Multiple sequence alignment - TraesCS2D01G256200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G256200 chr2D 100.000 3836 0 0 1 3836 309575715 309579550 0.000000e+00 7084.0
1 TraesCS2D01G256200 chr2D 89.655 232 21 3 169 399 159693717 159693488 3.750000e-75 292.0
2 TraesCS2D01G256200 chr2D 87.179 234 27 3 167 399 159703037 159703268 2.940000e-66 263.0
3 TraesCS2D01G256200 chr2D 76.493 519 92 18 2079 2591 81516751 81516257 4.920000e-64 255.0
4 TraesCS2D01G256200 chr2D 81.818 187 26 6 117 296 187522715 187522900 2.390000e-32 150.0
5 TraesCS2D01G256200 chr2B 97.139 2167 47 6 659 2813 362694656 362692493 0.000000e+00 3644.0
6 TraesCS2D01G256200 chr2B 96.000 50 0 2 2817 2865 275331981 275331933 3.180000e-11 80.5
7 TraesCS2D01G256200 chr2A 96.774 1984 45 9 658 2626 429719348 429717369 0.000000e+00 3291.0
8 TraesCS2D01G256200 chr2A 93.082 159 6 3 2654 2808 429717077 429716920 1.070000e-55 228.0
9 TraesCS2D01G256200 chr2A 95.745 47 1 1 612 657 429720010 429719964 1.480000e-09 75.0
10 TraesCS2D01G256200 chrUn 95.993 574 23 0 2810 3383 132133425 132133998 0.000000e+00 933.0
11 TraesCS2D01G256200 chrUn 97.149 456 7 5 3384 3836 132134261 132134713 0.000000e+00 765.0
12 TraesCS2D01G256200 chr6D 91.552 580 36 5 2808 3384 288453910 288454479 0.000000e+00 787.0
13 TraesCS2D01G256200 chr6D 94.066 455 25 1 3384 3836 288454576 288455030 0.000000e+00 689.0
14 TraesCS2D01G256200 chr7B 92.035 565 35 1 2814 3378 77544567 77545121 0.000000e+00 785.0
15 TraesCS2D01G256200 chr7B 90.175 570 43 3 2814 3383 708572280 708571724 0.000000e+00 730.0
16 TraesCS2D01G256200 chr7B 93.187 455 29 1 3384 3836 708571626 708571172 0.000000e+00 667.0
17 TraesCS2D01G256200 chr7B 93.539 356 18 4 3384 3737 77545486 77545838 3.390000e-145 525.0
18 TraesCS2D01G256200 chr7B 80.882 204 35 4 202 403 168066734 168066533 1.430000e-34 158.0
19 TraesCS2D01G256200 chr7B 80.745 161 29 2 201 360 168068029 168068188 1.450000e-24 124.0
20 TraesCS2D01G256200 chr7B 100.000 35 0 0 3325 3359 708571940 708571906 8.900000e-07 65.8
21 TraesCS2D01G256200 chr1D 91.579 570 37 6 2814 3383 424139002 424138444 0.000000e+00 776.0
22 TraesCS2D01G256200 chr1D 96.711 456 12 2 3384 3836 94044752 94045207 0.000000e+00 756.0
23 TraesCS2D01G256200 chr1D 90.625 576 21 7 2808 3383 94044104 94044646 0.000000e+00 734.0
24 TraesCS2D01G256200 chr1D 94.518 456 22 2 3384 3836 424138348 424137893 0.000000e+00 701.0
25 TraesCS2D01G256200 chr3B 94.737 456 19 3 3384 3836 88534510 88534057 0.000000e+00 704.0
26 TraesCS2D01G256200 chr3B 91.163 430 28 1 2954 3383 88535208 88534789 3.320000e-160 575.0
27 TraesCS2D01G256200 chr4B 89.123 570 37 7 2814 3383 217056050 217055506 0.000000e+00 686.0
28 TraesCS2D01G256200 chr4B 100.000 33 0 0 3325 3357 217055707 217055675 1.150000e-05 62.1
29 TraesCS2D01G256200 chr6A 92.070 454 32 3 3386 3836 441158801 441158349 1.500000e-178 636.0
30 TraesCS2D01G256200 chr1B 95.225 377 14 2 3462 3836 565826219 565826593 9.180000e-166 593.0
31 TraesCS2D01G256200 chr1B 89.930 427 33 1 2954 3380 565825332 565825748 3.370000e-150 542.0
32 TraesCS2D01G256200 chr7A 88.025 476 35 6 2814 3279 734568225 734567762 9.370000e-151 544.0
33 TraesCS2D01G256200 chr7A 77.247 523 86 19 2079 2591 487477319 487477818 3.770000e-70 276.0
34 TraesCS2D01G256200 chr5B 78.201 656 116 16 1148 1788 586866226 586865583 9.990000e-106 394.0
35 TraesCS2D01G256200 chr5B 77.910 670 111 26 1959 2619 586865554 586864913 2.160000e-102 383.0
36 TraesCS2D01G256200 chr5B 76.735 533 89 21 2079 2601 625120718 625120211 8.170000e-67 265.0
37 TraesCS2D01G256200 chr5B 76.735 533 89 21 2079 2601 628700267 628699760 8.170000e-67 265.0
38 TraesCS2D01G256200 chr5B 84.848 264 35 5 133 393 4434 4173 1.060000e-65 261.0
39 TraesCS2D01G256200 chr5A 77.961 667 111 23 1962 2619 597840996 597840357 6.010000e-103 385.0
40 TraesCS2D01G256200 chr5A 77.225 663 122 18 1148 1788 597841682 597841027 1.010000e-95 361.0
41 TraesCS2D01G256200 chr5A 81.527 406 47 17 1 400 575291996 575292379 3.720000e-80 309.0
42 TraesCS2D01G256200 chr5D 77.812 658 118 19 1148 1788 479127018 479126372 7.780000e-102 381.0
43 TraesCS2D01G256200 chr5D 77.463 670 114 24 1959 2619 479126343 479125702 2.180000e-97 366.0
44 TraesCS2D01G256200 chr5D 88.034 234 26 2 167 399 78134455 78134223 3.770000e-70 276.0
45 TraesCS2D01G256200 chr3D 84.833 389 38 11 1 384 574718744 574719116 4.680000e-99 372.0
46 TraesCS2D01G256200 chr3D 81.407 199 33 4 202 398 382735352 382735548 3.970000e-35 159.0
47 TraesCS2D01G256200 chr6B 77.049 549 92 21 2079 2619 615609089 615608567 6.270000e-73 285.0
48 TraesCS2D01G256200 chr6B 85.837 233 29 3 2389 2619 507372167 507372397 1.060000e-60 244.0
49 TraesCS2D01G256200 chr3A 87.336 229 29 0 171 399 709972712 709972484 2.940000e-66 263.0
50 TraesCS2D01G256200 chr4D 80.000 205 37 4 201 403 111580209 111580007 8.590000e-32 148.0
51 TraesCS2D01G256200 chr4D 78.713 202 39 4 201 400 111581491 111581690 8.650000e-27 132.0
52 TraesCS2D01G256200 chr7D 100.000 28 0 0 1210 1237 544676250 544676277 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G256200 chr2D 309575715 309579550 3835 False 7084.00 7084 100.000000 1 3836 1 chr2D.!!$F3 3835
1 TraesCS2D01G256200 chr2B 362692493 362694656 2163 True 3644.00 3644 97.139000 659 2813 1 chr2B.!!$R2 2154
2 TraesCS2D01G256200 chr2A 429716920 429720010 3090 True 1198.00 3291 95.200333 612 2808 3 chr2A.!!$R1 2196
3 TraesCS2D01G256200 chrUn 132133425 132134713 1288 False 849.00 933 96.571000 2810 3836 2 chrUn.!!$F1 1026
4 TraesCS2D01G256200 chr6D 288453910 288455030 1120 False 738.00 787 92.809000 2808 3836 2 chr6D.!!$F1 1028
5 TraesCS2D01G256200 chr7B 77544567 77545838 1271 False 655.00 785 92.787000 2814 3737 2 chr7B.!!$F2 923
6 TraesCS2D01G256200 chr7B 708571172 708572280 1108 True 487.60 730 94.454000 2814 3836 3 chr7B.!!$R2 1022
7 TraesCS2D01G256200 chr1D 94044104 94045207 1103 False 745.00 756 93.668000 2808 3836 2 chr1D.!!$F1 1028
8 TraesCS2D01G256200 chr1D 424137893 424139002 1109 True 738.50 776 93.048500 2814 3836 2 chr1D.!!$R1 1022
9 TraesCS2D01G256200 chr3B 88534057 88535208 1151 True 639.50 704 92.950000 2954 3836 2 chr3B.!!$R1 882
10 TraesCS2D01G256200 chr4B 217055506 217056050 544 True 374.05 686 94.561500 2814 3383 2 chr4B.!!$R1 569
11 TraesCS2D01G256200 chr1B 565825332 565826593 1261 False 567.50 593 92.577500 2954 3836 2 chr1B.!!$F1 882
12 TraesCS2D01G256200 chr5B 586864913 586866226 1313 True 388.50 394 78.055500 1148 2619 2 chr5B.!!$R4 1471
13 TraesCS2D01G256200 chr5B 625120211 625120718 507 True 265.00 265 76.735000 2079 2601 1 chr5B.!!$R2 522
14 TraesCS2D01G256200 chr5B 628699760 628700267 507 True 265.00 265 76.735000 2079 2601 1 chr5B.!!$R3 522
15 TraesCS2D01G256200 chr5A 597840357 597841682 1325 True 373.00 385 77.593000 1148 2619 2 chr5A.!!$R1 1471
16 TraesCS2D01G256200 chr5D 479125702 479127018 1316 True 373.50 381 77.637500 1148 2619 2 chr5D.!!$R2 1471
17 TraesCS2D01G256200 chr6B 615608567 615609089 522 True 285.00 285 77.049000 2079 2619 1 chr6B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 538 0.030101 ATTGGTTGCGGACACAAACG 59.970 50.000 0.00 0.0 40.24 3.60 F
596 597 0.033228 CATGGCGGCAAACCAAAAGA 59.967 50.000 18.31 0.0 41.49 2.52 F
598 599 0.537188 TGGCGGCAAACCAAAAGAAA 59.463 45.000 10.22 0.0 33.12 2.52 F
599 600 1.066143 TGGCGGCAAACCAAAAGAAAA 60.066 42.857 10.22 0.0 33.12 2.29 F
600 601 2.010497 GGCGGCAAACCAAAAGAAAAA 58.990 42.857 3.07 0.0 34.57 1.94 F
779 1406 2.048127 GTGTCACACCTCCGAGCC 60.048 66.667 0.00 0.0 0.00 4.70 F
2683 3626 2.519541 TGGCGAGATCGAGGGAGG 60.520 66.667 6.39 0.0 43.02 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 2110 0.882927 GTACACGGCAACCTTGAGCA 60.883 55.000 0.00 0.0 0.00 4.26 R
1852 2523 4.456535 TGAGGAATTCCGTCAGAACAAAA 58.543 39.130 18.82 0.0 42.08 2.44 R
2366 3045 4.745751 CCGTACCCGCCGCTGAAA 62.746 66.667 0.00 0.0 0.00 2.69 R
2645 3324 1.577468 CACCGCTGTACAGTTTGTGA 58.423 50.000 24.79 0.0 0.00 3.58 R
2683 3626 2.040544 CCTGAACCACCACCATCGC 61.041 63.158 0.00 0.0 0.00 4.58 R
2717 3660 0.179134 GGACAGTCGATCTTCCACGG 60.179 60.000 0.00 0.0 0.00 4.94 R
3639 5010 3.055094 ACAAAACTCGGATGTGCCTCTAT 60.055 43.478 0.00 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.885861 GGTGAGCTCCGACGATGT 59.114 61.111 12.15 0.00 0.00 3.06
26 27 1.226717 GGTGAGCTCCGACGATGTC 60.227 63.158 12.15 0.00 0.00 3.06
35 36 3.398920 GACGATGTCGCCATGGTG 58.601 61.111 19.75 19.75 39.74 4.17
36 37 2.125147 ACGATGTCGCCATGGTGG 60.125 61.111 24.82 11.81 44.43 4.61
45 46 2.347114 CCATGGTGGCTGACGTCA 59.653 61.111 18.88 18.88 0.00 4.35
