Multiple sequence alignment - TraesCS2D01G252900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G252900 chr2D 100.000 3791 0 0 1 3791 304969428 304973218 0.000000e+00 7001.0
1 TraesCS2D01G252900 chr2D 83.206 131 20 2 3485 3614 404100950 404100821 6.650000e-23 119.0
2 TraesCS2D01G252900 chr2B 95.334 2422 105 4 947 3361 373487326 373489746 0.000000e+00 3840.0
3 TraesCS2D01G252900 chr2B 88.276 725 78 6 1 722 373483809 373484529 0.000000e+00 861.0
4 TraesCS2D01G252900 chr2A 95.817 2343 86 7 1024 3361 383603444 383605779 0.000000e+00 3773.0
5 TraesCS2D01G252900 chr2A 82.186 247 36 4 3362 3602 157925503 157925747 4.960000e-49 206.0
6 TraesCS2D01G252900 chr2A 92.453 53 4 0 3651 3703 383605796 383605848 4.060000e-10 76.8
7 TraesCS2D01G252900 chr4D 83.858 254 28 9 3362 3605 319243635 319243385 2.950000e-56 230.0
8 TraesCS2D01G252900 chr4A 83.665 251 28 9 3362 3602 154525345 154525592 1.370000e-54 224.0
9 TraesCS2D01G252900 chr6A 78.788 132 18 10 3412 3535 1110000 1109871 3.140000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G252900 chr2D 304969428 304973218 3790 False 7001.0 7001 100.000 1 3791 1 chr2D.!!$F1 3790
1 TraesCS2D01G252900 chr2B 373483809 373489746 5937 False 2350.5 3840 91.805 1 3361 2 chr2B.!!$F1 3360
2 TraesCS2D01G252900 chr2A 383603444 383605848 2404 False 1924.9 3773 94.135 1024 3703 2 chr2A.!!$F2 2679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 705 0.250252 TGCTGGATTGAGCACGACAA 60.250 50.0 0.00 0.0 44.16 3.18 F
722 724 0.462047 ACCGCCTAGGATCGCAAAAG 60.462 55.0 14.75 0.0 45.00 2.27 F
1955 4544 0.031111 TTCGGTCTGATGGAGGGGAT 60.031 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 4416 0.593128 CCTCAAACACCTTCCTTGCG 59.407 55.0 0.0 0.0 0.00 4.85 R
2661 5250 0.767375 AATGGCAGTCTCCACACACT 59.233 50.0 0.0 0.0 39.25 3.55 R
3565 6158 0.035439 GGAGAGGGTGGCATTTCGAA 60.035 55.0 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.062524 CATCTAGATTAATATAGACGAGAGGGG 57.937 40.741 19.41 2.30 33.89 4.79
61 62 3.157949 GAGGGGAGAGAAGGGGCG 61.158 72.222 0.00 0.00 0.00 6.13
65 66 4.168291 GGAGAGAAGGGGCGCAGG 62.168 72.222 10.83 0.00 0.00 4.85
104 106 1.480498 GGGATTGGTGTGTCCTTTGGT 60.480 52.381 0.00 0.00 37.07 3.67
108 110 1.034838 TGGTGTGTCCTTTGGTGTGC 61.035 55.000 0.00 0.00 37.07 4.57
130 132 4.528596 GCGCCCCCACTATATATAGATGAT 59.471 45.833 23.70 1.19 34.50 2.45
133 135 6.071672 CGCCCCCACTATATATAGATGATCAG 60.072 46.154 23.70 8.88 34.50 2.90
