3.21
739 742 8.076178 CGAACATTAAGGAAGTTCACATTTTCT 58.924 33.333 5.01 0.00 41.17 2.52
773 776 6.338146 CCGGATACTACAGAAGATTTGTTCA 58.662 40.000 0.00 0.00 0.00 3.18
792 795 2.086869 CACAACTTCGGGATCATTGCT 58.913 47.619 0.00 0.00 0.00 3.91
804 807 5.299279 CGGGATCATTGCTAAACCACTATTT 59.701 40.000 0.00 0.00 0.00 1.40
825 828 5.576563 TTCATCTCCTCAAAAAGGGTGTA 57.423 39.130 0.00 0.00 46.23 2.90
864 867 5.047377 ACAAACAACTGAAGAAGCTTTCCAA 60.047 36.000 0.00 0.00 0.00 3.53
868 871 3.891049 ACTGAAGAAGCTTTCCAACTGT 58.109 40.909 0.00 0.00 0.00 3.55
897 900 3.194329 CACAGTTGATCTCAGCTCCAGTA 59.806 47.826 0.00 0.00 35.16 2.74
910 913 2.032620 CTCCAGTACTCGCCTTACCAT 58.967 52.381 0.00 0.00 0.00 3.55
928 931 4.352009 ACCATATTTCACCAAGCCATTCA 58.648 39.130 0.00 0.00 0.00 2.57
951 954 1.909376 TAGAAACAGATGCGAGCGAC 58.091 50.000 0.00 0.00 0.00 5.19
1022 1025 2.277591 GCAAGGCATTGGCACCTCA 61.278 57.895 13.70 0.00 43.71 3.86
1033 1036 1.555075 TGGCACCTCACTATCAAGGAC 59.445 52.381 0.00 0.00 36.46 3.85
1045 1048 8.589701 TCACTATCAAGGACTGTCAACTTATA 57.410 34.615 10.38 0.55 0.00 0.98
1069 1072 5.499004 AAAGGAGTACTTGGCAGTGATAA 57.501 39.130 0.00 0.00 39.96 1.75
1083 1086 5.178996 GGCAGTGATAATAGCAGTTGATCAG 59.821 44.000 0.00 0.00 0.00 2.90
1089 1092 0.608130 TAGCAGTTGATCAGTGGCGT 59.392 50.000 8.72 2.28 0.00 5.68
1130 1133 6.879458 GGAGAATTTGTAATACACACAGACCT 59.121 38.462 0.00 0.00 36.69 3.85
1149 1152 2.556114 CCTGAAAAGCCTCATCCACCTT 60.556 50.000 0.00 0.00 0.00 3.50
1161 1164 0.756294 TCCACCTTGAAGAGCAACGA 59.244 50.000 0.00 0.00 31.96 3.85
1169 1172 5.163602 ACCTTGAAGAGCAACGACTATCTAG 60.164 44.000 0.00 0.00 31.96 2.43
1173 1176 1.000052 GAGCAACGACTATCTAGCCCC 60.000 57.143 0.00 0.00 0.00 5.80
1236 1239 6.998673 AGTACACCATCAAATATAAGAAGGGC 59.001 38.462 0.00 0.00 0.00 5.19
1237 1240 6.018433 ACACCATCAAATATAAGAAGGGCT 57.982 37.500 4.31 0.00 0.00 5.19
1252 1255 0.178068 GGGCTCGGAGAATACAGCAA 59.822 55.000 9.69 0.00 34.09 3.91
1255 1258 0.924090 CTCGGAGAATACAGCAACGC 59.076 55.000 0.00 0.00 34.09 4.84
1269 1272 0.733909 CAACGCATGCTCTGTCTCGA 60.734 55.000 17.13 0.00 0.00 4.04
1307 1310 2.644151 ACTTACCCCAATCACCTCCTT 58.356 47.619 0.00 0.00 0.00 3.36
1359 1362 3.806521 CCAGCTACAATTCGAATCCTCAG 59.193 47.826 11.83 7.72 0.00 3.35
1400 1403 0.618458 TTAGCAATTCGCCCAGACCT 59.382 50.000 0.00 0.00 44.04 3.85
1410 1413 1.679032 CGCCCAGACCTAAAAGGAAGG 60.679 57.143 0.00 0.00 37.67 3.46
1444 1447 1.722034 AGGACTGCTCAGGTTCAGAA 58.278 50.000 1.66 0.00 34.57 3.02