46 47 1.742880 CCATGGTGGCTGACGTCAG 60.743 63.158 35.80 35.80 46.40 3.51
68 69 3.714001 CAGCCAGCTCAGCCTCCA 61.714 66.667 0.00 0.00 0.00 3.86
69 70 3.400928 AGCCAGCTCAGCCTCCAG 61.401 66.667 0.00 0.00 0.00 3.86
89 90 3.730761 GCAGCAGCTCCAACGGTG 61.731 66.667 0.00 0.00 37.91 4.94
91 92 4.335647 AGCAGCTCCAACGGTGGG 62.336 66.667 21.90 11.84 46.01 4.61
92 93 4.329545 GCAGCTCCAACGGTGGGA 62.330 66.667 21.90 3.76 46.01 4.37
97 98 3.319198 TCCAACGGTGGGAGAGGC 61.319 66.667 21.90 0.00 46.01 4.70
98 99 3.636231 CCAACGGTGGGAGAGGCA 61.636 66.667 13.17 0.00 41.77 4.75
99 100 2.429930 CAACGGTGGGAGAGGCAA 59.570 61.111 0.00 0.00 0.00 4.52
100 101 1.228124 CAACGGTGGGAGAGGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
101 102 1.073199 AACGGTGGGAGAGGCAAAG 59.927 57.895 0.00 0.00 0.00 2.77
102 103 1.415672 AACGGTGGGAGAGGCAAAGA 61.416 55.000 0.00 0.00 0.00 2.52
103 104 1.376037 CGGTGGGAGAGGCAAAGAC 60.376 63.158 0.00 0.00 0.00 3.01
104 105 1.376037 GGTGGGAGAGGCAAAGACG 60.376 63.158 0.00 0.00 0.00 4.18
105 106 1.671742 GTGGGAGAGGCAAAGACGA 59.328 57.895 0.00 0.00 0.00 4.20
106 107 0.390472 GTGGGAGAGGCAAAGACGAG 60.390 60.000 0.00 0.00 0.00 4.18
107 108 1.219393 GGGAGAGGCAAAGACGAGG 59.781 63.158 0.00 0.00 0.00 4.63
108 109 1.219393 GGAGAGGCAAAGACGAGGG 59.781 63.158 0.00 0.00 0.00 4.30
109 110 1.258445 GGAGAGGCAAAGACGAGGGA 61.258 60.000 0.00 0.00 0.00 4.20
110 111 0.608640 GAGAGGCAAAGACGAGGGAA 59.391 55.000 0.00 0.00 0.00 3.97
111 112 0.321996 AGAGGCAAAGACGAGGGAAC 59.678 55.000 0.00 0.00 0.00 3.62
112 113 0.034896 GAGGCAAAGACGAGGGAACA 59.965 55.000 0.00 0.00 0.00 3.18
113 114 0.035458 AGGCAAAGACGAGGGAACAG 59.965 55.000 0.00 0.00 0.00 3.16
114 115 0.955919 GGCAAAGACGAGGGAACAGG 60.956 60.000 0.00 0.00 0.00 4.00
115 116 0.034896 GCAAAGACGAGGGAACAGGA 59.965 55.000 0.00 0.00 0.00 3.86
116 117 1.941668 GCAAAGACGAGGGAACAGGAG 60.942 57.143 0.00 0.00 0.00 3.69
117 118 1.618837 CAAAGACGAGGGAACAGGAGA 59.381 52.381 0.00 0.00 0.00 3.71
118 119 2.234908 CAAAGACGAGGGAACAGGAGAT 59.765 50.000 0.00 0.00 0.00 2.75
119 120 3.383698 AAGACGAGGGAACAGGAGATA 57.616 47.619 0.00 0.00 0.00 1.98
120 121 2.657143 AGACGAGGGAACAGGAGATAC 58.343 52.381 0.00 0.00 0.00 2.24
121 122 2.025226 AGACGAGGGAACAGGAGATACA 60.025 50.000 0.00 0.00 0.00 2.29
122 123 2.758979 GACGAGGGAACAGGAGATACAA 59.241 50.000 0.00 0.00 0.00 2.41
123 124 3.375699 ACGAGGGAACAGGAGATACAAT 58.624 45.455 0.00 0.00 0.00 2.71
124 125 3.133003 ACGAGGGAACAGGAGATACAATG 59.867 47.826 0.00 0.00 0.00 2.82
125 126 3.384789 CGAGGGAACAGGAGATACAATGA 59.615 47.826 0.00 0.00 0.00 2.57
126 127 4.039730 CGAGGGAACAGGAGATACAATGAT 59.960 45.833 0.00 0.00 0.00 2.45
127 128 5.453903 CGAGGGAACAGGAGATACAATGATT 60.454 44.000 0.00 0.00 0.00 2.57
128 129 5.688807 AGGGAACAGGAGATACAATGATTG 58.311 41.667 3.16 3.16 0.00 2.67
129 130 5.429762 AGGGAACAGGAGATACAATGATTGA 59.570 40.000 12.80 0.00 0.00 2.57
130 131 5.529060 GGGAACAGGAGATACAATGATTGAC 59.471 44.000 12.80 3.26 0.00 3.18
131 132 5.529060 GGAACAGGAGATACAATGATTGACC 59.471 44.000 12.80 7.00 0.00 4.02
132 133 4.697514 ACAGGAGATACAATGATTGACCG 58.302 43.478 12.80 6.38 0.00 4.79
133 134 4.060900 CAGGAGATACAATGATTGACCGG 58.939 47.826 12.80 0.00 0.00 5.28
134 135 3.071602 AGGAGATACAATGATTGACCGGG 59.928 47.826 12.80 0.00 0.00 5.73
135 136 3.403038 GAGATACAATGATTGACCGGGG 58.597 50.000 12.80 0.00 0.00 5.73
136 137 2.106511 AGATACAATGATTGACCGGGGG 59.893 50.000 12.80 0.00 0.00 5.40
137 138 1.585895 TACAATGATTGACCGGGGGA 58.414 50.000 12.80 0.00 0.00 4.81
138 139 0.255890 ACAATGATTGACCGGGGGAG 59.744 55.000 12.80 0.00 0.00 4.30
139 140 0.546122 CAATGATTGACCGGGGGAGA 59.454 55.000 6.32 0.00 0.00 3.71
140 141 0.546598 AATGATTGACCGGGGGAGAC 59.453 55.000 6.32 0.00 0.00 3.36
141 142 0.620410 ATGATTGACCGGGGGAGACA 60.620 55.000 6.32 0.00 0.00 3.41
142 143 0.838554 TGATTGACCGGGGGAGACAA 60.839 55.000 6.32 2.73 0.00 3.18
143 144 0.392595 GATTGACCGGGGGAGACAAC 60.393 60.000 6.32 0.00 0.00 3.32
144 145 1.131303 ATTGACCGGGGGAGACAACA 61.131 55.000 6.32 0.00 0.00 3.33
145 146 1.131303 TTGACCGGGGGAGACAACAT 61.131 55.000 6.32 0.00 0.00 2.71
146 147 1.131303 TGACCGGGGGAGACAACATT 61.131 55.000 6.32 0.00 0.00 2.71
147 148 0.037734 GACCGGGGGAGACAACATTT 59.962 55.000 6.32 0.00 0.00 2.32
148 149 1.279846 GACCGGGGGAGACAACATTTA 59.720 52.381 6.32 0.00 0.00 1.40
149 150 1.920351 ACCGGGGGAGACAACATTTAT 59.080 47.619 6.32 0.00 0.00 1.40
150 151 2.310647 ACCGGGGGAGACAACATTTATT 59.689 45.455 6.32 0.00 0.00 1.40
151 152 2.949644 CCGGGGGAGACAACATTTATTC 59.050 50.000 0.00 0.00 0.00 1.75
152 153 3.616219 CGGGGGAGACAACATTTATTCA 58.384 45.455 0.00 0.00 0.00 2.57
153 154 3.627577 CGGGGGAGACAACATTTATTCAG 59.372 47.826 0.00 0.00 0.00 3.02
154 155 3.954258 GGGGGAGACAACATTTATTCAGG 59.046 47.826 0.00 0.00 0.00 3.86
155 156 4.569865 GGGGGAGACAACATTTATTCAGGT 60.570 45.833 0.00 0.00 0.00 4.00
156 157 4.399303 GGGGAGACAACATTTATTCAGGTG 59.601 45.833 0.00 0.00 0.00 4.00
157 158 5.010282 GGGAGACAACATTTATTCAGGTGT 58.990 41.667 0.00 0.00 0.00 4.16
158 159 5.476945 GGGAGACAACATTTATTCAGGTGTT 59.523 40.000 0.00 0.00 35.34 3.32
159 160 6.015434 GGGAGACAACATTTATTCAGGTGTTT 60.015 38.462 0.00 0.00 32.87 2.83
160 161 7.433680 GGAGACAACATTTATTCAGGTGTTTT 58.566 34.615 0.00 0.00 32.87 2.43
161 162 7.595130 GGAGACAACATTTATTCAGGTGTTTTC 59.405 37.037 0.00 0.00 32.87 2.29
162 163 8.237811 AGACAACATTTATTCAGGTGTTTTCT 57.762 30.769 0.00 0.00 37.00 2.52
163 164 9.349713 AGACAACATTTATTCAGGTGTTTTCTA 57.650 29.630 4.50 0.00 38.87 2.10
168 169 9.308000 ACATTTATTCAGGTGTTTTCTATTCCA 57.692 29.630 0.00 0.00 0.00 3.53
169 170 9.573133 CATTTATTCAGGTGTTTTCTATTCCAC 57.427 33.333 0.00 0.00 0.00 4.02
170 171 8.934023 TTTATTCAGGTGTTTTCTATTCCACT 57.066 30.769 0.00 0.00 0.00 4.00
171 172 8.934023 TTATTCAGGTGTTTTCTATTCCACTT 57.066 30.769 0.00 0.00 0.00 3.16
172 173 6.633500 TTCAGGTGTTTTCTATTCCACTTG 57.367 37.500 0.00 0.00 36.56 3.16
173 174 5.070001 TCAGGTGTTTTCTATTCCACTTGG 58.930 41.667 0.00 0.00 36.09 3.61
174 175 4.827284 CAGGTGTTTTCTATTCCACTTGGT 59.173 41.667 0.00 0.00 32.97 3.67
175 176 4.827284 AGGTGTTTTCTATTCCACTTGGTG 59.173 41.667 0.00 0.00 36.34 4.17
184 185 2.723746 CACTTGGTGGTGCACTGC 59.276 61.111 17.98 9.63 34.40 4.40
185 186 2.901840 ACTTGGTGGTGCACTGCG 60.902 61.111 17.98 2.45 34.40 5.18
186 187 2.901840 CTTGGTGGTGCACTGCGT 60.902 61.111 17.98 0.00 34.40 5.24
187 188 3.185082 CTTGGTGGTGCACTGCGTG 62.185 63.158 17.98 4.61 34.40 5.34
188 189 3.986072 TTGGTGGTGCACTGCGTGT 62.986 57.895 17.98 0.00 35.75 4.49
198 199 1.640428 CACTGCGTGTGTATACAGGG 58.360 55.000 5.62 0.00 41.68 4.45
199 200 0.108329 ACTGCGTGTGTATACAGGGC 60.108 55.000 5.62 10.41 41.68 5.19
200 201 0.108377 CTGCGTGTGTATACAGGGCA 60.108 55.000 18.79 18.79 42.04 5.36
201 202 0.321996 TGCGTGTGTATACAGGGCAA 59.678 50.000 18.05 6.78 41.62 4.52
202 203 1.270893 TGCGTGTGTATACAGGGCAAA 60.271 47.619 18.05 2.27 41.62 3.68
203 204 1.396996 GCGTGTGTATACAGGGCAAAG 59.603 52.381 5.62 0.85 41.68 2.77
204 205 2.006888 CGTGTGTATACAGGGCAAAGG 58.993 52.381 5.62 0.00 38.64 3.11
205 206 1.743394 GTGTGTATACAGGGCAAAGGC 59.257 52.381 5.62 0.00 37.52 4.35
206 207 1.352687 TGTGTATACAGGGCAAAGGCA 59.647 47.619 5.62 0.00 35.37 4.75
207 208 2.017049 GTGTATACAGGGCAAAGGCAG 58.983 52.381 5.62 0.00 43.71 4.85
208 209 1.064758 TGTATACAGGGCAAAGGCAGG 60.065 52.381 0.08 0.00 43.71 4.85
209 210 0.550914 TATACAGGGCAAAGGCAGGG 59.449 55.000 0.00 0.00 43.71 4.45
210 211 2.228841 ATACAGGGCAAAGGCAGGGG 62.229 60.000 0.00 0.00 43.71 4.79
222 223 4.841441 CAGGGGCCTAACTGCAAA 57.159 55.556 0.84 0.00 0.00 3.68
223 224 3.050089 CAGGGGCCTAACTGCAAAA 57.950 52.632 0.84 0.00 0.00 2.44
224 225 1.560505 CAGGGGCCTAACTGCAAAAT 58.439 50.000 0.84 0.00 0.00 1.82
225 226 1.205417 CAGGGGCCTAACTGCAAAATG 59.795 52.381 0.84 0.00 0.00 2.32
226 227 0.108186 GGGGCCTAACTGCAAAATGC 60.108 55.000 0.84 0.00 45.29 3.56
254 255 2.588027 GACTAGCTAGTCCACTTGGC 57.412 55.000 34.56 14.45 45.33 4.52
255 256 1.825474 GACTAGCTAGTCCACTTGGCA 59.175 52.381 34.56 0.00 45.33 4.92
256 257 2.432510 GACTAGCTAGTCCACTTGGCAT 59.567 50.000 34.56 7.17 45.33 4.40
257 258 2.432510 ACTAGCTAGTCCACTTGGCATC 59.567 50.000 20.95 0.00 34.44 3.91
258 259 0.543749 AGCTAGTCCACTTGGCATCC 59.456 55.000 0.00 0.00 34.44 3.51
259 260 0.253044 GCTAGTCCACTTGGCATCCA 59.747 55.000 0.00 0.00 34.44 3.41
260 261 2.014068 GCTAGTCCACTTGGCATCCAC 61.014 57.143 0.00 0.00 30.78 4.02
261 262 1.556911 CTAGTCCACTTGGCATCCACT 59.443 52.381 0.00 0.00 30.78 4.00
262 263 1.656587 AGTCCACTTGGCATCCACTA 58.343 50.000 0.00 0.00 30.78 2.74
263 264 1.556911 AGTCCACTTGGCATCCACTAG 59.443 52.381 0.00 0.00 30.78 2.57
264 265 0.911769 TCCACTTGGCATCCACTAGG 59.088 55.000 0.00 0.00 30.78 3.02