136 138 6.728164 CCCCACTATATATAGATGATCAGGGG 59.272 46.154 23.70 22.23 34.50 4.79
156 158 3.787001 CCGACTTGGAGGAGGGGC 61.787 72.222 0.00 0.00 42.00 5.80
209 211 2.655953 TCCTCCTAGGACTACCCCC 58.344 63.158 7.62 0.00 40.06 5.40
215 217 2.022848 TAGGACTACCCCCTCCCCC 61.023 68.421 0.00 0.00 35.30 5.40
260 262 2.692368 ACGATGGAGGGGGCACAT 60.692 61.111 0.00 0.00 0.00 3.21
261 263 2.111878 CGATGGAGGGGGCACATC 59.888 66.667 0.00 0.00 38.06 3.06
267 269 1.071471 GAGGGGGCACATCGTATGG 59.929 63.158 0.00 0.00 33.60 2.74
272 274 2.510906 GCACATCGTATGGCCCCT 59.489 61.111 0.00 0.00 33.60 4.79
287 289 1.823250 GCCCCTAATTAGGCCCATGTG 60.823 57.143 24.05 9.82 43.76 3.21
307 309 1.302832 CTGCTGTCCCTTGGGACAC 60.303 63.158 31.27 26.30 42.96 3.67
331 333 0.927767 AGGATCGACCCACTAGACCT 59.072 55.000 0.00 0.00 40.05 3.85
333 335 1.682323 GGATCGACCCACTAGACCTTC 59.318 57.143 0.00 0.00 0.00 3.46
334 336 1.334243 GATCGACCCACTAGACCTTCG 59.666 57.143 0.00 0.00 0.00 3.79
335 337 0.679002 TCGACCCACTAGACCTTCGG 60.679 60.000 0.00 0.00 0.00 4.30
336 338 1.664321 CGACCCACTAGACCTTCGGG 61.664 65.000 0.00 0.00 43.02 5.14
343 345 3.512724 CCACTAGACCTTCGGGAACTTTA 59.487 47.826 0.00 0.00 38.77 1.85
367 369 5.300286 ACAGAACATTTCAGAAACTCCCAAG 59.700 40.000 0.00 0.00 0.00 3.61
371 373 1.149101 TTCAGAAACTCCCAAGGCCT 58.851 50.000 0.00 0.00 0.00 5.19
389 391 2.166459 GCCTCTTGGTATTTTTCAGGGC 59.834 50.000 0.00 0.00 35.27 5.19
396 398 5.815233 TGGTATTTTTCAGGGCATTTTCA 57.185 34.783 0.00 0.00 0.00 2.69
397 399 5.792741 TGGTATTTTTCAGGGCATTTTCAG 58.207 37.500 0.00 0.00 0.00 3.02
418 420 1.189524 ACCTTCCCGACATGACCGAA 61.190 55.000 0.00 0.00 0.00 4.30
430 432 3.447025 GACCGAATGCGCTAGGGCT 62.447 63.158 29.27 12.98 36.09 5.19
448 450 1.956629 CTTCTACGTCGCCACCCCAT 61.957 60.000 0.00 0.00 0.00 4.00
453 455 2.124695 GTCGCCACCCCATCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
467 469 4.446167 CCCATCTTCCATTACTATGTGGCA 60.446 45.833 0.00 0.00 35.43 4.92
472 474 2.509548 TCCATTACTATGTGGCAGGCTT 59.490 45.455 0.00 0.00 35.43 4.35
478 480 1.549243 TATGTGGCAGGCTTGGACGA 61.549 55.000 0.00 0.00 0.00 4.20
484 486 1.503542 CAGGCTTGGACGACATTGC 59.496 57.895 0.00 0.00 0.00 3.56
503 505 1.358877 CGTTGATTGCTCATCGACCA 58.641 50.000 9.89 0.00 43.89 4.02
524 526 1.177401 GAACACAAAGATGGCTCCCC 58.823 55.000 0.00 0.00 0.00 4.81
546 548 1.548973 GAGGCCACGACGATTATGCG 61.549 60.000 5.01 0.00 37.29 4.73
557 559 1.148310 GATTATGCGTGACATCCCGG 58.852 55.000 0.00 0.00 40.38 5.73
