Multiple sequence alignment - TraesCS2D01G254500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G254500 chr2D 100.000 4543 0 0 1 4543 306565332 306560790 0.000000e+00 8390.0
1 TraesCS2D01G254500 chr2D 87.500 128 12 4 1105 1231 306630247 306630123 1.320000e-30 145.0
2 TraesCS2D01G254500 chr2A 95.742 3100 112 9 684 3777 387042509 387039424 0.000000e+00 4975.0
3 TraesCS2D01G254500 chr2A 91.667 420 25 5 4122 4541 386975053 386974644 1.420000e-159 573.0
4 TraesCS2D01G254500 chr2A 96.711 152 3 1 3854 4003 387039423 387039272 7.540000e-63 252.0
5 TraesCS2D01G254500 chr2B 94.032 1793 92 10 601 2388 361284141 361285923 0.000000e+00 2704.0
6 TraesCS2D01G254500 chr2B 95.732 1195 38 3 2807 4001 361287985 361289166 0.000000e+00 1912.0
7 TraesCS2D01G254500 chr2B 96.364 440 16 0 2361 2800 361285958 361286397 0.000000e+00 725.0
8 TraesCS2D01G254500 chr2B 94.493 454 25 0 4090 4543 361289440 361289893 0.000000e+00 701.0
9 TraesCS2D01G254500 chr3D 88.854 314 31 4 4232 4543 8433742 8434053 2.560000e-102 383.0
10 TraesCS2D01G254500 chr3D 87.179 312 40 0 4232 4543 338308134 338308445 5.590000e-94 355.0
11 TraesCS2D01G254500 chr3D 85.987 314 38 6 4232 4543 364984732 364985041 9.420000e-87 331.0
12 TraesCS2D01G254500 chr3D 90.541 148 13 1 41 187 104566373 104566226 1.290000e-45 195.0
13 TraesCS2D01G254500 chr5A 88.119 303 30 4 4241 4540 681452966 681453265 5.590000e-94 355.0
14 TraesCS2D01G254500 chr5A 78.313 166 30 6 401 564 8908115 8907954 8.040000e-18 102.0
15 TraesCS2D01G254500 chr3B 86.859 312 40 1 4230 4540 141802683 141802994 9.350000e-92 348.0
16 TraesCS2D01G254500 chr6D 87.162 296 36 2 4249 4543 471476806 471477100 7.280000e-88 335.0
17 TraesCS2D01G254500 chr5D 84.356 326 49 1 4220 4543 51923431 51923756 7.330000e-83 318.0
18 TraesCS2D01G254500 chr6B 92.308 104 6 2 113 215 45568155 45568053 3.660000e-31 147.0
19 TraesCS2D01G254500 chr6B 85.542 83 5 3 39 121 45568586 45568511 3.770000e-11 80.5
20 TraesCS2D01G254500 chr6B 97.778 45 1 0 39 83 45666393 45666349 1.360000e-10 78.7
21 TraesCS2D01G254500 chr4D 79.825 114 14 6 480 591 5809172 5809066 1.750000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G254500 chr2D 306560790 306565332 4542 True 8390.0 8390 100.00000 1 4543 1 chr2D.!!$R1 4542
1 TraesCS2D01G254500 chr2A 387039272 387042509 3237 True 2613.5 4975 96.22650 684 4003 2 chr2A.!!$R2 3319
2 TraesCS2D01G254500 chr2B 361284141 361289893 5752 False 1510.5 2704 95.15525 601 4543 4 chr2B.!!$F1 3942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.032815 GAAGCTCCGCCACTATCCTC 59.967 60.0 0.00 0.0 0.00 3.71 F
225 226 0.033503 TCCGCCACTATCCTCTGTCA 60.034 55.0 0.00 0.0 0.00 3.58 F
367 368 0.036875 TCAGCTCCTCTGAGTCACGA 59.963 55.0 3.66 0.0 46.34 4.35 F
416 417 0.251341 AAGCGGGCTTCAAGACCAAT 60.251 50.0 10.86 0.0 46.60 3.16 F
1900 1908 0.550914 AGCAACCCTGACAACCTTCA 59.449 50.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1453 0.104120 CATGGCAAGCATGACCATGG 59.896 55.000 25.06 11.19 46.36 3.66 R
1560 1567 0.447801 GCTGGTTAGCGTTCATGGTG 59.552 55.000 0.00 0.00 40.67 4.17 R
1629 1636 0.792640 AGAGCAATGCGAAGTGAACG 59.207 50.000 0.00 0.00 0.00 3.95 R
2108 2116 1.005215 CCAAACCTCCATGGAAGAGCT 59.995 52.381 17.55 0.00 39.12 4.09 R
3897 5554 0.258194 AGATACTCCGGTCCCTCGTT 59.742 55.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.728922 CGTCTTCTACACTTATCGCCC 58.271 52.381 0.00 0.00 0.00 6.13
21 22 2.098607 CGTCTTCTACACTTATCGCCCA 59.901 50.000 0.00 0.00 0.00 5.36
22 23 3.428452 CGTCTTCTACACTTATCGCCCAA 60.428 47.826 0.00 0.00 0.00 4.12
23 24 4.694339 GTCTTCTACACTTATCGCCCAAT 58.306 43.478 0.00 0.00 0.00 3.16
24 25 4.745620 GTCTTCTACACTTATCGCCCAATC 59.254 45.833 0.00 0.00 0.00 2.67
25 26 4.649674 TCTTCTACACTTATCGCCCAATCT 59.350 41.667 0.00 0.00 0.00 2.40
26 27 5.128827 TCTTCTACACTTATCGCCCAATCTT 59.871 40.000 0.00 0.00 0.00 2.40
27 28 5.353394 TCTACACTTATCGCCCAATCTTT 57.647 39.130 0.00 0.00 0.00 2.52
28 29 5.357257 TCTACACTTATCGCCCAATCTTTC 58.643 41.667 0.00 0.00 0.00 2.62
29 30 2.936498 ACACTTATCGCCCAATCTTTCG 59.064 45.455 0.00 0.00 0.00 3.46
30 31 1.940613 ACTTATCGCCCAATCTTTCGC 59.059 47.619 0.00 0.00 0.00 4.70
31 32 1.264288 CTTATCGCCCAATCTTTCGCC 59.736 52.381 0.00 0.00 0.00 5.54
32 33 0.468226 TATCGCCCAATCTTTCGCCT 59.532 50.000 0.00 0.00 0.00 5.52
33 34 0.815615 ATCGCCCAATCTTTCGCCTC 60.816 55.000 0.00 0.00 0.00 4.70
34 35 2.472909 CGCCCAATCTTTCGCCTCC 61.473 63.158 0.00 0.00 0.00 4.30
35 36 1.077429 GCCCAATCTTTCGCCTCCT 60.077 57.895 0.00 0.00 0.00 3.69
36 37 1.098129 GCCCAATCTTTCGCCTCCTC 61.098 60.000 0.00 0.00 0.00 3.71
37 38 0.543749 CCCAATCTTTCGCCTCCTCT 59.456 55.000 0.00 0.00 0.00 3.69
38 39 1.661341 CCAATCTTTCGCCTCCTCTG 58.339 55.000 0.00 0.00 0.00 3.35
39 40 1.065854 CCAATCTTTCGCCTCCTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
40 41 2.275318 CAATCTTTCGCCTCCTCTGTC 58.725 52.381 0.00 0.00 0.00 3.51
41 42 1.561643 ATCTTTCGCCTCCTCTGTCA 58.438 50.000 0.00 0.00 0.00 3.58
42 43 0.603569 TCTTTCGCCTCCTCTGTCAC 59.396 55.000 0.00 0.00 0.00 3.67
43 44 0.390472 CTTTCGCCTCCTCTGTCACC 60.390 60.000 0.00 0.00 0.00 4.02
44 45 2.154798 TTTCGCCTCCTCTGTCACCG 62.155 60.000 0.00 0.00 0.00 4.94
45 46 4.135153 CGCCTCCTCTGTCACCGG 62.135 72.222 0.00 0.00 0.00 5.28
46 47 4.459089 GCCTCCTCTGTCACCGGC 62.459 72.222 0.00 0.00 0.00 6.13
47 48 4.135153 CCTCCTCTGTCACCGGCG 62.135 72.222 0.00 0.00 0.00 6.46
48 49 4.135153 CTCCTCTGTCACCGGCGG 62.135 72.222 27.06 27.06 0.00 6.13
49 50 4.671590 TCCTCTGTCACCGGCGGA 62.672 66.667 35.78 8.46 0.00 5.54
50 51 4.135153 CCTCTGTCACCGGCGGAG 62.135 72.222 35.78 26.54 38.67 4.63
65 66 1.702886 CGGAGCTACACACAAGTCTG 58.297 55.000 0.00 0.00 0.00 3.51
66 67 1.433534 GGAGCTACACACAAGTCTGC 58.566 55.000 0.00 0.00 0.00 4.26
67 68 1.270305 GGAGCTACACACAAGTCTGCA 60.270 52.381 0.00 0.00 0.00 4.41
68 69 2.064762 GAGCTACACACAAGTCTGCAG 58.935 52.381 7.63 7.63 0.00 4.41
69 70 1.151668 GCTACACACAAGTCTGCAGG 58.848 55.000 15.13 0.00 0.00 4.85
70 71 1.800805 CTACACACAAGTCTGCAGGG 58.199 55.000 15.13 3.99 0.00 4.45
71 72 0.396435 TACACACAAGTCTGCAGGGG 59.604 55.000 15.13 0.37 0.00 4.79
72 73 2.113986 ACACAAGTCTGCAGGGGC 59.886 61.111 15.13 4.80 41.68 5.80
73 74 2.674380 CACAAGTCTGCAGGGGCC 60.674 66.667 15.13 0.00 40.13 5.80
74 75 3.177884 ACAAGTCTGCAGGGGCCA 61.178 61.111 15.13 0.00 40.13 5.36
75 76 2.357836 CAAGTCTGCAGGGGCCAT 59.642 61.111 15.13 0.00 40.13 4.40
76 77 2.050350 CAAGTCTGCAGGGGCCATG 61.050 63.158 15.10 15.10 40.13 3.66
77 78 3.951769 AAGTCTGCAGGGGCCATGC 62.952 63.158 34.54 34.54 44.11 4.06
98 99 4.617200 CCCCCAGCCTGAACAAAA 57.383 55.556 0.00 0.00 0.00 2.44
99 100 3.071671 CCCCCAGCCTGAACAAAAT 57.928 52.632 0.00 0.00 0.00 1.82
100 101 0.897621 CCCCCAGCCTGAACAAAATC 59.102 55.000 0.00 0.00 0.00 2.17
101 102 1.550869 CCCCCAGCCTGAACAAAATCT 60.551 52.381 0.00 0.00 0.00 2.40
102 103 1.821136 CCCCAGCCTGAACAAAATCTC 59.179 52.381 0.00 0.00 0.00 2.75
103 104 2.556114 CCCCAGCCTGAACAAAATCTCT 60.556 50.000 0.00 0.00 0.00 3.10
104 105 3.308402 CCCCAGCCTGAACAAAATCTCTA 60.308 47.826 0.00 0.00 0.00 2.43
105 106 4.335416 CCCAGCCTGAACAAAATCTCTAA 58.665 43.478 0.00 0.00 0.00 2.10
106 107 4.766891 CCCAGCCTGAACAAAATCTCTAAA 59.233 41.667 0.00 0.00 0.00 1.85
107 108 5.105997 CCCAGCCTGAACAAAATCTCTAAAG 60.106 44.000 0.00 0.00 0.00 1.85
108 109 5.707298 CCAGCCTGAACAAAATCTCTAAAGA 59.293 40.000 0.00 0.00 35.54 2.52
109 110 6.207417 CCAGCCTGAACAAAATCTCTAAAGAA 59.793 38.462 0.00 0.00 34.49 2.52
110 111 7.080724 CAGCCTGAACAAAATCTCTAAAGAAC 58.919 38.462 0.00 0.00 34.49 3.01
111 112 7.001073 AGCCTGAACAAAATCTCTAAAGAACT 58.999 34.615 0.00 0.00 34.49 3.01
112 113 7.503902 AGCCTGAACAAAATCTCTAAAGAACTT 59.496 33.333 0.00 0.00 34.49 2.66
113 114 8.138074 GCCTGAACAAAATCTCTAAAGAACTTT 58.862 33.333 5.18 5.18 34.49 2.66
138 139 8.664669 TTTTTAGGAGAGGCTTAATTGGAAAT 57.335 30.769 0.00 0.00 0.00 2.17
139 140 9.762381 TTTTTAGGAGAGGCTTAATTGGAAATA 57.238 29.630 0.00 0.00 0.00 1.40
140 141 8.980481 TTTAGGAGAGGCTTAATTGGAAATAG 57.020 34.615 0.00 0.00 0.00 1.73
141 142 6.831664 AGGAGAGGCTTAATTGGAAATAGA 57.168 37.500 0.00 0.00 0.00 1.98
142 143 7.213178 AGGAGAGGCTTAATTGGAAATAGAA 57.787 36.000 0.00 0.00 0.00 2.10
143 144 7.286313 AGGAGAGGCTTAATTGGAAATAGAAG 58.714 38.462 0.00 0.00 0.00 2.85
144 145 7.057264 GGAGAGGCTTAATTGGAAATAGAAGT 58.943 38.462 0.00 0.00 0.00 3.01
145 146 7.227711 GGAGAGGCTTAATTGGAAATAGAAGTC 59.772 40.741 0.00 0.00 0.00 3.01
146 147 7.866870 AGAGGCTTAATTGGAAATAGAAGTCT 58.133 34.615 0.00 0.00 31.81 3.24
147 148 8.332487 AGAGGCTTAATTGGAAATAGAAGTCTT 58.668 33.333 0.00 0.00 29.40 3.01
148 149 8.885693 AGGCTTAATTGGAAATAGAAGTCTTT 57.114 30.769 0.00 0.00 0.00 2.52
149 150 9.314133 AGGCTTAATTGGAAATAGAAGTCTTTT 57.686 29.630 0.00 0.00 0.00 2.27
