Multiple sequence alignment - TraesCS2D01G254700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G254700 chr2D 100.000 4845 0 0 1 4845 306631365 306626521 0.000000e+00 8948.0
1 TraesCS2D01G254700 chr2D 88.965 879 86 6 3967 4845 553767548 553766681 0.000000e+00 1075.0
2 TraesCS2D01G254700 chr2D 88.806 804 76 8 3952 4754 460867522 460866732 0.000000e+00 974.0
3 TraesCS2D01G254700 chr2D 87.500 128 12 4 1119 1243 306564228 306564102 1.410000e-30 145.0
4 TraesCS2D01G254700 chr2D 86.139 101 6 5 2 94 603473654 603473754 8.580000e-18 102.0
5 TraesCS2D01G254700 chr2B 90.047 1698 56 36 2195 3882 361127561 361129155 0.000000e+00 2095.0
6 TraesCS2D01G254700 chr2B 90.977 1064 43 13 369 1405 361125500 361126537 0.000000e+00 1384.0
7 TraesCS2D01G254700 chr2B 87.263 895 100 10 3952 4843 243358735 243359618 0.000000e+00 1009.0
8 TraesCS2D01G254700 chr2B 87.554 691 49 18 1461 2117 361126530 361127217 0.000000e+00 765.0
9 TraesCS2D01G254700 chr2B 85.821 134 15 4 1113 1243 361284636 361284768 6.540000e-29 139.0
10 TraesCS2D01G254700 chr2B 92.473 93 7 0 76 168 361125413 361125505 3.040000e-27 134.0
11 TraesCS2D01G254700 chr2A 90.236 1188 52 29 2747 3882 387087292 387086117 0.000000e+00 1493.0
12 TraesCS2D01G254700 chr2A 87.222 1080 87 28 558 1613 387089198 387088146 0.000000e+00 1182.0
13 TraesCS2D01G254700 chr2A 92.079 505 17 12 2211 2703 387087867 387087374 0.000000e+00 689.0
14 TraesCS2D01G254700 chr2A 94.118 153 8 1 1719 1871 387088064 387087913 1.050000e-56 231.0
15 TraesCS2D01G254700 chr2A 92.500 160 11 1 170 329 275929397 275929239 1.360000e-55 228.0
16 TraesCS2D01G254700 chr2A 87.395 119 13 2 1126 1243 387042074 387041957 8.460000e-28 135.0
17 TraesCS2D01G254700 chr2A 93.617 47 3 0 1623 1669 67537599 67537645 2.420000e-08 71.3
18 TraesCS2D01G254700 chr6D 88.591 894 87 7 3954 4845 302631794 302630914 0.000000e+00 1072.0
19 TraesCS2D01G254700 chr6D 91.975 162 12 1 168 329 453001384 453001224 4.880000e-55 226.0
20 TraesCS2D01G254700 chr6D 93.617 94 6 0 1 94 79244013 79243920 1.820000e-29 141.0
21 TraesCS2D01G254700 chr6D 97.101 69 2 0 1 69 454120905 454120973 3.060000e-22 117.0
22 TraesCS2D01G254700 chr7D 88.953 869 84 7 3978 4845 66963541 66964398 0.000000e+00 1062.0
23 TraesCS2D01G254700 chr7D 87.165 896 95 10 3952 4845 616482351 616483228 0.000000e+00 1000.0
24 TraesCS2D01G254700 chr7D 85.906 894 101 13 3952 4843 489109483 489110353 0.000000e+00 929.0
25 TraesCS2D01G254700 chr7D 98.571 70 1 0 1 70 550551147 550551078 1.830000e-24 124.0
26 TraesCS2D01G254700 chr7D 90.909 88 6 2 1 87 568468091 568468005 3.060000e-22 117.0
27 TraesCS2D01G254700 chr5D 86.927 895 102 10 3952 4845 430529772 430530652 0.000000e+00 990.0
28 TraesCS2D01G254700 chr5D 85.317 899 104 18 3950 4845 462289131 462290004 0.000000e+00 904.0
29 TraesCS2D01G254700 chr5D 90.419 167 15 1 163 329 517310655 517310490 8.160000e-53 219.0
30 TraesCS2D01G254700 chr5D 97.143 70 2 0 1 70 347680124 347680055 8.520000e-23 119.0
31 TraesCS2D01G254700 chr7A 92.025 163 12 1 167 329 580661162 580661001 1.360000e-55 228.0
32 TraesCS2D01G254700 chr7A 79.006 181 30 7 1942 2116 580475371 580475549 3.060000e-22 117.0
33 TraesCS2D01G254700 chr7B 90.230 174 15 2 157 329 393400876 393400704 4.880000e-55 226.0
34 TraesCS2D01G254700 chr7B 91.463 164 13 1 166 329 595441890 595442052 1.750000e-54 224.0
35 TraesCS2D01G254700 chr7B 95.833 48 2 0 1622 1669 512694443 512694490 1.450000e-10 78.7
36 TraesCS2D01G254700 chr1D 91.463 164 13 1 166 329 180851742 180851580 1.750000e-54 224.0
37 TraesCS2D01G254700 chr1D 88.889 54 6 0 1614 1667 194471480 194471427 3.130000e-07 67.6
38 TraesCS2D01G254700 chr5B 91.875 160 12 1 170 329 12846525 12846367 6.310000e-54 222.0
39 TraesCS2D01G254700 chr5B 90.698 43 4 0 1623 1665 102629456 102629498 1.880000e-04 58.4
40 TraesCS2D01G254700 chr4D 91.875 160 12 1 170 329 7595569 7595727 6.310000e-54 222.0
41 TraesCS2D01G254700 chr5A 94.624 93 5 0 2 94 11374745 11374837 1.410000e-30 145.0
42 TraesCS2D01G254700 chr6A 94.048 84 3 2 1 82 153681729 153681646 5.090000e-25 126.0
43 TraesCS2D01G254700 chr1B 94.737 76 2 2 1 74 122731060 122730985 3.060000e-22 117.0
44 TraesCS2D01G254700 chr1B 88.889 54 6 0 1614 1667 271891001 271891054 3.130000e-07 67.6
45 TraesCS2D01G254700 chr3A 93.750 48 3 0 1621 1668 32122350 32122397 6.730000e-09 73.1
46 TraesCS2D01G254700 chr3A 92.000 50 4 0 1619 1668 494040322 494040273 2.420000e-08 71.3
47 TraesCS2D01G254700 chrUn 87.500 56 5 2 1615 1670 89026271 89026218 4.050000e-06 63.9
48 TraesCS2D01G254700 chr4B 96.774 31 1 0 68 98 294608534 294608564 9.000000e-03 52.8
49 TraesCS2D01G254700 chr1A 100.000 28 0 0 67 94 57765596 57765623 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G254700 chr2D 306626521 306631365 4844 True 8948.00 8948 100.00000 1 4845 1 chr2D.!!$R2 4844
1 TraesCS2D01G254700 chr2D 553766681 553767548 867 True 1075.00 1075 88.96500 3967 4845 1 chr2D.!!$R4 878
2 TraesCS2D01G254700 chr2D 460866732 460867522 790 True 974.00 974 88.80600 3952 4754 1 chr2D.!!$R3 802
3 TraesCS2D01G254700 chr2B 361125413 361129155 3742 False 1094.50 2095 90.26275 76 3882 4 chr2B.!!$F3 3806
4 TraesCS2D01G254700 chr2B 243358735 243359618 883 False 1009.00 1009 87.26300 3952 4843 1 chr2B.!!$F1 891
5 TraesCS2D01G254700 chr2A 387086117 387089198 3081 True 898.75 1493 90.91375 558 3882 4 chr2A.!!$R3 3324
6 TraesCS2D01G254700 chr6D 302630914 302631794 880 True 1072.00 1072 88.59100 3954 4845 1 chr6D.!!$R2 891
7 TraesCS2D01G254700 chr7D 66963541 66964398 857 False 1062.00 1062 88.95300 3978 4845 1 chr7D.!!$F1 867
8 TraesCS2D01G254700 chr7D 616482351 616483228 877 False 1000.00 1000 87.16500 3952 4845 1 chr7D.!!$F3 893
9 TraesCS2D01G254700 chr7D 489109483 489110353 870 False 929.00 929 85.90600 3952 4843 1 chr7D.!!$F2 891
10 TraesCS2D01G254700 chr5D 430529772 430530652 880 False 990.00 990 86.92700 3952 4845 1 chr5D.!!$F1 893
11 TraesCS2D01G254700 chr5D 462289131 462290004 873 False 904.00 904 85.31700 3950 4845 1 chr5D.!!$F2 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 478 0.031857 CTCTGCATCTCCGTAGCCTG 59.968 60.0 0.00 0.00 0.00 4.85 F
785 824 0.105964 CCGCCAATTGTCTCCGGATA 59.894 55.0 3.57 0.00 41.34 2.59 F
1454 1513 0.105039 TGCGTCATGTGTGTGTGGTA 59.895 50.0 0.00 0.00 0.00 3.25 F
1864 1944 0.102481 ATACGGCACAGCGGTAAGAG 59.898 55.0 12.33 0.00 44.79 2.85 F
1967 2067 0.179078 GGCTCCTGTGCTCAGATGAG 60.179 60.0 17.19 15.43 43.76 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1494 0.105039 TACCACACACACATGACGCA 59.895 50.000 0.00 0.00 0.00 5.24 R
1643 1723 0.867746 TGCACTAAAGCTGCGACAAG 59.132 50.000 0.00 0.00 37.46 3.16 R
3026 3451 1.348036 AGGCTGTAGTTCACCTGGTTC 59.652 52.381 0.00 0.00 0.00 3.62 R
3651 4131 0.670854 GAGAGACACCTGAAACCGCC 60.671 60.000 0.00 0.00 0.00 6.13 R
3886 4366 0.037697 GCTCATGTGGACGTACACCA 60.038 55.000 27.68 16.01 40.62 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.871238 TGTCCTAAAATTTCTAGATGTACACTC 57.129 33.333 0.00 0.00 0.00 3.51