588 590 1.949631 GTAGCCGTGCTATGTCGCC 60.950 63.158 8.54 0.00 43.30 5.54
594 596 4.201679 TGCTATGTCGCCCGACCG 62.202 66.667 17.06 7.68 43.97 4.79
615 617 3.521560 GCGCCTATTATCCATCGATGAA 58.478 45.455 26.86 6.95 0.00 2.57
641 643 3.059884 CAACATGACACACTAGCGTTCT 58.940 45.455 0.00 0.00 0.00 3.01
650 652 2.751259 ACACTAGCGTTCTCATCCGTTA 59.249 45.455 0.00 0.00 0.00 3.18
651 653 3.181499 ACACTAGCGTTCTCATCCGTTAG 60.181 47.826 0.00 0.00 41.67 2.34
669 671 2.341543 CGGCATGCGATAGAGCCT 59.658 61.111 12.44 0.00 44.47 4.58
675 677 2.673610 GCATGCGATAGAGCCTAAGGAG 60.674 54.545 0.00 0.00 39.76 3.69
678 680 1.542472 GCGATAGAGCCTAAGGAGACC 59.458 57.143 0.00 0.00 39.76 3.85
681 683 3.497048 CGATAGAGCCTAAGGAGACCTGA 60.497 52.174 0.00 0.00 32.50 3.86
692 694 1.280421 GGAGACCTGAGTTGCTGGATT 59.720 52.381 0.00 0.00 38.83 3.01
693 695 2.354259 GAGACCTGAGTTGCTGGATTG 58.646 52.381 0.00 0.00 38.83 2.67
696 698 1.093159 CCTGAGTTGCTGGATTGAGC 58.907 55.000 0.00 0.00 37.79 4.26
703 705 0.250252 TGCTGGATTGAGCACGACAA 60.250 50.000 0.00 0.00 44.16 3.18
705 707 0.798776 CTGGATTGAGCACGACAACC 59.201 55.000 0.00 0.00 0.00 3.77
707 709 1.132640 GATTGAGCACGACAACCGC 59.867 57.895 0.00 0.00 43.32 5.68
709 711 2.731691 ATTGAGCACGACAACCGCCT 62.732 55.000 0.00 0.00 43.32 5.52
718 720 2.292794 GACAACCGCCTAGGATCGCA 62.293 60.000 14.75 0.00 45.00 5.10
722 724 0.462047 ACCGCCTAGGATCGCAAAAG 60.462 55.000 14.75 0.00 45.00 2.27
723 725 0.462047 CCGCCTAGGATCGCAAAAGT 60.462 55.000 14.75 0.00 45.00 2.66
724 726 0.931005 CGCCTAGGATCGCAAAAGTC 59.069 55.000 14.75 0.00 0.00 3.01
727 729 3.728845 GCCTAGGATCGCAAAAGTCATA 58.271 45.455 14.75 0.00 0.00 2.15
730 930 2.565841 AGGATCGCAAAAGTCATAGCC 58.434 47.619 0.00 0.00 0.00 3.93
742 942 7.172361 GCAAAAGTCATAGCCAAATTTTAACCA 59.828 33.333 0.00 0.00 0.00 3.67
743 943 9.218440 CAAAAGTCATAGCCAAATTTTAACCAT 57.782 29.630 0.00 0.00 0.00 3.55
746 946 9.474313 AAGTCATAGCCAAATTTTAACCATAGA 57.526 29.630 0.00 0.00 0.00 1.98
747 947 9.646522 AGTCATAGCCAAATTTTAACCATAGAT 57.353 29.630 0.00 0.00 0.00 1.98
902 1199 6.698380 TGACTCAAGATACAAAGGGACTAAC 58.302 40.000 0.00 0.00 38.49 2.34
910 1207 4.245251 ACAAAGGGACTAACAAACCAGT 57.755 40.909 0.00 0.00 38.49 4.00
912 1209 5.128205 ACAAAGGGACTAACAAACCAGTAC 58.872 41.667 0.00 0.00 38.49 2.73
918 1974 4.023450 GGACTAACAAACCAGTACAAAGGC 60.023 45.833 0.00 0.00 0.00 4.35
922 1978 2.687935 ACAAACCAGTACAAAGGCAGTG 59.312 45.455 0.00 0.00 0.00 3.66