265 266 0.749454 CCACTTGGCATCCACTAGGC 60.749 60.000 0.00 0.00 30.78 3.93
266 267 1.091771 CACTTGGCATCCACTAGGCG 61.092 60.000 0.00 0.00 35.10 5.52
267 268 1.264749 ACTTGGCATCCACTAGGCGA 61.265 55.000 0.00 0.00 35.10 5.54
268 269 0.531532 CTTGGCATCCACTAGGCGAG 60.532 60.000 0.00 0.00 35.10 5.03
269 270 2.280457 GGCATCCACTAGGCGAGC 60.280 66.667 0.00 0.00 35.10 5.03
270 271 2.801631 GGCATCCACTAGGCGAGCT 61.802 63.158 0.00 0.00 35.10 4.09
271 272 1.593750 GCATCCACTAGGCGAGCTG 60.594 63.158 0.00 0.00 33.74 4.24
272 273 1.819229 CATCCACTAGGCGAGCTGT 59.181 57.895 0.00 0.00 33.74 4.40
273 274 0.529337 CATCCACTAGGCGAGCTGTG 60.529 60.000 0.00 0.00 33.74 3.66
274 275 0.684479 ATCCACTAGGCGAGCTGTGA 60.684 55.000 0.00 0.00 32.72 3.58
275 276 0.684479 TCCACTAGGCGAGCTGTGAT 60.684 55.000 0.00 0.00 32.72 3.06
276 277 0.176680 CCACTAGGCGAGCTGTGATT 59.823 55.000 0.00 0.00 32.72 2.57
277 278 1.284657 CACTAGGCGAGCTGTGATTG 58.715 55.000 0.00 0.00 32.72 2.67
278 279 0.176680 ACTAGGCGAGCTGTGATTGG 59.823 55.000 0.00 0.00 0.00 3.16
279 280 1.153369 TAGGCGAGCTGTGATTGGC 60.153 57.895 0.00 0.00 0.00 4.52
280 281 2.593468 TAGGCGAGCTGTGATTGGCC 62.593 60.000 0.00 0.00 40.80 5.36
281 282 3.869272 GCGAGCTGTGATTGGCCG 61.869 66.667 0.00 0.00 0.00 6.13
282 283 2.125552 CGAGCTGTGATTGGCCGA 60.126 61.111 0.00 0.00 0.00 5.54
283 284 2.169789 CGAGCTGTGATTGGCCGAG 61.170 63.158 0.00 0.00 0.00 4.63
284 285 1.817099 GAGCTGTGATTGGCCGAGG 60.817 63.158 0.00 0.00 0.00 4.63
285 286 2.244117 GAGCTGTGATTGGCCGAGGA 62.244 60.000 0.00 0.00 0.00 3.71
286 287 2.109126 GCTGTGATTGGCCGAGGAC 61.109 63.158 0.00 0.00 0.00 3.85
287 288 1.599047 CTGTGATTGGCCGAGGACT 59.401 57.895 0.00 0.00 0.00 3.85
288 289 0.824109 CTGTGATTGGCCGAGGACTA 59.176 55.000 0.00 0.00 0.00 2.59
289 290 1.207089 CTGTGATTGGCCGAGGACTAA 59.793 52.381 0.00 0.00 0.00 2.24
290 291 1.626321 TGTGATTGGCCGAGGACTAAA 59.374 47.619 0.00 0.00 0.00 1.85
291 292 2.007608 GTGATTGGCCGAGGACTAAAC 58.992 52.381 0.00 0.00 0.00 2.01
292 293 1.906574 TGATTGGCCGAGGACTAAACT 59.093 47.619 0.00 0.00 0.00 2.66
293 294 2.304761 TGATTGGCCGAGGACTAAACTT 59.695 45.455 0.00 0.00 0.00 2.66
294 295 2.178912 TTGGCCGAGGACTAAACTTG 57.821 50.000 0.00 0.00 0.00 3.16
295 296 0.321298 TGGCCGAGGACTAAACTTGC 60.321 55.000 0.00 0.00 0.00 4.01
296 297 0.321298 GGCCGAGGACTAAACTTGCA 60.321 55.000 0.00 0.00 0.00 4.08
297 298 0.796927 GCCGAGGACTAAACTTGCAC 59.203 55.000 0.00 0.00 0.00 4.57
298 299 1.439679 CCGAGGACTAAACTTGCACC 58.560 55.000 0.00 0.00 0.00 5.01
299 300 1.002087 CCGAGGACTAAACTTGCACCT 59.998 52.381 0.00 0.00 0.00 4.00
300 301 2.338500 CGAGGACTAAACTTGCACCTC 58.662 52.381 5.81 5.81 40.03 3.85
301 302 2.701107 GAGGACTAAACTTGCACCTCC 58.299 52.381 4.75 0.00 38.23 4.30
302 303 2.038557 GAGGACTAAACTTGCACCTCCA 59.961 50.000 4.75 0.00 38.23 3.86
303 304 2.644798 AGGACTAAACTTGCACCTCCAT 59.355 45.455 0.00 0.00 0.00 3.41
304 305 2.749621 GGACTAAACTTGCACCTCCATG 59.250 50.000 0.00 0.00 0.00 3.66
305 306 3.559171 GGACTAAACTTGCACCTCCATGA 60.559 47.826 0.00 0.00 0.00 3.07
306 307 3.412386 ACTAAACTTGCACCTCCATGAC 58.588 45.455 0.00 0.00 0.00 3.06
307 308 2.363306 AAACTTGCACCTCCATGACA 57.637 45.000 0.00 0.00 0.00 3.58
308 309 2.363306 AACTTGCACCTCCATGACAA 57.637 45.000 0.00 0.00 0.00 3.18
309 310 1.901591 ACTTGCACCTCCATGACAAG 58.098 50.000 0.00 0.00 38.54 3.16
310 311 1.143684 ACTTGCACCTCCATGACAAGT 59.856 47.619 0.00 0.00 39.72 3.16
311 312 2.233271 CTTGCACCTCCATGACAAGTT 58.767 47.619 0.00 0.00 33.12 2.66
312 313 2.363306 TGCACCTCCATGACAAGTTT 57.637 45.000 0.00 0.00 0.00 2.66
313 314 3.500448 TGCACCTCCATGACAAGTTTA 57.500 42.857 0.00 0.00 0.00 2.01
314 315 3.411446 TGCACCTCCATGACAAGTTTAG 58.589 45.455 0.00 0.00 0.00 1.85
315 316 2.749621 GCACCTCCATGACAAGTTTAGG 59.250 50.000 0.00 0.00 0.00 2.69
316 317 3.347216 CACCTCCATGACAAGTTTAGGG 58.653 50.000 0.00 0.00 0.00 3.53
317 318 3.009033 CACCTCCATGACAAGTTTAGGGA 59.991 47.826 0.00 0.00 0.00 4.20
318 319 3.009143 ACCTCCATGACAAGTTTAGGGAC 59.991 47.826 0.00 0.00 0.00 4.46
319 320 3.262420 CTCCATGACAAGTTTAGGGACG 58.738 50.000 0.00 0.00 0.00 4.79
320 321 2.901192 TCCATGACAAGTTTAGGGACGA 59.099 45.455 0.00 0.00 0.00 4.20
321 322 3.325425 TCCATGACAAGTTTAGGGACGAA 59.675 43.478 0.00 0.00 0.00 3.85
322 323 4.069304 CCATGACAAGTTTAGGGACGAAA 58.931 43.478 0.00 0.00 0.00 3.46
323 324 4.700213 CCATGACAAGTTTAGGGACGAAAT 59.300 41.667 0.00 0.00 35.06 2.17
324 325 5.878116 CCATGACAAGTTTAGGGACGAAATA 59.122 40.000 0.00 0.00 35.06 1.40
325 326 6.373216 CCATGACAAGTTTAGGGACGAAATAA 59.627 38.462 0.00 0.00 35.06 1.40
326 327 7.067008 CCATGACAAGTTTAGGGACGAAATAAT 59.933 37.037 0.00 0.00 35.06 1.28
327 328 7.989416 TGACAAGTTTAGGGACGAAATAATT 57.011 32.000 0.00 0.00 35.06 1.40
328 329 8.036273 TGACAAGTTTAGGGACGAAATAATTC 57.964 34.615 0.00 0.00 35.06 2.17
329 330 7.662258 TGACAAGTTTAGGGACGAAATAATTCA 59.338 33.333 0.00 0.00 35.06 2.57
330 331 7.813645 ACAAGTTTAGGGACGAAATAATTCAC 58.186 34.615 0.00 0.00 35.06 3.18
331 332 7.664318 ACAAGTTTAGGGACGAAATAATTCACT 59.336 33.333 0.00 0.00 35.06 3.41
332 333 8.512138 CAAGTTTAGGGACGAAATAATTCACTT 58.488 33.333 0.00 0.00 35.06 3.16
333 334 8.631480 AGTTTAGGGACGAAATAATTCACTTT 57.369 30.769 0.00 0.00 35.06 2.66
334 335 9.074576 AGTTTAGGGACGAAATAATTCACTTTT 57.925 29.630 0.00 0.00 35.06 2.27
335 336 9.124807 GTTTAGGGACGAAATAATTCACTTTTG 57.875 33.333 0.00 0.00 35.06 2.44
336 337 5.709966 AGGGACGAAATAATTCACTTTTGC 58.290 37.500 0.00 0.00 35.15 3.68
337 338 5.242838 AGGGACGAAATAATTCACTTTTGCA 59.757 36.000 0.00 0.00 35.15 4.08
338 339 5.923684 GGGACGAAATAATTCACTTTTGCAA 59.076 36.000 0.00 0.00 35.15 4.08
339 340 6.089417 GGGACGAAATAATTCACTTTTGCAAG 59.911 38.462 0.00 0.00 35.15 4.01
340 341 6.640907 GGACGAAATAATTCACTTTTGCAAGT 59.359 34.615 0.00 0.00 44.72 3.16
341 342 7.806014 GGACGAAATAATTCACTTTTGCAAGTA 59.194 33.333 0.00 0.00 41.69 2.24
342 343 9.176181 GACGAAATAATTCACTTTTGCAAGTAA 57.824 29.630 0.00 0.00 41.69 2.24
343 344 9.522804 ACGAAATAATTCACTTTTGCAAGTAAA 57.477 25.926 0.00 0.00 41.69 2.01
348 349 7.770801 AATTCACTTTTGCAAGTAAAAGGAC 57.229 32.000 21.60 0.00 46.72 3.85
349 350 6.524101 TTCACTTTTGCAAGTAAAAGGACT 57.476 33.333 21.60 4.43 46.72 3.85
350 351 7.633193 TTCACTTTTGCAAGTAAAAGGACTA 57.367 32.000 21.60 6.69 46.72 2.59
351 352 7.633193 TCACTTTTGCAAGTAAAAGGACTAA 57.367 32.000 21.60 5.39 46.72 2.24
352 353 8.057536 TCACTTTTGCAAGTAAAAGGACTAAA 57.942 30.769 21.60 4.09 46.72 1.85
353 354 7.971722 TCACTTTTGCAAGTAAAAGGACTAAAC 59.028 33.333 21.60 0.00 46.72 2.01
354 355 7.222031 CACTTTTGCAAGTAAAAGGACTAAACC 59.778 37.037 21.60 0.00 46.72 3.27
355 356 6.777213 TTTGCAAGTAAAAGGACTAAACCA 57.223 33.333 0.00 0.00 0.00 3.67
356 357 6.969993 TTGCAAGTAAAAGGACTAAACCAT 57.030 33.333 0.00 0.00 0.00 3.55
357 358 6.569179 TGCAAGTAAAAGGACTAAACCATC 57.431 37.500 0.00 0.00 0.00 3.51
358 359 6.065374 TGCAAGTAAAAGGACTAAACCATCA 58.935 36.000 0.00 0.00 0.00 3.07
359 360 6.016610 TGCAAGTAAAAGGACTAAACCATCAC 60.017 38.462 0.00 0.00 0.00 3.06
360 361 6.016610 GCAAGTAAAAGGACTAAACCATCACA 60.017 38.462 0.00 0.00 0.00 3.58
361 362 7.309194 GCAAGTAAAAGGACTAAACCATCACAT 60.309 37.037 0.00 0.00 0.00 3.21
362 363 7.687941 AGTAAAAGGACTAAACCATCACATG 57.312 36.000 0.00 0.00 0.00 3.21
363 364 5.391312 AAAAGGACTAAACCATCACATGC 57.609 39.130 0.00 0.00 0.00 4.06
364 365 4.307032 AAGGACTAAACCATCACATGCT 57.693 40.909 0.00 0.00 0.00 3.79
365 366 3.614092 AGGACTAAACCATCACATGCTG 58.386 45.455 0.00 0.00 0.00 4.41
366 367 3.009473 AGGACTAAACCATCACATGCTGT 59.991 43.478 0.00 0.00 0.00 4.40
378 379 4.282950 CACATGCTGTGCAAGTATAAGG 57.717 45.455 0.15 0.00 43.62 2.69
379 380 3.940852 CACATGCTGTGCAAGTATAAGGA 59.059 43.478 0.15 0.00 43.62 3.36
380 381 3.941483 ACATGCTGTGCAAGTATAAGGAC 59.059 43.478 0.00 0.00 43.62 3.85
381 382 2.985896 TGCTGTGCAAGTATAAGGACC 58.014 47.619 0.00 0.00 34.76 4.46
382 383 2.571653 TGCTGTGCAAGTATAAGGACCT 59.428 45.455 0.00 0.00 34.76 3.85
383 384 2.939103 GCTGTGCAAGTATAAGGACCTG 59.061 50.000 0.00 0.00 0.00 4.00
384 385 3.535561 CTGTGCAAGTATAAGGACCTGG 58.464 50.000 0.00 0.00 0.00 4.45
385 386 2.238646 TGTGCAAGTATAAGGACCTGGG 59.761 50.000 0.00 0.00 0.00 4.45
386 387 2.504175 GTGCAAGTATAAGGACCTGGGA 59.496 50.000 0.00 0.00 0.00 4.37
387 388 3.136626 GTGCAAGTATAAGGACCTGGGAT 59.863 47.826 0.00 0.00 0.00 3.85
388 389 3.136443 TGCAAGTATAAGGACCTGGGATG 59.864 47.826 0.00 0.00 0.00 3.51
389 390 3.136626 GCAAGTATAAGGACCTGGGATGT 59.863 47.826 0.00 0.00 0.00 3.06
390 391 4.385310 GCAAGTATAAGGACCTGGGATGTT 60.385 45.833 0.00 0.00 0.00 2.71
391 392 5.163237 GCAAGTATAAGGACCTGGGATGTTA 60.163 44.000 0.00 0.00 0.00 2.41
