Multiple sequence alignment - TraesCS2D01G254800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G254800 chr2D 100.000 3198 0 0 1 3198 307023212 307020015 0.000000e+00 5906.0
1 TraesCS2D01G254800 chr2D 83.191 821 109 13 2341 3154 27583468 27582670 0.000000e+00 725.0
2 TraesCS2D01G254800 chr2D 82.219 748 124 8 2456 3198 310298044 310297301 1.250000e-178 636.0
3 TraesCS2D01G254800 chr2B 94.160 1815 52 21 419 2207 360980866 360982652 0.000000e+00 2715.0
4 TraesCS2D01G254800 chr2B 84.628 631 54 17 2205 2832 360982678 360983268 3.550000e-164 588.0
5 TraesCS2D01G254800 chr2B 91.129 248 20 2 1 247 789980926 789980680 5.110000e-88 335.0
6 TraesCS2D01G254800 chr2B 91.566 83 7 0 2261 2343 361069970 361070052 7.250000e-22 115.0
7 TraesCS2D01G254800 chr2B 85.526 76 8 3 347 420 776044727 776044801 3.420000e-10 76.8
8 TraesCS2D01G254800 chr2A 93.258 1424 51 18 781 2199 387641589 387640206 0.000000e+00 2056.0
9 TraesCS2D01G254800 chr2A 95.467 375 8 2 419 784 387642002 387641628 9.880000e-165 590.0
10 TraesCS2D01G254800 chr1D 84.831 857 105 17 2348 3192 342845714 342846557 0.000000e+00 839.0
11 TraesCS2D01G254800 chr1D 82.367 811 115 9 2341 3145 124917562 124916774 0.000000e+00 680.0
12 TraesCS2D01G254800 chr1D 82.663 721 122 3 2456 3174 191863660 191864379 1.250000e-178 636.0
13 TraesCS2D01G254800 chr1B 83.003 859 120 13 2342 3198 250414643 250415477 0.000000e+00 754.0
14 TraesCS2D01G254800 chr6D 86.385 639 81 6 2541 3175 26117861 26118497 0.000000e+00 693.0
15 TraesCS2D01G254800 chr6D 81.526 839 133 17 2341 3174 27115506 27116327 0.000000e+00 671.0
16 TraesCS2D01G254800 chr4D 82.527 744 124 6 2456 3195 484351410 484350669 0.000000e+00 649.0
17 TraesCS2D01G254800 chr4D 79.675 123 7 9 2342 2461 28876823 28876930 4.430000e-09 73.1
18 TraesCS2D01G254800 chr6B 94.048 420 21 4 1 418 420829148 420829565 4.500000e-178 634.0
19 TraesCS2D01G254800 chr6B 89.457 313 30 3 3 313 593967788 593967477 2.990000e-105 392.0
20 TraesCS2D01G254800 chr6B 85.135 74 8 3 347 418 665740516 665740444 4.430000e-09 73.1
21 TraesCS2D01G254800 chr7D 87.469 407 46 5 13 416 477646073 477645669 6.250000e-127 464.0
22 TraesCS2D01G254800 chr7B 88.889 315 32 3 1 313 530648484 530648797 5.000000e-103 385.0
23 TraesCS2D01G254800 chr7B 94.805 77 4 0 342 418 530648798 530648874 1.560000e-23 121.0
24 TraesCS2D01G254800 chr7B 87.500 88 10 1 332 419 646294019 646293933 2.030000e-17 100.0
25 TraesCS2D01G254800 chr7B 81.356 118 10 11 2341 2450 634580528 634580641 5.680000e-13 86.1
26 TraesCS2D01G254800 chr4B 88.571 315 33 3 1 313 622123277 622122964 2.330000e-101 379.0
27 TraesCS2D01G254800 chr4B 83.373 421 33 14 1 420 600663122 600662738 3.920000e-94 355.0
28 TraesCS2D01G254800 chr4B 86.486 74 7 3 347 418 622766375 622766447 9.510000e-11 78.7
29 TraesCS2D01G254800 chr4B 84.722 72 8 3 347 416 412702177 412702107 5.720000e-08 69.4
30 TraesCS2D01G254800 chr5D 85.294 204 26 3 1 202 549470378 549470177 1.160000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G254800 chr2D 307020015 307023212 3197 True 5906.0 5906 100.0000 1 3198 1 chr2D.!!$R2 3197
1 TraesCS2D01G254800 chr2D 27582670 27583468 798 True 725.0 725 83.1910 2341 3154 1 chr2D.!!$R1 813
2 TraesCS2D01G254800 chr2D 310297301 310298044 743 True 636.0 636 82.2190 2456 3198 1 chr2D.!!$R3 742
3 TraesCS2D01G254800 chr2B 360980866 360983268 2402 False 1651.5 2715 89.3940 419 2832 2 chr2B.!!$F3 2413
4 TraesCS2D01G254800 chr2A 387640206 387642002 1796 True 1323.0 2056 94.3625 419 2199 2 chr2A.!!$R1 1780
5 TraesCS2D01G254800 chr1D 342845714 342846557 843 False 839.0 839 84.8310 2348 3192 1 chr1D.!!$F2 844
6 TraesCS2D01G254800 chr1D 124916774 124917562 788 True 680.0 680 82.3670 2341 3145 1 chr1D.!!$R1 804
7 TraesCS2D01G254800 chr1D 191863660 191864379 719 False 636.0 636 82.6630 2456 3174 1 chr1D.!!$F1 718
8 TraesCS2D01G254800 chr1B 250414643 250415477 834 False 754.0 754 83.0030 2342 3198 1 chr1B.!!$F1 856
9 TraesCS2D01G254800 chr6D 26117861 26118497 636 False 693.0 693 86.3850 2541 3175 1 chr6D.!!$F1 634
10 TraesCS2D01G254800 chr6D 27115506 27116327 821 False 671.0 671 81.5260 2341 3174 1 chr6D.!!$F2 833
11 TraesCS2D01G254800 chr4D 484350669 484351410 741 True 649.0 649 82.5270 2456 3195 1 chr4D.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.034198 TGTTGGCGTACTAGCTTGCA 59.966 50.0 0.00 0.00 37.29 4.08 F
320 321 0.169009 GCGCATTTTCCTGTCTGACC 59.831 55.0 0.30 0.00 0.00 4.02 F
325 326 0.250295 TTTTCCTGTCTGACCGGCAG 60.250 55.0 16.84 16.84 46.31 4.85 F
1652 1726 0.317770 CTGTTTGCAAACATCGGCGT 60.318 50.0 37.51 0.00 46.71 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1600 1.013596 CAGGTGTCGACAGCAAACAA 58.986 50.000 39.7 7.19 46.03 2.83 R
1615 1689 1.275291 CAGCTCTTCCGGTAACTCCAA 59.725 52.381 0.0 0.00 35.57 3.53 R
1862 1939 1.669760 TGACAATGAACCCGGCGAC 60.670 57.895 9.3 0.00 0.00 5.19 R
3085 3219 0.389296 CCGACAACACGACCATGCTA 60.389 55.000 0.0 0.00 35.09 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.928908 TTCACTTTTTGGAAAAATGATCGAG 57.071 32.000 0.00 0.00 37.27 4.04
25 26 7.270757 TCACTTTTTGGAAAAATGATCGAGA 57.729 32.000 0.00 0.00 37.27 4.04
26 27 7.711846 TCACTTTTTGGAAAAATGATCGAGAA 58.288 30.769 0.00 0.00 37.27 2.87
27 28 8.359642 TCACTTTTTGGAAAAATGATCGAGAAT 58.640 29.630 0.00 0.00 37.27 2.40
28 29 8.981647 CACTTTTTGGAAAAATGATCGAGAATT 58.018 29.630 0.00 0.00 37.27 2.17
29 30 9.546428 ACTTTTTGGAAAAATGATCGAGAATTT 57.454 25.926 0.00 0.00 37.27 1.82
84 85 6.351327 TCAAAATTTTGAAAATTTCCGCGT 57.649 29.167 27.22 9.51 43.62 6.01
85 86 6.776094 TCAAAATTTTGAAAATTTCCGCGTT 58.224 28.000 27.22 8.90 43.62 4.84
86 87 7.244192 TCAAAATTTTGAAAATTTCCGCGTTT 58.756 26.923 27.22 8.30 43.62 3.60
87 88 7.217070 TCAAAATTTTGAAAATTTCCGCGTTTG 59.783 29.630 27.22 17.48 43.62 2.93
88 89 5.726729 ATTTTGAAAATTTCCGCGTTTGT 57.273 30.435 4.92 0.00 0.00 2.83
89 90 4.763594 TTTGAAAATTTCCGCGTTTGTC 57.236 36.364 4.92 0.00 0.00 3.18
90 91 3.422417 TGAAAATTTCCGCGTTTGTCA 57.578 38.095 4.92 1.25 0.00 3.58
91 92 3.770666 TGAAAATTTCCGCGTTTGTCAA 58.229 36.364 4.92 0.00 0.00 3.18
92 93 4.174009 TGAAAATTTCCGCGTTTGTCAAA 58.826 34.783 4.92 0.00 0.00 2.69
93 94 4.625742 TGAAAATTTCCGCGTTTGTCAAAA 59.374 33.333 4.92 0.00 0.00 2.44
94 95 5.292101 TGAAAATTTCCGCGTTTGTCAAAAT 59.708 32.000 4.92 0.00 0.00 1.82
95 96 5.726729 AAATTTCCGCGTTTGTCAAAATT 57.273 30.435 4.92 3.11 0.00 1.82
96 97 4.965042 ATTTCCGCGTTTGTCAAAATTC 57.035 36.364 4.92 0.00 0.00 2.17
97 98 2.409152 TCCGCGTTTGTCAAAATTCC 57.591 45.000 4.92 0.00 0.00 3.01
98 99 1.950909 TCCGCGTTTGTCAAAATTCCT 59.049 42.857 4.92 0.00 0.00 3.36
99 100 2.359531 TCCGCGTTTGTCAAAATTCCTT 59.640 40.909 4.92 0.00 0.00 3.36
100 101 3.564644 TCCGCGTTTGTCAAAATTCCTTA 59.435 39.130 4.92 0.00 0.00 2.69
101 102 4.036498 TCCGCGTTTGTCAAAATTCCTTAA 59.964 37.500 4.92 0.00 0.00 1.85
102 103 4.920927 CCGCGTTTGTCAAAATTCCTTAAT 59.079 37.500 4.92 0.00 0.00 1.40
103 104 5.404066 CCGCGTTTGTCAAAATTCCTTAATT 59.596 36.000 4.92 0.00 36.87 1.40