927 1983 5.086104 ACCAGTACAAAGGCAGTGTATAG 57.914 43.478 0.00 1.19 34.15 1.31
928 1984 3.871594 CCAGTACAAAGGCAGTGTATAGC 59.128 47.826 0.00 0.00 34.15 2.97
945 2001 3.171911 CATTTTCGTTGCGCCGCC 61.172 61.111 6.63 0.00 0.00 6.13
959 3545 1.228737 CCGCCTTCCCTCCCAAAAA 60.229 57.895 0.00 0.00 0.00 1.94
973 3559 1.000394 CCAAAAACCATCACGAACCCC 60.000 52.381 0.00 0.00 0.00 4.95
974 3560 1.960689 CAAAAACCATCACGAACCCCT 59.039 47.619 0.00 0.00 0.00 4.79
979 3565 1.324740 CCATCACGAACCCCTACCGA 61.325 60.000 0.00 0.00 0.00 4.69
1004 3590 2.904131 CCATGCCATTGCCATGCA 59.096 55.556 2.12 0.00 36.47 3.96
1078 3667 3.965026 CTCCTCCGCCTCCACCTGA 62.965 68.421 0.00 0.00 0.00 3.86
1171 3760 2.659016 CTCTCCTCGCCAAGCACA 59.341 61.111 0.00 0.00 0.00 4.57
1182 3771 1.887956 GCCAAGCACATCCTCTTCCAA 60.888 52.381 0.00 0.00 0.00 3.53
1185 3774 2.746362 CAAGCACATCCTCTTCCAACTC 59.254 50.000 0.00 0.00 0.00 3.01
1197 3786 2.125512 CAACTCGCTTCCCTCCGG 60.126 66.667 0.00 0.00 0.00 5.14
1228 3817 3.506096 CGCTCCTCTACGCCGTCA 61.506 66.667 0.00 0.00 0.00 4.35
1446 4035 1.227380 CGCTGAGGCCGCTAAGAAT 60.227 57.895 8.34 0.00 34.44 2.40
1452 4041 4.242602 GCCGCTAAGAATGGCCTT 57.757 55.556 3.32 0.00 43.06 4.35
1488 4077 0.888619 TCAAGAACTCGCTCGTCCAT 59.111 50.000 0.00 0.00 0.00 3.41
1644 4233 1.337823 ACAATCTTCCGGGAGACGTTG 60.338 52.381 16.81 18.97 42.24 4.10
1827 4416 4.373116 TGCGGCGGAGTTGAGGAC 62.373 66.667 9.78 0.00 0.00 3.85
1954 4543 0.976073 GTTCGGTCTGATGGAGGGGA 60.976 60.000 0.00 0.00 0.00 4.81
1955 4544 0.031111 TTCGGTCTGATGGAGGGGAT 60.031 55.000 0.00 0.00 0.00 3.85
1993 4582 6.615617 ACTGATATCACTATGGTAGGAGTGT 58.384 40.000 0.00 0.00 43.01 3.55
2025 4614 4.082523 CACTGCGGGTGGGTCGAT 62.083 66.667 0.00 0.00 41.90 3.59
2153 4742 5.912892 TGAGGAAGCACACGATTATATCAA 58.087 37.500 0.00 0.00 0.00 2.57
2175 4764 2.036256 ATGCCACTGGAGCCCAAC 59.964 61.111 0.00 0.00 30.80 3.77
2420 5009 0.389948 GAGATCCGCAACTCCGTGTT 60.390 55.000 0.00 0.00 39.92 3.32
2661 5250 7.286546 CCTATCAGGATAGTGAAGAACTTGAGA 59.713 40.741 13.66 0.00 37.74 3.27
2760 5349 2.608623 AGGTTCCACCATTTCAAAGGG 58.391 47.619 0.00 0.00 41.95 3.95
2811 5400 7.765819 TGGTAGTTGATTCATGTATTGACTGAG 59.234 37.037 10.01 0.00 32.84 3.35
2816 5405 6.343703 TGATTCATGTATTGACTGAGAGTGG 58.656 40.000 0.00 0.00 32.84 4.00
2825 5414 2.104622 TGACTGAGAGTGGTGAATGCAA 59.895 45.455 0.00 0.00 0.00 4.08
2826 5415 3.244665 TGACTGAGAGTGGTGAATGCAAT 60.245 43.478 0.00 0.00 0.00 3.56
2866 5456 2.683211 ATAATCAGGGGAATGGTGGC 57.317 50.000 0.00 0.00 0.00 5.01