55 56 8.467402 AATTTCTAGATGTACACTCTTCAACG 57.533 34.615 0.00 0.00 0.00 4.10
56 57 5.562506 TCTAGATGTACACTCTTCAACGG 57.437 43.478 0.00 0.00 0.00 4.44
57 58 5.250982 TCTAGATGTACACTCTTCAACGGA 58.749 41.667 0.00 0.00 0.00 4.69
58 59 4.175787 AGATGTACACTCTTCAACGGAC 57.824 45.455 0.00 0.00 0.00 4.79
59 60 2.410785 TGTACACTCTTCAACGGACG 57.589 50.000 0.00 0.00 0.00 4.79
60 61 1.001048 TGTACACTCTTCAACGGACGG 60.001 52.381 0.00 0.00 0.00 4.79
61 62 1.267806 GTACACTCTTCAACGGACGGA 59.732 52.381 0.00 0.00 0.00 4.69
62 63 0.314302 ACACTCTTCAACGGACGGAG 59.686 55.000 0.00 0.00 32.57 4.63
63 64 0.388649 CACTCTTCAACGGACGGAGG 60.389 60.000 0.00 0.00 31.35 4.30
64 65 1.215647 CTCTTCAACGGACGGAGGG 59.784 63.158 0.00 0.00 0.00 4.30
65 66 1.228644 TCTTCAACGGACGGAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
66 67 1.215647 CTTCAACGGACGGAGGGAG 59.784 63.158 0.00 0.00 0.00 4.30
67 68 1.532316 TTCAACGGACGGAGGGAGT 60.532 57.895 0.00 0.00 0.00 3.85
68 69 0.251297 TTCAACGGACGGAGGGAGTA 60.251 55.000 0.00 0.00 0.00 2.59
69 70 0.679002 TCAACGGACGGAGGGAGTAG 60.679 60.000 0.00 0.00 0.00 2.57
70 71 0.679002 CAACGGACGGAGGGAGTAGA 60.679 60.000 0.00 0.00 0.00 2.59
71 72 0.679321 AACGGACGGAGGGAGTAGAC 60.679 60.000 0.00 0.00 0.00 2.59
72 73 1.224039 CGGACGGAGGGAGTAGACT 59.776 63.158 0.00 0.00 0.00 3.24
73 74 0.467384 CGGACGGAGGGAGTAGACTA 59.533 60.000 0.00 0.00 0.00 2.59
74 75 1.540797 CGGACGGAGGGAGTAGACTAG 60.541 61.905 0.00 0.00 0.00 2.57
107 108 6.997476 TGCATGATACTATCCATTACAAGCAA 59.003 34.615 0.00 0.00 30.10 3.91
113 114 9.209175 GATACTATCCATTACAAGCAACCTTAG 57.791 37.037 0.00 0.00 0.00 2.18
115 116 4.650972 TCCATTACAAGCAACCTTAGGT 57.349 40.909 0.00 0.00 37.65 3.08
149 150 1.661480 CCGTTGTGACCCTCGTACA 59.339 57.895 0.00 0.00 0.00 2.90
162 163 3.821600 CCCTCGTACATAGTGCACTCTAT 59.178 47.826 25.56 9.79 0.00 1.98
163 164 5.001874 CCCTCGTACATAGTGCACTCTATA 58.998 45.833 25.56 11.10 0.00 1.31
164 165 5.648526 CCCTCGTACATAGTGCACTCTATAT 59.351 44.000 25.56 8.52 0.00 0.86
165 166 6.822170 CCCTCGTACATAGTGCACTCTATATA 59.178 42.308 25.56 4.62 0.00 0.86
166 167 7.336176 CCCTCGTACATAGTGCACTCTATATAA 59.664 40.741 25.56 3.73 0.00 0.98
167 168 8.727910 CCTCGTACATAGTGCACTCTATATAAA 58.272 37.037 25.56 2.84 0.00 1.40
168 169 9.544314 CTCGTACATAGTGCACTCTATATAAAC 57.456 37.037 25.56 11.09 0.00 2.01
169 170 9.281371 TCGTACATAGTGCACTCTATATAAACT 57.719 33.333 25.56 0.00 0.00 2.66
175 176 7.527568 AGTGCACTCTATATAAACTACTCCC 57.472 40.000 15.25 0.00 0.00 4.30
176 177 7.299134 AGTGCACTCTATATAAACTACTCCCT 58.701 38.462 15.25 0.00 0.00 4.20
177 178 7.449086 AGTGCACTCTATATAAACTACTCCCTC 59.551 40.741 15.25 0.00 0.00 4.30
178 179 6.720288 TGCACTCTATATAAACTACTCCCTCC 59.280 42.308 0.00 0.00 0.00 4.30
179 180 6.720288 GCACTCTATATAAACTACTCCCTCCA 59.280 42.308 0.00 0.00 0.00 3.86
180 181 7.397761 GCACTCTATATAAACTACTCCCTCCAT 59.602 40.741 0.00 0.00 0.00 3.41
181 182 9.315363 CACTCTATATAAACTACTCCCTCCATT 57.685 37.037 0.00 0.00 0.00 3.16
182 183 9.536510 ACTCTATATAAACTACTCCCTCCATTC 57.463 37.037 0.00 0.00 0.00 2.67
183 184 8.896722 TCTATATAAACTACTCCCTCCATTCC 57.103 38.462 0.00 0.00 0.00 3.01
184 185 8.689054 TCTATATAAACTACTCCCTCCATTCCT 58.311 37.037 0.00 0.00 0.00 3.36
185 186 9.992442 CTATATAAACTACTCCCTCCATTCCTA 57.008 37.037 0.00 0.00 0.00 2.94
187 188 9.684702 ATATAAACTACTCCCTCCATTCCTAAA 57.315 33.333 0.00 0.00 0.00 1.85
188 189 6.910259 AAACTACTCCCTCCATTCCTAAAT 57.090 37.500 0.00 0.00 0.00 1.40
189 190 9.684702 ATAAACTACTCCCTCCATTCCTAAATA 57.315 33.333 0.00 0.00 0.00 1.40
190 191 8.582891 AAACTACTCCCTCCATTCCTAAATAT 57.417 34.615 0.00 0.00 0.00 1.28
191 192 9.684702 AAACTACTCCCTCCATTCCTAAATATA 57.315 33.333 0.00 0.00 0.00 0.86
192 193 8.903059 ACTACTCCCTCCATTCCTAAATATAG 57.097 38.462 0.00 0.00 0.00 1.31
237 238 9.577110 ACAAATGACTACATATGAAGCAAAATG 57.423 29.630 10.38 3.10 35.50 2.32
238 239 9.791820 CAAATGACTACATATGAAGCAAAATGA 57.208 29.630 10.38 0.00 35.50 2.57
240 241 8.743085 ATGACTACATATGAAGCAAAATGAGT 57.257 30.769 10.38 0.00 34.71 3.41
241 242 7.977904 TGACTACATATGAAGCAAAATGAGTG 58.022 34.615 10.38 0.00 0.00 3.51
242 243 7.823799 TGACTACATATGAAGCAAAATGAGTGA 59.176 33.333 10.38 0.00 0.00 3.41
243 244 8.565896 ACTACATATGAAGCAAAATGAGTGAA 57.434 30.769 10.38 0.00 0.00 3.18
244 245 9.182214 ACTACATATGAAGCAAAATGAGTGAAT 57.818 29.630 10.38 0.00 0.00 2.57
251 252 9.715121 ATGAAGCAAAATGAGTGAATTTACATT 57.285 25.926 2.93 0.00 34.99 2.71
252 253 9.545105 TGAAGCAAAATGAGTGAATTTACATTT 57.455 25.926 2.93 0.00 42.25 2.32
283 284 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
285 286 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
286 287 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
287 288 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
288 289 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
289 290 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
290 291 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
291 292 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
292 293 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
293 294 5.364446 ACATCCGTATGTGGTAGTCCATTTA 59.636 40.000 0.00 0.00 44.79 1.40
294 295 5.936187 TCCGTATGTGGTAGTCCATTTAA 57.064 39.130 0.00 0.00 46.20 1.52
295 296 6.297080 TCCGTATGTGGTAGTCCATTTAAA 57.703 37.500 0.00 0.00 46.20 1.52
296 297 6.709281 TCCGTATGTGGTAGTCCATTTAAAA 58.291 36.000 0.00 0.00 46.20 1.52
297 298 7.340256 TCCGTATGTGGTAGTCCATTTAAAAT 58.660 34.615 0.00 0.00 46.20 1.82
298 299 7.496591 TCCGTATGTGGTAGTCCATTTAAAATC 59.503 37.037 0.00 0.00 46.20 2.17
299 300 7.497909 CCGTATGTGGTAGTCCATTTAAAATCT 59.502 37.037 0.00 0.00 46.20 2.40
300 301 8.889717 CGTATGTGGTAGTCCATTTAAAATCTT 58.110 33.333 0.00 0.00 46.20 2.40
340 341 8.608844 ATTTAGGAACGGAGAAAATATAGCAG 57.391 34.615 0.00 0.00 0.00 4.24
341 342 5.871396 AGGAACGGAGAAAATATAGCAGA 57.129 39.130 0.00 0.00 0.00 4.26
342 343 6.426646 AGGAACGGAGAAAATATAGCAGAT 57.573 37.500 0.00 0.00 0.00 2.90
343 344 6.226787 AGGAACGGAGAAAATATAGCAGATG 58.773 40.000 0.00 0.00 0.00 2.90
344 345 5.409826 GGAACGGAGAAAATATAGCAGATGG 59.590 44.000 0.00 0.00 0.00 3.51
345 346 5.808366 ACGGAGAAAATATAGCAGATGGA 57.192 39.130 0.00 0.00 0.00 3.41
346 347 5.788450 ACGGAGAAAATATAGCAGATGGAG 58.212 41.667 0.00 0.00 0.00 3.86
347 348 5.305644 ACGGAGAAAATATAGCAGATGGAGT 59.694 40.000 0.00 0.00 0.00 3.85
348 349 6.183361 ACGGAGAAAATATAGCAGATGGAGTT 60.183 38.462 0.00 0.00 0.00 3.01
349 350 6.146837 CGGAGAAAATATAGCAGATGGAGTTG 59.853 42.308 0.00 0.00 0.00 3.16
350 351 6.429385 GGAGAAAATATAGCAGATGGAGTTGG 59.571 42.308 0.00 0.00 0.00 3.77
351 352 7.141758 AGAAAATATAGCAGATGGAGTTGGA 57.858 36.000 0.00 0.00 0.00 3.53
352 353 7.577303 AGAAAATATAGCAGATGGAGTTGGAA 58.423 34.615 0.00 0.00 0.00 3.53
353 354 7.500559 AGAAAATATAGCAGATGGAGTTGGAAC 59.499 37.037 0.00 0.00 0.00 3.62
354 355 5.894298 ATATAGCAGATGGAGTTGGAACA 57.106 39.130 0.00 0.00 0.00 3.18