150 151 9.358872 GGCTTAATTGGAAATAGAAGTCTTTTG 57.641 33.333 0.00 0.00 0.00 2.44
151 152 9.358872 GCTTAATTGGAAATAGAAGTCTTTTGG 57.641 33.333 0.00 0.00 0.00 3.28
152 153 9.358872 CTTAATTGGAAATAGAAGTCTTTTGGC 57.641 33.333 0.00 0.00 0.00 4.52
153 154 5.722021 TTGGAAATAGAAGTCTTTTGGCC 57.278 39.130 0.00 0.00 0.00 5.36
154 155 4.086457 TGGAAATAGAAGTCTTTTGGCCC 58.914 43.478 0.00 0.00 0.00 5.80
155 156 3.447586 GGAAATAGAAGTCTTTTGGCCCC 59.552 47.826 0.00 0.00 0.00 5.80
156 157 2.828661 ATAGAAGTCTTTTGGCCCCC 57.171 50.000 0.00 0.00 0.00 5.40
157 158 1.755200 TAGAAGTCTTTTGGCCCCCT 58.245 50.000 0.00 0.00 0.00 4.79
158 159 0.405973 AGAAGTCTTTTGGCCCCCTC 59.594 55.000 0.00 0.00 0.00 4.30
159 160 0.112412 GAAGTCTTTTGGCCCCCTCA 59.888 55.000 0.00 0.00 0.00 3.86
160 161 0.113190 AAGTCTTTTGGCCCCCTCAG 59.887 55.000 0.00 0.00 0.00 3.35
161 162 0.772124 AGTCTTTTGGCCCCCTCAGA 60.772 55.000 0.00 0.00 0.00 3.27
162 163 0.112412 GTCTTTTGGCCCCCTCAGAA 59.888 55.000 0.00 0.00 0.00 3.02
163 164 0.856982 TCTTTTGGCCCCCTCAGAAA 59.143 50.000 0.00 0.00 0.00 2.52
164 165 1.432807 TCTTTTGGCCCCCTCAGAAAT 59.567 47.619 0.00 0.00 0.00 2.17
165 166 2.158173 TCTTTTGGCCCCCTCAGAAATT 60.158 45.455 0.00 0.00 0.00 1.82
166 167 2.414250 TTTGGCCCCCTCAGAAATTT 57.586 45.000 0.00 0.00 0.00 1.82
167 168 3.551635 TTTGGCCCCCTCAGAAATTTA 57.448 42.857 0.00 0.00 0.00 1.40
168 169 3.551635 TTGGCCCCCTCAGAAATTTAA 57.448 42.857 0.00 0.00 0.00 1.52
169 170 3.100207 TGGCCCCCTCAGAAATTTAAG 57.900 47.619 0.00 0.00 0.00 1.85
170 171 2.381961 TGGCCCCCTCAGAAATTTAAGT 59.618 45.455 0.00 0.00 0.00 2.24
171 172 3.181412 TGGCCCCCTCAGAAATTTAAGTT 60.181 43.478 0.00 0.00 0.00 2.66
172 173 3.838317 GGCCCCCTCAGAAATTTAAGTTT 59.162 43.478 0.00 0.00 0.00 2.66
173 174 4.286032 GGCCCCCTCAGAAATTTAAGTTTT 59.714 41.667 0.00 0.00 0.00 2.43
174 175 5.237815 GCCCCCTCAGAAATTTAAGTTTTG 58.762 41.667 0.00 0.00 0.00 2.44
175 176 5.221641 GCCCCCTCAGAAATTTAAGTTTTGT 60.222 40.000 0.00 0.00 0.00 2.83
176 177 6.455647 CCCCCTCAGAAATTTAAGTTTTGTC 58.544 40.000 0.00 0.00 0.00 3.18
177 178 6.455647 CCCCTCAGAAATTTAAGTTTTGTCC 58.544 40.000 0.00 0.00 0.00 4.02
178 179 6.267699 CCCCTCAGAAATTTAAGTTTTGTCCT 59.732 38.462 0.00 0.00 0.00 3.85
179 180 7.202001 CCCCTCAGAAATTTAAGTTTTGTCCTT 60.202 37.037 0.00 0.00 0.00 3.36
180 181 7.653311 CCCTCAGAAATTTAAGTTTTGTCCTTG 59.347 37.037 0.00 0.00 0.00 3.61
181 182 7.653311 CCTCAGAAATTTAAGTTTTGTCCTTGG 59.347 37.037 0.00 0.00 0.00 3.61
182 183 6.983890 TCAGAAATTTAAGTTTTGTCCTTGGC 59.016 34.615 0.00 0.00 0.00 4.52
183 184 6.202762 CAGAAATTTAAGTTTTGTCCTTGGCC 59.797 38.462 0.00 0.00 0.00 5.36
184 185 4.617253 ATTTAAGTTTTGTCCTTGGCCC 57.383 40.909 0.00 0.00 0.00 5.80
185 186 2.003937 TAAGTTTTGTCCTTGGCCCC 57.996 50.000 0.00 0.00 0.00 5.80
186 187 0.264657 AAGTTTTGTCCTTGGCCCCT 59.735 50.000 0.00 0.00 0.00 4.79
187 188 0.178961 AGTTTTGTCCTTGGCCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
188 189 1.155155 TTTTGTCCTTGGCCCCTCC 59.845 57.895 0.00 0.00 0.00 4.30
189 190 1.660019 TTTTGTCCTTGGCCCCTCCA 61.660 55.000 0.00 0.00 44.85 3.86
199 200 2.922234 CCCCTCCAGGCATTCCTC 59.078 66.667 0.00 0.00 41.93 3.71
200 201 1.695597 CCCCTCCAGGCATTCCTCT 60.696 63.158 0.00 0.00 41.93 3.69
201 202 1.530771 CCCTCCAGGCATTCCTCTG 59.469 63.158 0.00 0.00 41.93 3.35
202 203 0.984961 CCCTCCAGGCATTCCTCTGA 60.985 60.000 0.00 0.00 41.93 3.27
203 204 0.914644 CCTCCAGGCATTCCTCTGAA 59.085 55.000 0.00 0.00 41.93 3.02
204 205 1.134159 CCTCCAGGCATTCCTCTGAAG 60.134 57.143 0.00 0.00 41.93 3.02
205 206 0.254178 TCCAGGCATTCCTCTGAAGC 59.746 55.000 0.00 0.00 41.93 3.86
206 207 0.255318 CCAGGCATTCCTCTGAAGCT 59.745 55.000 0.00 0.00 41.93 3.74
207 208 1.666054 CAGGCATTCCTCTGAAGCTC 58.334 55.000 0.00 0.00 41.93 4.09
208 209 0.545646 AGGCATTCCTCTGAAGCTCC 59.454 55.000 0.00 0.00 38.72 4.70
209 210 0.813210 GGCATTCCTCTGAAGCTCCG 60.813 60.000 0.00 0.00 33.05 4.63
210 211 1.435408 GCATTCCTCTGAAGCTCCGC 61.435 60.000 0.00 0.00 33.05 5.54
211 212 0.813210 CATTCCTCTGAAGCTCCGCC 60.813 60.000 0.00 0.00 33.05 6.13
212 213 1.267574 ATTCCTCTGAAGCTCCGCCA 61.268 55.000 0.00 0.00 33.05 5.69
213 214 2.125350 CCTCTGAAGCTCCGCCAC 60.125 66.667 0.00 0.00 0.00 5.01
214 215 2.654079 CCTCTGAAGCTCCGCCACT 61.654 63.158 0.00 0.00 0.00 4.00
215 216 1.323271 CCTCTGAAGCTCCGCCACTA 61.323 60.000 0.00 0.00 0.00 2.74
216 217 0.749649 CTCTGAAGCTCCGCCACTAT 59.250 55.000 0.00 0.00 0.00 2.12
217 218 0.747255 TCTGAAGCTCCGCCACTATC 59.253 55.000 0.00 0.00 0.00 2.08
218 219 0.249657 CTGAAGCTCCGCCACTATCC 60.250 60.000 0.00 0.00 0.00 2.59
219 220 0.687757 TGAAGCTCCGCCACTATCCT 60.688 55.000 0.00 0.00 0.00 3.24
220 221 0.032815 GAAGCTCCGCCACTATCCTC 59.967 60.000 0.00 0.00 0.00 3.71
221 222 0.397816 AAGCTCCGCCACTATCCTCT 60.398 55.000 0.00 0.00 0.00 3.69
222 223 1.112315 AGCTCCGCCACTATCCTCTG 61.112 60.000 0.00 0.00 0.00 3.35
223 224 1.395826 GCTCCGCCACTATCCTCTGT 61.396 60.000 0.00 0.00 0.00 3.41
224 225 0.671251 CTCCGCCACTATCCTCTGTC 59.329 60.000 0.00 0.00 0.00 3.51
225 226 0.033503 TCCGCCACTATCCTCTGTCA 60.034 55.000 0.00 0.00 0.00 3.58
226 227 1.043816 CCGCCACTATCCTCTGTCAT 58.956 55.000 0.00 0.00 0.00 3.06
227 228 1.269988 CCGCCACTATCCTCTGTCATG 60.270 57.143 0.00 0.00 0.00 3.07
228 229 1.269988 CGCCACTATCCTCTGTCATGG 60.270 57.143 0.00 0.00 0.00 3.66
229 230 1.542108 GCCACTATCCTCTGTCATGGC 60.542 57.143 0.00 0.00 43.89 4.40
230 231 1.071385 CCACTATCCTCTGTCATGGCC 59.929 57.143 0.00 0.00 0.00 5.36
231 232 1.764723 CACTATCCTCTGTCATGGCCA 59.235 52.381 8.56 8.56 0.00 5.36
232 233 2.171237 CACTATCCTCTGTCATGGCCAA 59.829 50.000 10.96 0.00 0.00 4.52
233 234 2.437281 ACTATCCTCTGTCATGGCCAAG 59.563 50.000 10.96 5.19 0.00 3.61
234 235 1.293062 ATCCTCTGTCATGGCCAAGT 58.707 50.000 10.96 0.00 0.00 3.16
235 236 0.615331 TCCTCTGTCATGGCCAAGTC 59.385 55.000 10.96 3.26 0.00 3.01
236 237 0.617413 CCTCTGTCATGGCCAAGTCT 59.383 55.000 10.96 0.00 0.00 3.24
237 238 1.833630 CCTCTGTCATGGCCAAGTCTA 59.166 52.381 10.96 0.00 0.00 2.59
238 239 2.158986 CCTCTGTCATGGCCAAGTCTAG 60.159 54.545 10.96 5.22 0.00 2.43
239 240 1.208052 TCTGTCATGGCCAAGTCTAGC 59.792 52.381 10.96 0.00 0.00 3.42
248 249 2.923121 GCCAAGTCTAGCCATGAATCA 58.077 47.619 0.00 0.00 0.00 2.57
249 250 2.877168 GCCAAGTCTAGCCATGAATCAG 59.123 50.000 0.00 0.00 0.00 2.90
250 251 3.474600 CCAAGTCTAGCCATGAATCAGG 58.525 50.000 0.00 0.00 0.00 3.86
259 260 1.331756 CCATGAATCAGGCAGTTACGC 59.668 52.381 0.00 0.00 0.00 4.42
260 261 1.004610 CATGAATCAGGCAGTTACGCG 60.005 52.381 3.53 3.53 0.00 6.01
261 262 1.348594 GAATCAGGCAGTTACGCGC 59.651 57.895 5.73 0.00 0.00 6.86
266 267 4.143363 GGCAGTTACGCGCCGAAC 62.143 66.667 5.73 8.65 38.82 3.95
267 268 3.408020 GCAGTTACGCGCCGAACA 61.408 61.111 18.25 0.00 0.00 3.18
268 269 2.945615 GCAGTTACGCGCCGAACAA 61.946 57.895 18.25 0.00 0.00 2.83
269 270 1.154727 CAGTTACGCGCCGAACAAC 60.155 57.895 18.25 8.48 0.00 3.32
270 271 2.201959 GTTACGCGCCGAACAACG 60.202 61.111 5.73 0.00 42.18 4.10
271 272 2.354422 TTACGCGCCGAACAACGA 60.354 55.556 5.73 0.00 45.77 3.85
272 273 1.733758 TTACGCGCCGAACAACGAT 60.734 52.632 5.73 0.00 45.77 3.73
273 274 1.946855 TTACGCGCCGAACAACGATG 61.947 55.000 5.73 0.00 45.77 3.84
274 275 2.799488 TACGCGCCGAACAACGATGA 62.799 55.000 5.73 0.00 45.77 2.92
275 276 2.395690 GCGCCGAACAACGATGAG 59.604 61.111 0.00 0.00 45.77 2.90
276 277 2.395690 CGCCGAACAACGATGAGC 59.604 61.111 0.00 0.00 45.77 4.26
277 278 2.094659 CGCCGAACAACGATGAGCT 61.095 57.895 0.00 0.00 45.77 4.09
278 279 1.710339 GCCGAACAACGATGAGCTC 59.290 57.895 6.82 6.82 45.77 4.09
296 297 4.010414 GCGCTCTGCATCGCCATC 62.010 66.667 14.62 0.00 45.01 3.51
297 298 3.344215 CGCTCTGCATCGCCATCC 61.344 66.667 0.00 0.00 0.00 3.51
298 299 2.203112 GCTCTGCATCGCCATCCA 60.203 61.111 0.00 0.00 0.00 3.41
299 300 1.820906 GCTCTGCATCGCCATCCAA 60.821 57.895 0.00 0.00 0.00 3.53
300 301 2.020131 CTCTGCATCGCCATCCAAC 58.980 57.895 0.00 0.00 0.00 3.77
301 302 0.745486 CTCTGCATCGCCATCCAACA 60.745 55.000 0.00 0.00 0.00 3.33
302 303 1.026182 TCTGCATCGCCATCCAACAC 61.026 55.000 0.00 0.00 0.00 3.32
303 304 1.002257 TGCATCGCCATCCAACACT 60.002 52.632 0.00 0.00 0.00 3.55
304 305 1.026182 TGCATCGCCATCCAACACTC 61.026 55.000 0.00 0.00 0.00 3.51
305 306 1.026182 GCATCGCCATCCAACACTCA 61.026 55.000 0.00 0.00 0.00 3.41
306 307 1.671979 CATCGCCATCCAACACTCAT 58.328 50.000 0.00 0.00 0.00 2.90
307 308 2.019249 CATCGCCATCCAACACTCATT 58.981 47.619 0.00 0.00 0.00 2.57
308 309 1.452110 TCGCCATCCAACACTCATTG 58.548 50.000 0.00 0.00 0.00 2.82
309 310 0.179156 CGCCATCCAACACTCATTGC 60.179 55.000 0.00 0.00 0.00 3.56
310 311 1.180029 GCCATCCAACACTCATTGCT 58.820 50.000 0.00 0.00 0.00 3.91
311 312 1.135199 GCCATCCAACACTCATTGCTG 60.135 52.381 0.00 0.00 0.00 4.41