104 105 6.074034 CCGCGTTTGTCAAAATTCCTTAATTT 60.074 34.615 4.92 0.00 45.20 1.82
105 106 7.001347 CGCGTTTGTCAAAATTCCTTAATTTC 58.999 34.615 0.00 0.00 43.04 2.17
106 107 7.287950 GCGTTTGTCAAAATTCCTTAATTTCC 58.712 34.615 0.00 0.00 43.04 3.13
107 108 7.042389 GCGTTTGTCAAAATTCCTTAATTTCCA 60.042 33.333 0.00 0.00 43.04 3.53
108 109 8.821894 CGTTTGTCAAAATTCCTTAATTTCCAA 58.178 29.630 0.00 0.00 43.04 3.53
112 113 9.336171 TGTCAAAATTCCTTAATTTCCAAAAGG 57.664 29.630 0.00 0.00 43.04 3.11
113 114 9.337396 GTCAAAATTCCTTAATTTCCAAAAGGT 57.663 29.630 4.29 0.00 43.04 3.50
114 115 9.336171 TCAAAATTCCTTAATTTCCAAAAGGTG 57.664 29.630 4.29 0.00 43.04 4.00
115 116 9.119418 CAAAATTCCTTAATTTCCAAAAGGTGT 57.881 29.630 4.29 0.00 43.04 4.16
116 117 8.675705 AAATTCCTTAATTTCCAAAAGGTGTG 57.324 30.769 4.29 0.00 40.51 3.82
117 118 5.208463 TCCTTAATTTCCAAAAGGTGTGC 57.792 39.130 4.29 0.00 40.58 4.57
118 119 3.987220 CCTTAATTTCCAAAAGGTGTGCG 59.013 43.478 0.00 0.00 35.95 5.34
119 120 4.261825 CCTTAATTTCCAAAAGGTGTGCGA 60.262 41.667 0.00 0.00 35.95 5.10
120 121 3.810310 AATTTCCAAAAGGTGTGCGAA 57.190 38.095 0.00 0.00 0.00 4.70
121 122 3.810310 ATTTCCAAAAGGTGTGCGAAA 57.190 38.095 0.00 0.00 0.00 3.46
122 123 3.810310 TTTCCAAAAGGTGTGCGAAAT 57.190 38.095 0.00 0.00 0.00 2.17
123 124 3.363341 TTCCAAAAGGTGTGCGAAATC 57.637 42.857 0.00 0.00 0.00 2.17
124 125 2.582052 TCCAAAAGGTGTGCGAAATCT 58.418 42.857 0.00 0.00 0.00 2.40
125 126 2.293122 TCCAAAAGGTGTGCGAAATCTG 59.707 45.455 0.00 0.00 0.00 2.90
126 127 2.293122 CCAAAAGGTGTGCGAAATCTGA 59.707 45.455 0.00 0.00 0.00 3.27
127 128 3.243367 CCAAAAGGTGTGCGAAATCTGAA 60.243 43.478 0.00 0.00 0.00 3.02
128 129 3.626028 AAAGGTGTGCGAAATCTGAAC 57.374 42.857 0.00 0.00 0.00 3.18
129 130 2.550830 AGGTGTGCGAAATCTGAACT 57.449 45.000 0.00 0.00 0.00 3.01
130 131 2.851195 AGGTGTGCGAAATCTGAACTT 58.149 42.857 0.00 0.00 0.00 2.66
131 132 3.214328 AGGTGTGCGAAATCTGAACTTT 58.786 40.909 0.00 0.00 0.00 2.66
132 133 3.632145 AGGTGTGCGAAATCTGAACTTTT 59.368 39.130 0.00 0.00 0.00 2.27
133 134 3.730715 GGTGTGCGAAATCTGAACTTTTG 59.269 43.478 0.00 0.00 0.00 2.44
134 135 3.730715 GTGTGCGAAATCTGAACTTTTGG 59.269 43.478 0.00 0.00 0.00 3.28
135 136 3.380004 TGTGCGAAATCTGAACTTTTGGT 59.620 39.130 0.00 0.00 0.00 3.67
136 137 4.142271 TGTGCGAAATCTGAACTTTTGGTT 60.142 37.500 0.00 0.00 41.40 3.67
137 138 4.207019 GTGCGAAATCTGAACTTTTGGTTG 59.793 41.667 0.00 0.00 38.41 3.77
138 139 3.182372 GCGAAATCTGAACTTTTGGTTGC 59.818 43.478 0.00 0.00 38.41 4.17
139 140 4.358851 CGAAATCTGAACTTTTGGTTGCA 58.641 39.130 0.00 0.00 38.41 4.08
140 141 4.803088 CGAAATCTGAACTTTTGGTTGCAA 59.197 37.500 0.00 0.00 38.41 4.08
141 142 5.463061 CGAAATCTGAACTTTTGGTTGCAAT 59.537 36.000 0.59 0.00 38.41 3.56
142 143 6.018832 CGAAATCTGAACTTTTGGTTGCAATT 60.019 34.615 0.59 0.00 38.41 2.32
143 144 7.465781 CGAAATCTGAACTTTTGGTTGCAATTT 60.466 33.333 0.59 0.00 38.41 1.82
144 145 6.849588 ATCTGAACTTTTGGTTGCAATTTC 57.150 33.333 0.59 0.00 38.41 2.17
145 146 5.976458 TCTGAACTTTTGGTTGCAATTTCT 58.024 33.333 0.59 0.00 38.41 2.52
146 147 6.405538 TCTGAACTTTTGGTTGCAATTTCTT 58.594 32.000 0.59 0.00 38.41 2.52
147 148 7.551585 TCTGAACTTTTGGTTGCAATTTCTTA 58.448 30.769 0.59 0.00 38.41 2.10
148 149 8.037758 TCTGAACTTTTGGTTGCAATTTCTTAA 58.962 29.630 0.59 0.00 38.41 1.85
149 150 7.969314 TGAACTTTTGGTTGCAATTTCTTAAC 58.031 30.769 0.59 0.00 38.41 2.01
150 151 7.821846 TGAACTTTTGGTTGCAATTTCTTAACT 59.178 29.630 0.59 0.00 38.41 2.24
151 152 9.308318 GAACTTTTGGTTGCAATTTCTTAACTA 57.692 29.630 0.59 0.00 38.41 2.24
152 153 9.660180 AACTTTTGGTTGCAATTTCTTAACTAA 57.340 25.926 0.59 0.00 36.70 2.24
153 154 9.830975 ACTTTTGGTTGCAATTTCTTAACTAAT 57.169 25.926 0.59 0.00 0.00 1.73
155 156 9.606631 TTTTGGTTGCAATTTCTTAACTAATGT 57.393 25.926 0.59 0.00 0.00 2.71
156 157 9.606631 TTTGGTTGCAATTTCTTAACTAATGTT 57.393 25.926 0.59 0.00 39.98 2.71
157 158 8.810652 TGGTTGCAATTTCTTAACTAATGTTC 57.189 30.769 0.59 0.00 37.59 3.18
158 159 8.417106 TGGTTGCAATTTCTTAACTAATGTTCA 58.583 29.630 0.59 0.00 37.59 3.18
159 160 8.915654 GGTTGCAATTTCTTAACTAATGTTCAG 58.084 33.333 0.59 0.00 37.59 3.02
160 161 9.463443 GTTGCAATTTCTTAACTAATGTTCAGT 57.537 29.630 0.59 0.00 37.59 3.41
166 167 9.821662 ATTTCTTAACTAATGTTCAGTTTACGC 57.178 29.630 0.00 0.00 37.42 4.42
167 168 7.355332 TCTTAACTAATGTTCAGTTTACGCC 57.645 36.000 0.00 0.00 37.42 5.68
168 169 4.657075 AACTAATGTTCAGTTTACGCCG 57.343 40.909 0.00 0.00 32.28 6.46
169 170 2.414138 ACTAATGTTCAGTTTACGCCGC 59.586 45.455 0.00 0.00 0.00 6.53
170 171 1.519408 AATGTTCAGTTTACGCCGCT 58.481 45.000 0.00 0.00 0.00 5.52
171 172 0.796312 ATGTTCAGTTTACGCCGCTG 59.204 50.000 0.00 0.00 0.00 5.18
172 173 1.154469 GTTCAGTTTACGCCGCTGC 60.154 57.895 0.00 0.00 0.00 5.25
173 174 1.301401 TTCAGTTTACGCCGCTGCT 60.301 52.632 0.00 0.00 34.43 4.24
174 175 1.289109 TTCAGTTTACGCCGCTGCTC 61.289 55.000 0.00 0.00 34.43 4.26
175 176 2.027073 CAGTTTACGCCGCTGCTCA 61.027 57.895 0.00 0.00 34.43 4.26
176 177 1.079127 AGTTTACGCCGCTGCTCAT 60.079 52.632 0.00 0.00 34.43 2.90
177 178 0.174845 AGTTTACGCCGCTGCTCATA 59.825 50.000 0.00 0.00 34.43 2.15
178 179 0.577269 GTTTACGCCGCTGCTCATAG 59.423 55.000 0.00 0.00 34.43 2.23
179 180 0.174845 TTTACGCCGCTGCTCATAGT 59.825 50.000 0.00 0.00 34.43 2.12
180 181 0.174845 TTACGCCGCTGCTCATAGTT 59.825 50.000 0.00 0.00 34.43 2.24
181 182 0.248907 TACGCCGCTGCTCATAGTTC 60.249 55.000 0.00 0.00 34.43 3.01
182 183 1.227089 CGCCGCTGCTCATAGTTCT 60.227 57.895 0.00 0.00 34.43 3.01
183 184 0.807667 CGCCGCTGCTCATAGTTCTT 60.808 55.000 0.00 0.00 34.43 2.52
184 185 1.373570 GCCGCTGCTCATAGTTCTTT 58.626 50.000 0.00 0.00 33.53 2.52
185 186 2.550978 GCCGCTGCTCATAGTTCTTTA 58.449 47.619 0.00 0.00 33.53 1.85
186 187 2.541762 GCCGCTGCTCATAGTTCTTTAG 59.458 50.000 0.00 0.00 33.53 1.85
187 188 3.738281 GCCGCTGCTCATAGTTCTTTAGA 60.738 47.826 0.00 0.00 33.53 2.10
188 189 4.626042 CCGCTGCTCATAGTTCTTTAGAT 58.374 43.478 0.00 0.00 0.00 1.98
189 190 5.773575 CCGCTGCTCATAGTTCTTTAGATA 58.226 41.667 0.00 0.00 0.00 1.98
190 191 6.393990 CCGCTGCTCATAGTTCTTTAGATAT 58.606 40.000 0.00 0.00 0.00 1.63
191 192 6.529829 CCGCTGCTCATAGTTCTTTAGATATC 59.470 42.308 0.00 0.00 0.00 1.63
192 193 7.087007 CGCTGCTCATAGTTCTTTAGATATCA 58.913 38.462 5.32 0.00 0.00 2.15
193 194 7.273164 CGCTGCTCATAGTTCTTTAGATATCAG 59.727 40.741 5.32 0.00 0.00 2.90
194 195 7.545265 GCTGCTCATAGTTCTTTAGATATCAGG 59.455 40.741 5.32 0.00 0.00 3.86
195 196 7.382110 TGCTCATAGTTCTTTAGATATCAGGC 58.618 38.462 5.32 0.00 0.00 4.85
196 197 7.234371 TGCTCATAGTTCTTTAGATATCAGGCT 59.766 37.037 5.32 0.00 0.00 4.58
197 198 8.744652 GCTCATAGTTCTTTAGATATCAGGCTA 58.255 37.037 5.32 1.96 0.00 3.93
203 204 9.594936 AGTTCTTTAGATATCAGGCTATGTACT 57.405 33.333 5.32 0.00 0.00 2.73
204 205 9.849166 GTTCTTTAGATATCAGGCTATGTACTC 57.151 37.037 5.32 0.00 0.00 2.59
205 206 8.270080 TCTTTAGATATCAGGCTATGTACTCG 57.730 38.462 5.32 0.00 0.00 4.18
206 207 7.883833 TCTTTAGATATCAGGCTATGTACTCGT 59.116 37.037 5.32 0.00 0.00 4.18
207 208 7.612668 TTAGATATCAGGCTATGTACTCGTC 57.387 40.000 5.32 0.00 0.00 4.20