355 356 4.785346 ATAGCAGATGGAGTTGGAACAT 57.215 40.909 0.00 0.00 39.30 2.71
356 357 5.894298 ATAGCAGATGGAGTTGGAACATA 57.106 39.130 0.00 0.00 39.30 2.29
357 358 4.785346 AGCAGATGGAGTTGGAACATAT 57.215 40.909 0.00 0.00 39.30 1.78
358 359 4.458397 AGCAGATGGAGTTGGAACATATG 58.542 43.478 0.00 0.00 39.30 1.78
359 360 4.080129 AGCAGATGGAGTTGGAACATATGT 60.080 41.667 1.41 1.41 39.30 2.29
360 361 4.036027 GCAGATGGAGTTGGAACATATGTG 59.964 45.833 9.63 0.00 39.30 3.21
361 362 5.430886 CAGATGGAGTTGGAACATATGTGA 58.569 41.667 9.63 0.00 39.30 3.58
362 363 6.060136 CAGATGGAGTTGGAACATATGTGAT 58.940 40.000 9.63 0.00 39.30 3.06
363 364 6.204301 CAGATGGAGTTGGAACATATGTGATC 59.796 42.308 9.63 3.97 39.30 2.92
364 365 5.434182 TGGAGTTGGAACATATGTGATCA 57.566 39.130 9.63 5.59 39.30 2.92
365 366 6.005066 TGGAGTTGGAACATATGTGATCAT 57.995 37.500 9.63 0.00 39.30 2.45
366 367 6.425735 TGGAGTTGGAACATATGTGATCATT 58.574 36.000 9.63 0.00 39.30 2.57
367 368 6.543465 TGGAGTTGGAACATATGTGATCATTC 59.457 38.462 9.63 1.64 39.30 2.67
437 438 3.500448 TGTTGAAGGCCAGAACATGTA 57.500 42.857 5.01 0.00 0.00 2.29
446 447 4.413520 AGGCCAGAACATGTATACATCCTT 59.586 41.667 15.60 9.78 33.61 3.36
477 478 0.031857 CTCTGCATCTCCGTAGCCTG 59.968 60.000 0.00 0.00 0.00 4.85
508 509 6.025539 TCTATGTTCATGCCCCTATACTCAT 58.974 40.000 0.00 0.00 0.00 2.90
512 513 4.623932 TCATGCCCCTATACTCATTGTC 57.376 45.455 0.00 0.00 0.00 3.18
513 514 3.327757 TCATGCCCCTATACTCATTGTCC 59.672 47.826 0.00 0.00 0.00 4.02
522 523 6.649557 CCCTATACTCATTGTCCGGATTTTAC 59.350 42.308 7.81 0.00 0.00 2.01
529 530 1.916874 TGTCCGGATTTTACCCATGGA 59.083 47.619 15.22 0.00 0.00 3.41
554 555 1.410882 AGCGTAGAAGATTCCTGCTCC 59.589 52.381 0.00 0.00 29.05 4.70
683 701 1.766143 CGGCTCCGAAACATAGCTGC 61.766 60.000 1.35 0.00 42.83 5.25
685 703 1.440145 GCTCCGAAACATAGCTGCCC 61.440 60.000 0.00 0.00 33.40 5.36
710 728 2.351726 CGCCTACAACACTAGAATTGGC 59.648 50.000 13.03 0.00 35.02 4.52
767 806 2.869192 GCACAAAGTATCTGAGCTAGCC 59.131 50.000 12.13 3.49 0.00 3.93
768 807 3.119291 CACAAAGTATCTGAGCTAGCCG 58.881 50.000 12.13 0.00 0.00 5.52
769 808 2.131183 CAAAGTATCTGAGCTAGCCGC 58.869 52.381 12.13 4.51 39.57 6.53
770 809 0.676736 AAGTATCTGAGCTAGCCGCC 59.323 55.000 12.13 1.47 40.39 6.13
771 810 0.468214 AGTATCTGAGCTAGCCGCCA 60.468 55.000 12.13 6.50 40.39 5.69
772 811 0.389391 GTATCTGAGCTAGCCGCCAA 59.611 55.000 12.13 0.00 40.39 4.52
773 812 1.001406 GTATCTGAGCTAGCCGCCAAT 59.999 52.381 12.13 1.84 40.39 3.16
774 813 0.471617 ATCTGAGCTAGCCGCCAATT 59.528 50.000 12.13 0.00 40.39 2.32
775 814 0.462581 TCTGAGCTAGCCGCCAATTG 60.463 55.000 12.13 0.00 40.39 2.32
776 815 0.745845 CTGAGCTAGCCGCCAATTGT 60.746 55.000 12.13 0.00 40.39 2.71
777 816 0.744414 TGAGCTAGCCGCCAATTGTC 60.744 55.000 12.13 0.00 40.39 3.18
778 817 0.462759 GAGCTAGCCGCCAATTGTCT 60.463 55.000 12.13 0.00 40.39 3.41
779 818 0.462759 AGCTAGCCGCCAATTGTCTC 60.463 55.000 12.13 0.00 40.39 3.36
780 819 1.440145 GCTAGCCGCCAATTGTCTCC 61.440 60.000 2.29 0.00 0.00 3.71
781 820 1.153449 TAGCCGCCAATTGTCTCCG 60.153 57.895 4.43 1.80 0.00 4.63
782 821 2.587322 TAGCCGCCAATTGTCTCCGG 62.587 60.000 15.45 15.45 41.72 5.14
783 822 2.267642 CCGCCAATTGTCTCCGGA 59.732 61.111 2.93 2.93 41.34 5.14
784 823 1.153168 CCGCCAATTGTCTCCGGAT 60.153 57.895 3.57 0.00 41.34 4.18
785 824 0.105964 CCGCCAATTGTCTCCGGATA 59.894 55.000 3.57 0.00 41.34 2.59
786 825 1.502231 CGCCAATTGTCTCCGGATAG 58.498 55.000 3.57 0.00 0.00 2.08
787 826 1.230324 GCCAATTGTCTCCGGATAGC 58.770 55.000 3.57 0.00 0.00 2.97
788 827 1.202698 GCCAATTGTCTCCGGATAGCT 60.203 52.381 3.57 0.00 0.00 3.32
875 914 3.908103 AGACAAACTAGTTAAGCCCCAGA 59.092 43.478 8.92 0.00 0.00 3.86
978 1022 3.833070 AGCAAAGTACAGTACTAGCTGGT 59.167 43.478 27.49 20.28 43.87 4.00
979 1023 3.927142 GCAAAGTACAGTACTAGCTGGTG 59.073 47.826 22.12 12.29 40.59 4.17
980 1024 4.495422 CAAAGTACAGTACTAGCTGGTGG 58.505 47.826 13.87 4.97 40.59 4.61
1085 1131 2.781158 GGCAGGAGAGGAGAGCGAC 61.781 68.421 0.00 0.00 0.00 5.19
1267 1313 2.538449 ACACTCGTTTCGTCACATGTTC 59.462 45.455 0.00 0.00 0.00 3.18
1271 1317 4.331717 ACTCGTTTCGTCACATGTTCTTTT 59.668 37.500 0.00 0.00 0.00 2.27
1273 1319 5.025190 TCGTTTCGTCACATGTTCTTTTTG 58.975 37.500 0.00 0.00 0.00 2.44
1274 1320 4.791163 CGTTTCGTCACATGTTCTTTTTGT 59.209 37.500 0.00 0.00 0.00 2.83
1275 1321 5.285134 CGTTTCGTCACATGTTCTTTTTGTT 59.715 36.000 0.00 0.00 0.00 2.83
1276 1322 6.466413 CGTTTCGTCACATGTTCTTTTTGTTA 59.534 34.615 0.00 0.00 0.00 2.41
1277 1323 7.007546 CGTTTCGTCACATGTTCTTTTTGTTAA 59.992 33.333 0.00 0.00 0.00 2.01
1300 1346 1.506320 CGTCGCGTACGTGTTAATCTC 59.494 52.381 26.44 9.79 46.72 2.75
1318 1364 4.730949 TCTCGATCCATAGGTTCGTTTT 57.269 40.909 14.11 0.00 43.08 2.43
1336 1388 0.237235 TTTTGCCTCGAACATCACGC 59.763 50.000 0.00 0.00 0.00 5.34
1358 1410 2.864248 GTCGAGACGACGCACGAC 60.864 66.667 19.75 19.75 46.56 4.34
1400 1459 2.134201 AACTTTGCGGCTAAACTTGC 57.866 45.000 0.00 0.00 0.00 4.01
1402 1461 1.269051 ACTTTGCGGCTAAACTTGCAC 60.269 47.619 0.00 0.00 37.01 4.57
1403 1462 1.001378 CTTTGCGGCTAAACTTGCACT 60.001 47.619 0.00 0.00 37.01 4.40
1404 1463 1.885560 TTGCGGCTAAACTTGCACTA 58.114 45.000 0.00 0.00 37.01 2.74
1405 1464 1.438651 TGCGGCTAAACTTGCACTAG 58.561 50.000 0.00 0.00 31.31 2.57
1406 1465 0.727398 GCGGCTAAACTTGCACTAGG 59.273 55.000 0.00 0.00 0.00 3.02
1407 1466 1.944430 GCGGCTAAACTTGCACTAGGT 60.944 52.381 0.00 0.00 0.00 3.08
1408 1467 2.000447 CGGCTAAACTTGCACTAGGTC 59.000 52.381 0.00 0.00 0.00 3.85
1409 1468 2.357075 GGCTAAACTTGCACTAGGTCC 58.643 52.381 0.00 0.00 0.00 4.46
1410 1469 2.000447 GCTAAACTTGCACTAGGTCCG 59.000 52.381 0.00 0.00 0.00 4.79
1414 1473 0.892358 ACTTGCACTAGGTCCGTCGA 60.892 55.000 0.00 0.00 0.00 4.20
1424 1483 0.795735 GGTCCGTCGATGTACACGTG 60.796 60.000 15.48 15.48 34.06 4.49
1426 1485 1.515519 CCGTCGATGTACACGTGGG 60.516 63.158 21.57 3.78 34.06 4.61
1443 1502 4.450122 GCGTGGTGCTGCGTCATG 62.450 66.667 9.07 9.07 41.73 3.07
1447 1506 2.253051 TGGTGCTGCGTCATGTGTG 61.253 57.895 0.00 0.00 0.00 3.82
1448 1507 2.253758 GGTGCTGCGTCATGTGTGT 61.254 57.895 0.00 0.00 0.00 3.72
1449 1508 1.082561 GTGCTGCGTCATGTGTGTG 60.083 57.895 0.00 0.00 0.00 3.82
1450 1509 1.523484 TGCTGCGTCATGTGTGTGT 60.523 52.632 0.00 0.00 0.00 3.72
1451 1510 1.082561 GCTGCGTCATGTGTGTGTG 60.083 57.895 0.00 0.00 0.00 3.82
1454 1513 0.105039 TGCGTCATGTGTGTGTGGTA 59.895 50.000 0.00 0.00 0.00 3.25
1455 1514 0.511221 GCGTCATGTGTGTGTGGTAC 59.489 55.000 0.00 0.00 0.00 3.34
1473 1536 7.705325 GTGTGGTACTACCTACATCTACAATTG 59.295 40.741 6.93 3.24 39.58 2.32
1597 1664 6.713903 CAGTATGATCCAGATTATTTGCCTGT 59.286 38.462 0.00 0.00 39.69 4.00
1631 1711 8.265165 AGAACCGAAAACATATTACTTCCTTC 57.735 34.615 0.00 0.00 0.00 3.46
1638 1718 8.980481 AAAACATATTACTTCCTTCGATCCAT 57.020 30.769 0.00 0.00 0.00 3.41
1650 1730 4.386049 CCTTCGATCCATATTACTTGTCGC 59.614 45.833 0.00 0.00 0.00 5.19
1660 1740 4.928661 ATTACTTGTCGCAGCTTTAGTG 57.071 40.909 0.00 0.00 0.00 2.74