1461 1464 1.518903 GAAGGCGAATATGGCTGGGC 61.519 60.000 0.00 0.00 45.07 5.36
1464 1467 2.425592 CGAATATGGCTGGGCGGA 59.574 61.111 0.00 0.00 0.00 5.54
1471 1474 4.864334 GGCTGGGCGGATCCACAG 62.864 72.222 18.82 18.82 36.68 3.66
1533 1536 3.090765 GGGGGACATTCAGGCAGT 58.909 61.111 0.00 0.00 0.00 4.40
1549 1552 1.341531 GCAGTCCAGCTACATACCGAT 59.658 52.381 0.00 0.00 0.00 4.18
1681 1684 0.614979 AGTGAGTGTGGGCGATAGGT 60.615 55.000 0.00 0.00 0.00 3.08
1690 1694 1.632965 GGGCGATAGGTGGGTCCTTT 61.633 60.000 0.00 0.00 45.67 3.11
1714 1718 1.189524 ATGACCCAGAAACCGTCGGA 61.190 55.000 20.51 0.00 0.00 4.55
1790 1794 3.527533 AGCGCTCAAATACGGAAATACA 58.472 40.909 2.64 0.00 0.00 2.29
1791 1795 3.936453 AGCGCTCAAATACGGAAATACAA 59.064 39.130 2.64 0.00 0.00 2.41
1882 1888 1.202557 AGTCACCGCTAAACGTTTCCA 60.203 47.619 18.42 0.00 41.42 3.53
1897 1903 6.922980 ACGTTTCCATTCGTATATACATCG 57.077 37.500 13.22 5.21 38.52 3.84
1929 1935 3.792124 GCTCCAAGGAAAACGTTTCTGTG 60.792 47.826 15.01 9.98 0.00 3.66
1994 2000 2.157834 AGCGTTTCCATTACACACGA 57.842 45.000 0.00 0.00 32.51 4.35
2127 2133 1.964373 AGGTGGCCTAACGCAAACG 60.964 57.895 3.32 0.00 40.31 3.60
2140 2146 1.599419 CGCAAACGGTTTTCAAGAGGG 60.599 52.381 2.79 0.00 34.97 4.30
2228 2234 1.083657 CGCACACGGTGTTTTCTCG 60.084 57.895 11.82 6.64 35.75 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.711704 GGGATGAGAGGAATCTTGTGGTA 59.288 47.826 0.00 0.00 0.00 3.25
19 20 1.340399 ATTGCGCTCCTGGGATGAGA 61.340 55.000 9.73 0.00 31.26 3.27
38 39 5.353123 GCTTGTAGGGTCGAATGTTAAATGA 59.647 40.000 0.00 0.00 0.00 2.57
60 61 3.124051 TTGTGCTCTGGCCTGTGCT 62.124 57.895 29.23 0.00 37.74 4.40
66 67 0.823356 TTTGTCCTTGTGCTCTGGCC 60.823 55.000 0.00 0.00 37.74 5.36
83 84 9.930693 AAGTTCTTCGACTTGTCTCTATATTTT 57.069 29.630 0.00 0.00 38.39 1.82
89 90 5.181622 GGAGAAGTTCTTCGACTTGTCTCTA 59.818 44.000 6.88 0.00 44.73 2.43
183 184 1.079127 ACACGTAGCCTCCATGTGC 60.079 57.895 0.00 0.00 36.56 4.57
187 188 1.204146 AATCCACACGTAGCCTCCAT 58.796 50.000 0.00 0.00 0.00 3.41
197 198 1.556564 AAGCGACGATAATCCACACG 58.443 50.000 0.00 0.00 0.00 4.49
210 211 1.739067 AGTGAGGGCATTTAAGCGAC 58.261 50.000 0.00 0.00 34.64 5.19
229 230 2.404923 TCGGAAACTTGGTCACACAA 57.595 45.000 0.00 0.00 0.00 3.33
265 266 0.445436 CGTGCAACTCATCCAGAAGC 59.555 55.000 0.00 0.00 31.75 3.86
268 269 1.375908 GCCGTGCAACTCATCCAGA 60.376 57.895 0.00 0.00 31.75 3.86
291 292 2.990066 AGATCCATTCGAGAACCACC 57.010 50.000 0.00 0.00 0.00 4.61