3127 5720 8.025445 GCTAGCACCATTCTATTGGAAATATTG 58.975 37.037 10.63 0.00 39.25 1.90
3131 5724 7.649306 GCACCATTCTATTGGAAATATTGTGAC 59.351 37.037 0.00 0.00 39.25 3.67
3150 5743 3.498397 TGACGAAAATTTCTGAGTCCTGC 59.502 43.478 4.09 0.00 0.00 4.85
3154 5747 3.930634 AAATTTCTGAGTCCTGCTTGC 57.069 42.857 0.00 0.00 0.00 4.01
3174 5767 3.312421 TGCACAACAAGTTCTGTAGAAGC 59.688 43.478 0.00 0.00 37.23 3.86
3224 5817 5.183713 CAGCCACAGTATCCAATTTCTGAAA 59.816 40.000 5.15 5.15 0.00 2.69
3228 5821 6.094603 CCACAGTATCCAATTTCTGAAAGGAG 59.905 42.308 14.19 5.88 0.00 3.69
3234 5827 4.141274 TCCAATTTCTGAAAGGAGGTGTGA 60.141 41.667 8.95 0.61 0.00 3.58
3235 5828 4.217118 CCAATTTCTGAAAGGAGGTGTGAG 59.783 45.833 8.95 0.00 0.00 3.51
3298 5891 4.223923 ACAAAATGTGGAAGTGGGAAACAA 59.776 37.500 0.00 0.00 0.00 2.83
3365 5958 8.350852 ACTGCTAGTATATACTACAATGGACC 57.649 38.462 17.03 0.00 37.73 4.46
3366 5959 7.396623 ACTGCTAGTATATACTACAATGGACCC 59.603 40.741 17.03 0.00 37.73 4.46
3367 5960 6.666546 TGCTAGTATATACTACAATGGACCCC 59.333 42.308 17.03 0.00 37.73 4.95
3368 5961 6.183360 GCTAGTATATACTACAATGGACCCCG 60.183 46.154 17.03 5.94 37.73 5.73
3369 5962 5.648247 AGTATATACTACAATGGACCCCGT 58.352 41.667 13.88 0.00 34.13 5.28
3370 5963 6.080009 AGTATATACTACAATGGACCCCGTT 58.920 40.000 13.88 0.00 34.13 4.44
3371 5964 7.240897 AGTATATACTACAATGGACCCCGTTA 58.759 38.462 13.88 0.00 34.13 3.18
3372 5965 4.950205 ATACTACAATGGACCCCGTTAG 57.050 45.455 0.00 0.00 30.71 2.34
3373 5966 1.208776 ACTACAATGGACCCCGTTAGC 59.791 52.381 0.00 0.00 30.71 3.09
3374 5967 1.485066 CTACAATGGACCCCGTTAGCT 59.515 52.381 0.00 0.00 30.71 3.32
3375 5968 0.035439 ACAATGGACCCCGTTAGCTG 60.035 55.000 0.00 0.00 30.71 4.24
3376 5969 0.748005 CAATGGACCCCGTTAGCTGG 60.748 60.000 0.00 0.00 30.71 4.85
3377 5970 2.552231 AATGGACCCCGTTAGCTGGC 62.552 60.000 0.00 0.00 29.98 4.85
3378 5971 4.832608 GGACCCCGTTAGCTGGCG 62.833 72.222 0.00 0.00 0.00 5.69
3379 5972 3.766691 GACCCCGTTAGCTGGCGA 61.767 66.667 12.34 0.00 0.00 5.54
3380 5973 3.305177 GACCCCGTTAGCTGGCGAA 62.305 63.158 12.34 0.00 0.00 4.70
3381 5974 2.818274 CCCCGTTAGCTGGCGAAC 60.818 66.667 12.34 8.18 0.00 3.95
3384 5977 3.545911 CGTTAGCTGGCGAACGTT 58.454 55.556 24.70 0.00 45.28 3.99
3385 5978 1.414897 CGTTAGCTGGCGAACGTTC 59.585 57.895 24.70 18.47 45.28 3.95
3394 5987 2.809601 CGAACGTTCGCCAGGAGG 60.810 66.667 34.54 9.32 44.26 4.30
3395 5988 2.434359 GAACGTTCGCCAGGAGGG 60.434 66.667 13.36 0.00 40.85 4.30