1661 1741 0.868406 ACTTGTCGCAGCTTTAGTGC 59.132 50.000 0.00 0.00 37.58 4.40
1699 1779 4.998051 TGAATCAAAGGAAGTAGGGCTTT 58.002 39.130 0.00 0.00 37.59 3.51
1864 1944 0.102481 ATACGGCACAGCGGTAAGAG 59.898 55.000 12.33 0.00 44.79 2.85
1917 1999 6.183360 TGGCTAAAAATCTCACGGATTGATTC 60.183 38.462 0.00 0.00 43.17 2.52
1934 2016 4.483950 TGATTCCCTAATCATCCGAGTCT 58.516 43.478 0.00 0.00 45.17 3.24
1950 2050 3.365820 CGAGTCTCAAATTGCATTTTGGC 59.634 43.478 25.75 18.30 37.23 4.52
1953 2053 3.681417 GTCTCAAATTGCATTTTGGCTCC 59.319 43.478 25.75 12.92 37.23 4.70
1954 2054 3.579586 TCTCAAATTGCATTTTGGCTCCT 59.420 39.130 25.75 0.00 37.23 3.69
1956 2056 3.071312 TCAAATTGCATTTTGGCTCCTGT 59.929 39.130 25.75 0.00 37.23 4.00
1957 2057 2.754946 ATTGCATTTTGGCTCCTGTG 57.245 45.000 0.00 0.00 34.04 3.66
1967 2067 0.179078 GGCTCCTGTGCTCAGATGAG 60.179 60.000 17.19 15.43 43.76 2.90
1977 2077 2.584418 CAGATGAGCCCGCGAGTG 60.584 66.667 8.23 0.00 0.00 3.51
1986 2086 1.352156 GCCCGCGAGTGAACAGTAAG 61.352 60.000 8.23 0.00 0.00 2.34
2001 2101 5.043189 ACAGTAAGTTCGCCAAAAATAGC 57.957 39.130 0.00 0.00 0.00 2.97
2004 2104 5.342259 CAGTAAGTTCGCCAAAAATAGCAAC 59.658 40.000 0.00 0.00 0.00 4.17
2005 2105 4.584327 AAGTTCGCCAAAAATAGCAACT 57.416 36.364 0.00 0.00 34.24 3.16
2006 2106 4.584327 AGTTCGCCAAAAATAGCAACTT 57.416 36.364 0.00 0.00 31.08 2.66
2010 2113 6.981559 AGTTCGCCAAAAATAGCAACTTTTTA 59.018 30.769 4.11 0.00 34.83 1.52
2013 2116 7.846485 TCGCCAAAAATAGCAACTTTTTAAAG 58.154 30.769 0.80 0.80 41.73 1.85
2098 2201 5.504337 GCATTTCAACATCTGATGAGCTCTC 60.504 44.000 23.59 10.43 32.78 3.20
2101 2204 3.132467 TCAACATCTGATGAGCTCTCAGG 59.868 47.826 28.01 20.43 43.61 3.86
2102 2205 3.029483 ACATCTGATGAGCTCTCAGGA 57.971 47.619 28.01 20.09 43.61 3.86
2103 2206 2.694628 ACATCTGATGAGCTCTCAGGAC 59.305 50.000 28.01 11.80 43.61 3.85
2109 2212 2.847327 TGAGCTCTCAGGACAAAAGG 57.153 50.000 16.19 0.00 34.14 3.11
2117 2220 3.253188 TCTCAGGACAAAAGGCAAATTCG 59.747 43.478 0.00 0.00 0.00 3.34
2118 2221 3.218453 TCAGGACAAAAGGCAAATTCGA 58.782 40.909 0.00 0.00 0.00 3.71
2123 2418 6.473455 CAGGACAAAAGGCAAATTCGATATTC 59.527 38.462 0.00 0.00 0.00 1.75
2162 2457 3.511477 AGTTCACAGGGTGTAGATGAGT 58.489 45.455 0.00 0.00 34.79 3.41
2165 2460 3.506398 TCACAGGGTGTAGATGAGTTCA 58.494 45.455 0.00 0.00 34.79 3.18
2172 2467 2.763448 GTGTAGATGAGTTCAGGAGCCT 59.237 50.000 0.00 0.00 0.00 4.58
2176 2471 4.686191 AGATGAGTTCAGGAGCCTAATG 57.314 45.455 0.00 0.00 0.00 1.90
2184 2479 5.013599 AGTTCAGGAGCCTAATGGGATATTC 59.986 44.000 0.00 0.00 37.23 1.75
2233 2606 5.780793 AGTAAGTCTTATGTCTTGTGTCCCT 59.219 40.000 0.00 0.00 0.00 4.20
2297 2670 4.369182 GAGAGTACGTAAACCATCCCATG 58.631 47.826 0.00 0.00 0.00 3.66
2298 2671 2.870411 GAGTACGTAAACCATCCCATGC 59.130 50.000 0.00 0.00 0.00 4.06
2299 2672 2.237643 AGTACGTAAACCATCCCATGCA 59.762 45.455 0.00 0.00 0.00 3.96
2300 2673 2.435372 ACGTAAACCATCCCATGCAT 57.565 45.000 0.00 0.00 0.00 3.96
2303 2676 2.291465 CGTAAACCATCCCATGCATCAG 59.709 50.000 0.00 0.00 0.00 2.90
2315 2688 4.261867 CCCATGCATCAGTTGTCCATAATG 60.262 45.833 0.00 0.00 0.00 1.90
2316 2689 4.581409 CCATGCATCAGTTGTCCATAATGA 59.419 41.667 0.00 0.00 0.00 2.57
2317 2690 5.278315 CCATGCATCAGTTGTCCATAATGAG 60.278 44.000 0.00 0.00 0.00 2.90
2318 2691 4.847198 TGCATCAGTTGTCCATAATGAGT 58.153 39.130 0.00 0.00 0.00 3.41
2319 2692 5.988287 TGCATCAGTTGTCCATAATGAGTA 58.012 37.500 0.00 0.00 0.00 2.59
2320 2693 6.594744 TGCATCAGTTGTCCATAATGAGTAT 58.405 36.000 0.00 0.00 0.00 2.12
2321 2694 7.056006 TGCATCAGTTGTCCATAATGAGTATT 58.944 34.615 0.00 0.00 0.00 1.89
2322 2695 7.557358 TGCATCAGTTGTCCATAATGAGTATTT 59.443 33.333 0.00 0.00 0.00 1.40
2332 2705 9.429359 GTCCATAATGAGTATTTACCATCAGAG 57.571 37.037 0.00 0.00 0.00 3.35
2348 2721 7.373493 ACCATCAGAGATTCAACAAATTTGTC 58.627 34.615 23.47 11.08 41.31 3.18
2351 2724 7.528996 TCAGAGATTCAACAAATTTGTCCAT 57.471 32.000 23.47 15.12 41.31 3.41
2385 2758 6.803154 ATATCGATGACTAGTGATTGACGA 57.197 37.500 13.77 10.15 0.00 4.20
2386 2759 5.697473 ATCGATGACTAGTGATTGACGAT 57.303 39.130 13.77 11.83 34.09 3.73
2387 2760 4.848757 TCGATGACTAGTGATTGACGATG 58.151 43.478 8.08 0.00 0.00 3.84
2388 2761 3.423536 CGATGACTAGTGATTGACGATGC 59.576 47.826 0.00 0.00 0.00 3.91
2389 2762 2.797491 TGACTAGTGATTGACGATGCG 58.203 47.619 0.00 0.00 0.00 4.73
2390 2763 2.163613 TGACTAGTGATTGACGATGCGT 59.836 45.455 0.00 0.00 45.10 5.24
2391 2764 2.530177 ACTAGTGATTGACGATGCGTG 58.470 47.619 0.00 0.00 41.37 5.34
2477 2852 3.964875 ACCAAGTTTGCGGCGCTG 61.965 61.111 33.26 21.44 0.00 5.18
2754 3174 7.627939 GCATGAACAGACTTGATATTCTTGCTT 60.628 37.037 13.01 0.00 42.57 3.91
2851 3271 2.233922 CGGAGTCTCCAACTACAATGGT 59.766 50.000 19.15 0.00 38.98 3.55
2852 3272 3.446161 CGGAGTCTCCAACTACAATGGTA 59.554 47.826 19.15 0.00 38.98 3.25
2853 3273 4.677250 CGGAGTCTCCAACTACAATGGTAC 60.677 50.000 19.15 0.00 38.98 3.34
2859 3279 7.180408 AGTCTCCAACTACAATGGTACTAACAT 59.820 37.037 0.00 0.00 39.09 2.71
2922 3342 8.945481 ATTCATCAGAAGATAACAGTTGAGAG 57.055 34.615 0.00 0.00 37.14 3.20
2923 3343 7.709149 TCATCAGAAGATAACAGTTGAGAGA 57.291 36.000 0.00 0.00 31.88 3.10
2944 3364 6.844388 AGAGATTACCCACTGGATGTATGTAA 59.156 38.462 0.00 0.00 34.81 2.41
2945 3365 6.827727 AGATTACCCACTGGATGTATGTAAC 58.172 40.000 0.00 0.00 31.30 2.50
2953 3378 5.462068 CACTGGATGTATGTAACGTATGGTG 59.538 44.000 0.00 0.00 0.00 4.17
2956 3381 5.127356 TGGATGTATGTAACGTATGGTGTGA 59.873 40.000 0.00 0.00 0.00 3.58
3083 3508 2.048127 GAGAACGGCGTCAAGGCT 60.048 61.111 15.17 6.00 44.22 4.58
3195 3620 7.325660 TGCTCAACTTCTCCATTATTGATTC 57.674 36.000 0.00 0.00 0.00 2.52
3360 3813 4.600062 AGGTGATACCATTTCTGAAACCC 58.400 43.478 4.73 0.00 41.95 4.11
3406 3859 3.318275 GTCCCCTTGACAAGAAAAACTCC 59.682 47.826 16.99 0.00 43.85 3.85
3517 3974 4.568072 TGGAGTAAGCTATGGCAAGAAA 57.432 40.909 3.10 0.00 41.70 2.52
3539 3996 2.486191 CCAACTCAGGTGCTTCAGACTT 60.486 50.000 0.00 0.00 0.00 3.01
3570 4027 2.494073 ACTCATCGTGTTTCCCTCTCTC 59.506 50.000 0.00 0.00 0.00 3.20
3571 4028 1.825474 TCATCGTGTTTCCCTCTCTCC 59.175 52.381 0.00 0.00 0.00 3.71
3572 4029 1.827969 CATCGTGTTTCCCTCTCTCCT 59.172 52.381 0.00 0.00 0.00 3.69
3573 4030 1.546961 TCGTGTTTCCCTCTCTCCTC 58.453 55.000 0.00 0.00 0.00 3.71
3574 4031 1.075698 TCGTGTTTCCCTCTCTCCTCT 59.924 52.381 0.00 0.00 0.00 3.69
3575 4032 1.474879 CGTGTTTCCCTCTCTCCTCTC 59.525 57.143 0.00 0.00 0.00 3.20
3580 4037 4.412199 TGTTTCCCTCTCTCCTCTCAAAAA 59.588 41.667 0.00 0.00 0.00 1.94
3581 4038 4.625607 TTCCCTCTCTCCTCTCAAAAAC 57.374 45.455 0.00 0.00 0.00 2.43
3651 4131 4.701651 TGCAGGAGAGTTTAATGGATTGTG 59.298 41.667 0.00 0.00 0.00 3.33
3754 4234 2.665185 GAGTTCGCCGGTGCACTT 60.665 61.111 21.23 5.66 37.32 3.16
3848 4328 1.416373 CATCGAGGAGTCATGATGCG 58.584 55.000 0.00 0.00 32.68 4.73
3882 4362 6.268825 TGACATCACTTCTACTCTTGTACC 57.731 41.667 0.00 0.00 0.00 3.34
3883 4363 5.773176 TGACATCACTTCTACTCTTGTACCA 59.227 40.000 0.00 0.00 0.00 3.25