392 393 6.465894 GCAAGTATAAGGACCTGGGATGTTAT 60.466 42.308 0.00 0.00 0.00 1.89
393 394 7.518188 CAAGTATAAGGACCTGGGATGTTATT 58.482 38.462 0.00 0.00 0.00 1.40
394 395 8.656806 CAAGTATAAGGACCTGGGATGTTATTA 58.343 37.037 0.00 0.00 0.00 0.98
395 396 8.203681 AGTATAAGGACCTGGGATGTTATTAC 57.796 38.462 0.00 0.00 0.00 1.89
396 397 4.790718 AAGGACCTGGGATGTTATTACC 57.209 45.455 0.00 0.00 0.00 2.85
397 398 4.022359 AGGACCTGGGATGTTATTACCT 57.978 45.455 0.00 0.00 0.00 3.08
398 399 3.974642 AGGACCTGGGATGTTATTACCTC 59.025 47.826 0.00 0.00 0.00 3.85
399 400 3.244112 GGACCTGGGATGTTATTACCTCG 60.244 52.174 0.00 0.00 0.00 4.63
400 401 3.381335 ACCTGGGATGTTATTACCTCGT 58.619 45.455 0.00 0.00 0.00 4.18
401 402 3.778629 ACCTGGGATGTTATTACCTCGTT 59.221 43.478 0.00 0.00 0.00 3.85
402 403 4.226620 ACCTGGGATGTTATTACCTCGTTT 59.773 41.667 0.00 0.00 0.00 3.60
403 404 5.426185 ACCTGGGATGTTATTACCTCGTTTA 59.574 40.000 0.00 0.00 0.00 2.01
404 405 6.070078 ACCTGGGATGTTATTACCTCGTTTAA 60.070 38.462 0.00 0.00 0.00 1.52
405 406 6.824704 CCTGGGATGTTATTACCTCGTTTAAA 59.175 38.462 0.00 0.00 0.00 1.52
406 407 7.337436 CCTGGGATGTTATTACCTCGTTTAAAA 59.663 37.037 0.00 0.00 0.00 1.52
407 408 8.810990 TGGGATGTTATTACCTCGTTTAAAAT 57.189 30.769 0.00 0.00 0.00 1.82
408 409 9.902684 TGGGATGTTATTACCTCGTTTAAAATA 57.097 29.630 0.00 0.00 0.00 1.40
417 418 5.744490 ACCTCGTTTAAAATATATGCGTGC 58.256 37.500 0.00 0.00 0.00 5.34
418 419 5.294799 ACCTCGTTTAAAATATATGCGTGCA 59.705 36.000 0.00 0.00 0.00 4.57
419 420 6.183360 ACCTCGTTTAAAATATATGCGTGCAA 60.183 34.615 0.00 0.00 0.00 4.08
420 421 6.140108 CCTCGTTTAAAATATATGCGTGCAAC 59.860 38.462 0.00 0.00 0.00 4.17
438 439 3.633951 GTTGGTTGACGACGTCCC 58.366 61.111 24.33 18.89 0.00 4.46
439 440 2.027897 TTGGTTGACGACGTCCCG 59.972 61.111 24.33 1.95 0.00 5.14
440 441 4.651008 TGGTTGACGACGTCCCGC 62.651 66.667 24.33 13.89 0.00 6.13
441 442 4.651008 GGTTGACGACGTCCCGCA 62.651 66.667 24.33 4.19 0.00 5.69
442 443 2.431942 GTTGACGACGTCCCGCAT 60.432 61.111 24.33 0.00 0.00 4.73
443 444 2.025418 GTTGACGACGTCCCGCATT 61.025 57.895 24.33 0.00 0.00 3.56
444 445 1.301087 TTGACGACGTCCCGCATTT 60.301 52.632 24.33 0.00 0.00 2.32
445 446 0.038435 TTGACGACGTCCCGCATTTA 60.038 50.000 24.33 0.77 0.00 1.40
446 447 0.173935 TGACGACGTCCCGCATTTAT 59.826 50.000 24.33 0.00 0.00 1.40
447 448 1.404748 TGACGACGTCCCGCATTTATA 59.595 47.619 24.33 0.00 0.00 0.98
448 449 2.034939 TGACGACGTCCCGCATTTATAT 59.965 45.455 24.33 0.00 0.00 0.86
449 450 3.054878 GACGACGTCCCGCATTTATATT 58.945 45.455 17.25 0.00 0.00 1.28
450 451 3.054878 ACGACGTCCCGCATTTATATTC 58.945 45.455 10.58 0.00 0.00 1.75
451 452 3.054166 CGACGTCCCGCATTTATATTCA 58.946 45.455 10.58 0.00 0.00 2.57
452 453 3.678072 CGACGTCCCGCATTTATATTCAT 59.322 43.478 10.58 0.00 0.00 2.57
453 454 4.434198 CGACGTCCCGCATTTATATTCATG 60.434 45.833 10.58 0.00 0.00 3.07
454 455 3.751175 ACGTCCCGCATTTATATTCATGG 59.249 43.478 0.00 0.00 0.00 3.66
455 456 4.000325 CGTCCCGCATTTATATTCATGGA 59.000 43.478 0.00 0.00 0.00 3.41
456 457 4.142902 CGTCCCGCATTTATATTCATGGAC 60.143 45.833 0.00 0.00 37.09 4.02
457 458 5.003804 GTCCCGCATTTATATTCATGGACT 58.996 41.667 0.00 0.00 37.39 3.85
458 459 5.003160 TCCCGCATTTATATTCATGGACTG 58.997 41.667 0.00 0.00 0.00 3.51
459 460 4.156556 CCCGCATTTATATTCATGGACTGG 59.843 45.833 0.00 0.00 0.00 4.00
460 461 4.761739 CCGCATTTATATTCATGGACTGGT 59.238 41.667 0.00 0.00 0.00 4.00
461 462 5.106555 CCGCATTTATATTCATGGACTGGTC 60.107 44.000 0.00 0.00 0.00 4.02
471 472 2.026915 CATGGACTGGTCCTGTTCATGA 60.027 50.000 32.36 6.30 45.81 3.07
472 473 2.859165 GGACTGGTCCTGTTCATGAA 57.141 50.000 3.38 3.38 46.16 2.57
473 474 2.704572 GGACTGGTCCTGTTCATGAAG 58.295 52.381 8.80 0.00 46.16 3.02
474 475 2.616510 GGACTGGTCCTGTTCATGAAGG 60.617 54.545 8.80 7.82 46.16 3.46
475 476 1.352352 ACTGGTCCTGTTCATGAAGGG 59.648 52.381 8.80 13.96 34.08 3.95
476 477 1.630369 CTGGTCCTGTTCATGAAGGGA 59.370 52.381 20.08 20.08 34.08 4.20
477 478 2.240667 CTGGTCCTGTTCATGAAGGGAT 59.759 50.000 24.22 0.00 34.08 3.85
478 479 2.025981 TGGTCCTGTTCATGAAGGGATG 60.026 50.000 24.22 8.16 34.08 3.51
479 480 2.019984 GTCCTGTTCATGAAGGGATGC 58.980 52.381 24.22 13.97 34.08 3.91
480 481 1.019673 CCTGTTCATGAAGGGATGCG 58.980 55.000 17.78 0.36 0.00 4.73
481 482 1.407299 CCTGTTCATGAAGGGATGCGA 60.407 52.381 17.78 0.00 0.00 5.10
482 483 1.938577 CTGTTCATGAAGGGATGCGAG 59.061 52.381 8.80 0.00 0.00 5.03
483 484 1.554617 TGTTCATGAAGGGATGCGAGA 59.445 47.619 8.80 0.00 0.00 4.04
484 485 2.027285 TGTTCATGAAGGGATGCGAGAA 60.027 45.455 8.80 0.00 0.00 2.87
485 486 2.609427 TCATGAAGGGATGCGAGAAG 57.391 50.000 0.00 0.00 0.00 2.85
486 487 2.110578 TCATGAAGGGATGCGAGAAGA 58.889 47.619 0.00 0.00 0.00 2.87
487 488 2.501316 TCATGAAGGGATGCGAGAAGAA 59.499 45.455 0.00 0.00 0.00 2.52
488 489 3.055167 TCATGAAGGGATGCGAGAAGAAA 60.055 43.478 0.00 0.00 0.00 2.52
489 490 3.634397 TGAAGGGATGCGAGAAGAAAT 57.366 42.857 0.00 0.00 0.00 2.17
490 491 3.955471 TGAAGGGATGCGAGAAGAAATT 58.045 40.909 0.00 0.00 0.00 1.82
491 492 4.335416 TGAAGGGATGCGAGAAGAAATTT 58.665 39.130 0.00 0.00 0.00 1.82
492 493 5.496556 TGAAGGGATGCGAGAAGAAATTTA 58.503 37.500 0.00 0.00 0.00 1.40
493 494 5.354234 TGAAGGGATGCGAGAAGAAATTTAC 59.646 40.000 0.00 0.00 0.00 2.01
494 495 3.871594 AGGGATGCGAGAAGAAATTTACG 59.128 43.478 0.00 0.00 0.00 3.18
495 496 3.621715 GGGATGCGAGAAGAAATTTACGT 59.378 43.478 0.00 0.00 0.00 3.57
496 497 4.807304 GGGATGCGAGAAGAAATTTACGTA 59.193 41.667 0.00 0.00 0.00 3.57
497 498 5.276726 GGGATGCGAGAAGAAATTTACGTAC 60.277 44.000 0.00 0.00 0.00 3.67
498 499 5.276726 GGATGCGAGAAGAAATTTACGTACC 60.277 44.000 0.00 0.00 0.00 3.34
499 500 3.609373 TGCGAGAAGAAATTTACGTACCG 59.391 43.478 0.00 0.00 0.00 4.02
500 501 3.540937 GCGAGAAGAAATTTACGTACCGC 60.541 47.826 0.00 0.00 0.00 5.68
501 502 3.000376 CGAGAAGAAATTTACGTACCGCC 60.000 47.826 0.00 0.00 0.00 6.13
502 503 3.264947 AGAAGAAATTTACGTACCGCCC 58.735 45.455 0.00 0.00 0.00 6.13
503 504 3.055602 AGAAGAAATTTACGTACCGCCCT 60.056 43.478 0.00 0.00 0.00 5.19
504 505 3.339253 AGAAATTTACGTACCGCCCTT 57.661 42.857 0.00 0.00 0.00 3.95
505 506 3.004862 AGAAATTTACGTACCGCCCTTG 58.995 45.455 0.00 0.00 0.00 3.61
506 507 2.766345 AATTTACGTACCGCCCTTGA 57.234 45.000 0.00 0.00 0.00 3.02
507 508 2.766345 ATTTACGTACCGCCCTTGAA 57.234 45.000 0.00 0.00 0.00 2.69
508 509 2.083167 TTTACGTACCGCCCTTGAAG 57.917 50.000 0.00 0.00 0.00 3.02
509 510 1.255882 TTACGTACCGCCCTTGAAGA 58.744 50.000 0.00 0.00 0.00 2.87
510 511 1.477553 TACGTACCGCCCTTGAAGAT 58.522 50.000 0.00 0.00 0.00 2.40
511 512 0.108329 ACGTACCGCCCTTGAAGATG 60.108 55.000 0.00 0.00 0.00 2.90
512 513 1.429148 CGTACCGCCCTTGAAGATGC 61.429 60.000 0.00 0.00 0.00 3.91
513 514 1.095807 GTACCGCCCTTGAAGATGCC 61.096 60.000 0.00 0.00 0.00 4.40
514 515 1.271840 TACCGCCCTTGAAGATGCCT 61.272 55.000 0.00 0.00 0.00 4.75
515 516 1.379044 CCGCCCTTGAAGATGCCTT 60.379 57.895 0.00 0.00 34.81 4.35
516 517 1.660560 CCGCCCTTGAAGATGCCTTG 61.661 60.000 0.00 0.00 31.62 3.61
517 518 0.677731 CGCCCTTGAAGATGCCTTGA 60.678 55.000 0.00 0.00 31.62 3.02
518 519 1.549203 GCCCTTGAAGATGCCTTGAA 58.451 50.000 0.00 0.00 31.62 2.69
519 520 2.105766 GCCCTTGAAGATGCCTTGAAT 58.894 47.619 0.00 0.00 31.62 2.57
520 521 2.498885 GCCCTTGAAGATGCCTTGAATT 59.501 45.455 0.00 0.00 31.62 2.17
521 522 3.677976 GCCCTTGAAGATGCCTTGAATTG 60.678 47.826 0.00 0.00 31.62 2.32
522 523 3.118884 CCCTTGAAGATGCCTTGAATTGG 60.119 47.826 0.00 0.00 31.62 3.16
523 524 3.512724 CCTTGAAGATGCCTTGAATTGGT 59.487 43.478 0.00 0.00 31.62 3.67
524 525 4.020839 CCTTGAAGATGCCTTGAATTGGTT 60.021 41.667 0.00 0.00 31.62 3.67
525 526 4.524316 TGAAGATGCCTTGAATTGGTTG 57.476 40.909 0.00 0.00 31.62 3.77
526 527 3.256558 GAAGATGCCTTGAATTGGTTGC 58.743 45.455 0.00 0.00 31.62 4.17
527 528 1.203052 AGATGCCTTGAATTGGTTGCG 59.797 47.619 0.00 0.00 0.00 4.85
528 529 0.247185 ATGCCTTGAATTGGTTGCGG 59.753 50.000 0.00 0.00 0.00 5.69
529 530 0.825425 TGCCTTGAATTGGTTGCGGA 60.825 50.000 0.00 0.00 0.00 5.54
530 531 0.388520 GCCTTGAATTGGTTGCGGAC 60.389 55.000 0.00 0.00 0.00 4.79
531 532 0.958091 CCTTGAATTGGTTGCGGACA 59.042 50.000 0.00 0.00 0.00 4.02
532 533 1.335872 CCTTGAATTGGTTGCGGACAC 60.336 52.381 0.00 0.00 0.00 3.67
533 534 1.336440 CTTGAATTGGTTGCGGACACA 59.664 47.619 0.00 0.00 0.00 3.72
534 535 1.393603 TGAATTGGTTGCGGACACAA 58.606 45.000 0.00 0.00 0.00 3.33
535 536 1.751351 TGAATTGGTTGCGGACACAAA 59.249 42.857 0.00 0.00 0.00 2.83
536 537 2.124122 GAATTGGTTGCGGACACAAAC 58.876 47.619 0.00 0.00 37.76 2.93
537 538 0.030101 ATTGGTTGCGGACACAAACG 59.970 50.000 0.00 0.00 40.24 3.60
538 539 1.994507 TTGGTTGCGGACACAAACGG 61.995 55.000 0.00 0.00 40.24 4.44
539 540 2.181521 GGTTGCGGACACAAACGGA 61.182 57.895 0.00 0.00 0.00 4.69