312 313 1.475280 CCATCCAACACTCATTGCTGG 59.525 52.381 0.00 0.00 42.22 4.85
314 315 1.896220 TCCAACACTCATTGCTGGAC 58.104 50.000 0.00 0.00 44.23 4.02
315 316 1.142667 TCCAACACTCATTGCTGGACA 59.857 47.619 0.00 0.00 44.23 4.02
316 317 1.267806 CCAACACTCATTGCTGGACAC 59.732 52.381 0.00 0.00 43.39 3.67
317 318 1.267806 CAACACTCATTGCTGGACACC 59.732 52.381 0.00 0.00 0.00 4.16
318 319 0.603707 ACACTCATTGCTGGACACCG 60.604 55.000 0.00 0.00 0.00 4.94
319 320 0.320683 CACTCATTGCTGGACACCGA 60.321 55.000 0.00 0.00 0.00 4.69
320 321 0.320771 ACTCATTGCTGGACACCGAC 60.321 55.000 0.00 0.00 0.00 4.79
321 322 0.320683 CTCATTGCTGGACACCGACA 60.321 55.000 0.00 0.00 0.00 4.35
322 323 0.107643 TCATTGCTGGACACCGACAA 59.892 50.000 0.00 0.00 0.00 3.18
323 324 0.518636 CATTGCTGGACACCGACAAG 59.481 55.000 0.00 0.00 0.00 3.16
324 325 0.396435 ATTGCTGGACACCGACAAGA 59.604 50.000 0.00 0.00 0.00 3.02
325 326 0.249868 TTGCTGGACACCGACAAGAG 60.250 55.000 0.00 0.00 0.00 2.85
326 327 1.374758 GCTGGACACCGACAAGAGG 60.375 63.158 0.00 0.00 0.00 3.69
327 328 2.050269 CTGGACACCGACAAGAGGT 58.950 57.895 0.00 0.00 43.97 3.85
332 333 2.031163 ACCGACAAGAGGTGCAGC 59.969 61.111 8.11 8.11 41.10 5.25
333 334 2.345244 CCGACAAGAGGTGCAGCT 59.655 61.111 20.31 20.31 0.00 4.24
334 335 1.302033 CCGACAAGAGGTGCAGCTT 60.302 57.895 21.18 3.24 0.00 3.74
335 336 1.294659 CCGACAAGAGGTGCAGCTTC 61.295 60.000 21.18 12.37 0.00 3.86
336 337 1.621301 CGACAAGAGGTGCAGCTTCG 61.621 60.000 21.18 20.23 0.00 3.79
337 338 0.601311 GACAAGAGGTGCAGCTTCGT 60.601 55.000 21.18 16.68 0.00 3.85
338 339 0.601311 ACAAGAGGTGCAGCTTCGTC 60.601 55.000 21.18 7.35 0.00 4.20
339 340 1.373497 AAGAGGTGCAGCTTCGTCG 60.373 57.895 21.18 0.00 0.00 5.12
340 341 3.482783 GAGGTGCAGCTTCGTCGC 61.483 66.667 21.18 1.67 0.00 5.19
343 344 4.122515 GTGCAGCTTCGTCGCGTC 62.123 66.667 5.77 0.00 34.40 5.19
346 347 3.470567 CAGCTTCGTCGCGTCCAC 61.471 66.667 5.77 0.00 34.40 4.02
347 348 4.719369 AGCTTCGTCGCGTCCACC 62.719 66.667 5.77 0.00 34.40 4.61
348 349 4.719369 GCTTCGTCGCGTCCACCT 62.719 66.667 5.77 0.00 0.00 4.00
349 350 2.504244 CTTCGTCGCGTCCACCTC 60.504 66.667 5.77 0.00 0.00 3.85
350 351 3.263503 CTTCGTCGCGTCCACCTCA 62.264 63.158 5.77 0.00 0.00 3.86
351 352 3.263503 TTCGTCGCGTCCACCTCAG 62.264 63.158 5.77 0.00 0.00 3.35
353 354 4.057428 GTCGCGTCCACCTCAGCT 62.057 66.667 5.77 0.00 0.00 4.24
354 355 3.749064 TCGCGTCCACCTCAGCTC 61.749 66.667 5.77 0.00 0.00 4.09
355 356 4.803426 CGCGTCCACCTCAGCTCC 62.803 72.222 0.00 0.00 0.00 4.70
356 357 3.386237 GCGTCCACCTCAGCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
357 358 2.888863 CGTCCACCTCAGCTCCTC 59.111 66.667 0.00 0.00 0.00 3.71
358 359 1.680651 CGTCCACCTCAGCTCCTCT 60.681 63.158 0.00 0.00 0.00 3.69
359 360 1.896694 GTCCACCTCAGCTCCTCTG 59.103 63.158 0.00 0.00 44.21 3.35
366 367 2.560954 TCAGCTCCTCTGAGTCACG 58.439 57.895 3.66 0.00 46.34 4.35
367 368 0.036875 TCAGCTCCTCTGAGTCACGA 59.963 55.000 3.66 0.00 46.34 4.35
368 369 1.102154 CAGCTCCTCTGAGTCACGAT 58.898 55.000 3.66 0.00 45.72 3.73
369 370 1.102154 AGCTCCTCTGAGTCACGATG 58.898 55.000 3.66 0.00 40.95 3.84
370 371 0.814457 GCTCCTCTGAGTCACGATGT 59.186 55.000 3.66 0.00 40.95 3.06
371 372 2.017782 GCTCCTCTGAGTCACGATGTA 58.982 52.381 3.66 0.00 40.95 2.29
372 373 2.423892 GCTCCTCTGAGTCACGATGTAA 59.576 50.000 3.66 0.00 40.95 2.41
373 374 3.119459 GCTCCTCTGAGTCACGATGTAAA 60.119 47.826 3.66 0.00 40.95 2.01
374 375 4.618460 GCTCCTCTGAGTCACGATGTAAAA 60.618 45.833 3.66 0.00 40.95 1.52
375 376 5.060662 TCCTCTGAGTCACGATGTAAAAG 57.939 43.478 3.66 0.00 0.00 2.27
376 377 4.082190 TCCTCTGAGTCACGATGTAAAAGG 60.082 45.833 3.66 0.00 0.00 3.11
377 378 3.585862 TCTGAGTCACGATGTAAAAGGC 58.414 45.455 0.00 0.00 0.00 4.35
378 379 3.006430 TCTGAGTCACGATGTAAAAGGCA 59.994 43.478 0.00 0.00 0.00 4.75
379 380 3.935203 CTGAGTCACGATGTAAAAGGCAT 59.065 43.478 0.00 0.00 0.00 4.40
380 381 5.079689 TGAGTCACGATGTAAAAGGCATA 57.920 39.130 0.00 0.00 0.00 3.14
381 382 5.483811 TGAGTCACGATGTAAAAGGCATAA 58.516 37.500 0.00 0.00 0.00 1.90
382 383 5.935206 TGAGTCACGATGTAAAAGGCATAAA 59.065 36.000 0.00 0.00 0.00 1.40
383 384 6.428465 TGAGTCACGATGTAAAAGGCATAAAA 59.572 34.615 0.00 0.00 0.00 1.52
384 385 7.041030 TGAGTCACGATGTAAAAGGCATAAAAA 60.041 33.333 0.00 0.00 0.00 1.94
400 401 2.602257 AAAAACAGGCAGTGGAAAGC 57.398 45.000 0.00 0.00 0.00 3.51
401 402 0.385390 AAAACAGGCAGTGGAAAGCG 59.615 50.000 0.00 0.00 0.00 4.68
402 403 1.455383 AAACAGGCAGTGGAAAGCGG 61.455 55.000 0.00 0.00 0.00 5.52
403 404 3.058160 CAGGCAGTGGAAAGCGGG 61.058 66.667 0.00 0.00 0.00 6.13
406 407 2.985847 GCAGTGGAAAGCGGGCTT 60.986 61.111 0.00 0.00 37.98 4.35
407 408 2.982744 GCAGTGGAAAGCGGGCTTC 61.983 63.158 6.35 0.90 34.84 3.86
408 409 1.600636 CAGTGGAAAGCGGGCTTCA 60.601 57.895 6.35 0.00 34.84 3.02
409 410 1.150536 AGTGGAAAGCGGGCTTCAA 59.849 52.632 6.35 0.00 34.84 2.69
410 411 0.890996 AGTGGAAAGCGGGCTTCAAG 60.891 55.000 6.35 0.00 34.84 3.02
411 412 0.889186 GTGGAAAGCGGGCTTCAAGA 60.889 55.000 6.35 0.00 34.84 3.02
412 413 0.889186 TGGAAAGCGGGCTTCAAGAC 60.889 55.000 6.35 0.00 34.84 3.01
413 414 1.587043 GGAAAGCGGGCTTCAAGACC 61.587 60.000 0.00 0.00 41.17 3.85
414 415 0.889186 GAAAGCGGGCTTCAAGACCA 60.889 55.000 10.86 0.00 46.60 4.02
415 416 0.467290 AAAGCGGGCTTCAAGACCAA 60.467 50.000 10.86 0.00 46.60 3.67
416 417 0.251341 AAGCGGGCTTCAAGACCAAT 60.251 50.000 10.86 0.00 46.60 3.16
417 418 0.618458 AGCGGGCTTCAAGACCAATA 59.382 50.000 10.86 0.00 46.60 1.90
418 419 1.004277 AGCGGGCTTCAAGACCAATAA 59.996 47.619 10.86 0.00 46.60 1.40
419 420 1.816224 GCGGGCTTCAAGACCAATAAA 59.184 47.619 10.86 0.00 46.60 1.40
420 421 2.230266 GCGGGCTTCAAGACCAATAAAA 59.770 45.455 10.86 0.00 46.60 1.52
421 422 3.305744 GCGGGCTTCAAGACCAATAAAAA 60.306 43.478 10.86 0.00 46.60 1.94
422 423 4.620567 GCGGGCTTCAAGACCAATAAAAAT 60.621 41.667 10.86 0.00 46.60 1.82
423 424 5.393678 GCGGGCTTCAAGACCAATAAAAATA 60.394 40.000 10.86 0.00 46.60 1.40
424 425 6.033966 CGGGCTTCAAGACCAATAAAAATAC 58.966 40.000 10.86 0.00 46.60 1.89
425 426 6.338146 GGGCTTCAAGACCAATAAAAATACC 58.662 40.000 3.56 0.00 45.15 2.73
426 427 6.338146 GGCTTCAAGACCAATAAAAATACCC 58.662 40.000 0.00 0.00 0.00 3.69
427 428 6.071051 GGCTTCAAGACCAATAAAAATACCCA 60.071 38.462 0.00 0.00 0.00 4.51
428 429 7.382898 GCTTCAAGACCAATAAAAATACCCAA 58.617 34.615 0.00 0.00 0.00 4.12
429 430 7.330946 GCTTCAAGACCAATAAAAATACCCAAC 59.669 37.037 0.00 0.00 0.00 3.77
430 431 8.485578 TTCAAGACCAATAAAAATACCCAACT 57.514 30.769 0.00 0.00 0.00 3.16
431 432 9.589461 TTCAAGACCAATAAAAATACCCAACTA 57.411 29.630 0.00 0.00 0.00 2.24
432 433 9.589461 TCAAGACCAATAAAAATACCCAACTAA 57.411 29.630 0.00 0.00 0.00 2.24
433 434 9.634163 CAAGACCAATAAAAATACCCAACTAAC 57.366 33.333 0.00 0.00 0.00 2.34
434 435 8.943594 AGACCAATAAAAATACCCAACTAACA 57.056 30.769 0.00 0.00 0.00 2.41
435 436 8.799367 AGACCAATAAAAATACCCAACTAACAC 58.201 33.333 0.00 0.00 0.00 3.32
436 437 7.898918 ACCAATAAAAATACCCAACTAACACC 58.101 34.615 0.00 0.00 0.00 4.16
437 438 7.509659 ACCAATAAAAATACCCAACTAACACCA 59.490 33.333 0.00 0.00 0.00 4.17
438 439 8.368668 CCAATAAAAATACCCAACTAACACCAA 58.631 33.333 0.00 0.00 0.00 3.67
439 440 9.765795 CAATAAAAATACCCAACTAACACCAAA 57.234 29.630 0.00 0.00 0.00 3.28
443 444 9.990360 AAAAATACCCAACTAACACCAAAATAG 57.010 29.630 0.00 0.00 0.00 1.73
444 445 7.712204 AATACCCAACTAACACCAAAATAGG 57.288 36.000 0.00 0.00 0.00 2.57
445 446 4.412843 ACCCAACTAACACCAAAATAGGG 58.587 43.478 0.00 0.00 38.52 3.53
446 447 3.767131 CCCAACTAACACCAAAATAGGGG 59.233 47.826 0.00 0.00 38.34 4.79
447 448 3.194755 CCAACTAACACCAAAATAGGGGC 59.805 47.826 0.00 0.00 34.56 5.80
448 449 3.818295 ACTAACACCAAAATAGGGGCA 57.182 42.857 0.00 0.00 34.56 5.36
449 450 4.120946 ACTAACACCAAAATAGGGGCAA 57.879 40.909 0.00 0.00 34.56 4.52
450 451 4.484912 ACTAACACCAAAATAGGGGCAAA 58.515 39.130 0.00 0.00 34.56 3.68
451 452 5.090845 ACTAACACCAAAATAGGGGCAAAT 58.909 37.500 0.00 0.00 34.56 2.32
452 453 3.979101 ACACCAAAATAGGGGCAAATG 57.021 42.857 0.00 0.00 34.56 2.32
453 454 3.515562 ACACCAAAATAGGGGCAAATGA 58.484 40.909 0.00 0.00 34.56 2.57
454 455 3.906846 ACACCAAAATAGGGGCAAATGAA 59.093 39.130 0.00 0.00 34.56 2.57
455 456 4.349342 ACACCAAAATAGGGGCAAATGAAA 59.651 37.500 0.00 0.00 34.56 2.69
456 457 5.163152 ACACCAAAATAGGGGCAAATGAAAA 60.163 36.000 0.00 0.00 34.56 2.29
457 458 5.767168 CACCAAAATAGGGGCAAATGAAAAA 59.233 36.000 0.00 0.00 0.00 1.94
458 459 6.433716 CACCAAAATAGGGGCAAATGAAAAAT 59.566 34.615 0.00 0.00 0.00 1.82
459 460 7.009550 ACCAAAATAGGGGCAAATGAAAAATT 58.990 30.769 0.00 0.00 0.00 1.82
460 461 7.176515 ACCAAAATAGGGGCAAATGAAAAATTC 59.823 33.333 0.00 0.00 0.00 2.17
461 462 7.176340 CCAAAATAGGGGCAAATGAAAAATTCA 59.824 33.333 0.00 0.00 45.01 2.57
462 463 7.926674 AAATAGGGGCAAATGAAAAATTCAG 57.073 32.000 0.00 0.00 43.98 3.02