3884 4364 6.071896 TGACATCACTTCTACTCTTGTACCAG 60.072 42.308 0.00 0.00 0.00 4.00
3885 4365 5.186021 ACATCACTTCTACTCTTGTACCAGG 59.814 44.000 0.00 0.00 0.00 4.45
3886 4366 4.737578 TCACTTCTACTCTTGTACCAGGT 58.262 43.478 0.00 0.00 0.00 4.00
3887 4367 4.523173 TCACTTCTACTCTTGTACCAGGTG 59.477 45.833 0.76 0.00 0.00 4.00
3888 4368 3.833070 ACTTCTACTCTTGTACCAGGTGG 59.167 47.826 0.76 0.00 42.17 4.61
3898 4378 3.462169 CCAGGTGGTGTACGTCCA 58.538 61.111 0.00 5.63 0.00 4.02
3905 4385 0.037697 TGGTGTACGTCCACATGAGC 60.038 55.000 13.59 0.00 37.06 4.26
3906 4386 0.739813 GGTGTACGTCCACATGAGCC 60.740 60.000 13.59 0.00 37.06 4.70
3907 4387 0.037697 GTGTACGTCCACATGAGCCA 60.038 55.000 6.37 0.00 35.38 4.75
3908 4388 0.901827 TGTACGTCCACATGAGCCAT 59.098 50.000 0.00 0.00 0.00 4.40
3909 4389 1.134818 TGTACGTCCACATGAGCCATC 60.135 52.381 0.00 0.00 0.00 3.51
3910 4390 0.102300 TACGTCCACATGAGCCATCG 59.898 55.000 0.00 0.00 0.00 3.84
3911 4391 2.528743 CGTCCACATGAGCCATCGC 61.529 63.158 0.00 0.00 0.00 4.58
3912 4392 2.202919 TCCACATGAGCCATCGCG 60.203 61.111 0.00 0.00 41.18 5.87
3913 4393 2.202919 CCACATGAGCCATCGCGA 60.203 61.111 13.09 13.09 41.18 5.87
3914 4394 2.528743 CCACATGAGCCATCGCGAC 61.529 63.158 12.93 0.00 41.18 5.19
3915 4395 2.202932 ACATGAGCCATCGCGACC 60.203 61.111 12.93 2.49 41.18 4.79
3916 4396 2.969238 CATGAGCCATCGCGACCC 60.969 66.667 12.93 2.05 41.18 4.46
3917 4397 4.241555 ATGAGCCATCGCGACCCC 62.242 66.667 12.93 1.62 41.18 4.95
3919 4399 4.241555 GAGCCATCGCGACCCCAT 62.242 66.667 12.93 0.00 41.18 4.00
3920 4400 4.552365 AGCCATCGCGACCCCATG 62.552 66.667 12.93 5.07 41.18 3.66
3921 4401 4.856801 GCCATCGCGACCCCATGT 62.857 66.667 12.93 0.00 0.00 3.21
3922 4402 2.818841 CCATCGCGACCCCATGTA 59.181 61.111 12.93 0.00 0.00 2.29
3923 4403 1.300931 CCATCGCGACCCCATGTAG 60.301 63.158 12.93 0.00 0.00 2.74
3924 4404 1.441729 CATCGCGACCCCATGTAGT 59.558 57.895 12.93 0.00 0.00 2.73
3925 4405 0.671796 CATCGCGACCCCATGTAGTA 59.328 55.000 12.93 0.00 0.00 1.82
3926 4406 0.672342 ATCGCGACCCCATGTAGTAC 59.328 55.000 12.93 0.00 0.00 2.73
3927 4407 0.680601 TCGCGACCCCATGTAGTACA 60.681 55.000 3.71 5.24 0.00 2.90
3928 4408 0.173935 CGCGACCCCATGTAGTACAA 59.826 55.000 7.16 0.00 0.00 2.41
3929 4409 1.648504 GCGACCCCATGTAGTACAAC 58.351 55.000 7.16 0.00 0.00 3.32
3930 4410 1.066716 GCGACCCCATGTAGTACAACA 60.067 52.381 7.16 0.00 0.00 3.33
3931 4411 2.613474 GCGACCCCATGTAGTACAACAA 60.613 50.000 7.16 0.00 32.02 2.83
3932 4412 3.259064 CGACCCCATGTAGTACAACAAG 58.741 50.000 7.16 0.00 32.02 3.16
3933 4413 3.306502 CGACCCCATGTAGTACAACAAGT 60.307 47.826 7.16 3.26 32.02 3.16
3934 4414 4.082081 CGACCCCATGTAGTACAACAAGTA 60.082 45.833 7.16 0.00 32.02 2.24
3935 4415 5.416271 ACCCCATGTAGTACAACAAGTAG 57.584 43.478 7.16 0.00 32.19 2.57
3936 4416 5.088730 ACCCCATGTAGTACAACAAGTAGA 58.911 41.667 7.16 0.00 32.19 2.59
3937 4417 5.724854 ACCCCATGTAGTACAACAAGTAGAT 59.275 40.000 7.16 0.00 32.19 1.98
3938 4418 6.049149 CCCCATGTAGTACAACAAGTAGATG 58.951 44.000 7.16 0.00 32.19 2.90
3939 4419 6.351881 CCCCATGTAGTACAACAAGTAGATGT 60.352 42.308 7.16 0.00 37.06 3.06
3940 4420 7.147794 CCCCATGTAGTACAACAAGTAGATGTA 60.148 40.741 7.16 0.00 34.76 2.29
3941 4421 7.921214 CCCATGTAGTACAACAAGTAGATGTAG 59.079 40.741 7.16 0.00 36.34 2.74
3942 4422 8.683615 CCATGTAGTACAACAAGTAGATGTAGA 58.316 37.037 7.16 0.00 36.34 2.59
4024 4504 4.043168 CGGACACAAAAGTCGGCT 57.957 55.556 0.00 0.00 39.42 5.52
4025 4505 3.204505 CGGACACAAAAGTCGGCTA 57.795 52.632 0.00 0.00 39.42 3.93
4034 4514 0.319297 AAAGTCGGCTAAACGCGTCT 60.319 50.000 14.44 0.00 40.44 4.18
4047 4527 1.005867 GCGTCTACCCAAACGGACA 60.006 57.895 0.00 0.00 39.24 4.02
4084 4565 3.727258 CCTGCCGACCCATTCCCA 61.727 66.667 0.00 0.00 0.00 4.37
4132 4613 2.875485 CGGACACGAGATGGACGT 59.125 61.111 0.00 0.00 44.60 4.34
4196 4681 1.133668 CCTCCACCATTTCCCTCCATC 60.134 57.143 0.00 0.00 0.00 3.51
4199 4684 0.630673 CACCATTTCCCTCCATCCCA 59.369 55.000 0.00 0.00 0.00 4.37
4201 4686 0.106015 CCATTTCCCTCCATCCCACC 60.106 60.000 0.00 0.00 0.00 4.61
4202 4687 0.929244 CATTTCCCTCCATCCCACCT 59.071 55.000 0.00 0.00 0.00 4.00
4204 4689 1.591768 TTTCCCTCCATCCCACCTAC 58.408 55.000 0.00 0.00 0.00 3.18
4205 4690 0.327191 TTCCCTCCATCCCACCTACC 60.327 60.000 0.00 0.00 0.00 3.18
4206 4691 1.004230 CCCTCCATCCCACCTACCA 59.996 63.158 0.00 0.00 0.00 3.25
4207 4692 0.623324 CCCTCCATCCCACCTACCAA 60.623 60.000 0.00 0.00 0.00 3.67
4259 4744 3.781307 CCCCTCGCCATGGACGAA 61.781 66.667 24.60 13.29 39.39 3.85
4306 4791 4.896829 CCTCGCCTCCCTCGCCTA 62.897 72.222 0.00 0.00 0.00 3.93
4312 4797 4.896829 CTCCCTCGCCTAGCCCGA 62.897 72.222 4.10 4.10 0.00 5.14
4543 5029 4.619227 CACGGTGGCAACGAGGGT 62.619 66.667 34.02 5.80 42.51 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.871238 GAGTGTACATCTAGAAATTTTAGGACA 57.129 33.333 0.00 0.00 0.00 4.02
29 30 8.926710 CGTTGAAGAGTGTACATCTAGAAATTT 58.073 33.333 0.00 0.00 0.00 1.82
30 31 7.545965 CCGTTGAAGAGTGTACATCTAGAAATT 59.454 37.037 0.00 0.00 0.00 1.82
31 32 7.036220 CCGTTGAAGAGTGTACATCTAGAAAT 58.964 38.462 0.00 0.00 0.00 2.17
32 33 6.208007 TCCGTTGAAGAGTGTACATCTAGAAA 59.792 38.462 0.00 0.00 0.00 2.52
33 34 5.708697 TCCGTTGAAGAGTGTACATCTAGAA 59.291 40.000 0.00 0.00 0.00 2.10
34 35 5.123502 GTCCGTTGAAGAGTGTACATCTAGA 59.876 44.000 0.00 0.00 0.00 2.43
35 36 5.333513 GTCCGTTGAAGAGTGTACATCTAG 58.666 45.833 0.00 0.00 0.00 2.43
36 37 4.142752 CGTCCGTTGAAGAGTGTACATCTA 60.143 45.833 0.00 0.00 0.00 1.98
37 38 3.366070 CGTCCGTTGAAGAGTGTACATCT 60.366 47.826 0.00 0.27 0.00 2.90
38 39 2.915463 CGTCCGTTGAAGAGTGTACATC 59.085 50.000 0.00 0.00 0.00 3.06
39 40 2.352421 CCGTCCGTTGAAGAGTGTACAT 60.352 50.000 0.00 0.00 0.00 2.29
40 41 1.001048 CCGTCCGTTGAAGAGTGTACA 60.001 52.381 0.00 0.00 0.00 2.90
41 42 1.267806 TCCGTCCGTTGAAGAGTGTAC 59.732 52.381 0.00 0.00 0.00 2.90
42 43 1.538512 CTCCGTCCGTTGAAGAGTGTA 59.461 52.381 0.00 0.00 0.00 2.90
43 44 0.314302 CTCCGTCCGTTGAAGAGTGT 59.686 55.000 0.00 0.00 0.00 3.55
44 45 0.388649 CCTCCGTCCGTTGAAGAGTG 60.389 60.000 0.00 0.00 0.00 3.51
45 46 1.533469 CCCTCCGTCCGTTGAAGAGT 61.533 60.000 0.00 0.00 0.00 3.24
46 47 1.215647 CCCTCCGTCCGTTGAAGAG 59.784 63.158 0.00 0.00 0.00 2.85
47 48 1.228644 TCCCTCCGTCCGTTGAAGA 60.229 57.895 0.00 0.00 0.00 2.87
48 49 1.215647 CTCCCTCCGTCCGTTGAAG 59.784 63.158 0.00 0.00 0.00 3.02
49 50 0.251297 TACTCCCTCCGTCCGTTGAA 60.251 55.000 0.00 0.00 0.00 2.69
50 51 0.679002 CTACTCCCTCCGTCCGTTGA 60.679 60.000 0.00 0.00 0.00 3.18
51 52 0.679002 TCTACTCCCTCCGTCCGTTG 60.679 60.000 0.00 0.00 0.00 4.10
52 53 0.679321 GTCTACTCCCTCCGTCCGTT 60.679 60.000 0.00 0.00 0.00 4.44
53 54 1.077858 GTCTACTCCCTCCGTCCGT 60.078 63.158 0.00 0.00 0.00 4.69
54 55 0.467384 TAGTCTACTCCCTCCGTCCG 59.533 60.000 0.00 0.00 0.00 4.79
55 56 1.490069 ACTAGTCTACTCCCTCCGTCC 59.510 57.143 0.00 0.00 0.00 4.79
56 57 4.040217 TGATACTAGTCTACTCCCTCCGTC 59.960 50.000 0.00 0.00 0.00 4.79
57 58 3.972638 TGATACTAGTCTACTCCCTCCGT 59.027 47.826 0.00 0.00 0.00 4.69