208 209 5.561679 AGATATCAGGCTATGTACTCGTCA 58.438 41.667 5.32 0.00 0.00 4.35
209 210 6.004574 AGATATCAGGCTATGTACTCGTCAA 58.995 40.000 5.32 0.00 0.00 3.18
210 211 6.661377 AGATATCAGGCTATGTACTCGTCAAT 59.339 38.462 5.32 0.00 0.00 2.57
211 212 7.829706 AGATATCAGGCTATGTACTCGTCAATA 59.170 37.037 5.32 0.00 0.00 1.90
212 213 6.650427 ATCAGGCTATGTACTCGTCAATAA 57.350 37.500 0.00 0.00 0.00 1.40
213 214 6.459670 TCAGGCTATGTACTCGTCAATAAA 57.540 37.500 0.00 0.00 0.00 1.40
214 215 6.869695 TCAGGCTATGTACTCGTCAATAAAA 58.130 36.000 0.00 0.00 0.00 1.52
215 216 6.755141 TCAGGCTATGTACTCGTCAATAAAAC 59.245 38.462 0.00 0.00 0.00 2.43
216 217 6.757010 CAGGCTATGTACTCGTCAATAAAACT 59.243 38.462 0.00 0.00 0.00 2.66
217 218 6.979238 AGGCTATGTACTCGTCAATAAAACTC 59.021 38.462 0.00 0.00 0.00 3.01
218 219 6.979238 GGCTATGTACTCGTCAATAAAACTCT 59.021 38.462 0.00 0.00 0.00 3.24
219 220 7.043325 GGCTATGTACTCGTCAATAAAACTCTG 60.043 40.741 0.00 0.00 0.00 3.35
220 221 7.488471 GCTATGTACTCGTCAATAAAACTCTGT 59.512 37.037 0.00 0.00 0.00 3.41
221 222 9.355215 CTATGTACTCGTCAATAAAACTCTGTT 57.645 33.333 0.00 0.00 0.00 3.16
222 223 7.402811 TGTACTCGTCAATAAAACTCTGTTG 57.597 36.000 0.00 0.00 0.00 3.33
223 224 5.924475 ACTCGTCAATAAAACTCTGTTGG 57.076 39.130 0.00 0.00 0.00 3.77
224 225 4.213482 ACTCGTCAATAAAACTCTGTTGGC 59.787 41.667 0.00 0.00 0.00 4.52
225 226 3.479006 CGTCAATAAAACTCTGTTGGCG 58.521 45.455 0.00 0.00 42.13 5.69
226 227 3.059188 CGTCAATAAAACTCTGTTGGCGT 60.059 43.478 3.14 0.00 42.66 5.68
227 228 4.150980 CGTCAATAAAACTCTGTTGGCGTA 59.849 41.667 3.14 0.00 42.66 4.42
228 229 5.379827 GTCAATAAAACTCTGTTGGCGTAC 58.620 41.667 0.00 0.00 0.00 3.67
229 230 5.178809 GTCAATAAAACTCTGTTGGCGTACT 59.821 40.000 0.00 0.00 0.00 2.73
230 231 6.366877 GTCAATAAAACTCTGTTGGCGTACTA 59.633 38.462 0.00 0.00 0.00 1.82
231 232 6.588756 TCAATAAAACTCTGTTGGCGTACTAG 59.411 38.462 0.00 0.00 0.00 2.57
232 233 2.365408 AACTCTGTTGGCGTACTAGC 57.635 50.000 0.00 0.00 0.00 3.42
233 234 1.546961 ACTCTGTTGGCGTACTAGCT 58.453 50.000 0.00 0.00 37.29 3.32
234 235 1.893801 ACTCTGTTGGCGTACTAGCTT 59.106 47.619 0.00 0.00 37.29 3.74
235 236 2.263077 CTCTGTTGGCGTACTAGCTTG 58.737 52.381 0.00 0.00 37.29 4.01
236 237 0.721718 CTGTTGGCGTACTAGCTTGC 59.278 55.000 0.00 0.00 37.29 4.01
237 238 0.034198 TGTTGGCGTACTAGCTTGCA 59.966 50.000 0.00 0.00 37.29 4.08
238 239 1.338674 TGTTGGCGTACTAGCTTGCAT 60.339 47.619 0.00 0.00 37.29 3.96
239 240 1.062587 GTTGGCGTACTAGCTTGCATG 59.937 52.381 0.00 0.00 37.29 4.06
240 241 0.461870 TGGCGTACTAGCTTGCATGG 60.462 55.000 0.00 0.00 37.29 3.66
241 242 0.462047 GGCGTACTAGCTTGCATGGT 60.462 55.000 9.41 9.41 37.29 3.55
242 243 1.369625 GCGTACTAGCTTGCATGGTT 58.630 50.000 9.75 0.00 0.00 3.67
243 244 2.546778 GCGTACTAGCTTGCATGGTTA 58.453 47.619 9.75 0.00 0.00 2.85
244 245 2.540101 GCGTACTAGCTTGCATGGTTAG 59.460 50.000 9.75 9.11 0.00 2.34
245 246 3.782046 CGTACTAGCTTGCATGGTTAGT 58.218 45.455 9.75 13.86 35.51 2.24
246 247 4.181578 CGTACTAGCTTGCATGGTTAGTT 58.818 43.478 16.99 0.53 33.85 2.24
247 248 4.267928 CGTACTAGCTTGCATGGTTAGTTC 59.732 45.833 16.99 12.84 33.85 3.01
248 249 4.286297 ACTAGCTTGCATGGTTAGTTCA 57.714 40.909 9.75 0.00 28.87 3.18
249 250 4.651778 ACTAGCTTGCATGGTTAGTTCAA 58.348 39.130 9.75 0.00 28.87 2.69
250 251 5.256474 ACTAGCTTGCATGGTTAGTTCAAT 58.744 37.500 9.75 0.00 28.87 2.57
251 252 6.414732 ACTAGCTTGCATGGTTAGTTCAATA 58.585 36.000 9.75 0.00 28.87 1.90
252 253 6.884295 ACTAGCTTGCATGGTTAGTTCAATAA 59.116 34.615 9.75 0.00 28.87 1.40
253 254 5.954335 AGCTTGCATGGTTAGTTCAATAAC 58.046 37.500 0.00 0.00 35.35 1.89
262 263 5.055144 GGTTAGTTCAATAACCGGAGATCC 58.945 45.833 9.46 0.00 43.86 3.36
263 264 5.395990 GGTTAGTTCAATAACCGGAGATCCA 60.396 44.000 9.46 0.00 43.86 3.41
264 265 4.837093 AGTTCAATAACCGGAGATCCAA 57.163 40.909 9.46 0.00 36.15 3.53
265 266 4.770795 AGTTCAATAACCGGAGATCCAAG 58.229 43.478 9.46 0.00 36.15 3.61
266 267 3.838244 TCAATAACCGGAGATCCAAGG 57.162 47.619 9.46 0.00 35.14 3.61
267 268 3.112263 TCAATAACCGGAGATCCAAGGT 58.888 45.455 9.46 0.00 38.88 3.50
268 269 3.521937 TCAATAACCGGAGATCCAAGGTT 59.478 43.478 9.46 16.97 39.66 3.50
269 270 3.840124 ATAACCGGAGATCCAAGGTTC 57.160 47.619 9.46 0.00 39.66 3.62
270 271 0.249398 AACCGGAGATCCAAGGTTCG 59.751 55.000 9.46 0.00 39.66 3.95
271 272 0.613853 ACCGGAGATCCAAGGTTCGA 60.614 55.000 9.46 0.00 32.17 3.71
272 273 0.535335 CCGGAGATCCAAGGTTCGAA 59.465 55.000 0.00 0.00 35.14 3.71
273 274 1.641577 CGGAGATCCAAGGTTCGAAC 58.358 55.000 20.14 20.14 35.14 3.95
274 275 1.739371 CGGAGATCCAAGGTTCGAACC 60.739 57.143 35.28 35.28 42.15 3.62
275 276 1.407025 GGAGATCCAAGGTTCGAACCC 60.407 57.143 37.53 23.59 42.21 4.11
276 277 4.643386 GGAGATCCAAGGTTCGAACCCC 62.643 59.091 37.53 26.19 42.21 4.95
292 293 4.473520 CCCCTCGCTCGTGCCATT 62.474 66.667 3.52 0.00 35.36 3.16
293 294 3.197790 CCCTCGCTCGTGCCATTG 61.198 66.667 3.52 0.00 35.36 2.82
294 295 2.434884 CCTCGCTCGTGCCATTGT 60.435 61.111 3.52 0.00 35.36 2.71
295 296 2.034879 CCTCGCTCGTGCCATTGTT 61.035 57.895 3.52 0.00 35.36 2.83
296 297 1.577328 CCTCGCTCGTGCCATTGTTT 61.577 55.000 3.52 0.00 35.36 2.83
297 298 0.238289 CTCGCTCGTGCCATTGTTTT 59.762 50.000 3.52 0.00 35.36 2.43
298 299 0.665835 TCGCTCGTGCCATTGTTTTT 59.334 45.000 3.52 0.00 35.36 1.94
316 317 3.451141 TTTTTGCGCATTTTCCTGTCT 57.549 38.095 12.75 0.00 0.00 3.41
317 318 2.420628 TTTGCGCATTTTCCTGTCTG 57.579 45.000 12.75 0.00 0.00 3.51
318 319 1.603456 TTGCGCATTTTCCTGTCTGA 58.397 45.000 12.75 0.00 0.00 3.27
319 320 0.874390 TGCGCATTTTCCTGTCTGAC 59.126 50.000 5.66 0.00 0.00 3.51
320 321 0.169009 GCGCATTTTCCTGTCTGACC 59.831 55.000 0.30 0.00 0.00 4.02
321 322 0.443869 CGCATTTTCCTGTCTGACCG 59.556 55.000 5.17 0.00 0.00 4.79
322 323 0.804989 GCATTTTCCTGTCTGACCGG 59.195 55.000 11.59 11.59 0.00 5.28
323 324 0.804989 CATTTTCCTGTCTGACCGGC 59.195 55.000 12.84 0.00 0.00 6.13
324 325 0.400213 ATTTTCCTGTCTGACCGGCA 59.600 50.000 12.84 0.00 0.00 5.69
325 326 0.250295 TTTTCCTGTCTGACCGGCAG 60.250 55.000 16.84 16.84 46.31 4.85
326 327 2.731691 TTTCCTGTCTGACCGGCAGC 62.732 60.000 17.80 13.91 44.52 5.25
327 328 3.699894 CCTGTCTGACCGGCAGCT 61.700 66.667 17.80 0.00 44.52 4.24
328 329 2.125753 CTGTCTGACCGGCAGCTC 60.126 66.667 17.80 13.93 44.52 4.09
329 330 3.655810 CTGTCTGACCGGCAGCTCC 62.656 68.421 17.80 10.39 44.52 4.70
330 331 3.386237 GTCTGACCGGCAGCTCCT 61.386 66.667 17.80 0.00 44.52 3.69
331 332 3.385384 TCTGACCGGCAGCTCCTG 61.385 66.667 17.80 0.00 44.52 3.86
332 333 3.699894 CTGACCGGCAGCTCCTGT 61.700 66.667 0.00 0.00 37.90 4.00
333 334 3.241530 TGACCGGCAGCTCCTGTT 61.242 61.111 0.00 0.00 31.99 3.16
334 335 2.435059 GACCGGCAGCTCCTGTTC 60.435 66.667 0.00 0.00 31.99 3.18
335 336 3.240134 GACCGGCAGCTCCTGTTCA 62.240 63.158 0.00 0.00 31.99 3.18
336 337 2.435586 CCGGCAGCTCCTGTTCAG 60.436 66.667 0.00 0.00 33.43 3.02
337 338 3.123620 CGGCAGCTCCTGTTCAGC 61.124 66.667 0.00 0.00 37.12 4.26
338 339 2.749441 GGCAGCTCCTGTTCAGCC 60.749 66.667 0.00 0.00 37.63 4.85
339 340 3.123620 GCAGCTCCTGTTCAGCCG 61.124 66.667 0.00 0.00 37.63 5.52