463 464 3.678289 AGGGGCAAATGAAAAATTCAGC 58.322 40.909 0.00 0.00 43.98 4.26
464 465 2.416202 GGGGCAAATGAAAAATTCAGCG 59.584 45.455 0.00 0.00 43.98 5.18
465 466 2.159667 GGGCAAATGAAAAATTCAGCGC 60.160 45.455 0.00 0.00 43.98 5.92
466 467 2.479656 GGCAAATGAAAAATTCAGCGCA 59.520 40.909 11.47 0.00 43.98 6.09
467 468 3.059051 GGCAAATGAAAAATTCAGCGCAA 60.059 39.130 11.47 0.00 43.98 4.85
468 469 4.525686 GCAAATGAAAAATTCAGCGCAAA 58.474 34.783 11.47 3.45 43.98 3.68
469 470 4.968788 GCAAATGAAAAATTCAGCGCAAAA 59.031 33.333 11.47 3.00 43.98 2.44
470 471 5.454877 GCAAATGAAAAATTCAGCGCAAAAA 59.545 32.000 11.47 0.00 43.98 1.94
471 472 6.344390 GCAAATGAAAAATTCAGCGCAAAAAG 60.344 34.615 11.47 0.00 43.98 2.27
472 473 5.989551 ATGAAAAATTCAGCGCAAAAAGT 57.010 30.435 11.47 0.00 43.98 2.66
473 474 5.793026 TGAAAAATTCAGCGCAAAAAGTT 57.207 30.435 11.47 3.03 34.08 2.66
474 475 6.893958 TGAAAAATTCAGCGCAAAAAGTTA 57.106 29.167 11.47 0.00 34.08 2.24
475 476 7.475771 TGAAAAATTCAGCGCAAAAAGTTAT 57.524 28.000 11.47 0.00 34.08 1.89
476 477 7.343691 TGAAAAATTCAGCGCAAAAAGTTATG 58.656 30.769 11.47 0.00 34.08 1.90
477 478 7.223582 TGAAAAATTCAGCGCAAAAAGTTATGA 59.776 29.630 11.47 0.00 34.08 2.15
478 479 7.475771 AAAATTCAGCGCAAAAAGTTATGAA 57.524 28.000 11.47 7.85 0.00 2.57
479 480 7.475771 AAATTCAGCGCAAAAAGTTATGAAA 57.524 28.000 11.47 0.00 0.00 2.69
480 481 5.881637 TTCAGCGCAAAAAGTTATGAAAC 57.118 34.783 11.47 0.00 35.72 2.78
481 482 4.926244 TCAGCGCAAAAAGTTATGAAACA 58.074 34.783 11.47 0.00 38.12 2.83
482 483 5.344066 TCAGCGCAAAAAGTTATGAAACAA 58.656 33.333 11.47 0.00 38.12 2.83
483 484 5.231147 TCAGCGCAAAAAGTTATGAAACAAC 59.769 36.000 11.47 0.00 38.12 3.32
484 485 5.005203 CAGCGCAAAAAGTTATGAAACAACA 59.995 36.000 11.47 0.00 38.12 3.33
485 486 5.005299 AGCGCAAAAAGTTATGAAACAACAC 59.995 36.000 11.47 0.00 38.12 3.32
486 487 5.220303 GCGCAAAAAGTTATGAAACAACACA 60.220 36.000 0.30 0.00 38.12 3.72
487 488 6.509358 GCGCAAAAAGTTATGAAACAACACAT 60.509 34.615 0.30 0.00 38.12 3.21
488 489 6.840292 CGCAAAAAGTTATGAAACAACACATG 59.160 34.615 0.00 0.00 38.12 3.21
489 490 7.253917 CGCAAAAAGTTATGAAACAACACATGA 60.254 33.333 0.00 0.00 38.12 3.07
490 491 8.386606 GCAAAAAGTTATGAAACAACACATGAA 58.613 29.630 0.00 0.00 38.12 2.57
516 517 8.862550 AAAAGAAAGACATCACAAATCTTCAC 57.137 30.769 0.00 0.00 31.44 3.18
517 518 7.572523 AAGAAAGACATCACAAATCTTCACA 57.427 32.000 0.00 0.00 31.44 3.58
518 519 7.572523 AGAAAGACATCACAAATCTTCACAA 57.427 32.000 0.00 0.00 31.44 3.33
519 520 7.999679 AGAAAGACATCACAAATCTTCACAAA 58.000 30.769 0.00 0.00 31.44 2.83
520 521 8.469200 AGAAAGACATCACAAATCTTCACAAAA 58.531 29.630 0.00 0.00 31.44 2.44
521 522 9.252962 GAAAGACATCACAAATCTTCACAAAAT 57.747 29.630 0.00 0.00 31.44 1.82
549 550 8.937634 TTTATAGTCAGAAAATCGACTTACCC 57.062 34.615 0.00 0.00 42.41 3.69
550 551 4.884668 AGTCAGAAAATCGACTTACCCA 57.115 40.909 0.00 0.00 39.45 4.51
551 552 5.223449 AGTCAGAAAATCGACTTACCCAA 57.777 39.130 0.00 0.00 39.45 4.12
552 553 5.617252 AGTCAGAAAATCGACTTACCCAAA 58.383 37.500 0.00 0.00 39.45 3.28
553 554 6.238648 AGTCAGAAAATCGACTTACCCAAAT 58.761 36.000 0.00 0.00 39.45 2.32
554 555 6.715264 AGTCAGAAAATCGACTTACCCAAATT 59.285 34.615 0.00 0.00 39.45 1.82
555 556 7.230712 AGTCAGAAAATCGACTTACCCAAATTT 59.769 33.333 0.00 0.00 39.45 1.82
556 557 7.865889 GTCAGAAAATCGACTTACCCAAATTTT 59.134 33.333 0.00 0.00 0.00 1.82
557 558 9.069082 TCAGAAAATCGACTTACCCAAATTTTA 57.931 29.630 0.00 0.00 0.00 1.52
558 559 9.685828 CAGAAAATCGACTTACCCAAATTTTAA 57.314 29.630 0.00 0.00 0.00 1.52
563 564 9.819267 AATCGACTTACCCAAATTTTAAAAACA 57.181 25.926 4.44 0.00 0.00 2.83
564 565 8.859517 TCGACTTACCCAAATTTTAAAAACAG 57.140 30.769 4.44 0.00 0.00 3.16
565 566 8.684520 TCGACTTACCCAAATTTTAAAAACAGA 58.315 29.630 4.44 0.00 0.00 3.41
566 567 8.748582 CGACTTACCCAAATTTTAAAAACAGAC 58.251 33.333 4.44 0.00 0.00 3.51
567 568 8.637281 ACTTACCCAAATTTTAAAAACAGACG 57.363 30.769 4.44 0.00 0.00 4.18
568 569 8.468399 ACTTACCCAAATTTTAAAAACAGACGA 58.532 29.630 4.44 0.00 0.00 4.20
569 570 8.631676 TTACCCAAATTTTAAAAACAGACGAC 57.368 30.769 4.44 0.00 0.00 4.34
570 571 6.869695 ACCCAAATTTTAAAAACAGACGACT 58.130 32.000 4.44 0.00 0.00 4.18
571 572 7.324935 ACCCAAATTTTAAAAACAGACGACTT 58.675 30.769 4.44 0.00 0.00 3.01
572 573 8.468399 ACCCAAATTTTAAAAACAGACGACTTA 58.532 29.630 4.44 0.00 0.00 2.24
573 574 8.748582 CCCAAATTTTAAAAACAGACGACTTAC 58.251 33.333 4.44 0.00 0.00 2.34
574 575 9.291664 CCAAATTTTAAAAACAGACGACTTACA 57.708 29.630 4.44 0.00 0.00 2.41
580 581 9.919348 TTTAAAAACAGACGACTTACATACAAC 57.081 29.630 0.00 0.00 0.00 3.32
581 582 7.542534 AAAAACAGACGACTTACATACAACA 57.457 32.000 0.00 0.00 0.00 3.33
582 583 6.764877 AAACAGACGACTTACATACAACAG 57.235 37.500 0.00 0.00 0.00 3.16
583 584 4.235360 ACAGACGACTTACATACAACAGC 58.765 43.478 0.00 0.00 0.00 4.40
584 585 4.022242 ACAGACGACTTACATACAACAGCT 60.022 41.667 0.00 0.00 0.00 4.24
585 586 5.182570 ACAGACGACTTACATACAACAGCTA 59.817 40.000 0.00 0.00 0.00 3.32
586 587 6.090783 CAGACGACTTACATACAACAGCTAA 58.909 40.000 0.00 0.00 0.00 3.09
587 588 6.584942 CAGACGACTTACATACAACAGCTAAA 59.415 38.462 0.00 0.00 0.00 1.85
588 589 6.807230 AGACGACTTACATACAACAGCTAAAG 59.193 38.462 0.00 0.00 0.00 1.85
589 590 6.453092 ACGACTTACATACAACAGCTAAAGT 58.547 36.000 0.00 0.00 0.00 2.66
590 591 6.365247 ACGACTTACATACAACAGCTAAAGTG 59.635 38.462 0.00 0.00 0.00 3.16
591 592 6.365247 CGACTTACATACAACAGCTAAAGTGT 59.635 38.462 0.00 0.00 0.00 3.55
592 593 7.539710 CGACTTACATACAACAGCTAAAGTGTA 59.460 37.037 0.00 0.00 0.00 2.90
593 594 9.367444 GACTTACATACAACAGCTAAAGTGTAT 57.633 33.333 0.00 0.00 0.00 2.29
594 595 9.720769 ACTTACATACAACAGCTAAAGTGTATT 57.279 29.630 7.62 4.47 0.00 1.89
656 657 2.550606 TGCAAAAAGTGGTGGTCGATAC 59.449 45.455 0.00 0.00 0.00 2.24
951 957 2.551912 CCAAGAACACCACCGTGCC 61.552 63.158 0.00 0.00 44.40 5.01
997 1003 1.379576 CCTACCCCGACTTCCGTCT 60.380 63.158 0.00 0.00 38.03 4.18
998 1004 0.969409 CCTACCCCGACTTCCGTCTT 60.969 60.000 0.00 0.00 38.03 3.01
1170 1177 3.050275 GTGGCGGTGACCAAGCTC 61.050 66.667 1.11 0.00 42.70 4.09
1219 1226 1.067071 CCACCTACTGGAACGACTTCC 60.067 57.143 0.00 0.00 43.95 3.46
1287 1294 3.855689 AAATTGAACCCATCGCTCTTG 57.144 42.857 0.00 0.00 0.00 3.02
1359 1366 4.925068 ACTGATTTGTGCACTTCTTCAAC 58.075 39.130 19.41 2.43 0.00 3.18
1368 1375 5.769662 TGTGCACTTCTTCAACATTAGGATT 59.230 36.000 19.41 0.00 0.00 3.01
1369 1376 6.939730 TGTGCACTTCTTCAACATTAGGATTA 59.060 34.615 19.41 0.00 0.00 1.75
1370 1377 7.611467 TGTGCACTTCTTCAACATTAGGATTAT 59.389 33.333 19.41 0.00 0.00 1.28
1371 1378 9.109393 GTGCACTTCTTCAACATTAGGATTATA 57.891 33.333 10.32 0.00 0.00 0.98
1405 1412 1.199097 CGCTGGTTGTGTTATTCACCC 59.801 52.381 0.00 0.00 45.61 4.61
1415 1422 2.486203 TGTTATTCACCCGTTGCATCAC 59.514 45.455 0.00 0.00 0.00 3.06
1472 1479 3.014085 ATGCTTGCCATGCACCTGC 62.014 57.895 7.48 0.00 43.59 4.85
1528 1535 2.068519 ACAGCACATGTCACGTGTATG 58.931 47.619 23.95 23.95 37.75 2.39
1534 1541 2.196749 CATGTCACGTGTATGCTCTCC 58.803 52.381 16.51 0.00 0.00 3.71
1537 1544 2.233676 TGTCACGTGTATGCTCTCCAAT 59.766 45.455 16.51 0.00 0.00 3.16
1560 1567 4.948341 TTTTAGCCCCAGAAAACCTTTC 57.052 40.909 0.00 0.00 0.00 2.62
1571 1578 2.793278 AAACCTTTCACCATGAACGC 57.207 45.000 0.00 0.00 35.89 4.84
1601 1608 6.788766 GCAAACTGCAAAAATACCAAAAAC 57.211 33.333 0.00 0.00 44.26 2.43
1605 1612 9.351570 CAAACTGCAAAAATACCAAAAACAAAT 57.648 25.926 0.00 0.00 0.00 2.32
1900 1908 0.550914 AGCAACCCTGACAACCTTCA 59.449 50.000 0.00 0.00 0.00 3.02
2282 2290 3.483558 GCTTGCTGAAACTGTTCTTTTCG 59.516 43.478 0.00 0.00 35.99 3.46
2324 2332 0.912487 TGGGGCAACGAAGGTATCCT 60.912 55.000 0.00 0.00 32.77 3.24
2800 2873 4.947645 TCATTTTTCCTTCACCTTTGCTG 58.052 39.130 0.00 0.00 0.00 4.41
2801 2874 4.405358 TCATTTTTCCTTCACCTTTGCTGT 59.595 37.500 0.00 0.00 0.00 4.40
2804 2877 4.385358 TTTCCTTCACCTTTGCTGTTTC 57.615 40.909 0.00 0.00 0.00 2.78
2805 2878 3.011566 TCCTTCACCTTTGCTGTTTCA 57.988 42.857 0.00 0.00 0.00 2.69
2969 4623 4.647399 CACCCTTTTGAACCCTGTTTCTTA 59.353 41.667 0.00 0.00 0.00 2.10
3309 4963 9.283768 TGTACAAAGAAACTACACAATCATGAT 57.716 29.630 1.18 1.18 0.00 2.45
3546 5201 3.492829 CCCGGTAGAGAAGCTGTAAATCC 60.493 52.174 0.00 0.00 0.00 3.01
3613 5268 7.836685 TCCCTGATCATAGATATAGGAGTTGTC 59.163 40.741 0.00 0.00 0.00 3.18
3620 5275 7.937394 TCATAGATATAGGAGTTGTCGTTCTGA 59.063 37.037 0.00 0.00 0.00 3.27
3737 5392 4.269844 CGATGGTTGTTTTGTTCTTTTGGG 59.730 41.667 0.00 0.00 0.00 4.12
3742 5397 5.106869 GGTTGTTTTGTTCTTTTGGGTTGTC 60.107 40.000 0.00 0.00 0.00 3.18
3774 5429 4.690122 GGATGAAATTCTGGGAAGCATTG 58.310 43.478 0.00 0.00 0.00 2.82
3778 5433 0.688749 ATTCTGGGAAGCATTGGCCC 60.689 55.000 0.00 0.00 42.56 5.80