58 59 4.620589 TGATACTAGTCTACTCCCTCCG 57.379 50.000 0.00 0.00 0.00 4.63
59 60 6.544564 GCATATGATACTAGTCTACTCCCTCC 59.455 46.154 6.97 0.00 0.00 4.30
60 61 7.113437 TGCATATGATACTAGTCTACTCCCTC 58.887 42.308 6.97 0.00 0.00 4.30
61 62 7.033782 TGCATATGATACTAGTCTACTCCCT 57.966 40.000 6.97 0.00 0.00 4.20
62 63 7.558081 TCATGCATATGATACTAGTCTACTCCC 59.442 40.741 6.97 0.00 38.37 4.30
63 64 8.512966 TCATGCATATGATACTAGTCTACTCC 57.487 38.462 6.97 0.00 38.37 3.85
113 114 0.393132 GGCTGGTCTAAGGCTCAACC 60.393 60.000 6.08 6.08 39.56 3.77
115 116 1.192146 ACGGCTGGTCTAAGGCTCAA 61.192 55.000 0.00 0.00 40.47 3.02
117 118 0.741221 CAACGGCTGGTCTAAGGCTC 60.741 60.000 0.00 0.00 40.47 4.70
120 121 0.320374 TCACAACGGCTGGTCTAAGG 59.680 55.000 0.00 0.00 0.00 2.69
125 126 2.668550 GGGTCACAACGGCTGGTC 60.669 66.667 0.00 0.00 0.00 4.02
149 150 9.245481 GGGAGTAGTTTATATAGAGTGCACTAT 57.755 37.037 21.73 20.44 37.01 2.12
162 163 9.684702 ATTTAGGAATGGAGGGAGTAGTTTATA 57.315 33.333 0.00 0.00 0.00 0.98
163 164 8.582891 ATTTAGGAATGGAGGGAGTAGTTTAT 57.417 34.615 0.00 0.00 0.00 1.40
164 165 9.684702 ATATTTAGGAATGGAGGGAGTAGTTTA 57.315 33.333 0.00 0.00 0.00 2.01
165 166 6.910259 ATTTAGGAATGGAGGGAGTAGTTT 57.090 37.500 0.00 0.00 0.00 2.66
166 167 9.327731 CTATATTTAGGAATGGAGGGAGTAGTT 57.672 37.037 0.00 0.00 0.00 2.24
167 168 8.903059 CTATATTTAGGAATGGAGGGAGTAGT 57.097 38.462 0.00 0.00 0.00 2.73
211 212 9.577110 CATTTTGCTTCATATGTAGTCATTTGT 57.423 29.630 10.61 0.00 35.53 2.83
212 213 9.791820 TCATTTTGCTTCATATGTAGTCATTTG 57.208 29.630 10.61 4.90 35.41 2.32
214 215 9.182214 ACTCATTTTGCTTCATATGTAGTCATT 57.818 29.630 10.61 0.00 35.70 2.57
215 216 8.618677 CACTCATTTTGCTTCATATGTAGTCAT 58.381 33.333 10.61 0.00 38.00 3.06
216 217 7.823799 TCACTCATTTTGCTTCATATGTAGTCA 59.176 33.333 10.61 6.75 0.00 3.41
217 218 8.201554 TCACTCATTTTGCTTCATATGTAGTC 57.798 34.615 10.61 4.54 0.00 2.59
218 219 8.565896 TTCACTCATTTTGCTTCATATGTAGT 57.434 30.769 10.61 0.00 0.00 2.73
225 226 9.715121 AATGTAAATTCACTCATTTTGCTTCAT 57.285 25.926 0.00 0.00 0.00 2.57
226 227 9.545105 AAATGTAAATTCACTCATTTTGCTTCA 57.455 25.926 0.00 0.00 37.25 3.02
257 258 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
259 260 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
260 261 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
261 262 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
262 263 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
263 264 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
264 265 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
265 266 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
266 267 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
267 268 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
268 269 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
314 315 9.706691 CTGCTATATTTTCTCCGTTCCTAAATA 57.293 33.333 0.00 0.00 0.00 1.40
315 316 8.429641 TCTGCTATATTTTCTCCGTTCCTAAAT 58.570 33.333 0.00 0.00 0.00 1.40
316 317 7.788026 TCTGCTATATTTTCTCCGTTCCTAAA 58.212 34.615 0.00 0.00 0.00 1.85
317 318 7.356089 TCTGCTATATTTTCTCCGTTCCTAA 57.644 36.000 0.00 0.00 0.00 2.69
318 319 6.971726 TCTGCTATATTTTCTCCGTTCCTA 57.028 37.500 0.00 0.00 0.00 2.94
319 320 5.871396 TCTGCTATATTTTCTCCGTTCCT 57.129 39.130 0.00 0.00 0.00 3.36
320 321 5.409826 CCATCTGCTATATTTTCTCCGTTCC 59.590 44.000 0.00 0.00 0.00 3.62
321 322 6.223852 TCCATCTGCTATATTTTCTCCGTTC 58.776 40.000 0.00 0.00 0.00 3.95
322 323 6.174720 TCCATCTGCTATATTTTCTCCGTT 57.825 37.500 0.00 0.00 0.00 4.44
323 324 5.305644 ACTCCATCTGCTATATTTTCTCCGT 59.694 40.000 0.00 0.00 0.00 4.69
324 325 5.788450 ACTCCATCTGCTATATTTTCTCCG 58.212 41.667 0.00 0.00 0.00 4.63
325 326 6.429385 CCAACTCCATCTGCTATATTTTCTCC 59.571 42.308 0.00 0.00 0.00 3.71
326 327 7.220030 TCCAACTCCATCTGCTATATTTTCTC 58.780 38.462 0.00 0.00 0.00 2.87
327 328 7.141758 TCCAACTCCATCTGCTATATTTTCT 57.858 36.000 0.00 0.00 0.00 2.52
328 329 7.283127 TGTTCCAACTCCATCTGCTATATTTTC 59.717 37.037 0.00 0.00 0.00 2.29
329 330 7.118723 TGTTCCAACTCCATCTGCTATATTTT 58.881 34.615 0.00 0.00 0.00 1.82
330 331 6.662755 TGTTCCAACTCCATCTGCTATATTT 58.337 36.000 0.00 0.00 0.00 1.40
331 332 6.252599 TGTTCCAACTCCATCTGCTATATT 57.747 37.500 0.00 0.00 0.00 1.28
332 333 5.894298 TGTTCCAACTCCATCTGCTATAT 57.106 39.130 0.00 0.00 0.00 0.86
333 334 5.894298 ATGTTCCAACTCCATCTGCTATA 57.106 39.130 0.00 0.00 0.00 1.31
334 335 4.785346 ATGTTCCAACTCCATCTGCTAT 57.215 40.909 0.00 0.00 0.00 2.97
335 336 5.130975 ACATATGTTCCAACTCCATCTGCTA 59.869 40.000 1.41 0.00 0.00 3.49
336 337 4.080129 ACATATGTTCCAACTCCATCTGCT 60.080 41.667 1.41 0.00 0.00 4.24
337 338 4.036027 CACATATGTTCCAACTCCATCTGC 59.964 45.833 5.37 0.00 0.00 4.26
338 339 5.430886 TCACATATGTTCCAACTCCATCTG 58.569 41.667 5.37 0.00 0.00 2.90
339 340 5.698741 TCACATATGTTCCAACTCCATCT 57.301 39.130 5.37 0.00 0.00 2.90
340 341 6.057533 TGATCACATATGTTCCAACTCCATC 58.942 40.000 5.37 0.00 0.00 3.51
341 342 6.005066 TGATCACATATGTTCCAACTCCAT 57.995 37.500 5.37 0.00 0.00 3.41
342 343 5.434182 TGATCACATATGTTCCAACTCCA 57.566 39.130 5.37 0.00 0.00 3.86
343 344 6.769822 AGAATGATCACATATGTTCCAACTCC 59.230 38.462 5.37 0.00 35.50 3.85
344 345 7.798596 AGAATGATCACATATGTTCCAACTC 57.201 36.000 5.37 6.08 35.50 3.01
356 357 9.995003 GTTCTCTCCTTTATAGAATGATCACAT 57.005 33.333 0.00 0.00 38.50 3.21
357 358 8.981659 TGTTCTCTCCTTTATAGAATGATCACA 58.018 33.333 0.00 0.00 32.26 3.58
358 359 9.823647 TTGTTCTCTCCTTTATAGAATGATCAC 57.176 33.333 0.00 0.00 32.26 3.06
374 375 7.391833 ACTTCCTATTGATGTTTTGTTCTCTCC 59.608 37.037 0.00 0.00 0.00 3.71
389 390 9.892444 TGAAGGTAATATCCTACTTCCTATTGA 57.108 33.333 0.00 0.00 36.74 2.57
393 394 9.670442 ACAATGAAGGTAATATCCTACTTCCTA 57.330 33.333 0.00 0.00 36.74 2.94
437 438 2.419574 GGGTGTACGCACAAGGATGTAT 60.420 50.000 8.97 0.00 46.95 2.29
446 447 1.826340 ATGCAGAGGGTGTACGCACA 61.826 55.000 12.00 0.00 46.95 4.57
477 478 2.135933 GGCATGAACATAGAGGCGTAC 58.864 52.381 0.00 0.00 0.00 3.67
508 509 2.309162 TCCATGGGTAAAATCCGGACAA 59.691 45.455 6.12 0.00 0.00 3.18
512 513 3.012934 ACTTCCATGGGTAAAATCCGG 57.987 47.619 13.02 0.00 0.00 5.14
513 514 4.036380 GCTAACTTCCATGGGTAAAATCCG 59.964 45.833 13.02 0.00 0.00 4.18
522 523 3.132289 TCTTCTACGCTAACTTCCATGGG 59.868 47.826 13.02 0.00 0.00 4.00
529 530 4.160626 AGCAGGAATCTTCTACGCTAACTT 59.839 41.667 0.00 0.00 0.00 2.66
554 555 8.237267 GGACATGGTAAGTTTCATGACTAAAAG 58.763 37.037 19.31 0.00 42.25 2.27
683 701 1.067212 CTAGTGTTGTAGGCGCTAGGG 59.933 57.143 7.64 1.65 41.06 3.53
685 703 3.777465 TTCTAGTGTTGTAGGCGCTAG 57.223 47.619 7.64 6.57 44.17 3.42
710 728 4.504916 CTCGCCCGGAGCTGTCTG 62.505 72.222 0.73 0.00 40.39 3.51
742 760 1.201965 GCTCAGATACTTTGTGCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
767 806 1.502231 CTATCCGGAGACAATTGGCG 58.498 55.000 11.34 0.00 0.00 5.69
768 807 1.202698 AGCTATCCGGAGACAATTGGC 60.203 52.381 11.34 6.83 0.00 4.52