361 364 3.415212 CTGGAATGAGTCTGAAAAGCCA 58.585 45.455 0.00 0.00 0.00 4.75
381 384 2.493278 CCACCAAGAATTCGAAATGCCT 59.507 45.455 0.00 0.00 0.00 4.75
425 428 1.567357 CCCCATTTAAGGTGGTTGGG 58.433 55.000 7.84 0.00 45.52 4.12
437 440 5.025453 AGAGTGAAATGTATTGCCCCATTT 58.975 37.500 0.00 0.00 42.37 2.32
545 548 4.844420 CCAAGGTTTGGCGCAAAA 57.156 50.000 10.83 8.15 45.17 2.44
588 591 3.182967 CGAGCACTTACTCATCTTGACC 58.817 50.000 0.00 0.00 36.42 4.02
615 618 0.600255 GGTACGTCAGTTGCTGCTGT 60.600 55.000 0.00 0.00 37.70 4.40
636 639 1.719709 CACGCTGATGACATGCCTG 59.280 57.895 0.00 0.00 0.00 4.85
637 640 2.110967 GCACGCTGATGACATGCCT 61.111 57.895 0.00 0.00 0.00 4.75
653 656 2.075566 TCAGTGGTGACCCCTTGCA 61.076 57.895 0.00 0.00 0.00 4.08
655 658 4.800554 GTCAGTGGTGACCCCTTG 57.199 61.111 0.00 0.00 46.58 3.61
664 667 3.138283 TGAATCTTTTCTGGGTCAGTGGT 59.862 43.478 0.00 0.00 32.61 4.16
675 678 4.090761 TGTGACTGCCTGAATCTTTTCT 57.909 40.909 0.00 0.00 32.78 2.52
708 711 6.161381 GTGAACTTCCTTAATGTTCGTAGGA 58.839 40.000 0.00 0.00 41.88 2.94
714 717 9.750125 AAGAAAATGTGAACTTCCTTAATGTTC 57.250 29.630 0.00 0.00 40.09 3.18
731 734 1.550072 CGGCCAATCCCAAGAAAATGT 59.450 47.619 2.24 0.00 0.00 2.71
734 737 0.113385 TCCGGCCAATCCCAAGAAAA 59.887 50.000 2.24 0.00 0.00 2.29
739 742 1.418637 GTAGTATCCGGCCAATCCCAA 59.581 52.381 2.24 0.00 0.00 4.12
773 776 2.496899 AGCAATGATCCCGAAGTTGT 57.503 45.000 0.00 0.00 0.00 3.32
792 795 9.581289 TTTTTGAGGAGATGAAATAGTGGTTTA 57.419 29.630 0.00 0.00 0.00 2.01
849 852 4.269183 TCAACAGTTGGAAAGCTTCTTCA 58.731 39.130 13.52 0.00 0.00 3.02
864 867 5.647658 TGAGATCAACTGTGTTTTCAACAGT 59.352 36.000 3.44 3.44 43.10 3.55
868 871 4.883585 AGCTGAGATCAACTGTGTTTTCAA 59.116 37.500 0.00 0.00 0.00 2.69
897 900 3.199071 TGGTGAAATATGGTAAGGCGAGT 59.801 43.478 0.00 0.00 0.00 4.18
910 913 3.772387 TGGTGAATGGCTTGGTGAAATA 58.228 40.909 0.00 0.00 0.00 1.40
928 931 2.555199 GCTCGCATCTGTTTCTATGGT 58.445 47.619 0.00 0.00 0.00 3.55
975 978 0.886490 CTATCGGATGGCCCTGTTGC 60.886 60.000 0.00 0.00 0.00 4.17
1045 1048 4.164843 TCACTGCCAAGTACTCCTTTTT 57.835 40.909 0.00 0.00 33.79 1.94
1050 1053 4.991687 GCTATTATCACTGCCAAGTACTCC 59.008 45.833 0.00 0.00 33.79 3.85
1069 1072 1.208052 ACGCCACTGATCAACTGCTAT 59.792 47.619 0.00 0.00 0.00 2.97
1083 1086 1.066430 TGTTGAAGATAGGGACGCCAC 60.066 52.381 0.00 0.00 0.00 5.01
1089 1092 6.581388 AATTCTCCATGTTGAAGATAGGGA 57.419 37.500 0.00 0.00 0.00 4.20
1130 1133 2.108075 TCAAGGTGGATGAGGCTTTTCA 59.892 45.455 0.00 0.00 0.00 2.69