3797 5452 3.057245 GCCCAAGACAAAAATCCTGAGAC 60.057 47.826 0.00 0.00 0.00 3.36
3800 5455 3.126001 AGACAAAAATCCTGAGACGCA 57.874 42.857 0.00 0.00 0.00 5.24
3817 5472 1.000233 GCAACAGACATGCGTGCAAG 61.000 55.000 5.64 0.00 39.45 4.01
3870 5525 6.462552 TTTGAATTTCTTGGTGTGTGATCA 57.537 33.333 0.00 0.00 0.00 2.92
3972 5629 1.301795 GGGCTGTAATCGCTAGGGC 60.302 63.158 1.02 0.00 0.00 5.19
4005 5662 1.181786 GATCCTCTAGATCCCTGGCG 58.818 60.000 0.00 0.00 45.00 5.69
4006 5663 0.780637 ATCCTCTAGATCCCTGGCGA 59.219 55.000 0.00 0.00 0.00 5.54
4008 5665 1.182385 CCTCTAGATCCCTGGCGACC 61.182 65.000 0.00 0.00 0.00 4.79
4010 5667 0.755698 TCTAGATCCCTGGCGACCAC 60.756 60.000 0.00 0.00 0.00 4.16
4031 5804 9.391006 GACCACCTGATAATAAACATTACAAGA 57.609 33.333 0.00 0.00 0.00 3.02
4057 5830 2.090663 AGTAGGGTCTTACCTCATCCCC 60.091 54.545 0.00 0.00 42.09 4.81
4058 5831 0.029989 AGGGTCTTACCTCATCCCCC 60.030 60.000 0.00 0.00 38.64 5.40
4084 5863 1.330655 GCTCGAATCTGGGTCAGGGA 61.331 60.000 0.00 0.00 31.51 4.20
4086 5865 1.141881 CGAATCTGGGTCAGGGACG 59.858 63.158 0.00 0.00 32.65 4.79
4103 5945 3.131577 GGGACGGACACATAATGTACTGA 59.868 47.826 0.00 0.00 43.56 3.41
4139 5981 4.535526 AAGGTACATTTGAATTGTGCCC 57.464 40.909 19.08 11.28 38.77 5.36
4256 6098 1.134401 ACCAATACTCACATGCTCCCG 60.134 52.381 0.00 0.00 0.00 5.14
4278 6120 5.277825 CGTGCTACCAACTTGAAAAATTCA 58.722 37.500 0.00 0.00 38.04 2.57
4333 6175 4.525996 TCATGGATGTTCCCAACACATAG 58.474 43.478 0.00 0.00 45.50 2.23
4388 6230 7.581213 ACTTGAAATACACATGGAGAAACAA 57.419 32.000 0.00 0.00 0.00 2.83
4392 6234 8.870160 TGAAATACACATGGAGAAACAAAAAG 57.130 30.769 0.00 0.00 0.00 2.27
4407 6249 8.260114 AGAAACAAAAAGGACAAATTCAGATGT 58.740 29.630 0.00 0.00 0.00 3.06
4430 6272 8.129161 TGTGAATAGTGTCATTTTTGCTTTTG 57.871 30.769 0.00 0.00 0.00 2.44
4453 6295 7.439157 TGTCTTCTTTTGACACTATTCATGG 57.561 36.000 0.00 0.00 39.23 3.66
4490 6332 5.524511 TTGTTTCTCGATGTGTATTTCGG 57.475 39.130 0.00 0.00 36.08 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.098607 TGGGCGATAAGTGTAGAAGACG 59.901 50.000 0.00 0.00 0.00 4.18
1 2 3.795623 TGGGCGATAAGTGTAGAAGAC 57.204 47.619 0.00 0.00 0.00 3.01
2 3 4.649674 AGATTGGGCGATAAGTGTAGAAGA 59.350 41.667 0.00 0.00 0.00 2.87
3 4 4.950050 AGATTGGGCGATAAGTGTAGAAG 58.050 43.478 0.00 0.00 0.00 2.85
4 5 5.353394 AAGATTGGGCGATAAGTGTAGAA 57.647 39.130 0.00 0.00 0.00 2.10
5 6 5.353394 AAAGATTGGGCGATAAGTGTAGA 57.647 39.130 0.00 0.00 0.00 2.59
6 7 4.209288 CGAAAGATTGGGCGATAAGTGTAG 59.791 45.833 0.00 0.00 0.00 2.74
7 8 4.116961 CGAAAGATTGGGCGATAAGTGTA 58.883 43.478 0.00 0.00 0.00 2.90
8 9 2.936498 CGAAAGATTGGGCGATAAGTGT 59.064 45.455 0.00 0.00 0.00 3.55
9 10 2.286418 GCGAAAGATTGGGCGATAAGTG 60.286 50.000 0.00 0.00 0.00 3.16
10 11 1.940613 GCGAAAGATTGGGCGATAAGT 59.059 47.619 0.00 0.00 0.00 2.24
11 12 1.264288 GGCGAAAGATTGGGCGATAAG 59.736 52.381 0.00 0.00 0.00 1.73
12 13 1.134220 AGGCGAAAGATTGGGCGATAA 60.134 47.619 0.00 0.00 38.94 1.75
13 14 0.468226 AGGCGAAAGATTGGGCGATA 59.532 50.000 0.00 0.00 38.94 2.92
14 15 0.815615 GAGGCGAAAGATTGGGCGAT 60.816 55.000 0.00 0.00 38.94 4.58
15 16 1.449601 GAGGCGAAAGATTGGGCGA 60.450 57.895 0.00 0.00 38.94 5.54
16 17 2.472909 GGAGGCGAAAGATTGGGCG 61.473 63.158 0.00 0.00 38.94 6.13
17 18 1.077429 AGGAGGCGAAAGATTGGGC 60.077 57.895 0.00 0.00 0.00 5.36
18 19 0.543749 AGAGGAGGCGAAAGATTGGG 59.456 55.000 0.00 0.00 0.00 4.12
19 20 1.065854 ACAGAGGAGGCGAAAGATTGG 60.066 52.381 0.00 0.00 0.00 3.16
20 21 2.275318 GACAGAGGAGGCGAAAGATTG 58.725 52.381 0.00 0.00 0.00 2.67
21 22 1.902508 TGACAGAGGAGGCGAAAGATT 59.097 47.619 0.00 0.00 0.00 2.40
22 23 1.205893 GTGACAGAGGAGGCGAAAGAT 59.794 52.381 0.00 0.00 0.00 2.40
23 24 0.603569 GTGACAGAGGAGGCGAAAGA 59.396 55.000 0.00 0.00 0.00 2.52
24 25 0.390472 GGTGACAGAGGAGGCGAAAG 60.390 60.000 0.00 0.00 0.00 2.62
25 26 1.671742 GGTGACAGAGGAGGCGAAA 59.328 57.895 0.00 0.00 0.00 3.46
26 27 2.636412 CGGTGACAGAGGAGGCGAA 61.636 63.158 0.00 0.00 0.00 4.70
27 28 3.062466 CGGTGACAGAGGAGGCGA 61.062 66.667 0.00 0.00 0.00 5.54
28 29 4.135153 CCGGTGACAGAGGAGGCG 62.135 72.222 0.00 0.00 0.00 5.52
29 30 4.459089 GCCGGTGACAGAGGAGGC 62.459 72.222 1.90 0.00 37.61 4.70
30 31 4.135153 CGCCGGTGACAGAGGAGG 62.135 72.222 10.20 0.00 0.00 4.30
31 32 4.135153 CCGCCGGTGACAGAGGAG 62.135 72.222 18.79 0.00 0.00 3.69
32 33 4.671590 TCCGCCGGTGACAGAGGA 62.672 66.667 18.79 0.06 0.00 3.71
33 34 4.135153 CTCCGCCGGTGACAGAGG 62.135 72.222 18.79 0.00 0.00 3.69
34 35 4.803426 GCTCCGCCGGTGACAGAG 62.803 72.222 18.79 15.61 0.00 3.35
35 36 3.931190 TAGCTCCGCCGGTGACAGA 62.931 63.158 18.79 4.23 0.00 3.41
36 37 3.449227 TAGCTCCGCCGGTGACAG 61.449 66.667 18.79 12.98 0.00 3.51
37 38 3.755628 GTAGCTCCGCCGGTGACA 61.756 66.667 18.79 0.88 0.00 3.58
38 39 3.755628 TGTAGCTCCGCCGGTGAC 61.756 66.667 18.79 6.72 0.00 3.67
39 40 3.755628 GTGTAGCTCCGCCGGTGA 61.756 66.667 18.79 6.07 0.00 4.02
40 41 4.063967 TGTGTAGCTCCGCCGGTG 62.064 66.667 8.42 8.42 0.00 4.94
41 42 4.065281 GTGTGTAGCTCCGCCGGT 62.065 66.667 1.63 0.00 0.00 5.28
42 43 3.583276 TTGTGTGTAGCTCCGCCGG 62.583 63.158 0.00 0.00 0.00 6.13
43 44 2.048597 TTGTGTGTAGCTCCGCCG 60.049 61.111 0.00 0.00 0.00 6.46
44 45 1.004918 ACTTGTGTGTAGCTCCGCC 60.005 57.895 0.00 0.00 0.00 6.13
45 46 0.038159 AGACTTGTGTGTAGCTCCGC 60.038 55.000 0.00 0.00 0.00 5.54
46 47 1.702886 CAGACTTGTGTGTAGCTCCG 58.297 55.000 0.00 0.00 0.00 4.63
47 48 1.270305 TGCAGACTTGTGTGTAGCTCC 60.270 52.381 0.00 0.00 0.00 4.70
48 49 2.064762 CTGCAGACTTGTGTGTAGCTC 58.935 52.381 8.42 0.00 0.00 4.09
49 50 1.270518 CCTGCAGACTTGTGTGTAGCT 60.271 52.381 17.39 0.00 0.00 3.32
50 51 1.151668 CCTGCAGACTTGTGTGTAGC 58.848 55.000 17.39 0.00 0.00 3.58
51 52 1.609061 CCCCTGCAGACTTGTGTGTAG 60.609 57.143 17.39 8.56 0.00 2.74
52 53 0.396435 CCCCTGCAGACTTGTGTGTA 59.604 55.000 17.39 0.00 0.00 2.90
53 54 1.149174 CCCCTGCAGACTTGTGTGT 59.851 57.895 17.39 0.00 0.00 3.72
54 55 2.263741 GCCCCTGCAGACTTGTGTG 61.264 63.158 17.39 0.00 37.47 3.82
55 56 2.113986 GCCCCTGCAGACTTGTGT 59.886 61.111 17.39 0.00 37.47 3.72
56 57 2.674380 GGCCCCTGCAGACTTGTG 60.674 66.667 17.39 0.00 40.13 3.33
57 58 2.541907 ATGGCCCCTGCAGACTTGT 61.542 57.895 17.39 0.00 40.13 3.16
58 59 2.050350 CATGGCCCCTGCAGACTTG 61.050 63.158 17.39 7.16 40.13 3.16
59 60 2.357836 CATGGCCCCTGCAGACTT 59.642 61.111 17.39 0.00 40.13 3.01
60 61 4.437587 GCATGGCCCCTGCAGACT 62.438 66.667 17.39 0.00 39.46 3.24
81 82 0.897621 GATTTTGTTCAGGCTGGGGG 59.102 55.000 15.73 0.00 0.00 5.40
82 83 1.821136 GAGATTTTGTTCAGGCTGGGG 59.179 52.381 15.73 0.00 0.00 4.96
83 84 2.800250 AGAGATTTTGTTCAGGCTGGG 58.200 47.619 15.73 0.00 0.00 4.45
84 85 5.707298 TCTTTAGAGATTTTGTTCAGGCTGG 59.293 40.000 15.73 0.00 0.00 4.85
85 86 6.808008 TCTTTAGAGATTTTGTTCAGGCTG 57.192 37.500 8.58 8.58 0.00 4.85
86 87 7.001073 AGTTCTTTAGAGATTTTGTTCAGGCT 58.999 34.615 0.00 0.00 0.00 4.58
87 88 7.208225 AGTTCTTTAGAGATTTTGTTCAGGC 57.792 36.000 0.00 0.00 0.00 4.85
113 114 8.664669 ATTTCCAATTAAGCCTCTCCTAAAAA 57.335 30.769 0.00 0.00 0.00 1.94
114 115 9.408648 CTATTTCCAATTAAGCCTCTCCTAAAA 57.591 33.333 0.00 0.00 0.00 1.52
115 116 8.778059 TCTATTTCCAATTAAGCCTCTCCTAAA 58.222 33.333 0.00 0.00 0.00 1.85
116 117 8.331931 TCTATTTCCAATTAAGCCTCTCCTAA 57.668 34.615 0.00 0.00 0.00 2.69
117 118 7.931015 TCTATTTCCAATTAAGCCTCTCCTA 57.069 36.000 0.00 0.00 0.00 2.94
118 119 6.831664 TCTATTTCCAATTAAGCCTCTCCT 57.168 37.500 0.00 0.00 0.00 3.69
119 120 7.057264 ACTTCTATTTCCAATTAAGCCTCTCC 58.943 38.462 0.00 0.00 0.00 3.71
120 121 7.990314 AGACTTCTATTTCCAATTAAGCCTCTC 59.010 37.037 0.00 0.00 0.00 3.20
121 122 7.866870 AGACTTCTATTTCCAATTAAGCCTCT 58.133 34.615 0.00 0.00 0.00 3.69
122 123 8.512966 AAGACTTCTATTTCCAATTAAGCCTC 57.487 34.615 0.00 0.00 0.00 4.70
123 124 8.885693 AAAGACTTCTATTTCCAATTAAGCCT 57.114 30.769 0.00 0.00 0.00 4.58
124 125 9.358872 CAAAAGACTTCTATTTCCAATTAAGCC 57.641 33.333 0.00 0.00 0.00 4.35
125 126 9.358872 CCAAAAGACTTCTATTTCCAATTAAGC 57.641 33.333 0.00 0.00 0.00 3.09
126 127 9.358872 GCCAAAAGACTTCTATTTCCAATTAAG 57.641 33.333 0.00 0.00 0.00 1.85
127 128 8.311109 GGCCAAAAGACTTCTATTTCCAATTAA 58.689 33.333 0.00 0.00 0.00 1.40
128 129 7.093509 GGGCCAAAAGACTTCTATTTCCAATTA 60.094 37.037 4.39 0.00 0.00 1.40
129 130 6.295859 GGGCCAAAAGACTTCTATTTCCAATT 60.296 38.462 4.39 0.00 0.00 2.32
130 131 5.187772 GGGCCAAAAGACTTCTATTTCCAAT 59.812 40.000 4.39 0.00 0.00 3.16
131 132 4.526650 GGGCCAAAAGACTTCTATTTCCAA 59.473 41.667 4.39 0.00 0.00 3.53
132 133 4.086457 GGGCCAAAAGACTTCTATTTCCA 58.914 43.478 4.39 0.00 0.00 3.53
133 134 3.447586 GGGGCCAAAAGACTTCTATTTCC 59.552 47.826 4.39 0.00 0.00 3.13
134 135 3.447586 GGGGGCCAAAAGACTTCTATTTC 59.552 47.826 4.39 0.00 0.00 2.17
135 136 3.077543 AGGGGGCCAAAAGACTTCTATTT 59.922 43.478 4.39 0.00 0.00 1.40