769 808 2.487934 CAGCTATCCGGAGACAATTGG 58.512 52.381 11.34 0.00 0.00 3.16
770 809 1.869767 GCAGCTATCCGGAGACAATTG 59.130 52.381 11.34 3.24 0.00 2.32
771 810 1.202698 GGCAGCTATCCGGAGACAATT 60.203 52.381 11.34 0.00 0.00 2.32
772 811 0.394565 GGCAGCTATCCGGAGACAAT 59.605 55.000 11.34 0.00 0.00 2.71
773 812 0.975556 TGGCAGCTATCCGGAGACAA 60.976 55.000 11.34 0.00 0.00 3.18
774 813 0.975556 TTGGCAGCTATCCGGAGACA 60.976 55.000 11.34 0.00 0.00 3.41
775 814 0.249657 CTTGGCAGCTATCCGGAGAC 60.250 60.000 11.34 0.00 0.00 3.36
776 815 1.402896 CCTTGGCAGCTATCCGGAGA 61.403 60.000 11.34 3.76 0.00 3.71
777 816 1.070445 CCTTGGCAGCTATCCGGAG 59.930 63.158 11.34 0.00 0.00 4.63
778 817 3.106986 GCCTTGGCAGCTATCCGGA 62.107 63.158 6.61 6.61 0.00 5.14
779 818 2.592861 GCCTTGGCAGCTATCCGG 60.593 66.667 6.79 0.00 0.00 5.14
780 819 2.969238 CGCCTTGGCAGCTATCCG 60.969 66.667 12.45 0.00 0.00 4.18
781 820 3.282920 GCGCCTTGGCAGCTATCC 61.283 66.667 12.45 0.00 0.00 2.59
782 821 3.282920 GGCGCCTTGGCAGCTATC 61.283 66.667 22.15 7.52 44.08 2.08
943 982 4.724602 TTGCTCGCTCGCTCGCTT 62.725 61.111 0.00 0.00 0.00 4.68
1267 1313 3.228878 ACGCGACGTCTTAACAAAAAG 57.771 42.857 15.93 0.00 33.69 2.27
1271 1317 1.317332 CGTACGCGACGTCTTAACAA 58.683 50.000 15.93 0.00 46.86 2.83
1318 1364 1.573829 GGCGTGATGTTCGAGGCAAA 61.574 55.000 0.00 0.00 0.00 3.68
1358 1410 3.904136 AGCAGTTCAAGTCCAATTTCG 57.096 42.857 0.00 0.00 0.00 3.46
1400 1459 2.011947 TGTACATCGACGGACCTAGTG 58.988 52.381 0.00 0.00 0.00 2.74
1402 1461 1.004185 CGTGTACATCGACGGACCTAG 60.004 57.143 0.00 0.00 31.84 3.02
1403 1462 1.009078 CGTGTACATCGACGGACCTA 58.991 55.000 0.00 0.00 31.84 3.08
1404 1463 0.957395 ACGTGTACATCGACGGACCT 60.957 55.000 19.80 0.00 39.94 3.85
1405 1464 0.795735 CACGTGTACATCGACGGACC 60.796 60.000 19.80 0.00 39.94 4.46
1406 1465 0.795735 CCACGTGTACATCGACGGAC 60.796 60.000 15.65 0.00 39.94 4.79
1407 1466 1.503091 CCACGTGTACATCGACGGA 59.497 57.895 15.65 0.00 39.94 4.69
1408 1467 1.515519 CCCACGTGTACATCGACGG 60.516 63.158 15.65 17.74 39.94 4.79
1409 1468 2.156446 GCCCACGTGTACATCGACG 61.156 63.158 15.65 12.17 41.41 5.12
1410 1469 2.156446 CGCCCACGTGTACATCGAC 61.156 63.158 15.65 0.00 33.53 4.20
1426 1485 4.450122 CATGACGCAGCACCACGC 62.450 66.667 0.00 0.00 42.91 5.34
1435 1494 0.105039 TACCACACACACATGACGCA 59.895 50.000 0.00 0.00 0.00 5.24
1437 1496 2.148916 AGTACCACACACACATGACG 57.851 50.000 0.00 0.00 0.00 4.35
1442 1501 3.564264 TGTAGGTAGTACCACACACACA 58.436 45.455 21.49 11.27 41.95 3.72
1443 1502 4.461781 AGATGTAGGTAGTACCACACACAC 59.538 45.833 22.27 19.00 41.95 3.82
1447 1506 6.764308 TTGTAGATGTAGGTAGTACCACAC 57.236 41.667 21.49 17.40 41.95 3.82
1448 1507 7.398047 ACAATTGTAGATGTAGGTAGTACCACA 59.602 37.037 21.49 20.63 41.95 4.17
1449 1508 7.779073 ACAATTGTAGATGTAGGTAGTACCAC 58.221 38.462 21.49 16.24 41.95 4.16
1450 1509 7.966339 ACAATTGTAGATGTAGGTAGTACCA 57.034 36.000 21.49 4.83 41.95 3.25
1451 1510 8.906867 TGTACAATTGTAGATGTAGGTAGTACC 58.093 37.037 18.56 11.73 38.99 3.34
1473 1536 2.268298 CAACGTAGACCAGGCATGTAC 58.732 52.381 0.00 0.00 0.00 2.90
1524 1591 4.911610 CCAGCGTTTCAGAGTGTTAATTTG 59.088 41.667 0.00 0.00 0.00 2.32
1568 1635 8.671921 GGCAAATAATCTGGATCATACTGTATG 58.328 37.037 19.37 19.37 37.52 2.39
1597 1664 8.857694 AATATGTTTTCGGTTCTTCTTTCCTA 57.142 30.769 0.00 0.00 0.00 2.94
1626 1706 5.769367 CGACAAGTAATATGGATCGAAGGA 58.231 41.667 0.00 0.00 0.00 3.36
1631 1711 3.121944 GCTGCGACAAGTAATATGGATCG 59.878 47.826 0.00 0.00 0.00 3.69
1638 1718 4.328983 GCACTAAAGCTGCGACAAGTAATA 59.671 41.667 0.00 0.00 0.00 0.98
1643 1723 0.867746 TGCACTAAAGCTGCGACAAG 59.132 50.000 0.00 0.00 37.46 3.16
1715 1795 4.178956 TGAAAAGCCCCAAGTACTTTCT 57.821 40.909 5.07 0.00 32.63 2.52
1716 1796 4.082190 GGATGAAAAGCCCCAAGTACTTTC 60.082 45.833 5.07 0.00 32.63 2.62
1747 1827 3.164268 TGTCTGCATGCCAAATTAACCT 58.836 40.909 16.68 0.00 0.00 3.50
1917 1999 4.672587 TTTGAGACTCGGATGATTAGGG 57.327 45.455 0.00 0.00 0.00 3.53
1967 2067 1.352156 CTTACTGTTCACTCGCGGGC 61.352 60.000 5.51 0.00 0.00 6.13
1986 2086 5.651172 AAAAGTTGCTATTTTTGGCGAAC 57.349 34.783 0.91 0.00 0.00 3.95
2032 2135 5.136105 ACCTCAAGAACTCAAGCATCTTTT 58.864 37.500 0.00 0.00 31.26 2.27
2098 2201 3.641437 TCGAATTTGCCTTTTGTCCTG 57.359 42.857 0.00 0.00 0.00 3.86
2101 2204 6.255215 TCGAATATCGAATTTGCCTTTTGTC 58.745 36.000 0.00 0.00 46.90 3.18
2102 2205 6.189677 TCGAATATCGAATTTGCCTTTTGT 57.810 33.333 0.00 0.00 46.90 2.83
2123 2418 9.708222 CTGTGAACTCATCCTTTAAAATTATCG 57.292 33.333 0.00 0.00 0.00 2.92
2133 2428 2.443255 ACACCCTGTGAACTCATCCTTT 59.557 45.455 0.49 0.00 36.96 3.11
2134 2429 2.057922 ACACCCTGTGAACTCATCCTT 58.942 47.619 0.49 0.00 36.96 3.36
2135 2430 1.734655 ACACCCTGTGAACTCATCCT 58.265 50.000 0.49 0.00 36.96 3.24
2136 2431 2.832129 TCTACACCCTGTGAACTCATCC 59.168 50.000 0.49 0.00 36.96 3.51
2137 2432 4.160439 TCATCTACACCCTGTGAACTCATC 59.840 45.833 0.49 0.00 36.96 2.92
2138 2433 4.096681 TCATCTACACCCTGTGAACTCAT 58.903 43.478 0.49 0.00 36.96 2.90
2139 2434 3.506398 TCATCTACACCCTGTGAACTCA 58.494 45.455 0.49 0.00 36.96 3.41
2140 2435 3.511934 ACTCATCTACACCCTGTGAACTC 59.488 47.826 0.49 0.00 36.96 3.01
2141 2436 3.511477 ACTCATCTACACCCTGTGAACT 58.489 45.455 0.49 0.00 36.96 3.01
2143 2438 3.901222 TGAACTCATCTACACCCTGTGAA 59.099 43.478 0.49 0.00 36.96 3.18
2144 2439 3.506398 TGAACTCATCTACACCCTGTGA 58.494 45.455 0.49 0.00 36.96 3.58
2145 2440 3.368843 CCTGAACTCATCTACACCCTGTG 60.369 52.174 0.00 0.00 39.75 3.66
2146 2441 2.834549 CCTGAACTCATCTACACCCTGT 59.165 50.000 0.00 0.00 0.00 4.00
2147 2442 3.099905 TCCTGAACTCATCTACACCCTG 58.900 50.000 0.00 0.00 0.00 4.45
2162 2457 4.020218 CGAATATCCCATTAGGCTCCTGAA 60.020 45.833 0.00 0.00 34.51 3.02
2165 2460 3.791320 TCGAATATCCCATTAGGCTCCT 58.209 45.455 0.00 0.00 34.51 3.69
2216 2589 3.624861 GCATGAGGGACACAAGACATAAG 59.375 47.826 0.00 0.00 29.57 1.73
2297 2670 7.502120 AATACTCATTATGGACAACTGATGC 57.498 36.000 0.00 0.00 0.00 3.91
2299 2672 9.561069 GGTAAATACTCATTATGGACAACTGAT 57.439 33.333 0.00 0.00 0.00 2.90
2300 2673 8.544622 TGGTAAATACTCATTATGGACAACTGA 58.455 33.333 0.00 0.00 0.00 3.41
2303 2676 9.337396 TGATGGTAAATACTCATTATGGACAAC 57.663 33.333 0.00 0.00 0.00 3.32
2315 2688 8.948631 TGTTGAATCTCTGATGGTAAATACTC 57.051 34.615 0.00 0.00 0.00 2.59
2316 2689 9.739276 TTTGTTGAATCTCTGATGGTAAATACT 57.261 29.630 0.00 0.00 0.00 2.12
2320 2693 9.695526 CAAATTTGTTGAATCTCTGATGGTAAA 57.304 29.630 10.15 0.00 0.00 2.01
2321 2694 8.859090 ACAAATTTGTTGAATCTCTGATGGTAA 58.141 29.630 18.13 0.00 38.47 2.85
2322 2695 8.408043 ACAAATTTGTTGAATCTCTGATGGTA 57.592 30.769 18.13 0.00 38.47 3.25
2380 2753 3.129792 TGCATAACACGCATCGTCA 57.870 47.368 0.00 0.00 38.32 4.35
2386 2759 2.746362 TCATCAACATGCATAACACGCA 59.254 40.909 0.00 0.00 44.94 5.24
2387 2760 3.100817 GTCATCAACATGCATAACACGC 58.899 45.455 0.00 0.00 0.00 5.34
2388 2761 4.142838 ACTGTCATCAACATGCATAACACG 60.143 41.667 0.00 0.00 37.23 4.49
2389 2762 5.300969 ACTGTCATCAACATGCATAACAC 57.699 39.130 0.00 0.00 37.23 3.32