340 341 3.123620 CAGCTCCTGTTCAGCCGC 61.124 66.667 0.00 0.00 37.63 6.53
341 342 3.630013 AGCTCCTGTTCAGCCGCA 61.630 61.111 11.72 0.00 37.63 5.69
342 343 2.669569 GCTCCTGTTCAGCCGCAA 60.670 61.111 0.00 0.00 0.00 4.85
343 344 2.970974 GCTCCTGTTCAGCCGCAAC 61.971 63.158 0.00 0.00 0.00 4.17
344 345 2.664851 TCCTGTTCAGCCGCAACG 60.665 61.111 0.00 0.00 0.00 4.10
345 346 2.664851 CCTGTTCAGCCGCAACGA 60.665 61.111 0.00 0.00 0.00 3.85
346 347 2.671177 CCTGTTCAGCCGCAACGAG 61.671 63.158 0.00 0.00 0.00 4.18
347 348 3.300667 CTGTTCAGCCGCAACGAGC 62.301 63.158 0.00 0.00 40.87 5.03
348 349 4.090057 GTTCAGCCGCAACGAGCC 62.090 66.667 0.00 0.00 41.38 4.70
370 371 4.406173 CAGTCGAGCGCGTCCTGT 62.406 66.667 18.40 0.00 38.98 4.00
371 372 4.406173 AGTCGAGCGCGTCCTGTG 62.406 66.667 10.30 0.00 38.98 3.66
379 380 4.681978 GCGTCCTGTGCGAAGGGT 62.682 66.667 4.76 0.00 37.96 4.34
380 381 2.432628 CGTCCTGTGCGAAGGGTC 60.433 66.667 4.76 0.00 37.96 4.46
381 382 2.741092 GTCCTGTGCGAAGGGTCA 59.259 61.111 4.76 0.00 37.96 4.02
382 383 1.296715 GTCCTGTGCGAAGGGTCAT 59.703 57.895 4.76 0.00 37.96 3.06
383 384 0.741221 GTCCTGTGCGAAGGGTCATC 60.741 60.000 4.76 0.00 37.96 2.92
384 385 1.450312 CCTGTGCGAAGGGTCATCC 60.450 63.158 0.00 0.00 33.28 3.51
392 393 4.743018 AGGGTCATCCTTTTGCCG 57.257 55.556 0.00 0.00 45.47 5.69
393 394 1.678970 AGGGTCATCCTTTTGCCGC 60.679 57.895 0.00 0.00 45.47 6.53
394 395 1.976474 GGGTCATCCTTTTGCCGCA 60.976 57.895 0.00 0.00 0.00 5.69
395 396 1.508088 GGTCATCCTTTTGCCGCAG 59.492 57.895 0.00 0.00 0.00 5.18
396 397 0.960364 GGTCATCCTTTTGCCGCAGA 60.960 55.000 0.00 0.00 0.00 4.26
397 398 0.881118 GTCATCCTTTTGCCGCAGAA 59.119 50.000 0.00 0.00 0.00 3.02
398 399 1.474077 GTCATCCTTTTGCCGCAGAAT 59.526 47.619 0.00 0.00 0.00 2.40
399 400 1.473677 TCATCCTTTTGCCGCAGAATG 59.526 47.619 0.00 0.00 40.87 2.67
413 414 1.002033 CAGAATGCGGCAAATAGGAGC 60.002 52.381 6.82 0.00 0.00 4.70
414 415 1.133976 AGAATGCGGCAAATAGGAGCT 60.134 47.619 6.82 0.00 0.00 4.09
415 416 1.265365 GAATGCGGCAAATAGGAGCTC 59.735 52.381 6.82 4.71 0.00 4.09
416 417 0.536006 ATGCGGCAAATAGGAGCTCC 60.536 55.000 26.22 26.22 0.00 4.70
417 418 1.894282 GCGGCAAATAGGAGCTCCC 60.894 63.158 29.54 12.48 36.42 4.30
440 441 5.112686 CCTTAAGAATTCCTCTTGTCCTCG 58.887 45.833 3.36 0.00 44.47 4.63
444 445 3.772025 AGAATTCCTCTTGTCCTCGTGAT 59.228 43.478 0.65 0.00 0.00 3.06
641 646 2.034066 CTCGCCTTGCCCTTTCCA 59.966 61.111 0.00 0.00 0.00 3.53
1069 1140 2.031919 ACGCCATTGCCGACAAGA 59.968 55.556 0.00 0.00 39.69 3.02
1285 1356 0.454452 CTCGCGACGACAATGACTGA 60.454 55.000 3.71 0.00 0.00 3.41
1287 1358 1.696644 GCGACGACAATGACTGACG 59.303 57.895 0.00 0.00 46.63 4.35
1288 1359 0.728129 GCGACGACAATGACTGACGA 60.728 55.000 0.00 0.00 44.50 4.20
1516 1587 4.961438 AAAACTCCAACCAATTCTGCAT 57.039 36.364 0.00 0.00 0.00 3.96
1549 1622 1.873591 GTTTGCTGTCGACACCTGAAT 59.126 47.619 15.76 0.00 0.00 2.57
1599 1673 7.428826 CAAGCATTTATATTTTCAGGTCTCCC 58.571 38.462 0.00 0.00 0.00 4.30
1626 1700 2.036571 GCCCCGTTTGGAGTTACCG 61.037 63.158 0.00 0.00 42.61 4.02
1652 1726 0.317770 CTGTTTGCAAACATCGGCGT 60.318 50.000 37.51 0.00 46.71 5.68
1704 1778 1.280421 GGAAGCCTTCAGGATGTGTCT 59.720 52.381 6.80 0.00 37.40 3.41
1759 1833 5.828299 ATGTTGCGCCTTAAGCTTAATTA 57.172 34.783 18.93 0.00 40.39 1.40
1760 1834 5.630661 TGTTGCGCCTTAAGCTTAATTAA 57.369 34.783 18.93 7.73 40.39 1.40
1761 1835 6.202516 TGTTGCGCCTTAAGCTTAATTAAT 57.797 33.333 18.93 0.00 40.39 1.40
1768 1842 7.244192 CGCCTTAAGCTTAATTAATGCCTATC 58.756 38.462 18.93 0.00 40.39 2.08
1844 1919 1.071699 GTGTACCAGACCAGGCTTGAA 59.928 52.381 0.00 0.00 0.00 2.69
1988 2066 5.185056 AGGGATTAACACCTGGAAATTTTCG 59.815 40.000 0.00 0.00 35.30 3.46
2217 2323 2.100916 AGTAGTTGGATCCGGATGAACG 59.899 50.000 24.82 0.00 0.00 3.95
2238 2344 6.262193 ACGTGTTAGAATTAATGGGTTTGG 57.738 37.500 0.00 0.00 0.00 3.28
2319 2425 7.119846 GCAAATCTTTAATCCCATATCGCTACT 59.880 37.037 0.00 0.00 0.00 2.57
2320 2426 8.446273 CAAATCTTTAATCCCATATCGCTACTG 58.554 37.037 0.00 0.00 0.00 2.74
2321 2427 6.037786 TCTTTAATCCCATATCGCTACTGG 57.962 41.667 0.00 0.00 0.00 4.00
2322 2428 5.778241 TCTTTAATCCCATATCGCTACTGGA 59.222 40.000 0.00 0.00 31.38 3.86
2323 2429 5.661056 TTAATCCCATATCGCTACTGGAG 57.339 43.478 0.00 0.00 31.38 3.86
2324 2430 1.924731 TCCCATATCGCTACTGGAGG 58.075 55.000 0.00 0.00 31.38 4.30
2325 2431 1.147191 TCCCATATCGCTACTGGAGGT 59.853 52.381 0.00 0.00 31.38 3.85
2326 2432 1.273606 CCCATATCGCTACTGGAGGTG 59.726 57.143 0.00 0.00 31.38 4.00
2328 2434 0.969894 ATATCGCTACTGGAGGTGGC 59.030 55.000 0.00 0.00 46.82 5.01
2331 2437 2.125512 GCTACTGGAGGTGGCGTG 60.126 66.667 0.00 0.00 42.21 5.34
2334 2440 0.965866 CTACTGGAGGTGGCGTGAGA 60.966 60.000 0.00 0.00 0.00 3.27
2335 2441 1.248785 TACTGGAGGTGGCGTGAGAC 61.249 60.000 0.00 0.00 42.12 3.36
2336 2442 3.302347 CTGGAGGTGGCGTGAGACC 62.302 68.421 0.00 0.00 39.67 3.85
2337 2443 3.311110 GGAGGTGGCGTGAGACCA 61.311 66.667 0.00 0.00 39.67 4.02
2341 2447 2.426023 GTGGCGTGAGACCACCTT 59.574 61.111 1.37 0.00 45.97 3.50
2342 2448 1.669440 GTGGCGTGAGACCACCTTA 59.331 57.895 1.37 0.00 45.97 2.69
2343 2449 0.669625 GTGGCGTGAGACCACCTTAC 60.670 60.000 1.37 0.00 45.97 2.34
2344 2450 1.079336 GGCGTGAGACCACCTTACC 60.079 63.158 0.00 0.00 40.12 2.85
2345 2451 1.079336 GCGTGAGACCACCTTACCC 60.079 63.158 0.00 0.00 40.12 3.69
2346 2452 1.823169 GCGTGAGACCACCTTACCCA 61.823 60.000 0.00 0.00 40.12 4.51
2347 2453 0.682852 CGTGAGACCACCTTACCCAA 59.317 55.000 0.00 0.00 40.12 4.12
2348 2454 1.071071 CGTGAGACCACCTTACCCAAA 59.929 52.381 0.00 0.00 40.12 3.28
2349 2455 2.485835 CGTGAGACCACCTTACCCAAAA 60.486 50.000 0.00 0.00 40.12 2.44
2350 2456 3.558033 GTGAGACCACCTTACCCAAAAA 58.442 45.455 0.00 0.00 37.33 1.94
2351 2457 4.149598 GTGAGACCACCTTACCCAAAAAT 58.850 43.478 0.00 0.00 37.33 1.82
2373 2479 4.456535 TGCTTTCGCCCTGCTTTATATAA 58.543 39.130 0.00 0.00 34.43 0.98
2394 2510 4.370364 AAAAGCAACGATCAACAACACT 57.630 36.364 0.00 0.00 0.00 3.55
2408 2524 1.529438 CAACACTCGGTACAAACGCAT 59.471 47.619 0.00 0.00 0.00 4.73
2435 2566 1.675972 AACACGCACACACACCCAA 60.676 52.632 0.00 0.00 0.00 4.12
2436 2567 1.653094 AACACGCACACACACCCAAG 61.653 55.000 0.00 0.00 0.00 3.61
2437 2568 2.515991 ACGCACACACACCCAAGG 60.516 61.111 0.00 0.00 0.00 3.61
2438 2569 2.515991 CGCACACACACCCAAGGT 60.516 61.111 0.00 0.00 35.62 3.50
2439 2570 1.227704 CGCACACACACCCAAGGTA 60.228 57.895 0.00 0.00 32.11 3.08
2440 2571 1.227999 CGCACACACACCCAAGGTAG 61.228 60.000 0.00 0.00 32.11 3.18
2441 2572 0.889186 GCACACACACCCAAGGTAGG 60.889 60.000 0.00 0.00 32.11 3.18
2442 2573 0.762418 CACACACACCCAAGGTAGGA 59.238 55.000 0.00 0.00 32.11 2.94
2443 2574 1.351017 CACACACACCCAAGGTAGGAT 59.649 52.381 0.00 0.00 32.11 3.24
2444 2575 2.569853 CACACACACCCAAGGTAGGATA 59.430 50.000 0.00 0.00 32.11 2.59
2445 2576 2.570302 ACACACACCCAAGGTAGGATAC 59.430 50.000 0.00 0.00 42.04 2.24
2446 2577 2.569853 CACACACCCAAGGTAGGATACA 59.430 50.000 0.00 0.00 45.43 2.29
2447 2578 3.199946 CACACACCCAAGGTAGGATACAT 59.800 47.826 0.00 0.00 45.43 2.29