540 541 1.512156 GGTTGCGGACACAAACGGAT 61.512 55.000 0.00 0.00 0.00 4.18
541 542 0.385473 GTTGCGGACACAAACGGATG 60.385 55.000 0.00 0.00 0.00 3.51
542 543 2.123988 TTGCGGACACAAACGGATGC 62.124 55.000 0.00 0.00 0.00 3.91
543 544 2.325082 GCGGACACAAACGGATGCT 61.325 57.895 0.00 0.00 0.00 3.79
544 545 1.787847 CGGACACAAACGGATGCTC 59.212 57.895 0.00 0.00 0.00 4.26
545 546 0.670546 CGGACACAAACGGATGCTCT 60.671 55.000 0.00 0.00 0.00 4.09
546 547 0.798776 GGACACAAACGGATGCTCTG 59.201 55.000 0.00 0.00 0.00 3.35
547 548 1.512926 GACACAAACGGATGCTCTGT 58.487 50.000 0.00 0.00 37.65 3.41
548 549 1.195448 GACACAAACGGATGCTCTGTG 59.805 52.381 8.11 8.11 42.43 3.66
549 550 0.110056 CACAAACGGATGCTCTGTGC 60.110 55.000 0.00 0.00 35.86 4.57
559 560 3.083213 GCTCTGTGCAAAGCTTTCG 57.917 52.632 9.23 6.50 42.31 3.46
560 561 1.000736 GCTCTGTGCAAAGCTTTCGC 61.001 55.000 20.06 20.06 42.31 4.70
561 562 0.308684 CTCTGTGCAAAGCTTTCGCA 59.691 50.000 23.52 23.52 39.10 5.10
562 563 0.953727 TCTGTGCAAAGCTTTCGCAT 59.046 45.000 27.31 1.15 38.07 4.73
563 564 1.057636 CTGTGCAAAGCTTTCGCATG 58.942 50.000 27.31 21.38 38.07 4.06
564 565 0.318869 TGTGCAAAGCTTTCGCATGG 60.319 50.000 27.31 11.96 38.07 3.66
565 566 1.010419 GTGCAAAGCTTTCGCATGGG 61.010 55.000 27.31 11.37 38.07 4.00
566 567 1.446618 GCAAAGCTTTCGCATGGGG 60.447 57.895 21.23 6.63 39.10 4.96
567 568 1.966762 CAAAGCTTTCGCATGGGGT 59.033 52.632 9.23 0.00 39.10 4.95
568 569 0.318120 CAAAGCTTTCGCATGGGGTT 59.682 50.000 9.23 0.00 39.10 4.11
569 570 1.047801 AAAGCTTTCGCATGGGGTTT 58.952 45.000 5.69 0.00 39.10 3.27
570 571 0.603065 AAGCTTTCGCATGGGGTTTC 59.397 50.000 10.21 0.00 39.10 2.78
571 572 1.215382 GCTTTCGCATGGGGTTTCC 59.785 57.895 10.21 0.00 35.78 3.13
572 573 1.506262 CTTTCGCATGGGGTTTCCG 59.494 57.895 10.21 0.00 38.76 4.30
573 574 1.228306 TTTCGCATGGGGTTTCCGT 60.228 52.632 10.21 0.00 38.76 4.69
574 575 0.824182 TTTCGCATGGGGTTTCCGTT 60.824 50.000 10.21 0.00 38.76 4.44
575 576 1.519751 TTCGCATGGGGTTTCCGTTG 61.520 55.000 10.21 0.00 38.76 4.10
576 577 2.261361 GCATGGGGTTTCCGTTGC 59.739 61.111 0.00 0.00 39.16 4.17
577 578 2.969827 CATGGGGTTTCCGTTGCC 59.030 61.111 0.00 0.00 38.76 4.52
578 579 1.905843 CATGGGGTTTCCGTTGCCA 60.906 57.895 0.00 0.00 38.76 4.92
579 580 1.078347 ATGGGGTTTCCGTTGCCAT 59.922 52.632 0.00 0.00 38.76 4.40
580 581 1.257055 ATGGGGTTTCCGTTGCCATG 61.257 55.000 0.00 0.00 38.76 3.66
581 582 2.645192 GGGGTTTCCGTTGCCATGG 61.645 63.158 7.63 7.63 0.00 3.66
582 583 2.261361 GGTTTCCGTTGCCATGGC 59.739 61.111 30.54 30.54 42.35 4.40
583 584 2.126502 GTTTCCGTTGCCATGGCG 60.127 61.111 30.87 17.14 45.51 5.69
584 585 3.369400 TTTCCGTTGCCATGGCGG 61.369 61.111 30.87 25.08 45.51 6.13
593 594 2.739784 CCATGGCGGCAAACCAAA 59.260 55.556 18.31 0.00 41.49 3.28
594 595 1.070445 CCATGGCGGCAAACCAAAA 59.930 52.632 18.31 0.00 41.49 2.44
595 596 0.950071 CCATGGCGGCAAACCAAAAG 60.950 55.000 18.31 0.00 41.49 2.27
596 597 0.033228 CATGGCGGCAAACCAAAAGA 59.967 50.000 18.31 0.00 41.49 2.52
597 598 0.755686 ATGGCGGCAAACCAAAAGAA 59.244 45.000 18.31 0.00 41.49 2.52
598 599 0.537188 TGGCGGCAAACCAAAAGAAA 59.463 45.000 10.22 0.00 33.12 2.52
599 600 1.066143 TGGCGGCAAACCAAAAGAAAA 60.066 42.857 10.22 0.00 33.12 2.29
600 601 2.010497 GGCGGCAAACCAAAAGAAAAA 58.990 42.857 3.07 0.00 34.57 1.94
601 602 2.223157 GGCGGCAAACCAAAAGAAAAAC 60.223 45.455 3.07 0.00 34.57 2.43
602 603 2.416893 GCGGCAAACCAAAAGAAAAACA 59.583 40.909 0.00 0.00 34.57 2.83
603 604 3.485051 GCGGCAAACCAAAAGAAAAACAG 60.485 43.478 0.00 0.00 34.57 3.16
604 605 3.063316 CGGCAAACCAAAAGAAAAACAGG 59.937 43.478 0.00 0.00 34.57 4.00
605 606 3.376859 GGCAAACCAAAAGAAAAACAGGG 59.623 43.478 0.00 0.00 35.26 4.45
606 607 4.257731 GCAAACCAAAAGAAAAACAGGGA 58.742 39.130 0.00 0.00 0.00 4.20
607 608 4.697828 GCAAACCAAAAGAAAAACAGGGAA 59.302 37.500 0.00 0.00 0.00 3.97
608 609 5.182190 GCAAACCAAAAGAAAAACAGGGAAA 59.818 36.000 0.00 0.00 0.00 3.13
609 610 6.607689 CAAACCAAAAGAAAAACAGGGAAAC 58.392 36.000 0.00 0.00 0.00 2.78
610 611 4.500127 ACCAAAAGAAAAACAGGGAAACG 58.500 39.130 0.00 0.00 0.00 3.60
648 649 7.030768 TCAAAAAGTAAAAAGAACAGGGAACG 58.969 34.615 0.00 0.00 0.00 3.95
653 654 7.812690 AGTAAAAAGAACAGGGAACGTTTAT 57.187 32.000 0.46 0.00 0.00 1.40
654 655 8.907222 AGTAAAAAGAACAGGGAACGTTTATA 57.093 30.769 0.46 0.00 0.00 0.98
655 656 8.777413 AGTAAAAAGAACAGGGAACGTTTATAC 58.223 33.333 0.46 0.00 0.00 1.47
656 657 7.812690 AAAAAGAACAGGGAACGTTTATACT 57.187 32.000 0.46 0.00 0.00 2.12
779 1406 2.048127 GTGTCACACCTCCGAGCC 60.048 66.667 0.00 0.00 0.00 4.70
824 1451 6.072728 CCGTCATGAGATGTTTTCTTAAACCA 60.073 38.462 0.00 0.00 42.39 3.67
1092 1730 3.119096 GCCACGGCCGAGAAGAAC 61.119 66.667 35.90 9.75 34.56 3.01
1103 1744 4.495422 GCCGAGAAGAACAAGAAGATACA 58.505 43.478 0.00 0.00 0.00 2.29
1827 2498 3.814842 TCGTCATGCTGAACAATTCAACT 59.185 39.130 0.00 0.00 39.58 3.16
1828 2499 4.275689 TCGTCATGCTGAACAATTCAACTT 59.724 37.500 0.00 0.00 39.58 2.66
1829 2500 4.614284 CGTCATGCTGAACAATTCAACTTC 59.386 41.667 0.00 0.00 39.58 3.01
1830 2501 5.522456 GTCATGCTGAACAATTCAACTTCA 58.478 37.500 0.00 0.00 39.58 3.02
2039 2710 2.672996 GCACTGGCGTCCATGGTT 60.673 61.111 12.58 0.00 30.82 3.67
2645 3324 3.520862 CCCAGCGGCAAATGCGAT 61.521 61.111 1.45 0.00 43.26 4.58
2683 3626 2.519541 TGGCGAGATCGAGGGAGG 60.520 66.667 6.39 0.00 43.02 4.30
2866 3813 0.447801 GCAAATCACTCCGAACGCAT 59.552 50.000 0.00 0.00 0.00 4.73
2868 3815 2.668279 GCAAATCACTCCGAACGCATTT 60.668 45.455 0.00 0.00 0.00 2.32
2891 3838 2.356913 CGTCCATCGTGGTGCACA 60.357 61.111 20.43 1.62 39.03 4.57
2898 3845 3.570125 TCCATCGTGGTGCACAAATTTTA 59.430 39.130 20.43 0.00 39.03 1.52
3000 3947 3.243234 CGCACGTCTCTCTCCTTATTCAT 60.243 47.826 0.00 0.00 0.00 2.57
3124 4075 2.478890 GCTCTAGGACGGCGCACTA 61.479 63.158 10.83 8.98 0.00 2.74
3239 4190 3.544607 ATCATCGAGGCTGGCGCT 61.545 61.111 7.64 0.00 36.09 5.92
3388 4736 2.374839 TCCATGGTCACTGTTGGATTGA 59.625 45.455 12.58 0.00 33.40 2.57
3437 4787 1.933247 CGGTCCTCTGCATCTTCTTC 58.067 55.000 0.00 0.00 0.00 2.87
3639 5010 2.234896 ATTGATGTGCCATGACCCAA 57.765 45.000 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.226717 GACATCGTCGGAGCTCACC 60.227 63.158 17.19 0.00 0.00 4.02
9 10 4.386245 GACATCGTCGGAGCTCAC 57.614 61.111 17.19 4.99 0.00 3.51
28 29 1.742880 CTGACGTCAGCCACCATGG 60.743 63.158 31.00 11.19 41.55 3.66
29 30 3.880591 CTGACGTCAGCCACCATG 58.119 61.111 31.00 7.70 37.15 3.66
51 52 3.683966 CTGGAGGCTGAGCTGGCTG 62.684 68.421 3.72 0.00 43.09 4.85
52 53 3.400928 CTGGAGGCTGAGCTGGCT 61.401 66.667 3.72 0.00 45.80 4.75
54 55 4.834453 CGCTGGAGGCTGAGCTGG 62.834 72.222 3.72 0.00 39.13 4.85
55 56 4.834453 CCGCTGGAGGCTGAGCTG 62.834 72.222 3.72 3.48 39.13 4.24
72 73 3.730761 CACCGTTGGAGCTGCTGC 61.731 66.667 14.73 14.73 40.05 5.25
81 82 2.690653 TTTGCCTCTCCCACCGTTGG 62.691 60.000 0.00 0.00 43.50 3.77
82 83 1.228124 TTTGCCTCTCCCACCGTTG 60.228 57.895 0.00 0.00 0.00 4.10
83 84 1.073199 CTTTGCCTCTCCCACCGTT 59.927 57.895 0.00 0.00 0.00 4.44
84 85 1.841556 TCTTTGCCTCTCCCACCGT 60.842 57.895 0.00 0.00 0.00 4.83
85 86 1.376037 GTCTTTGCCTCTCCCACCG 60.376 63.158 0.00 0.00 0.00 4.94
86 87 1.376037 CGTCTTTGCCTCTCCCACC 60.376 63.158 0.00 0.00 0.00 4.61
87 88 0.390472 CTCGTCTTTGCCTCTCCCAC 60.390 60.000 0.00 0.00 0.00 4.61
88 89 1.544825 CCTCGTCTTTGCCTCTCCCA 61.545 60.000 0.00 0.00 0.00 4.37
89 90 1.219393 CCTCGTCTTTGCCTCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
90 91 1.219393 CCCTCGTCTTTGCCTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
91 92 0.608640 TTCCCTCGTCTTTGCCTCTC 59.391 55.000 0.00 0.00 0.00 3.20
92 93 0.321996 GTTCCCTCGTCTTTGCCTCT 59.678 55.000 0.00 0.00 0.00 3.69
93 94 0.034896 TGTTCCCTCGTCTTTGCCTC 59.965 55.000 0.00 0.00 0.00 4.70
94 95 0.035458 CTGTTCCCTCGTCTTTGCCT 59.965 55.000 0.00 0.00 0.00 4.75
95 96 0.955919 CCTGTTCCCTCGTCTTTGCC 60.956 60.000 0.00 0.00 0.00 4.52
96 97 0.034896 TCCTGTTCCCTCGTCTTTGC 59.965 55.000 0.00 0.00 0.00 3.68
97 98 1.618837 TCTCCTGTTCCCTCGTCTTTG 59.381 52.381 0.00 0.00 0.00 2.77
98 99 2.011122 TCTCCTGTTCCCTCGTCTTT 57.989 50.000 0.00 0.00 0.00 2.52
99 100 2.239681 ATCTCCTGTTCCCTCGTCTT 57.760 50.000 0.00 0.00 0.00 3.01
100 101 2.025226 TGTATCTCCTGTTCCCTCGTCT 60.025 50.000 0.00 0.00 0.00 4.18
101 102 2.376109 TGTATCTCCTGTTCCCTCGTC 58.624 52.381 0.00 0.00 0.00 4.20
102 103 2.526888 TGTATCTCCTGTTCCCTCGT 57.473 50.000 0.00 0.00 0.00 4.18
103 104 3.384789 TCATTGTATCTCCTGTTCCCTCG 59.615 47.826 0.00 0.00 0.00 4.63
104 105 5.559148 ATCATTGTATCTCCTGTTCCCTC 57.441 43.478 0.00 0.00 0.00 4.30
105 106 5.429762 TCAATCATTGTATCTCCTGTTCCCT 59.570 40.000 0.00 0.00 0.00 4.20