2390 2763 5.963176 AACTGTCATCAACATGCATAACA 57.037 34.783 0.00 0.00 37.23 2.41
2391 2764 6.380995 TGAAACTGTCATCAACATGCATAAC 58.619 36.000 0.00 0.00 37.23 1.89
2477 2852 4.452733 CGTCCGAACCTCCAGGGC 62.453 72.222 0.00 0.00 40.27 5.19
2510 2885 2.433318 AGCGACTTCTTGAGCGCC 60.433 61.111 2.29 0.00 45.57 6.53
2578 2953 7.065563 CAGAGATTCAGACAAGTTAAGGATTGG 59.934 40.741 0.00 0.00 0.00 3.16
2754 3174 6.096705 CCCTGAATGAAATAGTTAACCATGCA 59.903 38.462 0.88 2.43 0.00 3.96
2851 3271 9.649167 GCCAGTTAAGAACTTAAGATGTTAGTA 57.351 33.333 10.09 0.00 40.46 1.82
2852 3272 7.606839 GGCCAGTTAAGAACTTAAGATGTTAGT 59.393 37.037 10.09 0.00 40.46 2.24
2853 3273 7.201530 CGGCCAGTTAAGAACTTAAGATGTTAG 60.202 40.741 10.09 0.00 40.46 2.34
2859 3279 4.312443 CACGGCCAGTTAAGAACTTAAGA 58.688 43.478 10.09 0.00 40.46 2.10
2920 3340 5.552870 ACATACATCCAGTGGGTAATCTC 57.447 43.478 9.92 0.00 34.93 2.75
2921 3341 6.462487 CGTTACATACATCCAGTGGGTAATCT 60.462 42.308 9.92 0.00 34.66 2.40
2922 3342 5.694910 CGTTACATACATCCAGTGGGTAATC 59.305 44.000 9.92 3.60 34.66 1.75
2923 3343 5.129815 ACGTTACATACATCCAGTGGGTAAT 59.870 40.000 9.92 0.00 34.66 1.89
2944 3364 4.574892 TGATGTCAAATCACACCATACGT 58.425 39.130 0.00 0.00 0.00 3.57
2945 3365 4.869861 TCTGATGTCAAATCACACCATACG 59.130 41.667 0.00 0.00 0.00 3.06
2953 3378 4.398247 GCGTTTCTCTGATGTCAAATCAC 58.602 43.478 0.00 0.00 0.00 3.06
2956 3381 3.679389 AGGCGTTTCTCTGATGTCAAAT 58.321 40.909 0.00 0.00 0.00 2.32
3026 3451 1.348036 AGGCTGTAGTTCACCTGGTTC 59.652 52.381 0.00 0.00 0.00 3.62
3247 3696 3.496692 CCTGACAGAACACCTGAATCCAA 60.497 47.826 3.32 0.00 45.78 3.53
3334 3787 3.620488 TCAGAAATGGTATCACCTTGGC 58.380 45.455 0.00 0.00 39.58 4.52
3454 3907 3.058160 GGTTGGAGCTGCGTGCAT 61.058 61.111 0.00 0.00 45.94 3.96
3517 3974 1.131638 TCTGAAGCACCTGAGTTGGT 58.868 50.000 0.00 0.00 41.77 3.67
3539 3996 6.093495 GGGAAACACGATGAGTTGATTAATGA 59.907 38.462 0.00 0.00 0.00 2.57
3570 4027 6.036517 CAGGATCGATACTTGTTTTTGAGAGG 59.963 42.308 7.64 0.00 0.00 3.69
3571 4028 6.813649 TCAGGATCGATACTTGTTTTTGAGAG 59.186 38.462 7.64 0.00 0.00 3.20
3572 4029 6.697395 TCAGGATCGATACTTGTTTTTGAGA 58.303 36.000 7.64 0.00 0.00 3.27
3573 4030 6.968131 TCAGGATCGATACTTGTTTTTGAG 57.032 37.500 7.64 0.00 0.00 3.02
3574 4031 7.659799 TCTTTCAGGATCGATACTTGTTTTTGA 59.340 33.333 7.64 0.00 0.00 2.69
3575 4032 7.806690 TCTTTCAGGATCGATACTTGTTTTTG 58.193 34.615 7.64 0.00 0.00 2.44
3580 4037 7.607991 ACAATTTCTTTCAGGATCGATACTTGT 59.392 33.333 7.64 3.61 0.00 3.16
3581 4038 7.978982 ACAATTTCTTTCAGGATCGATACTTG 58.021 34.615 7.64 2.91 0.00 3.16
3616 4090 7.856145 AAACTCTCCTGCACAGATTTTATAG 57.144 36.000 0.00 0.00 0.00 1.31
3617 4091 9.905713 ATTAAACTCTCCTGCACAGATTTTATA 57.094 29.630 11.41 6.38 29.85 0.98
3618 4092 8.680903 CATTAAACTCTCCTGCACAGATTTTAT 58.319 33.333 11.41 4.43 29.85 1.40
3619 4093 7.121168 CCATTAAACTCTCCTGCACAGATTTTA 59.879 37.037 0.00 8.39 28.77 1.52
3620 4094 6.071728 CCATTAAACTCTCCTGCACAGATTTT 60.072 38.462 0.00 9.79 30.39 1.82
3651 4131 0.670854 GAGAGACACCTGAAACCGCC 60.671 60.000 0.00 0.00 0.00 6.13
3848 4328 8.200792 AGTAGAAGTGATGTCATCTAATCCAAC 58.799 37.037 13.90 9.53 0.00 3.77
3886 4366 0.037697 GCTCATGTGGACGTACACCA 60.038 55.000 27.68 16.01 40.62 4.17
3887 4367 0.739813 GGCTCATGTGGACGTACACC 60.740 60.000 27.68 11.80 40.62 4.16
3888 4368 0.037697 TGGCTCATGTGGACGTACAC 60.038 55.000 24.43 24.43 41.68 2.90
3889 4369 0.901827 ATGGCTCATGTGGACGTACA 59.098 50.000 0.00 0.00 34.63 2.90
3890 4370 1.571919 GATGGCTCATGTGGACGTAC 58.428 55.000 0.00 0.00 0.00 3.67
3891 4371 0.102300 CGATGGCTCATGTGGACGTA 59.898 55.000 0.00 0.00 0.00 3.57
3892 4372 1.153568 CGATGGCTCATGTGGACGT 60.154 57.895 0.00 0.00 0.00 4.34
3893 4373 2.528743 GCGATGGCTCATGTGGACG 61.529 63.158 0.00 0.00 35.83 4.79
3894 4374 2.528743 CGCGATGGCTCATGTGGAC 61.529 63.158 0.00 0.00 36.88 4.02
3895 4375 2.202919 CGCGATGGCTCATGTGGA 60.203 61.111 0.00 0.00 36.88 4.02
3896 4376 2.202919 TCGCGATGGCTCATGTGG 60.203 61.111 3.71 0.00 36.88 4.17
3897 4377 2.528743 GGTCGCGATGGCTCATGTG 61.529 63.158 14.06 0.00 36.88 3.21
3898 4378 2.202932 GGTCGCGATGGCTCATGT 60.203 61.111 14.06 0.00 36.88 3.21
3899 4379 2.969238 GGGTCGCGATGGCTCATG 60.969 66.667 14.06 0.00 36.88 3.07
3900 4380 4.241555 GGGGTCGCGATGGCTCAT 62.242 66.667 14.06 0.00 36.88 2.90
3902 4382 4.241555 ATGGGGTCGCGATGGCTC 62.242 66.667 14.06 0.00 36.88 4.70
3903 4383 4.552365 CATGGGGTCGCGATGGCT 62.552 66.667 14.06 0.00 36.88 4.75
3904 4384 3.454587 TACATGGGGTCGCGATGGC 62.455 63.158 14.06 0.00 0.00 4.40
3905 4385 1.300931 CTACATGGGGTCGCGATGG 60.301 63.158 14.06 0.86 0.00 3.51
3906 4386 0.671796 TACTACATGGGGTCGCGATG 59.328 55.000 14.06 8.85 0.00 3.84
3907 4387 0.672342 GTACTACATGGGGTCGCGAT 59.328 55.000 14.06 0.00 0.00 4.58
3908 4388 0.680601 TGTACTACATGGGGTCGCGA 60.681 55.000 3.71 3.71 0.00 5.87
3909 4389 0.173935 TTGTACTACATGGGGTCGCG 59.826 55.000 0.00 0.00 0.00 5.87
3910 4390 1.066716 TGTTGTACTACATGGGGTCGC 60.067 52.381 6.02 0.00 0.00 5.19
3911 4391 3.259064 CTTGTTGTACTACATGGGGTCG 58.741 50.000 10.94 0.00 0.00 4.79
3912 4392 4.281898 ACTTGTTGTACTACATGGGGTC 57.718 45.455 21.23 0.00 0.00 4.46
3913 4393 5.088730 TCTACTTGTTGTACTACATGGGGT 58.911 41.667 21.23 14.91 0.00 4.95
3914 4394 5.670792 TCTACTTGTTGTACTACATGGGG 57.329 43.478 21.23 14.97 0.00 4.96
3915 4395 6.640518 ACATCTACTTGTTGTACTACATGGG 58.359 40.000 21.23 15.21 0.00 4.00
3916 4396 8.683615 TCTACATCTACTTGTTGTACTACATGG 58.316 37.037 21.23 14.89 31.70 3.66
3940 4420 8.237267 CGGTTGAAGTTGCTCTTATTTATTTCT 58.763 33.333 0.00 0.00 36.40 2.52
3941 4421 7.484959 CCGGTTGAAGTTGCTCTTATTTATTTC 59.515 37.037 0.00 0.00 36.40 2.17
3942 4422 7.312899 CCGGTTGAAGTTGCTCTTATTTATTT 58.687 34.615 0.00 0.00 36.40 1.40
3943 4423 6.127730 CCCGGTTGAAGTTGCTCTTATTTATT 60.128 38.462 0.00 0.00 36.40 1.40
3944 4424 5.357032 CCCGGTTGAAGTTGCTCTTATTTAT 59.643 40.000 0.00 0.00 36.40 1.40
3945 4425 4.698304 CCCGGTTGAAGTTGCTCTTATTTA 59.302 41.667 0.00 0.00 36.40 1.40
3946 4426 3.506067 CCCGGTTGAAGTTGCTCTTATTT 59.494 43.478 0.00 0.00 36.40 1.40
3947 4427 3.081804 CCCGGTTGAAGTTGCTCTTATT 58.918 45.455 0.00 0.00 36.40 1.40
3948 4428 2.711542 CCCGGTTGAAGTTGCTCTTAT 58.288 47.619 0.00 0.00 36.40 1.73
3965 4445 0.928229 CGAAGAAAATAGGTCGCCCG 59.072 55.000 0.00 0.00 35.12 6.13
4024 4504 1.417372 CGTTTGGGTAGACGCGTTTA 58.583 50.000 15.53 9.93 32.11 2.01
4025 4505 1.223417 CCGTTTGGGTAGACGCGTTT 61.223 55.000 15.53 11.28 37.91 3.60
4072 4553 2.572333 AATGGGCTGGGAATGGGTCG 62.572 60.000 0.00 0.00 0.00 4.79
4095 4576 1.137404 GCCGACGTTAAGCCGACTA 59.863 57.895 0.00 0.00 0.00 2.59
4102 4583 3.539107 GTCCGCGCCGACGTTAAG 61.539 66.667 12.97 0.00 42.83 1.85
4259 4744 0.795085 CGTCGAGGTTGAGTACGTCT 59.205 55.000 0.00 0.00 39.05 4.18
4306 4791 4.129737 CGGTCGTCATGTCGGGCT 62.130 66.667 12.31 0.00 0.00 5.19
4543 5029 1.186200 CCCTAGCATATAGAGCGCCA 58.814 55.000 2.29 0.00 37.01 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.