136 137 2.654896 AGGGGGCCAAAAGACTTCTATT 59.345 45.455 4.39 0.00 0.00 1.73
137 138 2.242452 GAGGGGGCCAAAAGACTTCTAT 59.758 50.000 4.39 0.00 0.00 1.98
138 139 1.633945 GAGGGGGCCAAAAGACTTCTA 59.366 52.381 4.39 0.00 0.00 2.10
139 140 0.405973 GAGGGGGCCAAAAGACTTCT 59.594 55.000 4.39 0.00 0.00 2.85
140 141 0.112412 TGAGGGGGCCAAAAGACTTC 59.888 55.000 4.39 0.00 0.00 3.01
141 142 0.113190 CTGAGGGGGCCAAAAGACTT 59.887 55.000 4.39 0.00 0.00 3.01
142 143 0.772124 TCTGAGGGGGCCAAAAGACT 60.772 55.000 4.39 0.00 0.00 3.24
143 144 0.112412 TTCTGAGGGGGCCAAAAGAC 59.888 55.000 4.39 0.00 0.00 3.01
144 145 0.856982 TTTCTGAGGGGGCCAAAAGA 59.143 50.000 4.39 0.00 0.00 2.52
145 146 1.942776 ATTTCTGAGGGGGCCAAAAG 58.057 50.000 4.39 0.00 0.00 2.27
146 147 2.414250 AATTTCTGAGGGGGCCAAAA 57.586 45.000 4.39 0.00 0.00 2.44
147 148 2.414250 AAATTTCTGAGGGGGCCAAA 57.586 45.000 4.39 0.00 0.00 3.28
148 149 3.181412 ACTTAAATTTCTGAGGGGGCCAA 60.181 43.478 4.39 0.00 0.00 4.52
149 150 2.381961 ACTTAAATTTCTGAGGGGGCCA 59.618 45.455 4.39 0.00 0.00 5.36
150 151 3.101643 ACTTAAATTTCTGAGGGGGCC 57.898 47.619 0.00 0.00 0.00 5.80
151 152 5.221641 ACAAAACTTAAATTTCTGAGGGGGC 60.222 40.000 0.00 0.00 0.00 5.80
152 153 6.419484 ACAAAACTTAAATTTCTGAGGGGG 57.581 37.500 0.00 0.00 0.00 5.40
153 154 6.267699 AGGACAAAACTTAAATTTCTGAGGGG 59.732 38.462 0.00 0.00 0.00 4.79
154 155 7.290110 AGGACAAAACTTAAATTTCTGAGGG 57.710 36.000 0.00 0.00 0.00 4.30
155 156 7.653311 CCAAGGACAAAACTTAAATTTCTGAGG 59.347 37.037 0.00 0.00 0.00 3.86
156 157 7.169813 GCCAAGGACAAAACTTAAATTTCTGAG 59.830 37.037 0.00 0.00 0.00 3.35
157 158 6.983890 GCCAAGGACAAAACTTAAATTTCTGA 59.016 34.615 0.00 0.00 0.00 3.27
158 159 6.202762 GGCCAAGGACAAAACTTAAATTTCTG 59.797 38.462 0.00 0.00 0.00 3.02
159 160 6.288294 GGCCAAGGACAAAACTTAAATTTCT 58.712 36.000 0.00 0.00 0.00 2.52
160 161 5.468746 GGGCCAAGGACAAAACTTAAATTTC 59.531 40.000 4.39 0.00 0.00 2.17
161 162 5.373222 GGGCCAAGGACAAAACTTAAATTT 58.627 37.500 4.39 0.00 0.00 1.82
162 163 4.202419 GGGGCCAAGGACAAAACTTAAATT 60.202 41.667 4.39 0.00 0.00 1.82
163 164 3.326588 GGGGCCAAGGACAAAACTTAAAT 59.673 43.478 4.39 0.00 0.00 1.40
164 165 2.701423 GGGGCCAAGGACAAAACTTAAA 59.299 45.455 4.39 0.00 0.00 1.52
165 166 2.090999 AGGGGCCAAGGACAAAACTTAA 60.091 45.455 4.39 0.00 0.00 1.85
166 167 1.501604 AGGGGCCAAGGACAAAACTTA 59.498 47.619 4.39 0.00 0.00 2.24
167 168 0.264657 AGGGGCCAAGGACAAAACTT 59.735 50.000 4.39 0.00 0.00 2.66
168 169 0.178961 GAGGGGCCAAGGACAAAACT 60.179 55.000 4.39 0.00 0.00 2.66
169 170 1.185618 GGAGGGGCCAAGGACAAAAC 61.186 60.000 4.39 0.00 36.34 2.43
170 171 1.155155 GGAGGGGCCAAGGACAAAA 59.845 57.895 4.39 0.00 36.34 2.44
171 172 2.088096 TGGAGGGGCCAAGGACAAA 61.088 57.895 4.39 0.00 45.87 2.83
172 173 2.451493 TGGAGGGGCCAAGGACAA 60.451 61.111 4.39 0.00 45.87 3.18
190 191 0.813210 CGGAGCTTCAGAGGAATGCC 60.813 60.000 0.00 0.00 31.62 4.40
191 192 2.687842 CGGAGCTTCAGAGGAATGC 58.312 57.895 0.00 0.00 31.34 3.56
205 206 0.671251 GACAGAGGATAGTGGCGGAG 59.329 60.000 0.00 0.00 0.00 4.63
206 207 0.033503 TGACAGAGGATAGTGGCGGA 60.034 55.000 0.00 0.00 0.00 5.54
207 208 1.043816 ATGACAGAGGATAGTGGCGG 58.956 55.000 0.00 0.00 0.00 6.13
208 209 1.269988 CCATGACAGAGGATAGTGGCG 60.270 57.143 0.00 0.00 0.00 5.69
209 210 1.542108 GCCATGACAGAGGATAGTGGC 60.542 57.143 0.00 0.00 43.09 5.01
210 211 1.071385 GGCCATGACAGAGGATAGTGG 59.929 57.143 0.00 0.00 0.00 4.00
211 212 1.764723 TGGCCATGACAGAGGATAGTG 59.235 52.381 0.00 0.00 0.00 2.74
212 213 2.180946 TGGCCATGACAGAGGATAGT 57.819 50.000 0.00 0.00 0.00 2.12
213 214 2.437281 ACTTGGCCATGACAGAGGATAG 59.563 50.000 24.48 8.32 0.00 2.08
214 215 2.435805 GACTTGGCCATGACAGAGGATA 59.564 50.000 24.48 0.00 0.00 2.59
215 216 1.211457 GACTTGGCCATGACAGAGGAT 59.789 52.381 24.48 0.00 0.00 3.24
216 217 0.615331 GACTTGGCCATGACAGAGGA 59.385 55.000 24.48 0.00 0.00 3.71
217 218 0.617413 AGACTTGGCCATGACAGAGG 59.383 55.000 24.48 0.00 0.00 3.69
218 219 2.741228 GCTAGACTTGGCCATGACAGAG 60.741 54.545 24.48 18.31 0.00 3.35
219 220 1.208052 GCTAGACTTGGCCATGACAGA 59.792 52.381 24.48 9.92 0.00 3.41
220 221 1.661341 GCTAGACTTGGCCATGACAG 58.339 55.000 24.48 13.05 0.00 3.51
221 222 3.861341 GCTAGACTTGGCCATGACA 57.139 52.632 24.48 0.00 0.00 3.58
228 229 2.877168 CTGATTCATGGCTAGACTTGGC 59.123 50.000 11.36 3.48 0.00 4.52
229 230 3.474600 CCTGATTCATGGCTAGACTTGG 58.525 50.000 11.36 0.00 0.00 3.61
230 231 2.877168 GCCTGATTCATGGCTAGACTTG 59.123 50.000 15.64 5.08 45.26 3.16
231 232 3.205784 GCCTGATTCATGGCTAGACTT 57.794 47.619 15.64 0.00 45.26 3.01
232 233 2.926778 GCCTGATTCATGGCTAGACT 57.073 50.000 15.64 0.00 45.26 3.24
239 240 1.331756 GCGTAACTGCCTGATTCATGG 59.668 52.381 0.00 0.00 0.00 3.66
240 241 1.004610 CGCGTAACTGCCTGATTCATG 60.005 52.381 0.00 0.00 0.00 3.07
241 242 1.290203 CGCGTAACTGCCTGATTCAT 58.710 50.000 0.00 0.00 0.00 2.57
242 243 1.358725 GCGCGTAACTGCCTGATTCA 61.359 55.000 8.43 0.00 0.00 2.57
243 244 1.348594 GCGCGTAACTGCCTGATTC 59.651 57.895 8.43 0.00 0.00 2.52
244 245 3.486263 GCGCGTAACTGCCTGATT 58.514 55.556 8.43 0.00 0.00 2.57
250 251 2.945615 TTGTTCGGCGCGTAACTGC 61.946 57.895 19.98 0.00 0.00 4.40
251 252 1.154727 GTTGTTCGGCGCGTAACTG 60.155 57.895 19.98 0.00 0.00 3.16
252 253 2.651137 CGTTGTTCGGCGCGTAACT 61.651 57.895 19.98 0.00 35.71 2.24
253 254 1.947934 ATCGTTGTTCGGCGCGTAAC 61.948 55.000 8.43 14.54 40.32 2.50
254 255 1.733758 ATCGTTGTTCGGCGCGTAA 60.734 52.632 8.43 0.00 40.32 3.18
255 256 2.126385 ATCGTTGTTCGGCGCGTA 60.126 55.556 8.43 0.00 40.32 4.42
256 257 3.773630 CATCGTTGTTCGGCGCGT 61.774 61.111 8.43 0.00 40.32 6.01
257 258 3.406060 CTCATCGTTGTTCGGCGCG 62.406 63.158 0.00 0.00 40.32 6.86
258 259 2.395690 CTCATCGTTGTTCGGCGC 59.604 61.111 0.00 0.00 40.32 6.53
259 260 2.014093 GAGCTCATCGTTGTTCGGCG 62.014 60.000 9.40 0.00 40.32 6.46
260 261 1.710339 GAGCTCATCGTTGTTCGGC 59.290 57.895 9.40 0.00 40.32 5.54
261 262 1.991430 CGAGCTCATCGTTGTTCGG 59.009 57.895 15.40 0.00 46.62 4.30
280 281 3.344215 GGATGGCGATGCAGAGCG 61.344 66.667 9.62 6.13 0.00 5.03
281 282 1.820906 TTGGATGGCGATGCAGAGC 60.821 57.895 2.74 7.57 30.64 4.09
282 283 0.745486 TGTTGGATGGCGATGCAGAG 60.745 55.000 2.74 0.00 30.64 3.35
283 284 1.026182 GTGTTGGATGGCGATGCAGA 61.026 55.000 2.74 0.00 30.64 4.26
284 285 1.028330 AGTGTTGGATGGCGATGCAG 61.028 55.000 2.74 0.00 30.64 4.41
285 286 1.002257 AGTGTTGGATGGCGATGCA 60.002 52.632 0.00 0.00 0.00 3.96
286 287 1.026182 TGAGTGTTGGATGGCGATGC 61.026 55.000 0.00 0.00 0.00 3.91
287 288 1.671979 ATGAGTGTTGGATGGCGATG 58.328 50.000 0.00 0.00 0.00 3.84
288 289 2.019249 CAATGAGTGTTGGATGGCGAT 58.981 47.619 0.00 0.00 0.00 4.58
289 290 1.452110 CAATGAGTGTTGGATGGCGA 58.548 50.000 0.00 0.00 0.00 5.54
290 291 0.179156 GCAATGAGTGTTGGATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
291 292 1.135199 CAGCAATGAGTGTTGGATGGC 60.135 52.381 0.00 0.00 34.95 4.40
292 293 2.933495 CAGCAATGAGTGTTGGATGG 57.067 50.000 0.00 0.00 34.95 3.51
297 298 1.267806 GGTGTCCAGCAATGAGTGTTG 59.732 52.381 0.00 0.00 38.14 3.33
298 299 1.609208 GGTGTCCAGCAATGAGTGTT 58.391 50.000 0.00 0.00 0.00 3.32
299 300 0.603707 CGGTGTCCAGCAATGAGTGT 60.604 55.000 0.00 0.00 0.00 3.55
300 301 0.320683 TCGGTGTCCAGCAATGAGTG 60.321 55.000 0.00 0.00 0.00 3.51
301 302 0.320771 GTCGGTGTCCAGCAATGAGT 60.321 55.000 0.00 0.00 0.00 3.41
302 303 0.320683 TGTCGGTGTCCAGCAATGAG 60.321 55.000 0.00 0.00 0.00 2.90
303 304 0.107643 TTGTCGGTGTCCAGCAATGA 59.892 50.000 0.00 0.00 0.00 2.57
304 305 0.518636 CTTGTCGGTGTCCAGCAATG 59.481 55.000 0.00 0.00 0.00 2.82
305 306 0.396435 TCTTGTCGGTGTCCAGCAAT 59.604 50.000 0.00 0.00 0.00 3.56
306 307 0.249868 CTCTTGTCGGTGTCCAGCAA 60.250 55.000 0.00 0.00 0.00 3.91
307 308 1.367471 CTCTTGTCGGTGTCCAGCA 59.633 57.895 0.00 0.00 0.00 4.41
308 309 1.374758 CCTCTTGTCGGTGTCCAGC 60.375 63.158 0.00 0.00 0.00 4.85
309 310 0.319900 CACCTCTTGTCGGTGTCCAG 60.320 60.000 1.16 0.00 45.36 3.86
310 311 1.745890 CACCTCTTGTCGGTGTCCA 59.254 57.895 1.16 0.00 45.36 4.02
311 312 4.675404 CACCTCTTGTCGGTGTCC 57.325 61.111 1.16 0.00 45.36 4.02
315 316 2.031163 GCTGCACCTCTTGTCGGT 59.969 61.111 0.00 0.00 34.38 4.69
316 317 1.294659 GAAGCTGCACCTCTTGTCGG 61.295 60.000 1.02 0.00 0.00 4.79
317 318 1.621301 CGAAGCTGCACCTCTTGTCG 61.621 60.000 1.02 0.00 0.00 4.35
318 319 0.601311 ACGAAGCTGCACCTCTTGTC 60.601 55.000 1.02 0.00 0.00 3.18
319 320 0.601311 GACGAAGCTGCACCTCTTGT 60.601 55.000 1.02 0.00 0.00 3.16
320 321 1.621301 CGACGAAGCTGCACCTCTTG 61.621 60.000 1.02 0.00 0.00 3.02
321 322 1.373497 CGACGAAGCTGCACCTCTT 60.373 57.895 1.02 0.00 0.00 2.85
322 323 2.259818 CGACGAAGCTGCACCTCT 59.740 61.111 1.02 0.00 0.00 3.69
323 324 3.482783 GCGACGAAGCTGCACCTC 61.483 66.667 1.02 0.00 0.00 3.85
326 327 4.122515 GACGCGACGAAGCTGCAC 62.123 66.667 15.93 0.00 34.40 4.57