106 107 5.529060 GTCAATCATTGTATCTCCTGTTCCC 59.471 44.000 0.00 0.00 0.00 3.97
107 108 5.529060 GGTCAATCATTGTATCTCCTGTTCC 59.471 44.000 0.00 0.00 0.00 3.62
108 109 5.235186 CGGTCAATCATTGTATCTCCTGTTC 59.765 44.000 0.00 0.00 0.00 3.18
109 110 5.118990 CGGTCAATCATTGTATCTCCTGTT 58.881 41.667 0.00 0.00 0.00 3.16
110 111 4.443457 CCGGTCAATCATTGTATCTCCTGT 60.443 45.833 0.00 0.00 0.00 4.00
111 112 4.060900 CCGGTCAATCATTGTATCTCCTG 58.939 47.826 0.00 0.00 0.00 3.86
112 113 3.071602 CCCGGTCAATCATTGTATCTCCT 59.928 47.826 0.00 0.00 0.00 3.69
113 114 3.403038 CCCGGTCAATCATTGTATCTCC 58.597 50.000 0.00 0.00 0.00 3.71
114 115 3.403038 CCCCGGTCAATCATTGTATCTC 58.597 50.000 0.00 0.00 0.00 2.75
115 116 2.106511 CCCCCGGTCAATCATTGTATCT 59.893 50.000 0.00 0.00 0.00 1.98
116 117 2.105821 TCCCCCGGTCAATCATTGTATC 59.894 50.000 0.00 0.00 0.00 2.24
117 118 2.106511 CTCCCCCGGTCAATCATTGTAT 59.893 50.000 0.00 0.00 0.00 2.29
118 119 1.488812 CTCCCCCGGTCAATCATTGTA 59.511 52.381 0.00 0.00 0.00 2.41
119 120 0.255890 CTCCCCCGGTCAATCATTGT 59.744 55.000 0.00 0.00 0.00 2.71
120 121 0.546122 TCTCCCCCGGTCAATCATTG 59.454 55.000 0.00 0.00 0.00 2.82
121 122 0.546598 GTCTCCCCCGGTCAATCATT 59.453 55.000 0.00 0.00 0.00 2.57
122 123 0.620410 TGTCTCCCCCGGTCAATCAT 60.620 55.000 0.00 0.00 0.00 2.45
123 124 0.838554 TTGTCTCCCCCGGTCAATCA 60.839 55.000 0.00 0.00 0.00 2.57
124 125 0.392595 GTTGTCTCCCCCGGTCAATC 60.393 60.000 0.00 0.00 0.00 2.67
125 126 1.131303 TGTTGTCTCCCCCGGTCAAT 61.131 55.000 0.00 0.00 0.00 2.57
126 127 1.131303 ATGTTGTCTCCCCCGGTCAA 61.131 55.000 0.00 0.00 0.00 3.18
127 128 1.131303 AATGTTGTCTCCCCCGGTCA 61.131 55.000 0.00 0.00 0.00 4.02
128 129 0.037734 AAATGTTGTCTCCCCCGGTC 59.962 55.000 0.00 0.00 0.00 4.79
129 130 1.364269 TAAATGTTGTCTCCCCCGGT 58.636 50.000 0.00 0.00 0.00 5.28
130 131 2.729028 ATAAATGTTGTCTCCCCCGG 57.271 50.000 0.00 0.00 0.00 5.73
131 132 3.616219 TGAATAAATGTTGTCTCCCCCG 58.384 45.455 0.00 0.00 0.00 5.73
132 133 3.954258 CCTGAATAAATGTTGTCTCCCCC 59.046 47.826 0.00 0.00 0.00 5.40
133 134 4.399303 CACCTGAATAAATGTTGTCTCCCC 59.601 45.833 0.00 0.00 0.00 4.81
134 135 5.010282 ACACCTGAATAAATGTTGTCTCCC 58.990 41.667 0.00 0.00 0.00 4.30
135 136 6.575162 AACACCTGAATAAATGTTGTCTCC 57.425 37.500 0.00 0.00 34.08 3.71
136 137 8.352942 AGAAAACACCTGAATAAATGTTGTCTC 58.647 33.333 3.36 0.00 43.16 3.36
137 138 8.237811 AGAAAACACCTGAATAAATGTTGTCT 57.762 30.769 3.36 3.36 42.31 3.41
142 143 9.308000 TGGAATAGAAAACACCTGAATAAATGT 57.692 29.630 0.00 0.00 0.00 2.71
143 144 9.573133 GTGGAATAGAAAACACCTGAATAAATG 57.427 33.333 0.00 0.00 0.00 2.32
144 145 9.533831 AGTGGAATAGAAAACACCTGAATAAAT 57.466 29.630 0.00 0.00 34.50 1.40
145 146 8.934023 AGTGGAATAGAAAACACCTGAATAAA 57.066 30.769 0.00 0.00 34.50 1.40
146 147 8.792633 CAAGTGGAATAGAAAACACCTGAATAA 58.207 33.333 0.00 0.00 34.50 1.40
147 148 7.393234 CCAAGTGGAATAGAAAACACCTGAATA 59.607 37.037 0.00 0.00 37.39 1.75
148 149 6.209391 CCAAGTGGAATAGAAAACACCTGAAT 59.791 38.462 0.00 0.00 37.39 2.57
149 150 5.534654 CCAAGTGGAATAGAAAACACCTGAA 59.465 40.000 0.00 0.00 37.39 3.02
150 151 5.070001 CCAAGTGGAATAGAAAACACCTGA 58.930 41.667 0.00 0.00 37.39 3.86
151 152 4.827284 ACCAAGTGGAATAGAAAACACCTG 59.173 41.667 3.83 0.00 38.94 4.00
152 153 4.827284 CACCAAGTGGAATAGAAAACACCT 59.173 41.667 3.83 0.00 38.94 4.00
153 154 5.121221 CACCAAGTGGAATAGAAAACACC 57.879 43.478 3.83 0.00 38.94 4.16
167 168 2.723746 GCAGTGCACCACCAAGTG 59.276 61.111 14.63 4.27 40.88 3.16
168 169 2.901840 CGCAGTGCACCACCAAGT 60.902 61.111 16.83 0.00 34.49 3.16
169 170 2.901840 ACGCAGTGCACCACCAAG 60.902 61.111 16.83 2.00 42.51 3.61
181 182 0.108377 TGCCCTGTATACACACGCAG 60.108 55.000 0.08 0.00 32.51 5.18
182 183 0.321996 TTGCCCTGTATACACACGCA 59.678 50.000 0.08 7.03 34.56 5.24
183 184 1.396996 CTTTGCCCTGTATACACACGC 59.603 52.381 0.08 4.44 0.00 5.34
184 185 2.006888 CCTTTGCCCTGTATACACACG 58.993 52.381 0.08 0.00 0.00 4.49
185 186 1.743394 GCCTTTGCCCTGTATACACAC 59.257 52.381 0.08 0.00 0.00 3.82
186 187 1.352687 TGCCTTTGCCCTGTATACACA 59.647 47.619 0.08 0.00 36.33 3.72
187 188 2.017049 CTGCCTTTGCCCTGTATACAC 58.983 52.381 0.08 0.00 36.33 2.90
188 189 1.064758 CCTGCCTTTGCCCTGTATACA 60.065 52.381 5.25 5.25 36.33 2.29
189 190 1.680338 CCTGCCTTTGCCCTGTATAC 58.320 55.000 0.00 0.00 36.33 1.47
190 191 0.550914 CCCTGCCTTTGCCCTGTATA 59.449 55.000 0.00 0.00 36.33 1.47
191 192 1.307647 CCCTGCCTTTGCCCTGTAT 59.692 57.895 0.00 0.00 36.33 2.29
192 193 2.763215 CCCTGCCTTTGCCCTGTA 59.237 61.111 0.00 0.00 36.33 2.74
193 194 4.305956 CCCCTGCCTTTGCCCTGT 62.306 66.667 0.00 0.00 36.33 4.00
205 206 1.205417 CATTTTGCAGTTAGGCCCCTG 59.795 52.381 0.00 4.51 0.00 4.45
206 207 1.560505 CATTTTGCAGTTAGGCCCCT 58.439 50.000 0.00 0.00 0.00 4.79
207 208 0.108186 GCATTTTGCAGTTAGGCCCC 60.108 55.000 0.00 0.00 44.26 5.80
208 209 0.458370 CGCATTTTGCAGTTAGGCCC 60.458 55.000 0.00 0.00 45.36 5.80
209 210 0.458370 CCGCATTTTGCAGTTAGGCC 60.458 55.000 0.00 0.00 45.36 5.19
210 211 1.078201 GCCGCATTTTGCAGTTAGGC 61.078 55.000 0.00 4.68 45.36 3.93
211 212 0.798009 CGCCGCATTTTGCAGTTAGG 60.798 55.000 0.00 0.00 45.36 2.69
212 213 1.405469 GCGCCGCATTTTGCAGTTAG 61.405 55.000 3.15 0.00 45.36 2.34
213 214 1.443533 GCGCCGCATTTTGCAGTTA 60.444 52.632 3.15 0.00 45.36 2.24
214 215 2.734346 GCGCCGCATTTTGCAGTT 60.734 55.556 3.15 0.00 45.36 3.16
236 237 1.938585 TGCCAAGTGGACTAGCTAGT 58.061 50.000 26.35 26.35 39.71 2.57
237 238 2.224161 GGATGCCAAGTGGACTAGCTAG 60.224 54.545 19.44 19.44 37.39 3.42
238 239 1.762957 GGATGCCAAGTGGACTAGCTA 59.237 52.381 0.18 0.00 37.39 3.32
239 240 0.543749 GGATGCCAAGTGGACTAGCT 59.456 55.000 0.18 0.00 37.39 3.32
240 241 0.253044 TGGATGCCAAGTGGACTAGC 59.747 55.000 0.18 0.00 37.39 3.42
241 242 1.556911 AGTGGATGCCAAGTGGACTAG 59.443 52.381 0.18 0.00 34.18 2.57
242 243 1.656587 AGTGGATGCCAAGTGGACTA 58.343 50.000 0.18 0.00 34.18 2.59
243 244 1.556911 CTAGTGGATGCCAAGTGGACT 59.443 52.381 0.18 0.00 34.18 3.85
244 245 1.407437 CCTAGTGGATGCCAAGTGGAC 60.407 57.143 0.18 0.00 34.18 4.02
245 246 0.911769 CCTAGTGGATGCCAAGTGGA 59.088 55.000 0.18 0.00 34.18 4.02
246 247 0.749454 GCCTAGTGGATGCCAAGTGG 60.749 60.000 0.00 0.00 34.18 4.00
247 248 1.091771 CGCCTAGTGGATGCCAAGTG 61.092 60.000 0.00 0.00 34.18 3.16
248 249 1.221840 CGCCTAGTGGATGCCAAGT 59.778 57.895 0.00 0.00 34.18 3.16
249 250 0.531532 CTCGCCTAGTGGATGCCAAG 60.532 60.000 0.00 0.00 34.18 3.61
250 251 1.522092 CTCGCCTAGTGGATGCCAA 59.478 57.895 0.00 0.00 34.18 4.52
251 252 3.094062 GCTCGCCTAGTGGATGCCA 62.094 63.158 0.00 0.00 34.57 4.92
252 253 2.280457 GCTCGCCTAGTGGATGCC 60.280 66.667 0.00 0.00 34.57 4.40
253 254 1.593750 CAGCTCGCCTAGTGGATGC 60.594 63.158 0.00 0.00 34.57 3.91
254 255 0.529337 CACAGCTCGCCTAGTGGATG 60.529 60.000 0.00 0.00 34.57 3.51
255 256 0.684479 TCACAGCTCGCCTAGTGGAT 60.684 55.000 0.34 0.00 34.57 3.41
256 257 0.684479 ATCACAGCTCGCCTAGTGGA 60.684 55.000 0.34 0.00 34.57 4.02
257 258 0.176680 AATCACAGCTCGCCTAGTGG 59.823 55.000 0.34 0.00 33.01 4.00
258 259 1.284657 CAATCACAGCTCGCCTAGTG 58.715 55.000 0.00 0.00 0.00 2.74
259 260 0.176680 CCAATCACAGCTCGCCTAGT 59.823 55.000 0.00 0.00 0.00 2.57
260 261 1.156645 GCCAATCACAGCTCGCCTAG 61.157 60.000 0.00 0.00 0.00 3.02
261 262 1.153369 GCCAATCACAGCTCGCCTA 60.153 57.895 0.00 0.00 0.00 3.93
262 263 2.437359 GCCAATCACAGCTCGCCT 60.437 61.111 0.00 0.00 0.00 5.52
263 264 3.512516 GGCCAATCACAGCTCGCC 61.513 66.667 0.00 0.00 0.00 5.54
264 265 3.869272 CGGCCAATCACAGCTCGC 61.869 66.667 2.24 0.00 0.00 5.03
265 266 2.125552 TCGGCCAATCACAGCTCG 60.126 61.111 2.24 0.00 0.00 5.03
266 267 1.817099 CCTCGGCCAATCACAGCTC 60.817 63.158 2.24 0.00 0.00 4.09
267 268 2.270205 CCTCGGCCAATCACAGCT 59.730 61.111 2.24 0.00 0.00 4.24
268 269 2.109126 GTCCTCGGCCAATCACAGC 61.109 63.158 2.24 0.00 0.00 4.40
269 270 0.824109 TAGTCCTCGGCCAATCACAG 59.176 55.000 2.24 0.00 0.00 3.66
270 271 1.271856 TTAGTCCTCGGCCAATCACA 58.728 50.000 2.24 0.00 0.00 3.58
271 272 2.007608 GTTTAGTCCTCGGCCAATCAC 58.992 52.381 2.24 0.00 0.00 3.06
272 273 1.906574 AGTTTAGTCCTCGGCCAATCA 59.093 47.619 2.24 0.00 0.00 2.57
273 274 2.678336 CAAGTTTAGTCCTCGGCCAATC 59.322 50.000 2.24 0.00 0.00 2.67
274 275 2.711542 CAAGTTTAGTCCTCGGCCAAT 58.288 47.619 2.24 0.00 0.00 3.16
275 276 1.880646 GCAAGTTTAGTCCTCGGCCAA 60.881 52.381 2.24 0.00 0.00 4.52
276 277 0.321298 GCAAGTTTAGTCCTCGGCCA 60.321 55.000 2.24 0.00 0.00 5.36
277 278 0.321298 TGCAAGTTTAGTCCTCGGCC 60.321 55.000 0.00 0.00 0.00 6.13
278 279 0.796927 GTGCAAGTTTAGTCCTCGGC 59.203 55.000 0.00 0.00 0.00 5.54
279 280 1.002087 AGGTGCAAGTTTAGTCCTCGG 59.998 52.381 0.00 0.00 0.00 4.63
280 281 2.338500 GAGGTGCAAGTTTAGTCCTCG 58.662 52.381 0.00 0.00 33.44 4.63