3412 6005 3.370231 GGGGGCATTTGCGAACGT 61.370 61.111 0.00 0.00 43.26 3.99
3413 6006 2.648454 GGGGCATTTGCGAACGTT 59.352 55.556 0.00 0.00 43.26 3.99
3414 6007 1.006688 GGGGCATTTGCGAACGTTT 60.007 52.632 0.46 0.00 43.26 3.60
3415 6008 1.006825 GGGGCATTTGCGAACGTTTC 61.007 55.000 0.46 0.00 43.26 2.78
3426 6019 2.681152 GAACGTTTCGATGGCAGTTT 57.319 45.000 0.46 0.00 0.00 2.66
3427 6020 2.994849 GAACGTTTCGATGGCAGTTTT 58.005 42.857 0.46 0.00 0.00 2.43
3428 6021 4.136517 GAACGTTTCGATGGCAGTTTTA 57.863 40.909 0.46 0.00 0.00 1.52
3429 6022 3.806316 ACGTTTCGATGGCAGTTTTAG 57.194 42.857 0.00 0.00 0.00 1.85
3430 6023 3.135994 ACGTTTCGATGGCAGTTTTAGT 58.864 40.909 0.00 0.00 0.00 2.24
3431 6024 3.562557 ACGTTTCGATGGCAGTTTTAGTT 59.437 39.130 0.00 0.00 0.00 2.24
3432 6025 3.906008 CGTTTCGATGGCAGTTTTAGTTG 59.094 43.478 0.00 0.00 0.00 3.16
3433 6026 4.553938 CGTTTCGATGGCAGTTTTAGTTGT 60.554 41.667 0.00 0.00 0.00 3.32
3434 6027 4.481930 TTCGATGGCAGTTTTAGTTGTG 57.518 40.909 0.00 0.00 0.00 3.33
3435 6028 3.472652 TCGATGGCAGTTTTAGTTGTGT 58.527 40.909 0.00 0.00 0.00 3.72
3436 6029 3.249799 TCGATGGCAGTTTTAGTTGTGTG 59.750 43.478 0.00 0.00 0.00 3.82
3437 6030 3.003275 CGATGGCAGTTTTAGTTGTGTGT 59.997 43.478 0.00 0.00 0.00 3.72
3438 6031 3.773860 TGGCAGTTTTAGTTGTGTGTG 57.226 42.857 0.00 0.00 0.00 3.82
3439 6032 2.425312 TGGCAGTTTTAGTTGTGTGTGG 59.575 45.455 0.00 0.00 0.00 4.17
3440 6033 2.223711 GGCAGTTTTAGTTGTGTGTGGG 60.224 50.000 0.00 0.00 0.00 4.61
3441 6034 2.223711 GCAGTTTTAGTTGTGTGTGGGG 60.224 50.000 0.00 0.00 0.00 4.96
3442 6035 3.020984 CAGTTTTAGTTGTGTGTGGGGT 58.979 45.455 0.00 0.00 0.00 4.95
3443 6036 3.020984 AGTTTTAGTTGTGTGTGGGGTG 58.979 45.455 0.00 0.00 0.00 4.61
3444 6037 2.060050 TTTAGTTGTGTGTGGGGTGG 57.940 50.000 0.00 0.00 0.00 4.61
3445 6038 0.466555 TTAGTTGTGTGTGGGGTGGC 60.467 55.000 0.00 0.00 0.00 5.01
3446 6039 1.636769 TAGTTGTGTGTGGGGTGGCA 61.637 55.000 0.00 0.00 0.00 4.92
3447 6040 2.123939 TTGTGTGTGGGGTGGCAG 60.124 61.111 0.00 0.00 0.00 4.85
3448 6041 2.990083 TTGTGTGTGGGGTGGCAGT 61.990 57.895 0.00 0.00 0.00 4.40
3449 6042 2.123897 GTGTGTGGGGTGGCAGTT 60.124 61.111 0.00 0.00 0.00 3.16
3450 6043 1.756561 GTGTGTGGGGTGGCAGTTT 60.757 57.895 0.00 0.00 0.00 2.66
3451 6044 1.454847 TGTGTGGGGTGGCAGTTTC 60.455 57.895 0.00 0.00 0.00 2.78
3452 6045 1.152756 GTGTGGGGTGGCAGTTTCT 60.153 57.895 0.00 0.00 0.00 2.52
3453 6046 0.755327 GTGTGGGGTGGCAGTTTCTT 60.755 55.000 0.00 0.00 0.00 2.52