329 330 3.470567 GTGGACGCGACGAAGCTG 61.471 66.667 15.93 0.00 34.40 4.24
330 331 4.719369 GGTGGACGCGACGAAGCT 62.719 66.667 15.93 0.00 34.40 3.74
331 332 4.719369 AGGTGGACGCGACGAAGC 62.719 66.667 15.93 8.62 0.00 3.86
332 333 2.504244 GAGGTGGACGCGACGAAG 60.504 66.667 15.93 0.00 0.00 3.79
333 334 3.263503 CTGAGGTGGACGCGACGAA 62.264 63.158 15.93 0.00 0.00 3.85
334 335 3.733960 CTGAGGTGGACGCGACGA 61.734 66.667 15.93 0.00 0.00 4.20
336 337 3.973267 GAGCTGAGGTGGACGCGAC 62.973 68.421 15.93 6.56 0.00 5.19
337 338 3.749064 GAGCTGAGGTGGACGCGA 61.749 66.667 15.93 0.00 0.00 5.87
338 339 4.803426 GGAGCTGAGGTGGACGCG 62.803 72.222 3.53 3.53 0.00 6.01
339 340 3.363844 GAGGAGCTGAGGTGGACGC 62.364 68.421 0.00 0.00 0.00 5.19
340 341 1.680651 AGAGGAGCTGAGGTGGACG 60.681 63.158 0.00 0.00 0.00 4.79
341 342 4.451544 AGAGGAGCTGAGGTGGAC 57.548 61.111 0.00 0.00 0.00 4.02
349 350 1.102154 ATCGTGACTCAGAGGAGCTG 58.898 55.000 1.53 0.00 45.42 4.24
350 351 1.102154 CATCGTGACTCAGAGGAGCT 58.898 55.000 1.53 0.00 45.42 4.09
351 352 0.814457 ACATCGTGACTCAGAGGAGC 59.186 55.000 1.53 0.00 45.42 4.70
352 353 4.703645 TTTACATCGTGACTCAGAGGAG 57.296 45.455 1.53 0.00 46.96 3.69
353 354 4.082190 CCTTTTACATCGTGACTCAGAGGA 60.082 45.833 1.53 0.00 0.00 3.71
354 355 4.177026 CCTTTTACATCGTGACTCAGAGG 58.823 47.826 1.53 0.00 0.00 3.69
355 356 3.614616 GCCTTTTACATCGTGACTCAGAG 59.385 47.826 0.00 0.00 0.00 3.35
356 357 3.006430 TGCCTTTTACATCGTGACTCAGA 59.994 43.478 0.00 0.00 0.00 3.27
357 358 3.325870 TGCCTTTTACATCGTGACTCAG 58.674 45.455 0.00 0.00 0.00 3.35
358 359 3.394674 TGCCTTTTACATCGTGACTCA 57.605 42.857 0.00 0.00 0.00 3.41
359 360 6.417191 TTTATGCCTTTTACATCGTGACTC 57.583 37.500 0.00 0.00 0.00 3.36
360 361 6.811253 TTTTATGCCTTTTACATCGTGACT 57.189 33.333 0.00 0.00 0.00 3.41
381 382 1.202405 CGCTTTCCACTGCCTGTTTTT 60.202 47.619 0.00 0.00 0.00 1.94
382 383 0.385390 CGCTTTCCACTGCCTGTTTT 59.615 50.000 0.00 0.00 0.00 2.43
383 384 1.455383 CCGCTTTCCACTGCCTGTTT 61.455 55.000 0.00 0.00 0.00 2.83
384 385 1.898574 CCGCTTTCCACTGCCTGTT 60.899 57.895 0.00 0.00 0.00 3.16
385 386 2.281761 CCGCTTTCCACTGCCTGT 60.282 61.111 0.00 0.00 0.00 4.00
386 387 3.058160 CCCGCTTTCCACTGCCTG 61.058 66.667 0.00 0.00 0.00 4.85
389 390 2.982744 GAAGCCCGCTTTCCACTGC 61.983 63.158 2.98 0.00 36.26 4.40
390 391 1.172180 TTGAAGCCCGCTTTCCACTG 61.172 55.000 2.98 0.00 36.26 3.66
391 392 0.890996 CTTGAAGCCCGCTTTCCACT 60.891 55.000 2.98 0.00 36.26 4.00
392 393 0.889186 TCTTGAAGCCCGCTTTCCAC 60.889 55.000 2.98 0.00 36.26 4.02
393 394 0.889186 GTCTTGAAGCCCGCTTTCCA 60.889 55.000 2.98 0.00 36.26 3.53
394 395 1.587043 GGTCTTGAAGCCCGCTTTCC 61.587 60.000 2.98 0.00 36.26 3.13
395 396 0.889186 TGGTCTTGAAGCCCGCTTTC 60.889 55.000 2.98 0.00 36.26 2.62
396 397 0.467290 TTGGTCTTGAAGCCCGCTTT 60.467 50.000 2.98 0.00 36.26 3.51
397 398 0.251341 ATTGGTCTTGAAGCCCGCTT 60.251 50.000 0.54 0.54 39.23 4.68
398 399 0.618458 TATTGGTCTTGAAGCCCGCT 59.382 50.000 3.77 0.00 0.00 5.52
399 400 1.459450 TTATTGGTCTTGAAGCCCGC 58.541 50.000 3.77 0.00 0.00 6.13
400 401 4.513198 TTTTTATTGGTCTTGAAGCCCG 57.487 40.909 3.77 0.00 0.00 6.13
401 402 6.338146 GGTATTTTTATTGGTCTTGAAGCCC 58.662 40.000 3.77 0.00 0.00 5.19
402 403 6.071051 TGGGTATTTTTATTGGTCTTGAAGCC 60.071 38.462 0.00 0.00 0.00 4.35
403 404 6.930731 TGGGTATTTTTATTGGTCTTGAAGC 58.069 36.000 0.00 0.00 0.00 3.86
404 405 8.585018 AGTTGGGTATTTTTATTGGTCTTGAAG 58.415 33.333 0.00 0.00 0.00 3.02
405 406 8.485578 AGTTGGGTATTTTTATTGGTCTTGAA 57.514 30.769 0.00 0.00 0.00 2.69
406 407 9.589461 TTAGTTGGGTATTTTTATTGGTCTTGA 57.411 29.630 0.00 0.00 0.00 3.02
407 408 9.634163 GTTAGTTGGGTATTTTTATTGGTCTTG 57.366 33.333 0.00 0.00 0.00 3.02
408 409 9.369672 TGTTAGTTGGGTATTTTTATTGGTCTT 57.630 29.630 0.00 0.00 0.00 3.01
409 410 8.799367 GTGTTAGTTGGGTATTTTTATTGGTCT 58.201 33.333 0.00 0.00 0.00 3.85
410 411 8.030692 GGTGTTAGTTGGGTATTTTTATTGGTC 58.969 37.037 0.00 0.00 0.00 4.02
411 412 7.509659 TGGTGTTAGTTGGGTATTTTTATTGGT 59.490 33.333 0.00 0.00 0.00 3.67
412 413 7.897864 TGGTGTTAGTTGGGTATTTTTATTGG 58.102 34.615 0.00 0.00 0.00 3.16
413 414 9.765795 TTTGGTGTTAGTTGGGTATTTTTATTG 57.234 29.630 0.00 0.00 0.00 1.90
417 418 9.990360 CTATTTTGGTGTTAGTTGGGTATTTTT 57.010 29.630 0.00 0.00 0.00 1.94
418 419 8.590204 CCTATTTTGGTGTTAGTTGGGTATTTT 58.410 33.333 0.00 0.00 0.00 1.82
419 420 7.179516 CCCTATTTTGGTGTTAGTTGGGTATTT 59.820 37.037 0.00 0.00 0.00 1.40
420 421 6.666113 CCCTATTTTGGTGTTAGTTGGGTATT 59.334 38.462 0.00 0.00 0.00 1.89
421 422 6.192044 CCCTATTTTGGTGTTAGTTGGGTAT 58.808 40.000 0.00 0.00 0.00 2.73
422 423 5.516945 CCCCTATTTTGGTGTTAGTTGGGTA 60.517 44.000 0.00 0.00 0.00 3.69
423 424 4.412843 CCCTATTTTGGTGTTAGTTGGGT 58.587 43.478 0.00 0.00 0.00 4.51
424 425 3.767131 CCCCTATTTTGGTGTTAGTTGGG 59.233 47.826 0.00 0.00 0.00 4.12
425 426 3.194755 GCCCCTATTTTGGTGTTAGTTGG 59.805 47.826 0.00 0.00 0.00 3.77
426 427 3.829601 TGCCCCTATTTTGGTGTTAGTTG 59.170 43.478 0.00 0.00 0.00 3.16
427 428 4.120946 TGCCCCTATTTTGGTGTTAGTT 57.879 40.909 0.00 0.00 0.00 2.24
428 429 3.818295 TGCCCCTATTTTGGTGTTAGT 57.182 42.857 0.00 0.00 0.00 2.24
429 430 5.186797 TCATTTGCCCCTATTTTGGTGTTAG 59.813 40.000 0.00 0.00 0.00 2.34
430 431 5.087323 TCATTTGCCCCTATTTTGGTGTTA 58.913 37.500 0.00 0.00 0.00 2.41
431 432 3.906846 TCATTTGCCCCTATTTTGGTGTT 59.093 39.130 0.00 0.00 0.00 3.32
432 433 3.515562 TCATTTGCCCCTATTTTGGTGT 58.484 40.909 0.00 0.00 0.00 4.16
433 434 4.550076 TTCATTTGCCCCTATTTTGGTG 57.450 40.909 0.00 0.00 0.00 4.17
434 435 5.574970 TTTTCATTTGCCCCTATTTTGGT 57.425 34.783 0.00 0.00 0.00 3.67
435 436 7.176340 TGAATTTTTCATTTGCCCCTATTTTGG 59.824 33.333 0.00 0.00 34.08 3.28
436 437 8.108551 TGAATTTTTCATTTGCCCCTATTTTG 57.891 30.769 0.00 0.00 34.08 2.44
437 438 7.094248 GCTGAATTTTTCATTTGCCCCTATTTT 60.094 33.333 0.00 0.00 39.30 1.82
438 439 6.375174 GCTGAATTTTTCATTTGCCCCTATTT 59.625 34.615 0.00 0.00 39.30 1.40
439 440 5.882000 GCTGAATTTTTCATTTGCCCCTATT 59.118 36.000 0.00 0.00 39.30 1.73
440 441 5.430886 GCTGAATTTTTCATTTGCCCCTAT 58.569 37.500 0.00 0.00 39.30 2.57
441 442 4.620332 CGCTGAATTTTTCATTTGCCCCTA 60.620 41.667 0.00 0.00 39.30 3.53
442 443 3.678289 GCTGAATTTTTCATTTGCCCCT 58.322 40.909 0.00 0.00 39.30 4.79
443 444 2.416202 CGCTGAATTTTTCATTTGCCCC 59.584 45.455 0.00 0.00 39.30 5.80
444 445 2.159667 GCGCTGAATTTTTCATTTGCCC 60.160 45.455 0.00 0.00 39.30 5.36
445 446 2.479656 TGCGCTGAATTTTTCATTTGCC 59.520 40.909 9.73 0.00 39.30 4.52
446 447 3.791993 TGCGCTGAATTTTTCATTTGC 57.208 38.095 9.73 0.00 39.30 3.68
447 448 6.687958 ACTTTTTGCGCTGAATTTTTCATTTG 59.312 30.769 9.73 0.00 39.30 2.32
448 449 6.784176 ACTTTTTGCGCTGAATTTTTCATTT 58.216 28.000 9.73 0.00 39.30 2.32
449 450 6.362210 ACTTTTTGCGCTGAATTTTTCATT 57.638 29.167 9.73 0.00 39.30 2.57
450 451 5.989551 ACTTTTTGCGCTGAATTTTTCAT 57.010 30.435 9.73 0.00 39.30 2.57
451 452 5.793026 AACTTTTTGCGCTGAATTTTTCA 57.207 30.435 9.73 0.00 38.17 2.69
452 453 7.563270 TCATAACTTTTTGCGCTGAATTTTTC 58.437 30.769 9.73 0.00 0.00 2.29
453 454 7.475771 TCATAACTTTTTGCGCTGAATTTTT 57.524 28.000 9.73 0.00 0.00 1.94
454 455 7.475771 TTCATAACTTTTTGCGCTGAATTTT 57.524 28.000 9.73 0.00 0.00 1.82
455 456 7.010923 TGTTTCATAACTTTTTGCGCTGAATTT 59.989 29.630 9.73 4.08 35.24 1.82
456 457 6.478344 TGTTTCATAACTTTTTGCGCTGAATT 59.522 30.769 9.73 0.00 35.24 2.17
457 458 5.982516 TGTTTCATAACTTTTTGCGCTGAAT 59.017 32.000 9.73 0.00 35.24 2.57
458 459 5.344066 TGTTTCATAACTTTTTGCGCTGAA 58.656 33.333 9.73 3.67 35.24 3.02
459 460 4.926244 TGTTTCATAACTTTTTGCGCTGA 58.074 34.783 9.73 0.00 35.24 4.26
460 461 5.005203 TGTTGTTTCATAACTTTTTGCGCTG 59.995 36.000 9.73 0.00 35.24 5.18
461 462 5.005299 GTGTTGTTTCATAACTTTTTGCGCT 59.995 36.000 9.73 0.00 35.24 5.92
462 463 5.187480 GTGTTGTTTCATAACTTTTTGCGC 58.813 37.500 0.00 0.00 35.24 6.09
463 464 6.324522 TGTGTTGTTTCATAACTTTTTGCG 57.675 33.333 0.00 0.00 35.24 4.85
464 465 7.904094 TCATGTGTTGTTTCATAACTTTTTGC 58.096 30.769 0.00 0.00 35.24 3.68
490 491 9.305925 GTGAAGATTTGTGATGTCTTTCTTTTT 57.694 29.630 0.00 0.00 32.67 1.94
491 492 8.469200 TGTGAAGATTTGTGATGTCTTTCTTTT 58.531 29.630 0.00 0.00 32.67 2.27
492 493 7.999679 TGTGAAGATTTGTGATGTCTTTCTTT 58.000 30.769 0.00 0.00 32.67 2.52
493 494 7.572523 TGTGAAGATTTGTGATGTCTTTCTT 57.427 32.000 0.00 0.00 32.67 2.52
494 495 7.572523 TTGTGAAGATTTGTGATGTCTTTCT 57.427 32.000 0.00 0.00 32.67 2.52
495 496 8.633075 TTTTGTGAAGATTTGTGATGTCTTTC 57.367 30.769 0.00 0.00 32.67 2.62
523 524 9.543783 GGGTAAGTCGATTTTCTGACTATAAAT 57.456 33.333 0.00 0.00 44.36 1.40
524 525 8.533657 TGGGTAAGTCGATTTTCTGACTATAAA 58.466 33.333 0.00 0.00 44.36 1.40
525 526 8.070034 TGGGTAAGTCGATTTTCTGACTATAA 57.930 34.615 0.00 0.00 44.36 0.98
526 527 7.649533 TGGGTAAGTCGATTTTCTGACTATA 57.350 36.000 0.00 0.00 44.36 1.31