2448 2579 4.407621 CACACACCCAAGGTAGGATACATA 59.592 45.833 0.00 0.00 45.43 2.29
2449 2580 4.654262 ACACACCCAAGGTAGGATACATAG 59.346 45.833 0.00 0.00 45.43 2.23
2450 2581 4.899457 CACACCCAAGGTAGGATACATAGA 59.101 45.833 0.00 0.00 45.43 1.98
2451 2582 4.900054 ACACCCAAGGTAGGATACATAGAC 59.100 45.833 0.00 0.00 45.43 2.59
2452 2583 4.022242 CACCCAAGGTAGGATACATAGACG 60.022 50.000 0.00 0.00 45.43 4.18
2453 2584 3.056749 CCCAAGGTAGGATACATAGACGC 60.057 52.174 0.00 0.00 45.43 5.19
2454 2585 3.827302 CCAAGGTAGGATACATAGACGCT 59.173 47.826 0.00 0.00 45.43 5.07
2501 2632 1.369091 GCAACACCATCCCTAGCACG 61.369 60.000 0.00 0.00 0.00 5.34
2514 2645 0.815734 TAGCACGACAAGAGTAGCCC 59.184 55.000 0.00 0.00 0.00 5.19
2538 2669 1.139989 CTATAGCCATGAACACGCCG 58.860 55.000 0.00 0.00 0.00 6.46
2570 2701 3.118775 AGTGAAGCCGCATATGACTAACA 60.119 43.478 6.97 2.51 0.00 2.41
2608 2740 0.905357 CTTCAGGAAGGGGACGACAT 59.095 55.000 1.01 0.00 34.87 3.06
2662 2794 3.330701 AGAGTTTTCCCTGGAGCAATACA 59.669 43.478 0.00 0.00 0.00 2.29
2673 2805 1.472480 GAGCAATACAACGGGCAATGT 59.528 47.619 0.00 0.00 0.00 2.71
2832 2965 2.629656 GCAACCGAGCAGCACCAAT 61.630 57.895 0.00 0.00 0.00 3.16
2839 2972 4.120331 GCAGCACCAATCCACGGC 62.120 66.667 0.00 0.00 0.00 5.68
2859 2992 1.960040 CTCTGCCCATGAGCACCGTA 61.960 60.000 0.00 0.00 38.00 4.02
2866 2999 1.134401 CCATGAGCACCGTAGAACCAT 60.134 52.381 0.00 0.00 0.00 3.55
2905 3038 1.271597 GGCATCCAAGACCTTGACACT 60.272 52.381 11.06 0.00 42.93 3.55
2906 3039 1.808945 GCATCCAAGACCTTGACACTG 59.191 52.381 11.06 4.53 42.93 3.66
2911 3044 0.398318 AAGACCTTGACACTGCCTCC 59.602 55.000 0.00 0.00 0.00 4.30
2920 3053 3.999285 ACTGCCTCCCCCGAGACT 61.999 66.667 0.00 0.00 38.52 3.24
2931 3064 3.203412 CGAGACTCGCCGCTACCT 61.203 66.667 12.67 0.00 31.14 3.08
2947 3080 4.694339 GCTACCTCAACCAAAGATACGAT 58.306 43.478 0.00 0.00 0.00 3.73
2962 3095 2.901042 GATCGGAAAGGACCCGCT 59.099 61.111 0.00 0.00 46.10 5.52
3034 3167 1.414181 ACTGGCCTTCATCGACCTATG 59.586 52.381 3.32 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.928908 TTCTCGATCATTTTTCCAAAAAGTG 57.071 32.000 3.74 2.06 40.78 3.16
3 4 9.546428 AAATTCTCGATCATTTTTCCAAAAAGT 57.454 25.926 3.74 0.00 40.78 2.66
32 33 9.559958 CATCTTACGAAACTGCAAAAGATATTT 57.440 29.630 0.00 0.00 33.20 1.40
33 34 8.730680 ACATCTTACGAAACTGCAAAAGATATT 58.269 29.630 0.00 0.00 33.20 1.28
34 35 8.268850 ACATCTTACGAAACTGCAAAAGATAT 57.731 30.769 0.00 0.00 33.20 1.63
35 36 7.667043 ACATCTTACGAAACTGCAAAAGATA 57.333 32.000 0.00 0.00 33.20 1.98
36 37 6.560253 ACATCTTACGAAACTGCAAAAGAT 57.440 33.333 0.00 0.00 34.80 2.40
37 38 6.371809 AACATCTTACGAAACTGCAAAAGA 57.628 33.333 0.00 0.00 0.00 2.52
38 39 6.690957 TGAAACATCTTACGAAACTGCAAAAG 59.309 34.615 0.00 0.00 0.00 2.27
39 40 6.556212 TGAAACATCTTACGAAACTGCAAAA 58.444 32.000 0.00 0.00 0.00 2.44
40 41 6.125327 TGAAACATCTTACGAAACTGCAAA 57.875 33.333 0.00 0.00 0.00 3.68
41 42 5.743026 TGAAACATCTTACGAAACTGCAA 57.257 34.783 0.00 0.00 0.00 4.08
42 43 5.743026 TTGAAACATCTTACGAAACTGCA 57.257 34.783 0.00 0.00 0.00 4.41
43 44 7.623268 ATTTTGAAACATCTTACGAAACTGC 57.377 32.000 0.00 0.00 0.00 4.40
61 62 6.351327 ACGCGGAAATTTTCAAAATTTTGA 57.649 29.167 26.01 26.01 44.78 2.69
62 63 7.007815 ACAAACGCGGAAATTTTCAAAATTTTG 59.992 29.630 22.40 22.40 39.48 2.44
63 64 7.024171 ACAAACGCGGAAATTTTCAAAATTTT 58.976 26.923 19.53 9.21 30.68 1.82
64 65 6.547283 ACAAACGCGGAAATTTTCAAAATTT 58.453 28.000 18.79 18.79 32.98 1.82
65 66 6.112994 ACAAACGCGGAAATTTTCAAAATT 57.887 29.167 12.47 1.98 0.00 1.82
66 67 5.292101 TGACAAACGCGGAAATTTTCAAAAT 59.708 32.000 12.47 0.00 0.00 1.82
67 68 4.625742 TGACAAACGCGGAAATTTTCAAAA 59.374 33.333 12.47 0.00 0.00 2.44
68 69 4.174009 TGACAAACGCGGAAATTTTCAAA 58.826 34.783 12.47 0.00 0.00 2.69
69 70 3.770666 TGACAAACGCGGAAATTTTCAA 58.229 36.364 12.47 0.00 0.00 2.69
70 71 3.422417 TGACAAACGCGGAAATTTTCA 57.578 38.095 12.47 6.04 0.00 2.69
71 72 4.763594 TTTGACAAACGCGGAAATTTTC 57.236 36.364 12.47 0.24 0.00 2.29
72 73 5.726729 ATTTTGACAAACGCGGAAATTTT 57.273 30.435 12.47 0.00 0.00 1.82
73 74 5.277106 GGAATTTTGACAAACGCGGAAATTT 60.277 36.000 12.47 0.00 29.71 1.82
74 75 4.210328 GGAATTTTGACAAACGCGGAAATT 59.790 37.500 12.47 10.55 31.55 1.82
75 76 3.738791 GGAATTTTGACAAACGCGGAAAT 59.261 39.130 12.47 2.45 0.00 2.17
76 77 3.117046 GGAATTTTGACAAACGCGGAAA 58.883 40.909 12.47 0.00 0.00 3.13
77 78 2.359531 AGGAATTTTGACAAACGCGGAA 59.640 40.909 12.47 0.00 0.00 4.30
78 79 1.950909 AGGAATTTTGACAAACGCGGA 59.049 42.857 12.47 0.00 0.00 5.54
79 80 2.415697 AGGAATTTTGACAAACGCGG 57.584 45.000 12.47 0.00 0.00 6.46
80 81 6.446659 AATTAAGGAATTTTGACAAACGCG 57.553 33.333 3.53 3.53 30.77 6.01
81 82 7.042389 TGGAAATTAAGGAATTTTGACAAACGC 60.042 33.333 0.00 0.00 43.76 4.84
82 83 8.359060 TGGAAATTAAGGAATTTTGACAAACG 57.641 30.769 0.00 0.00 43.76 3.60
86 87 9.336171 CCTTTTGGAAATTAAGGAATTTTGACA 57.664 29.630 0.00 0.00 43.76 3.58
87 88 9.337396 ACCTTTTGGAAATTAAGGAATTTTGAC 57.663 29.630 10.32 0.00 43.76 3.18
88 89 9.336171 CACCTTTTGGAAATTAAGGAATTTTGA 57.664 29.630 10.32 0.00 43.76 2.69
89 90 9.119418 ACACCTTTTGGAAATTAAGGAATTTTG 57.881 29.630 10.32 1.76 43.76 2.44
90 91 9.119418 CACACCTTTTGGAAATTAAGGAATTTT 57.881 29.630 10.32 0.00 43.76 1.82
91 92 7.228507 GCACACCTTTTGGAAATTAAGGAATTT 59.771 33.333 10.32 0.00 45.88 1.82
92 93 6.710295 GCACACCTTTTGGAAATTAAGGAATT 59.290 34.615 10.32 0.00 44.07 2.17
93 94 6.230472 GCACACCTTTTGGAAATTAAGGAAT 58.770 36.000 10.32 0.00 44.07 3.01
94 95 5.606505 GCACACCTTTTGGAAATTAAGGAA 58.393 37.500 10.32 0.00 44.07 3.36
95 96 4.261825 CGCACACCTTTTGGAAATTAAGGA 60.262 41.667 10.32 0.00 44.07 3.36
96 97 3.987220 CGCACACCTTTTGGAAATTAAGG 59.013 43.478 2.90 2.90 44.07 2.69
97 98 4.865776 TCGCACACCTTTTGGAAATTAAG 58.134 39.130 0.00 0.00 44.07 1.85
98 99 4.920640 TCGCACACCTTTTGGAAATTAA 57.079 36.364 0.00 0.00 44.07 1.40
99 100 4.920640 TTCGCACACCTTTTGGAAATTA 57.079 36.364 0.00 0.00 44.07 1.40
100 101 3.810310 TTCGCACACCTTTTGGAAATT 57.190 38.095 0.00 0.00 44.07 1.82
101 102 3.810310 TTTCGCACACCTTTTGGAAAT 57.190 38.095 0.00 0.00 44.07 2.17
102 103 3.383185 AGATTTCGCACACCTTTTGGAAA 59.617 39.130 0.00 0.00 44.07 3.13
103 104 2.955660 AGATTTCGCACACCTTTTGGAA 59.044 40.909 0.00 0.00 44.07 3.53
104 105 2.293122 CAGATTTCGCACACCTTTTGGA 59.707 45.455 0.00 0.00 44.07 3.53
106 107 3.624326 TCAGATTTCGCACACCTTTTG 57.376 42.857 0.00 0.00 0.00 2.44
107 108 3.632145 AGTTCAGATTTCGCACACCTTTT 59.368 39.130 0.00 0.00 0.00 2.27
108 109 3.214328 AGTTCAGATTTCGCACACCTTT 58.786 40.909 0.00 0.00 0.00 3.11
109 110 2.851195 AGTTCAGATTTCGCACACCTT 58.149 42.857 0.00 0.00 0.00 3.50
110 111 2.550830 AGTTCAGATTTCGCACACCT 57.449 45.000 0.00 0.00 0.00 4.00
111 112 3.626028 AAAGTTCAGATTTCGCACACC 57.374 42.857 0.00 0.00 0.00 4.16
112 113 3.730715 CCAAAAGTTCAGATTTCGCACAC 59.269 43.478 0.00 0.00 0.00 3.82
113 114 3.380004 ACCAAAAGTTCAGATTTCGCACA 59.620 39.130 0.00 0.00 0.00 4.57
114 115 3.964909 ACCAAAAGTTCAGATTTCGCAC 58.035 40.909 0.00 0.00 0.00 5.34
115 116 4.358851 CAACCAAAAGTTCAGATTTCGCA 58.641 39.130 0.00 0.00 36.18 5.10