1149 1152 3.066900 GGCTAGATAGTCGTTGCTCTTCA 59.933 47.826 0.00 0.00 0.00 3.02
1188 1191 3.251004 GCAGACCCAACAGTTTAGTGAAG 59.749 47.826 0.00 0.00 0.00 3.02
1236 1239 0.924090 GCGTTGCTGTATTCTCCGAG 59.076 55.000 0.00 0.00 0.00 4.63
1237 1240 0.245266 TGCGTTGCTGTATTCTCCGA 59.755 50.000 0.00 0.00 0.00 4.55
1252 1255 1.138459 CTCGAGACAGAGCATGCGT 59.862 57.895 13.01 3.92 0.00 5.24
1269 1272 5.069781 GGTAAGTATCTCATCTGGTTCAGCT 59.930 44.000 0.00 0.00 0.00 4.24
1323 1326 4.809193 TGTAGCTGGTCAGGATATCTTCT 58.191 43.478 2.05 0.00 0.00 2.85
1372 1375 2.423538 GGCGAATTGCTAACTGTTCCAT 59.576 45.455 0.00 0.00 45.43 3.41
1400 1403 5.365605 TGAGTGAGAGTGAACCTTCCTTTTA 59.634 40.000 0.00 0.00 0.00 1.52
1410 1413 3.648009 CAGTCCTTGAGTGAGAGTGAAC 58.352 50.000 0.00 0.00 35.20 3.18
1444 1447 2.113986 GCCCAGCCATATTCGCCT 59.886 61.111 0.00 0.00 0.00 5.52
1461 1464 1.440893 CTGGAGAGCTGTGGATCCG 59.559 63.158 7.39 0.00 34.39 4.18
1464 1467 0.616964 TCTGCTGGAGAGCTGTGGAT 60.617 55.000 0.00 0.00 46.39 3.41
1471 1474 3.316283 CGATAATCTTCTGCTGGAGAGC 58.684 50.000 7.72 0.00 46.44 4.09
1532 1535 1.068588 TGCATCGGTATGTAGCTGGAC 59.931 52.381 0.00 0.00 35.38 4.02
1533 1536 1.408969 TGCATCGGTATGTAGCTGGA 58.591 50.000 0.00 0.00 35.38 3.86
1549 1552 1.741401 CAAAGAGTCGCCGGATGCA 60.741 57.895 5.05 0.00 41.33 3.96
1632 1635 1.511887 CCAAATGCCGTCGCGAAAG 60.512 57.895 12.06 8.31 38.08 2.62
1635 1638 2.357638 TTCCAAATGCCGTCGCGA 60.358 55.556 3.71 3.71 38.08 5.87
1681 1684 0.404040 GGTCATGTGGAAAGGACCCA 59.596 55.000 0.00 0.00 43.14 4.51
1690 1694 0.036164 CGGTTTCTGGGTCATGTGGA 59.964 55.000 0.00 0.00 0.00 4.02
1824 1829 3.754323 ACTTGCGACCGGAAATTATTTCA 59.246 39.130 17.92 0.00 41.43 2.69
1830 1835 2.172851 TGTACTTGCGACCGGAAATT 57.827 45.000 9.46 0.00 0.00 1.82
1882 1888 5.769367 ACTGTGTGCGATGTATATACGAAT 58.231 37.500 8.33 0.00 0.00 3.34
1897 1903 2.320587 CCTTGGAGCGACTGTGTGC 61.321 63.158 0.00 0.00 0.00 4.57
1929 1935 0.865111 TGTGTGTGATGTACTTGCGC 59.135 50.000 0.00 0.00 0.00 6.09
2045 2051 2.618709 CCCTTGACACACAGTTTCTTCC 59.381 50.000 0.00 0.00 0.00 3.46
2079 2085 7.513969 GCAAACGTTTACCACATAAAAACTGTC 60.514 37.037 14.20 0.00 34.50 3.51
2127 2133 1.602377 CACGACACCCTCTTGAAAACC 59.398 52.381 0.00 0.00 0.00 3.27
2140 2146 3.878086 ATGAACAATCACACACGACAC 57.122 42.857 0.00 0.00 38.69 3.67
2228 2234 7.870445 TGGGTTTTTCTATTGCAAACAGTTATC 59.130 33.333 1.71 0.00 32.92 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.