527 528 6.540438 TGGGTAAGTCGATTTTCTGACTAT 57.460 37.500 0.00 0.00 44.36 2.12
528 529 5.988310 TGGGTAAGTCGATTTTCTGACTA 57.012 39.130 0.00 0.00 44.36 2.59
529 530 4.884668 TGGGTAAGTCGATTTTCTGACT 57.115 40.909 0.00 0.00 46.98 3.41
530 531 5.934935 TTTGGGTAAGTCGATTTTCTGAC 57.065 39.130 0.00 0.00 35.33 3.51
531 532 7.519032 AAATTTGGGTAAGTCGATTTTCTGA 57.481 32.000 0.00 0.00 0.00 3.27
532 533 9.685828 TTAAAATTTGGGTAAGTCGATTTTCTG 57.314 29.630 0.00 0.00 31.48 3.02
537 538 9.819267 TGTTTTTAAAATTTGGGTAAGTCGATT 57.181 25.926 0.55 0.00 0.00 3.34
538 539 9.471084 CTGTTTTTAAAATTTGGGTAAGTCGAT 57.529 29.630 0.55 0.00 0.00 3.59
539 540 8.684520 TCTGTTTTTAAAATTTGGGTAAGTCGA 58.315 29.630 0.55 0.00 0.00 4.20
540 541 8.748582 GTCTGTTTTTAAAATTTGGGTAAGTCG 58.251 33.333 0.55 0.00 0.00 4.18
541 542 8.748582 CGTCTGTTTTTAAAATTTGGGTAAGTC 58.251 33.333 0.55 0.00 0.00 3.01
542 543 8.468399 TCGTCTGTTTTTAAAATTTGGGTAAGT 58.532 29.630 0.55 0.00 0.00 2.24
543 544 8.748582 GTCGTCTGTTTTTAAAATTTGGGTAAG 58.251 33.333 0.55 0.00 0.00 2.34
544 545 8.468399 AGTCGTCTGTTTTTAAAATTTGGGTAA 58.532 29.630 0.55 0.00 0.00 2.85
545 546 7.998580 AGTCGTCTGTTTTTAAAATTTGGGTA 58.001 30.769 0.55 0.00 0.00 3.69
546 547 6.869695 AGTCGTCTGTTTTTAAAATTTGGGT 58.130 32.000 0.55 0.00 0.00 4.51
547 548 7.764695 AAGTCGTCTGTTTTTAAAATTTGGG 57.235 32.000 0.55 0.00 0.00 4.12
548 549 9.291664 TGTAAGTCGTCTGTTTTTAAAATTTGG 57.708 29.630 0.55 0.00 0.00 3.28
554 555 9.919348 GTTGTATGTAAGTCGTCTGTTTTTAAA 57.081 29.630 0.00 0.00 0.00 1.52
555 556 9.096160 TGTTGTATGTAAGTCGTCTGTTTTTAA 57.904 29.630 0.00 0.00 0.00 1.52
556 557 8.645730 TGTTGTATGTAAGTCGTCTGTTTTTA 57.354 30.769 0.00 0.00 0.00 1.52
557 558 7.542534 TGTTGTATGTAAGTCGTCTGTTTTT 57.457 32.000 0.00 0.00 0.00 1.94
558 559 6.292703 GCTGTTGTATGTAAGTCGTCTGTTTT 60.293 38.462 0.00 0.00 0.00 2.43
559 560 5.176958 GCTGTTGTATGTAAGTCGTCTGTTT 59.823 40.000 0.00 0.00 0.00 2.83
560 561 4.684703 GCTGTTGTATGTAAGTCGTCTGTT 59.315 41.667 0.00 0.00 0.00 3.16
561 562 4.022242 AGCTGTTGTATGTAAGTCGTCTGT 60.022 41.667 0.00 0.00 0.00 3.41
562 563 4.486090 AGCTGTTGTATGTAAGTCGTCTG 58.514 43.478 0.00 0.00 0.00 3.51
563 564 4.785511 AGCTGTTGTATGTAAGTCGTCT 57.214 40.909 0.00 0.00 0.00 4.18
564 565 6.585322 ACTTTAGCTGTTGTATGTAAGTCGTC 59.415 38.462 0.00 0.00 0.00 4.20
565 566 6.365247 CACTTTAGCTGTTGTATGTAAGTCGT 59.635 38.462 0.00 0.00 0.00 4.34
566 567 6.365247 ACACTTTAGCTGTTGTATGTAAGTCG 59.635 38.462 0.00 0.00 0.00 4.18
567 568 7.653767 ACACTTTAGCTGTTGTATGTAAGTC 57.346 36.000 0.00 0.00 0.00 3.01
568 569 9.720769 AATACACTTTAGCTGTTGTATGTAAGT 57.279 29.630 0.00 0.00 0.00 2.24
633 634 1.819288 TCGACCACCACTTTTTGCAAA 59.181 42.857 8.05 8.05 0.00 3.68
634 635 1.464734 TCGACCACCACTTTTTGCAA 58.535 45.000 0.00 0.00 0.00 4.08
635 636 1.686355 ATCGACCACCACTTTTTGCA 58.314 45.000 0.00 0.00 0.00 4.08
643 644 3.581024 TGTAACTGTATCGACCACCAC 57.419 47.619 0.00 0.00 0.00 4.16
706 708 3.010200 TGGGCAAGCCAAAAACATTTT 57.990 38.095 13.87 0.00 37.98 1.82
962 968 3.202706 GAATTCCCGAGGCGTGGC 61.203 66.667 0.00 0.00 0.00 5.01
973 979 2.616634 GAAGTCGGGGTAGGAATTCC 57.383 55.000 17.31 17.31 33.65 3.01
997 1003 2.356278 GACCTGCAGGGCCATCAA 59.644 61.111 35.42 0.00 37.19 2.57
998 1004 4.100084 CGACCTGCAGGGCCATCA 62.100 66.667 35.42 1.30 41.34 3.07
1219 1226 1.443194 CGAACGTACCGTCCCACTG 60.443 63.158 0.00 0.00 39.99 3.66
1287 1294 1.589716 GCAGGTGCAGGTGGATCAAC 61.590 60.000 0.00 0.00 41.59 3.18
1368 1375 7.122204 ACAACCAGCGTGCTGAGTATATATATA 59.878 37.037 22.79 0.00 46.30 0.86
1369 1376 6.071334 ACAACCAGCGTGCTGAGTATATATAT 60.071 38.462 22.79 0.00 46.30 0.86
1370 1377 5.243060 ACAACCAGCGTGCTGAGTATATATA 59.757 40.000 22.79 0.00 46.30 0.86
1371 1378 4.039245 ACAACCAGCGTGCTGAGTATATAT 59.961 41.667 22.79 1.90 46.30 0.86
1415 1422 0.317770 AAACGCCAACGACAATGCAG 60.318 50.000 0.00 0.00 43.93 4.41
1424 1431 4.390351 GTTTCATCCAAGAAACGCCAACG 61.390 47.826 4.11 0.00 45.28 4.10
1446 1453 0.104120 CATGGCAAGCATGACCATGG 59.896 55.000 25.06 11.19 46.36 3.66
1447 1454 3.659850 CATGGCAAGCATGACCATG 57.340 52.632 22.05 22.05 45.71 3.66
1560 1567 0.447801 GCTGGTTAGCGTTCATGGTG 59.552 55.000 0.00 0.00 40.67 4.17
1571 1578 5.405269 GGTATTTTTGCAGTTTGCTGGTTAG 59.595 40.000 2.48 0.00 45.31 2.34
1629 1636 0.792640 AGAGCAATGCGAAGTGAACG 59.207 50.000 0.00 0.00 0.00 3.95
1635 1642 3.549299 AAACTCAAGAGCAATGCGAAG 57.451 42.857 0.00 0.00 0.00 3.79
1757 1765 1.559831 CACTATCAACGCTCGCATCA 58.440 50.000 0.00 0.00 0.00 3.07
1900 1908 7.445402 CCCGATACCTAAATGTCATCAAAATCT 59.555 37.037 0.00 0.00 0.00 2.40
2108 2116 1.005215 CCAAACCTCCATGGAAGAGCT 59.995 52.381 17.55 0.00 39.12 4.09
2282 2290 1.564348 TCCCTGGCCTGAAAAGGATAC 59.436 52.381 11.88 0.00 32.43 2.24
2419 2492 2.356135 CCGTCAAGGTAACCTGGATTG 58.644 52.381 0.00 0.00 35.81 2.67
2800 2873 4.201763 GCTAAGTGCTCAGCATAGTGAAAC 60.202 45.833 0.54 0.00 41.91 2.78
2801 2874 3.935203 GCTAAGTGCTCAGCATAGTGAAA 59.065 43.478 0.54 0.00 41.91 2.69
2969 4623 6.758416 GTCAAAGCACCTGAAAAGAAAAGAAT 59.242 34.615 0.00 0.00 0.00 2.40
3082 4736 2.457366 TGAAAGGGAGAGTTCGAAGC 57.543 50.000 0.00 0.00 0.00 3.86
3309 4963 3.192212 TGCATATTGCCATTGTTTCGTCA 59.808 39.130 0.00 0.00 44.23 4.35
3546 5201 2.818274 GAGGGTAACTTGGCCGCG 60.818 66.667 0.00 0.00 0.00 6.46
3590 5245 8.275015 ACGACAACTCCTATATCTATGATCAG 57.725 38.462 0.09 0.00 0.00 2.90
3596 5251 8.158132 TCTCAGAACGACAACTCCTATATCTAT 58.842 37.037 0.00 0.00 0.00 1.98
3613 5268 4.310769 ACTCCACATCTTTTCTCAGAACG 58.689 43.478 0.00 0.00 0.00 3.95
3620 5275 8.519799 TCTTTTTACAACTCCACATCTTTTCT 57.480 30.769 0.00 0.00 0.00 2.52
3718 5373 4.757657 ACAACCCAAAAGAACAAAACAACC 59.242 37.500 0.00 0.00 0.00 3.77
3737 5392 3.577649 TCATCCGTCAGAGAAGACAAC 57.422 47.619 0.00 0.00 38.43 3.32
3742 5397 4.569966 CCAGAATTTCATCCGTCAGAGAAG 59.430 45.833 0.00 0.00 0.00 2.85
3774 5429 2.232208 CTCAGGATTTTTGTCTTGGGCC 59.768 50.000 0.00 0.00 0.00 5.80
3778 5433 3.250762 TGCGTCTCAGGATTTTTGTCTTG 59.749 43.478 0.00 0.00 0.00 3.02
3800 5455 0.588252 GTCTTGCACGCATGTCTGTT 59.412 50.000 5.00 0.00 0.00 3.16
3835 5490 9.891828 ACCAAGAAATTCAAAAAGAACAAAAAC 57.108 25.926 0.00 0.00 39.49 2.43
3839 5494 7.659390 ACACACCAAGAAATTCAAAAAGAACAA 59.341 29.630 0.00 0.00 39.49 2.83
3840 5495 7.117523 CACACACCAAGAAATTCAAAAAGAACA 59.882 33.333 0.00 0.00 39.49 3.18
3841 5496 7.330700 TCACACACCAAGAAATTCAAAAAGAAC 59.669 33.333 0.00 0.00 39.49 3.01
3845 5500 7.326454 TGATCACACACCAAGAAATTCAAAAA 58.674 30.769 0.00 0.00 0.00 1.94
3846 5501 6.871844 TGATCACACACCAAGAAATTCAAAA 58.128 32.000 0.00 0.00 0.00 2.44
3847 5502 6.462552 TGATCACACACCAAGAAATTCAAA 57.537 33.333 0.00 0.00 0.00 2.69
3848 5503 6.096705 AGTTGATCACACACCAAGAAATTCAA 59.903 34.615 0.00 0.00 0.00 2.69
3849 5504 5.593909 AGTTGATCACACACCAAGAAATTCA 59.406 36.000 0.00 0.00 0.00 2.57
3850 5505 6.076981 AGTTGATCACACACCAAGAAATTC 57.923 37.500 0.00 0.00 0.00 2.17
3851 5506 5.010012 GGAGTTGATCACACACCAAGAAATT 59.990 40.000 14.77 0.00 0.00 1.82
3852 5507 4.520492 GGAGTTGATCACACACCAAGAAAT 59.480 41.667 14.77 0.00 0.00 2.17
3870 5525 2.806244 GTGAAACATGCACGTAGGAGTT 59.194 45.455 0.00 0.00 36.32 3.01
3897 5554 0.258194 AGATACTCCGGTCCCTCGTT 59.742 55.000 0.00 0.00 0.00 3.85
4005 5662 9.391006 TCTTGTAATGTTTATTATCAGGTGGTC 57.609 33.333 0.00 0.00 31.81 4.02
4006 5663 9.920946 ATCTTGTAATGTTTATTATCAGGTGGT 57.079 29.630 0.00 0.00 31.81 4.16
4031 5804 5.222379 GGATGAGGTAAGACCCTACTCCTAT 60.222 48.000 0.00 0.00 39.75 2.57
4057 5830 3.854669 AGATTCGAGCCCTGCCGG 61.855 66.667 0.00 0.00 0.00 6.13
4058 5831 2.587194 CAGATTCGAGCCCTGCCG 60.587 66.667 0.00 0.00 0.00 5.69
4084 5863 7.441157 CCAATATTCAGTACATTATGTGTCCGT 59.559 37.037 8.26 0.00 42.29 4.69
4086 5865 8.902540 TCCAATATTCAGTACATTATGTGTCC 57.097 34.615 8.26 0.00 42.29 4.02
4153 5995 0.179113 GTTTGGTGTGCCACTGGTTG 60.179 55.000 0.00 0.00 46.01 3.77
4168 6010 0.240945 ATTTGCTCCGCCGAAGTTTG 59.759 50.000 0.00 0.00 0.00 2.93
4222 6064 5.964477 TGAGTATTGGTATCACCTCTTTCCT 59.036 40.000 0.00 0.00 39.58 3.36
4223 6065 6.049790 GTGAGTATTGGTATCACCTCTTTCC 58.950 44.000 0.00 0.00 39.58 3.13
4372 6214 5.888724 TGTCCTTTTTGTTTCTCCATGTGTA 59.111 36.000 0.00 0.00 0.00 2.90
4388 6230 9.082313 ACTATTCACATCTGAATTTGTCCTTTT 57.918 29.630 1.29 0.00 43.48 2.27
4392 6234 7.119699 TGACACTATTCACATCTGAATTTGTCC 59.880 37.037 21.97 12.64 45.51 4.02
4407 6249 8.196771 AGACAAAAGCAAAAATGACACTATTCA 58.803 29.630 0.00 0.00 0.00 2.57
4430 6272 6.072508 TGCCATGAATAGTGTCAAAAGAAGAC 60.073 38.462 0.00 0.00 36.55 3.01
4474 6316 6.344572 TCAAAATCCGAAATACACATCGAG 57.655 37.500 0.00 0.00 41.43 4.04
4476 6318 6.847792 CAGATCAAAATCCGAAATACACATCG 59.152 38.462 0.00 0.00 38.74 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.