116 117 3.182372 GCAACCAAAAGTTCAGATTTCGC 59.818 43.478 0.00 0.00 36.18 4.70
117 118 4.358851 TGCAACCAAAAGTTCAGATTTCG 58.641 39.130 0.00 0.00 36.18 3.46
118 119 6.849588 ATTGCAACCAAAAGTTCAGATTTC 57.150 33.333 0.00 0.00 36.18 2.17
119 120 7.553760 AGAAATTGCAACCAAAAGTTCAGATTT 59.446 29.630 0.00 0.00 36.18 2.17
120 121 7.049754 AGAAATTGCAACCAAAAGTTCAGATT 58.950 30.769 0.00 0.00 36.18 2.40
121 122 6.585416 AGAAATTGCAACCAAAAGTTCAGAT 58.415 32.000 0.00 0.00 36.18 2.90
122 123 5.976458 AGAAATTGCAACCAAAAGTTCAGA 58.024 33.333 0.00 0.00 36.18 3.27
123 124 6.667007 AAGAAATTGCAACCAAAAGTTCAG 57.333 33.333 0.00 0.00 36.18 3.02
124 125 7.821846 AGTTAAGAAATTGCAACCAAAAGTTCA 59.178 29.630 0.00 0.00 36.18 3.18
125 126 8.196802 AGTTAAGAAATTGCAACCAAAAGTTC 57.803 30.769 0.00 0.00 36.18 3.01
126 127 9.660180 TTAGTTAAGAAATTGCAACCAAAAGTT 57.340 25.926 0.00 0.00 40.16 2.66
127 128 9.830975 ATTAGTTAAGAAATTGCAACCAAAAGT 57.169 25.926 0.00 0.00 34.05 2.66
129 130 9.606631 ACATTAGTTAAGAAATTGCAACCAAAA 57.393 25.926 0.00 0.00 34.05 2.44
130 131 9.606631 AACATTAGTTAAGAAATTGCAACCAAA 57.393 25.926 0.00 0.00 35.85 3.28
131 132 9.255304 GAACATTAGTTAAGAAATTGCAACCAA 57.745 29.630 0.00 0.00 38.30 3.67
132 133 8.417106 TGAACATTAGTTAAGAAATTGCAACCA 58.583 29.630 0.00 0.00 38.30 3.67
133 134 8.810652 TGAACATTAGTTAAGAAATTGCAACC 57.189 30.769 0.00 0.00 38.30 3.77
134 135 9.463443 ACTGAACATTAGTTAAGAAATTGCAAC 57.537 29.630 0.00 0.00 38.32 4.17
140 141 9.821662 GCGTAAACTGAACATTAGTTAAGAAAT 57.178 29.630 0.00 0.00 38.32 2.17
141 142 8.284693 GGCGTAAACTGAACATTAGTTAAGAAA 58.715 33.333 0.00 0.00 38.32 2.52
142 143 7.359431 CGGCGTAAACTGAACATTAGTTAAGAA 60.359 37.037 0.00 0.00 38.32 2.52
143 144 6.089820 CGGCGTAAACTGAACATTAGTTAAGA 59.910 38.462 0.00 0.00 38.32 2.10
144 145 6.238508 CGGCGTAAACTGAACATTAGTTAAG 58.761 40.000 0.00 0.00 41.33 1.85
145 146 5.389725 GCGGCGTAAACTGAACATTAGTTAA 60.390 40.000 9.37 0.00 37.39 2.01
146 147 4.091800 GCGGCGTAAACTGAACATTAGTTA 59.908 41.667 9.37 0.00 37.39 2.24
147 148 3.120442 GCGGCGTAAACTGAACATTAGTT 60.120 43.478 9.37 0.00 39.92 2.24
148 149 2.414138 GCGGCGTAAACTGAACATTAGT 59.586 45.455 9.37 0.00 0.00 2.24
149 150 2.671396 AGCGGCGTAAACTGAACATTAG 59.329 45.455 9.37 0.00 0.00 1.73
150 151 2.413796 CAGCGGCGTAAACTGAACATTA 59.586 45.455 9.37 0.00 33.10 1.90
151 152 1.196808 CAGCGGCGTAAACTGAACATT 59.803 47.619 9.37 0.00 33.10 2.71
152 153 0.796312 CAGCGGCGTAAACTGAACAT 59.204 50.000 9.37 0.00 33.10 2.71
153 154 1.837538 GCAGCGGCGTAAACTGAACA 61.838 55.000 14.96 0.00 33.10 3.18
154 155 1.154469 GCAGCGGCGTAAACTGAAC 60.154 57.895 14.96 0.00 33.10 3.18
155 156 3.249999 GCAGCGGCGTAAACTGAA 58.750 55.556 14.96 0.00 33.10 3.02
165 166 1.373570 AAAGAACTATGAGCAGCGGC 58.626 50.000 0.00 0.00 41.61 6.53
166 167 4.046938 TCTAAAGAACTATGAGCAGCGG 57.953 45.455 0.00 0.00 0.00 5.52
167 168 7.087007 TGATATCTAAAGAACTATGAGCAGCG 58.913 38.462 3.98 0.00 0.00 5.18
168 169 7.545265 CCTGATATCTAAAGAACTATGAGCAGC 59.455 40.741 3.98 0.00 0.00 5.25
169 170 7.545265 GCCTGATATCTAAAGAACTATGAGCAG 59.455 40.741 3.98 0.00 0.00 4.24
170 171 7.234371 AGCCTGATATCTAAAGAACTATGAGCA 59.766 37.037 3.98 0.00 0.00 4.26
171 172 7.610865 AGCCTGATATCTAAAGAACTATGAGC 58.389 38.462 3.98 0.00 0.00 4.26
177 178 9.594936 AGTACATAGCCTGATATCTAAAGAACT 57.405 33.333 3.98 0.00 0.00 3.01
178 179 9.849166 GAGTACATAGCCTGATATCTAAAGAAC 57.151 37.037 3.98 0.00 0.00 3.01
179 180 8.731605 CGAGTACATAGCCTGATATCTAAAGAA 58.268 37.037 3.98 0.00 0.00 2.52
180 181 7.883833 ACGAGTACATAGCCTGATATCTAAAGA 59.116 37.037 3.98 0.00 0.00 2.52
181 182 8.046294 ACGAGTACATAGCCTGATATCTAAAG 57.954 38.462 3.98 0.00 0.00 1.85
182 183 7.664318 TGACGAGTACATAGCCTGATATCTAAA 59.336 37.037 3.98 0.00 0.00 1.85
183 184 7.166167 TGACGAGTACATAGCCTGATATCTAA 58.834 38.462 3.98 0.00 0.00 2.10
184 185 6.708285 TGACGAGTACATAGCCTGATATCTA 58.292 40.000 3.98 0.00 0.00 1.98
185 186 5.561679 TGACGAGTACATAGCCTGATATCT 58.438 41.667 3.98 0.00 0.00 1.98
186 187 5.881777 TGACGAGTACATAGCCTGATATC 57.118 43.478 0.00 0.00 0.00 1.63
187 188 6.842437 ATTGACGAGTACATAGCCTGATAT 57.158 37.500 0.00 0.00 0.00 1.63
188 189 7.754851 TTATTGACGAGTACATAGCCTGATA 57.245 36.000 0.00 0.00 0.00 2.15
189 190 6.650427 TTATTGACGAGTACATAGCCTGAT 57.350 37.500 0.00 0.00 0.00 2.90
190 191 6.459670 TTTATTGACGAGTACATAGCCTGA 57.540 37.500 0.00 0.00 0.00 3.86
191 192 6.757010 AGTTTTATTGACGAGTACATAGCCTG 59.243 38.462 0.00 0.00 0.00 4.85
192 193 6.875076 AGTTTTATTGACGAGTACATAGCCT 58.125 36.000 0.00 0.00 0.00 4.58
193 194 6.979238 AGAGTTTTATTGACGAGTACATAGCC 59.021 38.462 0.00 0.00 0.00 3.93
194 195 7.488471 ACAGAGTTTTATTGACGAGTACATAGC 59.512 37.037 0.00 0.00 0.00 2.97
195 196 8.912787 ACAGAGTTTTATTGACGAGTACATAG 57.087 34.615 0.00 0.00 0.00 2.23
196 197 9.135843 CAACAGAGTTTTATTGACGAGTACATA 57.864 33.333 0.00 0.00 0.00 2.29
197 198 7.117812 CCAACAGAGTTTTATTGACGAGTACAT 59.882 37.037 0.00 0.00 0.00 2.29
198 199 6.422701 CCAACAGAGTTTTATTGACGAGTACA 59.577 38.462 0.00 0.00 0.00 2.90
199 200 6.617953 GCCAACAGAGTTTTATTGACGAGTAC 60.618 42.308 0.00 0.00 0.00 2.73
200 201 5.407387 GCCAACAGAGTTTTATTGACGAGTA 59.593 40.000 0.00 0.00 0.00 2.59
201 202 4.213482 GCCAACAGAGTTTTATTGACGAGT 59.787 41.667 0.00 0.00 0.00 4.18
202 203 4.666655 CGCCAACAGAGTTTTATTGACGAG 60.667 45.833 0.00 0.00 30.67 4.18
203 204 3.185594 CGCCAACAGAGTTTTATTGACGA 59.814 43.478 0.00 0.00 30.67 4.20
204 205 3.059188 ACGCCAACAGAGTTTTATTGACG 60.059 43.478 0.00 0.00 34.61 4.35
205 206 4.483476 ACGCCAACAGAGTTTTATTGAC 57.517 40.909 0.00 0.00 0.00 3.18
206 207 5.302360 AGTACGCCAACAGAGTTTTATTGA 58.698 37.500 0.00 0.00 0.00 2.57
207 208 5.607119 AGTACGCCAACAGAGTTTTATTG 57.393 39.130 0.00 0.00 0.00 1.90
208 209 5.350640 GCTAGTACGCCAACAGAGTTTTATT 59.649 40.000 0.00 0.00 0.00 1.40
209 210 4.868734 GCTAGTACGCCAACAGAGTTTTAT 59.131 41.667 0.00 0.00 0.00 1.40
210 211 4.021719 AGCTAGTACGCCAACAGAGTTTTA 60.022 41.667 0.00 0.00 0.00 1.52
211 212 3.064931 GCTAGTACGCCAACAGAGTTTT 58.935 45.455 0.00 0.00 0.00 2.43
212 213 2.299297 AGCTAGTACGCCAACAGAGTTT 59.701 45.455 0.00 0.00 0.00 2.66
213 214 1.893801 AGCTAGTACGCCAACAGAGTT 59.106 47.619 0.00 0.00 0.00 3.01
214 215 1.546961 AGCTAGTACGCCAACAGAGT 58.453 50.000 0.00 0.00 0.00 3.24
215 216 2.263077 CAAGCTAGTACGCCAACAGAG 58.737 52.381 0.00 0.00 0.00 3.35
216 217 1.671850 GCAAGCTAGTACGCCAACAGA 60.672 52.381 0.00 0.00 0.00 3.41
217 218 0.721718 GCAAGCTAGTACGCCAACAG 59.278 55.000 0.00 0.00 0.00 3.16
218 219 0.034198 TGCAAGCTAGTACGCCAACA 59.966 50.000 0.00 0.00 0.00 3.33
219 220 1.062587 CATGCAAGCTAGTACGCCAAC 59.937 52.381 0.00 0.00 0.00 3.77
220 221 1.368641 CATGCAAGCTAGTACGCCAA 58.631 50.000 0.00 0.00 0.00 4.52
221 222 0.461870 CCATGCAAGCTAGTACGCCA 60.462 55.000 0.00 0.00 0.00 5.69
222 223 0.462047 ACCATGCAAGCTAGTACGCC 60.462 55.000 0.00 0.00 0.00 5.68
223 224 1.369625 AACCATGCAAGCTAGTACGC 58.630 50.000 0.00 0.00 0.00 4.42
224 225 3.782046 ACTAACCATGCAAGCTAGTACG 58.218 45.455 0.00 0.00 0.00 3.67