281 282 2.038557 TGGAGGTGCAAGTTTAGTCCTC 59.961 50.000 7.10 7.10 40.21 3.71
282 283 2.054799 TGGAGGTGCAAGTTTAGTCCT 58.945 47.619 0.00 0.00 0.00 3.85
283 284 2.561478 TGGAGGTGCAAGTTTAGTCC 57.439 50.000 0.00 0.00 0.00 3.85
284 285 3.437049 GTCATGGAGGTGCAAGTTTAGTC 59.563 47.826 0.00 0.00 0.00 2.59
285 286 3.181445 TGTCATGGAGGTGCAAGTTTAGT 60.181 43.478 0.00 0.00 0.00 2.24
286 287 3.411446 TGTCATGGAGGTGCAAGTTTAG 58.589 45.455 0.00 0.00 0.00 1.85
287 288 3.500448 TGTCATGGAGGTGCAAGTTTA 57.500 42.857 0.00 0.00 0.00 2.01
288 289 2.363306 TGTCATGGAGGTGCAAGTTT 57.637 45.000 0.00 0.00 0.00 2.66
289 290 2.233271 CTTGTCATGGAGGTGCAAGTT 58.767 47.619 0.00 0.00 33.03 2.66
290 291 1.143684 ACTTGTCATGGAGGTGCAAGT 59.856 47.619 0.00 0.00 39.41 3.16
291 292 1.901591 ACTTGTCATGGAGGTGCAAG 58.098 50.000 0.00 0.00 38.27 4.01
292 293 2.363306 AACTTGTCATGGAGGTGCAA 57.637 45.000 0.00 0.00 0.00 4.08
293 294 2.363306 AAACTTGTCATGGAGGTGCA 57.637 45.000 0.00 0.00 0.00 4.57
294 295 2.749621 CCTAAACTTGTCATGGAGGTGC 59.250 50.000 0.00 0.00 0.00 5.01
295 296 3.009033 TCCCTAAACTTGTCATGGAGGTG 59.991 47.826 0.00 0.00 0.00 4.00
296 297 3.009143 GTCCCTAAACTTGTCATGGAGGT 59.991 47.826 0.00 0.00 0.00 3.85
297 298 3.610911 GTCCCTAAACTTGTCATGGAGG 58.389 50.000 0.00 0.00 0.00 4.30
298 299 3.056107 TCGTCCCTAAACTTGTCATGGAG 60.056 47.826 0.00 0.00 0.00 3.86
299 300 2.901192 TCGTCCCTAAACTTGTCATGGA 59.099 45.455 0.00 0.00 0.00 3.41
300 301 3.328382 TCGTCCCTAAACTTGTCATGG 57.672 47.619 0.00 0.00 0.00 3.66
301 302 5.880054 ATTTCGTCCCTAAACTTGTCATG 57.120 39.130 0.00 0.00 0.00 3.07
302 303 8.575649 AATTATTTCGTCCCTAAACTTGTCAT 57.424 30.769 0.00 0.00 0.00 3.06
303 304 7.662258 TGAATTATTTCGTCCCTAAACTTGTCA 59.338 33.333 0.00 0.00 34.39 3.58
304 305 7.961283 GTGAATTATTTCGTCCCTAAACTTGTC 59.039 37.037 0.00 0.00 34.39 3.18
305 306 7.664318 AGTGAATTATTTCGTCCCTAAACTTGT 59.336 33.333 0.00 0.00 34.39 3.16
306 307 8.040716 AGTGAATTATTTCGTCCCTAAACTTG 57.959 34.615 0.00 0.00 34.39 3.16
307 308 8.631480 AAGTGAATTATTTCGTCCCTAAACTT 57.369 30.769 0.00 0.00 34.39 2.66
308 309 8.631480 AAAGTGAATTATTTCGTCCCTAAACT 57.369 30.769 0.00 0.00 34.39 2.66
309 310 9.124807 CAAAAGTGAATTATTTCGTCCCTAAAC 57.875 33.333 0.00 0.00 34.39 2.01
310 311 7.810759 GCAAAAGTGAATTATTTCGTCCCTAAA 59.189 33.333 0.00 0.00 34.39 1.85
311 312 7.040340 TGCAAAAGTGAATTATTTCGTCCCTAA 60.040 33.333 0.00 0.00 34.39 2.69
312 313 6.431543 TGCAAAAGTGAATTATTTCGTCCCTA 59.568 34.615 0.00 0.00 34.39 3.53
313 314 5.242838 TGCAAAAGTGAATTATTTCGTCCCT 59.757 36.000 0.00 0.00 34.39 4.20
314 315 5.465935 TGCAAAAGTGAATTATTTCGTCCC 58.534 37.500 0.00 0.00 34.39 4.46
315 316 6.640907 ACTTGCAAAAGTGAATTATTTCGTCC 59.359 34.615 0.00 0.00 34.39 4.79
316 317 7.623268 ACTTGCAAAAGTGAATTATTTCGTC 57.377 32.000 0.00 0.00 34.39 4.20
317 318 9.522804 TTTACTTGCAAAAGTGAATTATTTCGT 57.477 25.926 0.00 0.00 34.39 3.85
322 323 9.476202 GTCCTTTTACTTGCAAAAGTGAATTAT 57.524 29.630 0.00 0.00 41.78 1.28
323 324 8.691797 AGTCCTTTTACTTGCAAAAGTGAATTA 58.308 29.630 0.00 0.00 41.78 1.40
324 325 7.555965 AGTCCTTTTACTTGCAAAAGTGAATT 58.444 30.769 0.00 0.00 41.78 2.17
325 326 7.112452 AGTCCTTTTACTTGCAAAAGTGAAT 57.888 32.000 0.00 0.00 41.78 2.57
326 327 6.524101 AGTCCTTTTACTTGCAAAAGTGAA 57.476 33.333 0.00 0.00 41.78 3.18
327 328 7.633193 TTAGTCCTTTTACTTGCAAAAGTGA 57.367 32.000 0.00 0.00 41.78 3.41
328 329 7.222031 GGTTTAGTCCTTTTACTTGCAAAAGTG 59.778 37.037 0.00 0.00 41.78 3.16
329 330 7.093684 TGGTTTAGTCCTTTTACTTGCAAAAGT 60.094 33.333 0.00 0.00 41.78 2.66
330 331 7.262048 TGGTTTAGTCCTTTTACTTGCAAAAG 58.738 34.615 0.00 0.73 42.59 2.27
331 332 7.171630 TGGTTTAGTCCTTTTACTTGCAAAA 57.828 32.000 0.00 0.00 0.00 2.44
332 333 6.777213 TGGTTTAGTCCTTTTACTTGCAAA 57.223 33.333 0.00 0.00 0.00 3.68
333 334 6.547880 TGATGGTTTAGTCCTTTTACTTGCAA 59.452 34.615 0.00 0.00 0.00 4.08
334 335 6.016610 GTGATGGTTTAGTCCTTTTACTTGCA 60.017 38.462 0.00 0.00 0.00 4.08
335 336 6.016610 TGTGATGGTTTAGTCCTTTTACTTGC 60.017 38.462 0.00 0.00 0.00 4.01
336 337 7.504924 TGTGATGGTTTAGTCCTTTTACTTG 57.495 36.000 0.00 0.00 0.00 3.16
337 338 7.309194 GCATGTGATGGTTTAGTCCTTTTACTT 60.309 37.037 0.00 0.00 0.00 2.24
338 339 6.151144 GCATGTGATGGTTTAGTCCTTTTACT 59.849 38.462 0.00 0.00 0.00 2.24
339 340 6.151144 AGCATGTGATGGTTTAGTCCTTTTAC 59.849 38.462 0.00 0.00 37.84 2.01
340 341 6.150976 CAGCATGTGATGGTTTAGTCCTTTTA 59.849 38.462 0.00 0.00 39.29 1.52
341 342 5.047802 CAGCATGTGATGGTTTAGTCCTTTT 60.048 40.000 0.00 0.00 39.29 2.27
342 343 4.460382 CAGCATGTGATGGTTTAGTCCTTT 59.540 41.667 0.00 0.00 39.29 3.11
343 344 4.012374 CAGCATGTGATGGTTTAGTCCTT 58.988 43.478 0.00 0.00 39.29 3.36
344 345 3.614092 CAGCATGTGATGGTTTAGTCCT 58.386 45.455 0.00 0.00 39.29 3.85
359 360 3.313526 GGTCCTTATACTTGCACAGCATG 59.686 47.826 3.68 3.68 46.00 4.06
360 361 3.200825 AGGTCCTTATACTTGCACAGCAT 59.799 43.478 0.00 0.00 38.76 3.79
361 362 2.571653 AGGTCCTTATACTTGCACAGCA 59.428 45.455 0.00 0.00 36.47 4.41
362 363 2.939103 CAGGTCCTTATACTTGCACAGC 59.061 50.000 0.00 0.00 0.00 4.40
363 364 3.535561 CCAGGTCCTTATACTTGCACAG 58.464 50.000 0.00 0.00 0.00 3.66
364 365 2.238646 CCCAGGTCCTTATACTTGCACA 59.761 50.000 0.00 0.00 0.00 4.57
365 366 2.504175 TCCCAGGTCCTTATACTTGCAC 59.496 50.000 0.00 0.00 0.00 4.57
366 367 2.840511 TCCCAGGTCCTTATACTTGCA 58.159 47.619 0.00 0.00 0.00 4.08
367 368 3.136626 ACATCCCAGGTCCTTATACTTGC 59.863 47.826 0.00 0.00 0.00 4.01
368 369 5.373812 AACATCCCAGGTCCTTATACTTG 57.626 43.478 0.00 0.00 0.00 3.16
369 370 7.707467 AATAACATCCCAGGTCCTTATACTT 57.293 36.000 0.00 0.00 0.00 2.24
370 371 7.237055 GGTAATAACATCCCAGGTCCTTATACT 59.763 40.741 0.00 0.00 0.00 2.12
371 372 7.237055 AGGTAATAACATCCCAGGTCCTTATAC 59.763 40.741 0.00 0.00 0.00 1.47
372 373 7.318401 AGGTAATAACATCCCAGGTCCTTATA 58.682 38.462 0.00 0.00 0.00 0.98
373 374 6.158260 AGGTAATAACATCCCAGGTCCTTAT 58.842 40.000 0.00 0.00 0.00 1.73
374 375 5.544682 AGGTAATAACATCCCAGGTCCTTA 58.455 41.667 0.00 0.00 0.00 2.69
375 376 4.380791 AGGTAATAACATCCCAGGTCCTT 58.619 43.478 0.00 0.00 0.00 3.36
376 377 3.974642 GAGGTAATAACATCCCAGGTCCT 59.025 47.826 0.00 0.00 30.09 3.85
377 378 3.244112 CGAGGTAATAACATCCCAGGTCC 60.244 52.174 0.00 0.00 32.76 4.46
378 379 3.387050 ACGAGGTAATAACATCCCAGGTC 59.613 47.826 0.00 0.00 32.76 3.85
379 380 3.381335 ACGAGGTAATAACATCCCAGGT 58.619 45.455 0.00 0.00 32.76 4.00
380 381 4.417426 AACGAGGTAATAACATCCCAGG 57.583 45.455 0.00 0.00 32.76 4.45
381 382 7.852971 TTTAAACGAGGTAATAACATCCCAG 57.147 36.000 0.00 0.00 32.76 4.45
382 383 8.810990 ATTTTAAACGAGGTAATAACATCCCA 57.189 30.769 0.00 0.00 32.76 4.37
391 392 8.013378 GCACGCATATATTTTAAACGAGGTAAT 58.987 33.333 0.00 0.00 0.00 1.89
392 393 7.011202 TGCACGCATATATTTTAAACGAGGTAA 59.989 33.333 0.00 0.00 0.00 2.85
393 394 6.479331 TGCACGCATATATTTTAAACGAGGTA 59.521 34.615 0.00 0.00 0.00 3.08
394 395 5.294799 TGCACGCATATATTTTAAACGAGGT 59.705 36.000 0.00 0.00 0.00 3.85
395 396 5.743467 TGCACGCATATATTTTAAACGAGG 58.257 37.500 0.00 0.00 0.00 4.63
396 397 6.130077 CGTTGCACGCATATATTTTAAACGAG 60.130 38.462 0.00 0.00 39.05 4.18
397 398 5.673286 CGTTGCACGCATATATTTTAAACGA 59.327 36.000 0.00 0.00 39.05 3.85
398 399 5.863835 CGTTGCACGCATATATTTTAAACG 58.136 37.500 0.00 0.00 33.65 3.60
416 417 2.027628 ACGTCGTCAACCAACGTTGC 62.028 55.000 22.93 7.74 46.56 4.17
417 418 2.000587 ACGTCGTCAACCAACGTTG 58.999 52.632 21.47 21.47 46.56 4.10
418 419 4.500396 ACGTCGTCAACCAACGTT 57.500 50.000 0.00 0.00 46.56 3.99
420 421 2.305127 GGGACGTCGTCAACCAACG 61.305 63.158 25.64 0.72 43.92 4.10
421 422 3.633951 GGGACGTCGTCAACCAAC 58.366 61.111 25.64 7.99 33.68 3.77
434 435 5.003804 AGTCCATGAATATAAATGCGGGAC 58.996 41.667 0.00 0.00 37.72 4.46
435 436 5.003160 CAGTCCATGAATATAAATGCGGGA 58.997 41.667 0.00 0.00 0.00 5.14
436 437 4.156556 CCAGTCCATGAATATAAATGCGGG 59.843 45.833 0.00 0.00 0.00 6.13
437 438 4.761739 ACCAGTCCATGAATATAAATGCGG 59.238 41.667 0.00 0.00 0.00 5.69
438 439 5.931532 GACCAGTCCATGAATATAAATGCG 58.068 41.667 0.00 0.00 0.00 4.73
454 455 2.616510 CCCTTCATGAACAGGACCAGTC 60.617 54.545 14.09 0.00 30.81 3.51
455 456 1.352352 CCCTTCATGAACAGGACCAGT 59.648 52.381 14.09 0.00 30.81 4.00
456 457 1.630369 TCCCTTCATGAACAGGACCAG 59.370 52.381 14.09 0.00 30.81 4.00
457 458 1.741028 TCCCTTCATGAACAGGACCA 58.259 50.000 14.09 0.00 30.81 4.02
458 459 2.648059 CATCCCTTCATGAACAGGACC 58.352 52.381 19.94 0.00 30.81 4.46
459 460 2.019984 GCATCCCTTCATGAACAGGAC 58.980 52.381 19.94 8.80 30.81 3.85
460 461 1.407299 CGCATCCCTTCATGAACAGGA 60.407 52.381 19.86 19.86 30.81 3.86
461 462 1.019673 CGCATCCCTTCATGAACAGG 58.980 55.000 3.38 8.67 0.00 4.00
462 463 1.938577 CTCGCATCCCTTCATGAACAG 59.061 52.381 3.38 0.00 0.00 3.16