225 226 5.175859 TGAACTAACCATGCAAGCTAGTAC 58.824 41.667 0.00 0.00 0.00 2.73
226 227 5.414789 TGAACTAACCATGCAAGCTAGTA 57.585 39.130 0.00 0.00 0.00 1.82
227 228 4.286297 TGAACTAACCATGCAAGCTAGT 57.714 40.909 0.00 0.00 0.00 2.57
228 229 5.824904 ATTGAACTAACCATGCAAGCTAG 57.175 39.130 0.00 0.00 0.00 3.42
229 230 6.094881 GGTTATTGAACTAACCATGCAAGCTA 59.905 38.462 7.89 0.00 46.62 3.32
230 231 5.105756 GGTTATTGAACTAACCATGCAAGCT 60.106 40.000 7.89 0.00 46.62 3.74
231 232 5.102313 GGTTATTGAACTAACCATGCAAGC 58.898 41.667 7.89 0.00 46.62 4.01
239 240 5.055144 GGATCTCCGGTTATTGAACTAACC 58.945 45.833 0.00 3.43 44.80 2.85
240 241 5.667466 TGGATCTCCGGTTATTGAACTAAC 58.333 41.667 0.00 0.00 39.43 2.34
241 242 5.943349 TGGATCTCCGGTTATTGAACTAA 57.057 39.130 0.00 0.00 39.43 2.24
242 243 5.163343 CCTTGGATCTCCGGTTATTGAACTA 60.163 44.000 0.00 0.00 39.43 2.24
243 244 4.384208 CCTTGGATCTCCGGTTATTGAACT 60.384 45.833 0.00 0.00 39.43 3.01
244 245 3.877508 CCTTGGATCTCCGGTTATTGAAC 59.122 47.826 0.00 0.00 39.43 3.18
245 246 3.521937 ACCTTGGATCTCCGGTTATTGAA 59.478 43.478 0.00 0.00 39.43 2.69
246 247 3.112263 ACCTTGGATCTCCGGTTATTGA 58.888 45.455 0.00 0.00 39.43 2.57
247 248 3.560636 ACCTTGGATCTCCGGTTATTG 57.439 47.619 0.00 0.00 39.43 1.90
248 249 3.431766 CGAACCTTGGATCTCCGGTTATT 60.432 47.826 0.00 0.00 39.04 1.40
249 250 2.102588 CGAACCTTGGATCTCCGGTTAT 59.897 50.000 0.00 0.00 39.04 1.89
250 251 1.479323 CGAACCTTGGATCTCCGGTTA 59.521 52.381 0.00 0.00 39.04 2.85
251 252 0.249398 CGAACCTTGGATCTCCGGTT 59.751 55.000 0.00 7.92 40.79 4.44
252 253 0.613853 TCGAACCTTGGATCTCCGGT 60.614 55.000 0.00 0.00 39.43 5.28
253 254 0.535335 TTCGAACCTTGGATCTCCGG 59.465 55.000 0.00 0.00 39.43 5.14
254 255 1.641577 GTTCGAACCTTGGATCTCCG 58.358 55.000 17.68 0.00 39.43 4.63
255 256 2.025589 GGTTCGAACCTTGGATCTCC 57.974 55.000 34.98 9.09 45.75 3.71
275 276 4.473520 AATGGCACGAGCGAGGGG 62.474 66.667 0.00 0.00 43.41 4.79
276 277 3.197790 CAATGGCACGAGCGAGGG 61.198 66.667 0.00 0.00 43.41 4.30
277 278 1.577328 AAACAATGGCACGAGCGAGG 61.577 55.000 0.00 0.00 43.41 4.63
278 279 0.238289 AAAACAATGGCACGAGCGAG 59.762 50.000 0.00 0.00 43.41 5.03
279 280 0.665835 AAAAACAATGGCACGAGCGA 59.334 45.000 0.00 0.00 43.41 4.93
280 281 3.177883 AAAAACAATGGCACGAGCG 57.822 47.368 0.00 0.00 43.41 5.03
296 297 3.122297 CAGACAGGAAAATGCGCAAAAA 58.878 40.909 17.11 0.00 0.00 1.94
297 298 2.360483 TCAGACAGGAAAATGCGCAAAA 59.640 40.909 17.11 0.00 0.00 2.44
298 299 1.952990 TCAGACAGGAAAATGCGCAAA 59.047 42.857 17.11 0.00 0.00 3.68
299 300 1.266718 GTCAGACAGGAAAATGCGCAA 59.733 47.619 17.11 0.00 0.00 4.85
300 301 0.874390 GTCAGACAGGAAAATGCGCA 59.126 50.000 14.96 14.96 0.00 6.09
301 302 0.169009 GGTCAGACAGGAAAATGCGC 59.831 55.000 0.00 0.00 0.00 6.09
302 303 0.443869 CGGTCAGACAGGAAAATGCG 59.556 55.000 2.17 0.00 0.00 4.73
303 304 0.804989 CCGGTCAGACAGGAAAATGC 59.195 55.000 14.28 0.00 35.32 3.56
304 305 0.804989 GCCGGTCAGACAGGAAAATG 59.195 55.000 22.82 0.00 35.32 2.32
305 306 0.400213 TGCCGGTCAGACAGGAAAAT 59.600 50.000 22.82 0.00 35.32 1.82
306 307 0.250295 CTGCCGGTCAGACAGGAAAA 60.250 55.000 22.82 6.93 45.72 2.29
307 308 1.371183 CTGCCGGTCAGACAGGAAA 59.629 57.895 22.82 9.28 45.72 3.13
308 309 3.059982 CTGCCGGTCAGACAGGAA 58.940 61.111 22.82 12.12 45.72 3.36
309 310 3.695606 GCTGCCGGTCAGACAGGA 61.696 66.667 22.82 7.64 45.72 3.86
310 311 3.655810 GAGCTGCCGGTCAGACAGG 62.656 68.421 24.32 15.08 45.72 4.00
311 312 2.125753 GAGCTGCCGGTCAGACAG 60.126 66.667 24.32 14.35 45.72 3.51
312 313 3.695606 GGAGCTGCCGGTCAGACA 61.696 66.667 24.32 4.45 45.72 3.41
313 314 3.386237 AGGAGCTGCCGGTCAGAC 61.386 66.667 24.32 17.30 45.72 3.51
314 315 3.385384 CAGGAGCTGCCGGTCAGA 61.385 66.667 24.32 0.00 45.72 3.27
315 316 3.245668 AACAGGAGCTGCCGGTCAG 62.246 63.158 18.16 18.16 44.81 3.51
316 317 3.240134 GAACAGGAGCTGCCGGTCA 62.240 63.158 1.90 0.00 44.81 4.02
317 318 2.435059 GAACAGGAGCTGCCGGTC 60.435 66.667 1.90 0.00 44.81 4.79
319 320 2.435586 CTGAACAGGAGCTGCCGG 60.436 66.667 0.00 0.00 43.43 6.13
320 321 3.123620 GCTGAACAGGAGCTGCCG 61.124 66.667 0.00 0.00 43.43 5.69
321 322 2.749441 GGCTGAACAGGAGCTGCC 60.749 66.667 0.00 0.00 40.97 4.85
322 323 3.123620 CGGCTGAACAGGAGCTGC 61.124 66.667 0.00 0.00 36.07 5.25
323 324 3.123620 GCGGCTGAACAGGAGCTG 61.124 66.667 0.00 0.00 44.42 4.24
324 325 3.182590 TTGCGGCTGAACAGGAGCT 62.183 57.895 0.00 0.00 36.63 4.09
325 326 2.669569 TTGCGGCTGAACAGGAGC 60.670 61.111 0.00 0.00 35.57 4.70
326 327 2.671177 CGTTGCGGCTGAACAGGAG 61.671 63.158 0.00 0.00 0.00 3.69
327 328 2.664851 CGTTGCGGCTGAACAGGA 60.665 61.111 0.00 0.00 0.00 3.86
328 329 2.664851 TCGTTGCGGCTGAACAGG 60.665 61.111 0.00 0.00 0.00 4.00
329 330 2.856032 CTCGTTGCGGCTGAACAG 59.144 61.111 0.00 0.00 0.00 3.16
330 331 3.345808 GCTCGTTGCGGCTGAACA 61.346 61.111 0.00 0.00 0.00 3.18
331 332 4.090057 GGCTCGTTGCGGCTGAAC 62.090 66.667 0.00 0.00 44.05 3.18
353 354 4.406173 ACAGGACGCGCTCGACTG 62.406 66.667 18.64 18.64 43.82 3.51
354 355 4.406173 CACAGGACGCGCTCGACT 62.406 66.667 5.73 0.00 39.41 4.18
362 363 4.681978 ACCCTTCGCACAGGACGC 62.682 66.667 0.00 0.00 35.71 5.19
363 364 2.432628 GACCCTTCGCACAGGACG 60.433 66.667 0.00 0.00 35.71 4.79
364 365 0.741221 GATGACCCTTCGCACAGGAC 60.741 60.000 0.00 0.00 35.71 3.85
365 366 1.596934 GATGACCCTTCGCACAGGA 59.403 57.895 0.00 0.00 35.71 3.86
366 367 1.450312 GGATGACCCTTCGCACAGG 60.450 63.158 0.00 0.00 0.00 4.00
367 368 1.599047 AGGATGACCCTTCGCACAG 59.401 57.895 0.00 0.00 44.85 3.66
368 369 3.805928 AGGATGACCCTTCGCACA 58.194 55.556 0.00 0.00 44.85 4.57
376 377 1.937546 CTGCGGCAAAAGGATGACCC 61.938 60.000 3.44 0.00 36.73 4.46
377 378 0.960364 TCTGCGGCAAAAGGATGACC 60.960 55.000 3.44 0.00 0.00 4.02
378 379 0.881118 TTCTGCGGCAAAAGGATGAC 59.119 50.000 3.44 0.00 0.00 3.06
379 380 1.473677 CATTCTGCGGCAAAAGGATGA 59.526 47.619 3.44 0.00 31.93 2.92
380 381 1.917273 CATTCTGCGGCAAAAGGATG 58.083 50.000 3.44 0.00 0.00 3.51
381 382 0.174162 GCATTCTGCGGCAAAAGGAT 59.826 50.000 4.70 0.00 31.71 3.24
382 383 1.586028 GCATTCTGCGGCAAAAGGA 59.414 52.632 4.70 0.00 31.71 3.36
383 384 4.173971 GCATTCTGCGGCAAAAGG 57.826 55.556 3.44 0.00 31.71 3.11
392 393 1.002033 CTCCTATTTGCCGCATTCTGC 60.002 52.381 0.00 0.00 40.69 4.26
393 394 1.002033 GCTCCTATTTGCCGCATTCTG 60.002 52.381 0.00 0.00 0.00 3.02
394 395 1.133976 AGCTCCTATTTGCCGCATTCT 60.134 47.619 0.00 0.00 0.00 2.40
395 396 1.265365 GAGCTCCTATTTGCCGCATTC 59.735 52.381 0.87 0.00 0.00 2.67
396 397 1.312815 GAGCTCCTATTTGCCGCATT 58.687 50.000 0.87 0.00 0.00 3.56
397 398 0.536006 GGAGCTCCTATTTGCCGCAT 60.536 55.000 26.25 0.00 0.00 4.73
398 399 1.153168 GGAGCTCCTATTTGCCGCA 60.153 57.895 26.25 0.00 0.00 5.69
399 400 1.894282 GGGAGCTCCTATTTGCCGC 60.894 63.158 31.36 8.41 35.95 6.53
400 401 1.227973 GGGGAGCTCCTATTTGCCG 60.228 63.158 31.36 0.00 35.95 5.69
401 402 0.553333 AAGGGGAGCTCCTATTTGCC 59.447 55.000 31.36 22.11 35.80 4.52
402 403 3.136626 TCTTAAGGGGAGCTCCTATTTGC 59.863 47.826 31.36 14.00 35.80 3.68
403 404 5.373812 TTCTTAAGGGGAGCTCCTATTTG 57.626 43.478 31.36 19.55 35.80 2.32