463 464 1.554617 TCTCGCATCCCTTCATGAACA 59.445 47.619 3.38 0.00 0.00 3.18
464 465 2.315925 TCTCGCATCCCTTCATGAAC 57.684 50.000 3.38 0.00 0.00 3.18
465 466 2.501316 TCTTCTCGCATCCCTTCATGAA 59.499 45.455 8.12 8.12 0.00 2.57
466 467 2.110578 TCTTCTCGCATCCCTTCATGA 58.889 47.619 0.00 0.00 0.00 3.07
467 468 2.609427 TCTTCTCGCATCCCTTCATG 57.391 50.000 0.00 0.00 0.00 3.07
468 469 3.634397 TTTCTTCTCGCATCCCTTCAT 57.366 42.857 0.00 0.00 0.00 2.57
469 470 3.634397 ATTTCTTCTCGCATCCCTTCA 57.366 42.857 0.00 0.00 0.00 3.02
470 471 4.972514 AAATTTCTTCTCGCATCCCTTC 57.027 40.909 0.00 0.00 0.00 3.46
471 472 4.332819 CGTAAATTTCTTCTCGCATCCCTT 59.667 41.667 0.00 0.00 0.00 3.95
472 473 3.871594 CGTAAATTTCTTCTCGCATCCCT 59.128 43.478 0.00 0.00 0.00 4.20
473 474 3.621715 ACGTAAATTTCTTCTCGCATCCC 59.378 43.478 0.00 0.00 0.00 3.85
474 475 4.859629 ACGTAAATTTCTTCTCGCATCC 57.140 40.909 0.00 0.00 0.00 3.51
475 476 5.725241 GGTACGTAAATTTCTTCTCGCATC 58.275 41.667 0.00 0.00 0.00 3.91
476 477 5.713822 GGTACGTAAATTTCTTCTCGCAT 57.286 39.130 0.00 0.00 0.00 4.73
494 495 1.095807 GGCATCTTCAAGGGCGGTAC 61.096 60.000 0.00 0.00 0.00 3.34
495 496 1.223487 GGCATCTTCAAGGGCGGTA 59.777 57.895 0.00 0.00 0.00 4.02
496 497 2.044946 GGCATCTTCAAGGGCGGT 60.045 61.111 0.00 0.00 0.00 5.68
497 498 1.379044 AAGGCATCTTCAAGGGCGG 60.379 57.895 0.00 0.00 0.00 6.13
498 499 0.677731 TCAAGGCATCTTCAAGGGCG 60.678 55.000 0.00 0.00 0.00 6.13
499 500 1.549203 TTCAAGGCATCTTCAAGGGC 58.451 50.000 0.00 0.00 0.00 5.19
500 501 3.118884 CCAATTCAAGGCATCTTCAAGGG 60.119 47.826 0.00 0.00 0.00 3.95
501 502 3.512724 ACCAATTCAAGGCATCTTCAAGG 59.487 43.478 0.00 0.00 0.00 3.61
502 503 4.796038 ACCAATTCAAGGCATCTTCAAG 57.204 40.909 0.00 0.00 0.00 3.02
503 504 4.800249 GCAACCAATTCAAGGCATCTTCAA 60.800 41.667 0.00 0.00 0.00 2.69
504 505 3.306225 GCAACCAATTCAAGGCATCTTCA 60.306 43.478 0.00 0.00 0.00 3.02
505 506 3.256558 GCAACCAATTCAAGGCATCTTC 58.743 45.455 0.00 0.00 0.00 2.87
506 507 2.353011 CGCAACCAATTCAAGGCATCTT 60.353 45.455 0.00 0.00 0.00 2.40
507 508 1.203052 CGCAACCAATTCAAGGCATCT 59.797 47.619 0.00 0.00 0.00 2.90
508 509 1.632422 CGCAACCAATTCAAGGCATC 58.368 50.000 0.00 0.00 0.00 3.91
509 510 0.247185 CCGCAACCAATTCAAGGCAT 59.753 50.000 0.00 0.00 0.00 4.40
510 511 0.825425 TCCGCAACCAATTCAAGGCA 60.825 50.000 0.00 0.00 0.00 4.75
511 512 0.388520 GTCCGCAACCAATTCAAGGC 60.389 55.000 0.00 0.00 0.00 4.35
512 513 0.958091 TGTCCGCAACCAATTCAAGG 59.042 50.000 0.00 0.00 0.00 3.61
513 514 1.336440 TGTGTCCGCAACCAATTCAAG 59.664 47.619 0.00 0.00 0.00 3.02
514 515 1.393603 TGTGTCCGCAACCAATTCAA 58.606 45.000 0.00 0.00 0.00 2.69
515 516 1.393603 TTGTGTCCGCAACCAATTCA 58.606 45.000 0.00 0.00 0.00 2.57
516 517 2.124122 GTTTGTGTCCGCAACCAATTC 58.876 47.619 0.00 0.00 0.00 2.17
517 518 1.535015 CGTTTGTGTCCGCAACCAATT 60.535 47.619 0.00 0.00 0.00 2.32
518 519 0.030101 CGTTTGTGTCCGCAACCAAT 59.970 50.000 0.00 0.00 0.00 3.16
519 520 1.429825 CGTTTGTGTCCGCAACCAA 59.570 52.632 0.00 0.00 0.00 3.67
520 521 2.473760 CCGTTTGTGTCCGCAACCA 61.474 57.895 0.00 0.00 0.00 3.67
521 522 1.512156 ATCCGTTTGTGTCCGCAACC 61.512 55.000 0.00 0.00 0.00 3.77
522 523 0.385473 CATCCGTTTGTGTCCGCAAC 60.385 55.000 0.00 0.00 0.00 4.17
523 524 1.945522 CATCCGTTTGTGTCCGCAA 59.054 52.632 0.00 0.00 0.00 4.85
524 525 2.612567 GCATCCGTTTGTGTCCGCA 61.613 57.895 0.00 0.00 0.00 5.69
525 526 2.175811 GCATCCGTTTGTGTCCGC 59.824 61.111 0.00 0.00 0.00 5.54
526 527 0.670546 AGAGCATCCGTTTGTGTCCG 60.671 55.000 0.00 0.00 33.66 4.79
527 528 0.798776 CAGAGCATCCGTTTGTGTCC 59.201 55.000 0.00 0.00 33.66 4.02
528 529 1.195448 CACAGAGCATCCGTTTGTGTC 59.805 52.381 0.00 0.00 35.59 3.67
529 530 1.229428 CACAGAGCATCCGTTTGTGT 58.771 50.000 0.00 0.00 35.59 3.72
530 531 0.110056 GCACAGAGCATCCGTTTGTG 60.110 55.000 0.00 0.00 44.79 3.33
531 532 2.247790 GCACAGAGCATCCGTTTGT 58.752 52.632 0.00 0.00 44.79 2.83
541 542 3.083213 CGAAAGCTTTGCACAGAGC 57.917 52.632 18.30 5.92 45.96 4.09
550 551 4.241416 GGAAACCCCATGCGAAAGCTTT 62.241 50.000 12.53 12.53 46.90 3.51
551 552 2.769270 GGAAACCCCATGCGAAAGCTT 61.769 52.381 0.00 0.00 46.90 3.74
552 553 1.250840 GGAAACCCCATGCGAAAGCT 61.251 55.000 0.00 0.00 46.90 3.74
553 554 1.215382 GGAAACCCCATGCGAAAGC 59.785 57.895 0.00 0.00 46.94 3.51
554 555 1.241315 ACGGAAACCCCATGCGAAAG 61.241 55.000 0.00 0.00 35.47 2.62
555 556 0.824182 AACGGAAACCCCATGCGAAA 60.824 50.000 0.00 0.00 35.47 3.46
556 557 1.228306 AACGGAAACCCCATGCGAA 60.228 52.632 0.00 0.00 35.47 4.70
557 558 1.969064 CAACGGAAACCCCATGCGA 60.969 57.895 0.00 0.00 35.47 5.10
558 559 2.566010 CAACGGAAACCCCATGCG 59.434 61.111 0.00 0.00 37.66 4.73
559 560 2.261361 GCAACGGAAACCCCATGC 59.739 61.111 0.00 0.00 39.31 4.06
560 561 1.257055 ATGGCAACGGAAACCCCATG 61.257 55.000 0.00 0.00 42.51 3.66
561 562 1.078347 ATGGCAACGGAAACCCCAT 59.922 52.632 0.00 0.00 42.51 4.00
562 563 1.905843 CATGGCAACGGAAACCCCA 60.906 57.895 0.00 0.00 42.51 4.96
563 564 2.645192 CCATGGCAACGGAAACCCC 61.645 63.158 0.00 0.00 42.51 4.95
564 565 2.969827 CCATGGCAACGGAAACCC 59.030 61.111 0.00 0.00 42.51 4.11
565 566 2.261361 GCCATGGCAACGGAAACC 59.739 61.111 32.08 0.00 41.49 3.27
566 567 2.126502 CGCCATGGCAACGGAAAC 60.127 61.111 34.93 3.77 42.06 2.78
576 577 0.950071 CTTTTGGTTTGCCGCCATGG 60.950 55.000 7.63 7.63 42.50 3.66
577 578 0.033228 TCTTTTGGTTTGCCGCCATG 59.967 50.000 0.00 0.00 35.71 3.66
578 579 0.755686 TTCTTTTGGTTTGCCGCCAT 59.244 45.000 0.00 0.00 35.71 4.40
579 580 0.537188 TTTCTTTTGGTTTGCCGCCA 59.463 45.000 0.00 0.00 37.67 5.69
580 581 1.657822 TTTTCTTTTGGTTTGCCGCC 58.342 45.000 0.00 0.00 37.67 6.13
581 582 2.416893 TGTTTTTCTTTTGGTTTGCCGC 59.583 40.909 0.00 0.00 37.67 6.53
582 583 3.063316 CCTGTTTTTCTTTTGGTTTGCCG 59.937 43.478 0.00 0.00 37.67 5.69
583 584 3.376859 CCCTGTTTTTCTTTTGGTTTGCC 59.623 43.478 0.00 0.00 0.00 4.52
584 585 4.257731 TCCCTGTTTTTCTTTTGGTTTGC 58.742 39.130 0.00 0.00 0.00 3.68
585 586 6.607689 GTTTCCCTGTTTTTCTTTTGGTTTG 58.392 36.000 0.00 0.00 0.00 2.93
586 587 5.410132 CGTTTCCCTGTTTTTCTTTTGGTTT 59.590 36.000 0.00 0.00 0.00 3.27
587 588 4.932799 CGTTTCCCTGTTTTTCTTTTGGTT 59.067 37.500 0.00 0.00 0.00 3.67
588 589 4.020928 ACGTTTCCCTGTTTTTCTTTTGGT 60.021 37.500 0.00 0.00 0.00 3.67
589 590 4.500127 ACGTTTCCCTGTTTTTCTTTTGG 58.500 39.130 0.00 0.00 0.00 3.28
590 591 7.583860 TTAACGTTTCCCTGTTTTTCTTTTG 57.416 32.000 5.91 0.00 0.00 2.44
591 592 8.780846 AATTAACGTTTCCCTGTTTTTCTTTT 57.219 26.923 5.91 0.00 0.00 2.27
592 593 8.780846 AAATTAACGTTTCCCTGTTTTTCTTT 57.219 26.923 5.91 0.00 0.00 2.52
593 594 9.872721 TTAAATTAACGTTTCCCTGTTTTTCTT 57.127 25.926 5.91 0.00 0.00 2.52
648 649 7.556635 ACTTTTCCCCTCAGCAATAGTATAAAC 59.443 37.037 0.00 0.00 0.00 2.01
653 654 4.382685 CGACTTTTCCCCTCAGCAATAGTA 60.383 45.833 0.00 0.00 0.00 1.82
654 655 3.619979 CGACTTTTCCCCTCAGCAATAGT 60.620 47.826 0.00 0.00 0.00 2.12
655 656 2.939103 CGACTTTTCCCCTCAGCAATAG 59.061 50.000 0.00 0.00 0.00 1.73
656 657 2.939640 GCGACTTTTCCCCTCAGCAATA 60.940 50.000 0.00 0.00 0.00 1.90
678 1295 1.640428 TTGAAGCTATTCTCGCGGTG 58.360 50.000 6.13 0.00 36.33 4.94
709 1336 2.202623 CCTGCACTCTCGCGGTAC 60.203 66.667 6.13 0.00 36.48 3.34
779 1406 2.047274 TCTCTGGAAAAGCGGCCG 60.047 61.111 24.05 24.05 0.00 6.13
846 1479 0.460311 CACCTACAGATGGGTCCGAC 59.540 60.000 0.00 0.00 37.67 4.79
1092 1730 4.627467 CACCTCGTCCTTTGTATCTTCTTG 59.373 45.833 0.00 0.00 0.00 3.02
1103 1744 1.885163 CTACGGCCACCTCGTCCTTT 61.885 60.000 2.24 0.00 41.38 3.11
1442 2110 0.882927 GTACACGGCAACCTTGAGCA 60.883 55.000 0.00 0.00 0.00 4.26
1827 2498 7.052873 ACAACATTTGTTTGGGAATTGATGAA 58.947 30.769 0.00 0.00 42.22 2.57
1828 2499 6.590068 ACAACATTTGTTTGGGAATTGATGA 58.410 32.000 0.00 0.00 42.22 2.92
1829 2500 6.864360 ACAACATTTGTTTGGGAATTGATG 57.136 33.333 0.00 0.00 42.22 3.07
1852 2523 4.456535 TGAGGAATTCCGTCAGAACAAAA 58.543 39.130 18.82 0.00 42.08 2.44
2366 3045 4.745751 CCGTACCCGCCGCTGAAA 62.746 66.667 0.00 0.00 0.00 2.69
2645 3324 1.577468 CACCGCTGTACAGTTTGTGA 58.423 50.000 24.79 0.00 0.00 3.58
2683 3626 2.040544 CCTGAACCACCACCATCGC 61.041 63.158 0.00 0.00 0.00 4.58
2717 3660 0.179134 GGACAGTCGATCTTCCACGG 60.179 60.000 0.00 0.00 0.00 4.94
2747 3694 2.875933 ACCAAAAATCACGAGAAGCGAA 59.124 40.909 0.00 0.00 44.57 4.70
2750 3697 2.351738 CCCACCAAAAATCACGAGAAGC 60.352 50.000 0.00 0.00 0.00 3.86
3000 3947 4.225267 GTGGGAGTGGATAAGGAAAGAGAA 59.775 45.833 0.00 0.00 0.00 2.87
3180 4131 3.367743 TACGCGCAGACGGAGGTT 61.368 61.111 5.73 0.00 40.57 3.50
3388 4736 1.454111 ATCGAGTAGTGCGCCTCCT 60.454 57.895 4.18 0.00 0.00 3.69
3639 5010 3.055094 ACAAAACTCGGATGTGCCTCTAT 60.055 43.478 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.