404 405 6.410970 GGAATTCTTAAGGGGAGCTCCTATTT 60.411 42.308 31.36 22.95 35.80 1.40
405 406 5.073827 GGAATTCTTAAGGGGAGCTCCTATT 59.926 44.000 31.36 25.65 35.80 1.73
406 407 4.599676 GGAATTCTTAAGGGGAGCTCCTAT 59.400 45.833 31.36 19.48 35.80 2.57
407 408 3.974642 GGAATTCTTAAGGGGAGCTCCTA 59.025 47.826 31.36 14.23 35.80 2.94
408 409 2.780592 GGAATTCTTAAGGGGAGCTCCT 59.219 50.000 31.36 15.33 39.17 3.69
409 410 2.780592 AGGAATTCTTAAGGGGAGCTCC 59.219 50.000 25.59 25.59 0.00 4.70
410 411 3.714280 AGAGGAATTCTTAAGGGGAGCTC 59.286 47.826 4.71 4.71 29.61 4.09
411 412 3.741955 AGAGGAATTCTTAAGGGGAGCT 58.258 45.455 5.23 0.00 29.61 4.09
412 413 4.203226 CAAGAGGAATTCTTAAGGGGAGC 58.797 47.826 5.23 0.00 44.34 4.70
413 414 5.432645 GACAAGAGGAATTCTTAAGGGGAG 58.567 45.833 5.23 0.00 44.34 4.30
414 415 4.227527 GGACAAGAGGAATTCTTAAGGGGA 59.772 45.833 5.23 0.00 44.34 4.81
415 416 4.228438 AGGACAAGAGGAATTCTTAAGGGG 59.772 45.833 5.23 0.00 44.34 4.79
416 417 5.432645 GAGGACAAGAGGAATTCTTAAGGG 58.567 45.833 5.23 0.00 44.34 3.95
417 418 5.112686 CGAGGACAAGAGGAATTCTTAAGG 58.887 45.833 5.23 0.00 44.34 2.69
440 441 4.610333 AGGGGAAAGTTGGGAAATATCAC 58.390 43.478 0.00 0.00 0.00 3.06
444 445 4.107311 ACAAGAGGGGAAAGTTGGGAAATA 59.893 41.667 0.00 0.00 0.00 1.40
845 912 9.767228 AATCAGATCATTCAAGTAGATCAAGAG 57.233 33.333 0.00 0.00 40.39 2.85
931 1002 6.417327 CGAGCAACTCAAGCTTCATATTTAG 58.583 40.000 0.00 0.00 43.58 1.85
1069 1140 2.158475 TGACAGACTTTTGCTTGGGGAT 60.158 45.455 0.00 0.00 0.00 3.85
1203 1274 9.944376 CCGAATCAAATTAATAAGAGGGAGATA 57.056 33.333 0.00 0.00 0.00 1.98
1204 1275 8.440771 ACCGAATCAAATTAATAAGAGGGAGAT 58.559 33.333 0.00 0.00 0.00 2.75
1285 1356 2.433145 CACATCAGCGGCTGTCGT 60.433 61.111 27.63 21.88 41.72 4.34
1287 1358 1.153568 TAGCACATCAGCGGCTGTC 60.154 57.895 27.63 13.48 38.55 3.51
1288 1359 1.448540 GTAGCACATCAGCGGCTGT 60.449 57.895 27.63 13.66 38.55 4.40
1524 1597 1.268539 GGTGTCGACAGCAAACAAAGG 60.269 52.381 35.80 0.00 43.34 3.11
1527 1600 1.013596 CAGGTGTCGACAGCAAACAA 58.986 50.000 39.70 7.19 46.03 2.83
1549 1622 6.239008 GCTTATGATTATGCTGCCTACCAAAA 60.239 38.462 0.00 0.00 0.00 2.44
1615 1689 1.275291 CAGCTCTTCCGGTAACTCCAA 59.725 52.381 0.00 0.00 35.57 3.53
1626 1700 2.869233 TGTTTGCAAACAGCTCTTCC 57.131 45.000 35.10 11.67 43.45 3.46
1704 1778 1.768275 TGCTTCAGGTCTCTTCCACAA 59.232 47.619 0.00 0.00 0.00 3.33
1759 1833 4.978099 ACGGATTTCATCTGATAGGCATT 58.022 39.130 0.00 0.00 39.01 3.56
1760 1834 4.564406 GGACGGATTTCATCTGATAGGCAT 60.564 45.833 0.00 0.00 39.01 4.40
1761 1835 3.244215 GGACGGATTTCATCTGATAGGCA 60.244 47.826 0.00 0.00 39.01 4.75
1768 1842 3.193263 CTGACAGGACGGATTTCATCTG 58.807 50.000 0.00 0.00 41.49 2.90
1862 1939 1.669760 TGACAATGAACCCGGCGAC 60.670 57.895 9.30 0.00 0.00 5.19
2217 2323 5.046950 TGGCCAAACCCATTAATTCTAACAC 60.047 40.000 0.61 0.00 37.83 3.32
2238 2344 2.747396 TTTCTGGAAATGCACATGGC 57.253 45.000 0.00 0.00 45.13 4.40
2319 2425 3.311110 GGTCTCACGCCACCTCCA 61.311 66.667 0.00 0.00 0.00 3.86
2320 2426 3.311110 TGGTCTCACGCCACCTCC 61.311 66.667 0.00 0.00 33.36 4.30
2325 2431 1.669440 GTAAGGTGGTCTCACGCCA 59.331 57.895 0.00 0.00 44.50 5.69
2326 2432 1.079336 GGTAAGGTGGTCTCACGCC 60.079 63.158 0.00 0.00 44.50 5.68
2328 2434 0.682852 TTGGGTAAGGTGGTCTCACG 59.317 55.000 0.00 0.00 44.50 4.35
2329 2435 2.943036 TTTGGGTAAGGTGGTCTCAC 57.057 50.000 0.00 0.00 42.91 3.51
2330 2436 3.955524 TTTTTGGGTAAGGTGGTCTCA 57.044 42.857 0.00 0.00 0.00 3.27
2331 2437 3.056821 GCATTTTTGGGTAAGGTGGTCTC 60.057 47.826 0.00 0.00 0.00 3.36
2334 2440 2.970987 AGCATTTTTGGGTAAGGTGGT 58.029 42.857 0.00 0.00 0.00 4.16
2335 2441 4.314961 GAAAGCATTTTTGGGTAAGGTGG 58.685 43.478 0.00 0.00 39.27 4.61
2336 2442 3.987220 CGAAAGCATTTTTGGGTAAGGTG 59.013 43.478 0.00 0.00 39.27 4.00
2337 2443 4.251543 CGAAAGCATTTTTGGGTAAGGT 57.748 40.909 0.00 0.00 39.27 3.50
2373 2479 4.351192 GAGTGTTGTTGATCGTTGCTTTT 58.649 39.130 0.00 0.00 0.00 2.27
2394 2510 0.108233 GGGGTATGCGTTTGTACCGA 60.108 55.000 0.00 0.00 41.01 4.69
2408 2524 2.111460 GTGCGTGTTGTGGGGGTA 59.889 61.111 0.00 0.00 0.00 3.69
2435 2566 4.846040 CCTAGCGTCTATGTATCCTACCT 58.154 47.826 0.00 0.00 0.00 3.08
2436 2567 3.377798 GCCTAGCGTCTATGTATCCTACC 59.622 52.174 0.00 0.00 0.00 3.18
2437 2568 4.008330 TGCCTAGCGTCTATGTATCCTAC 58.992 47.826 0.00 0.00 0.00 3.18
2438 2569 4.262617 CTGCCTAGCGTCTATGTATCCTA 58.737 47.826 0.00 0.00 0.00 2.94
2439 2570 3.085533 CTGCCTAGCGTCTATGTATCCT 58.914 50.000 0.00 0.00 0.00 3.24
2440 2571 2.164624 CCTGCCTAGCGTCTATGTATCC 59.835 54.545 0.00 0.00 0.00 2.59
2441 2572 3.082548 TCCTGCCTAGCGTCTATGTATC 58.917 50.000 0.00 0.00 0.00 2.24
2442 2573 3.156288 TCCTGCCTAGCGTCTATGTAT 57.844 47.619 0.00 0.00 0.00 2.29
2443 2574 2.651382 TCCTGCCTAGCGTCTATGTA 57.349 50.000 0.00 0.00 0.00 2.29
2444 2575 2.002505 ATCCTGCCTAGCGTCTATGT 57.997 50.000 0.00 0.00 0.00 2.29
2445 2576 2.820197 TGTATCCTGCCTAGCGTCTATG 59.180 50.000 0.00 0.00 0.00 2.23
2446 2577 3.156288 TGTATCCTGCCTAGCGTCTAT 57.844 47.619 0.00 0.00 0.00 1.98
2447 2578 2.651382 TGTATCCTGCCTAGCGTCTA 57.349 50.000 0.00 0.00 0.00 2.59
2448 2579 1.776662 TTGTATCCTGCCTAGCGTCT 58.223 50.000 0.00 0.00 0.00 4.18
2449 2580 2.100916 TCTTTGTATCCTGCCTAGCGTC 59.899 50.000 0.00 0.00 0.00 5.19
2450 2581 2.108168 TCTTTGTATCCTGCCTAGCGT 58.892 47.619 0.00 0.00 0.00 5.07
2451 2582 2.474816 GTCTTTGTATCCTGCCTAGCG 58.525 52.381 0.00 0.00 0.00 4.26
2452 2583 2.474816 CGTCTTTGTATCCTGCCTAGC 58.525 52.381 0.00 0.00 0.00 3.42
2453 2584 2.101582 AGCGTCTTTGTATCCTGCCTAG 59.898 50.000 0.00 0.00 0.00 3.02
2454 2585 2.108168 AGCGTCTTTGTATCCTGCCTA 58.892 47.619 0.00 0.00 0.00 3.93
2501 2632 2.901042 CCCCGGGCTACTCTTGTC 59.099 66.667 17.73 0.00 0.00 3.18
2538 2669 1.081175 GGCTTCACTTCTTTGCGGC 60.081 57.895 0.00 0.00 0.00 6.53
2570 2701 4.394712 CGCCGTCTTGGAGCCCTT 62.395 66.667 0.00 0.00 42.00 3.95
2618 2750 2.415010 CTCGGATCAGGCGGTGAG 59.585 66.667 0.00 0.00 39.07 3.51
2619 2751 2.928988 ATCCTCGGATCAGGCGGTGA 62.929 60.000 0.00 0.00 40.38 4.02
2723 2855 6.380274 TGAAAACCTACTCTATCTTCGGATGT 59.620 38.462 0.00 0.00 36.01 3.06
2821 2954 2.360350 CCGTGGATTGGTGCTGCT 60.360 61.111 0.00 0.00 0.00 4.24
2839 2972 2.124403 GGTGCTCATGGGCAGAGG 60.124 66.667 23.56 0.00 43.25 3.69
2859 2992 1.852157 TGGCCCTGGTGATGGTTCT 60.852 57.895 0.00 0.00 0.00 3.01
2920 3053 2.102109 TTTGGTTGAGGTAGCGGCGA 62.102 55.000 12.98 0.00 0.00 5.54
2931 3064 4.459390 TTCCGATCGTATCTTTGGTTGA 57.541 40.909 15.09 0.00 0.00 3.18
2986 3119 1.904771 CCTATTGGGTCTCGGCACA 59.095 57.895 0.00 0.00 0.00 4.57
3010 3143 1.468914 GGTCGATGAAGGCCAGTTTTC 59.531 52.381 5.01 0.00 35.58 2.29
3079 3213 1.545841 ACACGACCATGCTAGTCTCA 58.454 50.000 0.00 0.00 31.83 3.27
3085 3219 0.389296 CCGACAACACGACCATGCTA 60.389 55.000 0.00 0.00 35.09 3.49
3095 3229 3.712881 GTCTGCGCCCGACAACAC 61.713 66.667 18.54 0.00 0.00 3.32
3098 3232 4.717629 CTCGTCTGCGCCCGACAA 62.718 66.667 21.75 7.41 38.14 3.18
3160 3298 4.135153 ATTGCTCGTCTCGCGCCT 62.135 61.111 0.00 0.00 36.73 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.