3454 6047 0.467290 TGTGGGGTGGCAGTTTCTTC 60.467 55.000 0.00 0.00 0.00 2.87
3455 6048 0.467290 GTGGGGTGGCAGTTTCTTCA 60.467 55.000 0.00 0.00 0.00 3.02
3456 6049 0.178992 TGGGGTGGCAGTTTCTTCAG 60.179 55.000 0.00 0.00 0.00 3.02
3457 6050 1.527433 GGGGTGGCAGTTTCTTCAGC 61.527 60.000 0.00 0.00 0.00 4.26
3458 6051 0.823356 GGGTGGCAGTTTCTTCAGCA 60.823 55.000 0.00 0.00 0.00 4.41
3459 6052 1.251251 GGTGGCAGTTTCTTCAGCAT 58.749 50.000 0.00 0.00 0.00 3.79
3460 6053 1.068055 GGTGGCAGTTTCTTCAGCATG 60.068 52.381 0.00 0.00 37.54 4.06
3461 6054 1.068055 GTGGCAGTTTCTTCAGCATGG 60.068 52.381 0.00 0.00 36.16 3.66
3462 6055 0.108945 GGCAGTTTCTTCAGCATGGC 60.109 55.000 0.00 0.00 36.16 4.40
3463 6056 0.599558 GCAGTTTCTTCAGCATGGCA 59.400 50.000 0.00 0.00 36.16 4.92
3464 6057 1.203994 GCAGTTTCTTCAGCATGGCAT 59.796 47.619 0.00 0.00 36.16 4.40
3465 6058 2.353406 GCAGTTTCTTCAGCATGGCATT 60.353 45.455 0.00 0.00 36.16 3.56
3466 6059 3.863400 GCAGTTTCTTCAGCATGGCATTT 60.863 43.478 0.00 0.00 36.16 2.32
3467 6060 4.312443 CAGTTTCTTCAGCATGGCATTTT 58.688 39.130 0.00 0.00 36.16 1.82
3468 6061 4.753107 CAGTTTCTTCAGCATGGCATTTTT 59.247 37.500 0.00 0.00 36.16 1.94
3487 6080 4.335400 TTTTGGGATGAAGGCTCAAAAC 57.665 40.909 5.68 0.00 34.49 2.43
3488 6081 2.978156 TGGGATGAAGGCTCAAAACT 57.022 45.000 0.00 0.00 34.49 2.66
3489 6082 2.517959 TGGGATGAAGGCTCAAAACTG 58.482 47.619 0.00 0.00 34.49 3.16
3490 6083 1.203287 GGGATGAAGGCTCAAAACTGC 59.797 52.381 0.00 0.00 34.49 4.40
3498 6091 0.813821 GCTCAAAACTGCCATCCTCC 59.186 55.000 0.00 0.00 0.00 4.30
3499 6092 1.467920 CTCAAAACTGCCATCCTCCC 58.532 55.000 0.00 0.00 0.00 4.30
3500 6093 0.776810 TCAAAACTGCCATCCTCCCA 59.223 50.000 0.00 0.00 0.00 4.37
3501 6094 1.180029 CAAAACTGCCATCCTCCCAG 58.820 55.000 0.00 0.00 0.00 4.45
3502 6095 1.075601 AAAACTGCCATCCTCCCAGA 58.924 50.000 0.00 0.00 0.00 3.86
3503 6096 1.075601 AAACTGCCATCCTCCCAGAA 58.924 50.000 0.00 0.00 0.00 3.02
3504 6097 1.075601 AACTGCCATCCTCCCAGAAA 58.924 50.000 0.00 0.00 0.00 2.52
3505 6098 1.075601 ACTGCCATCCTCCCAGAAAA 58.924 50.000 0.00 0.00 0.00 2.29
3506 6099 1.272147 ACTGCCATCCTCCCAGAAAAC 60.272 52.381 0.00 0.00 0.00 2.43
3507 6100 0.322456 TGCCATCCTCCCAGAAAACG 60.322 55.000 0.00 0.00 0.00 3.60
3508 6101 1.657751 GCCATCCTCCCAGAAAACGC 61.658 60.000 0.00 0.00 0.00 4.84
3509 6102 1.032114 CCATCCTCCCAGAAAACGCC 61.032 60.000 0.00 0.00 0.00 5.68
3510 6103 0.322456 CATCCTCCCAGAAAACGCCA 60.322 55.000 0.00 0.00 0.00 5.69
3511 6104 0.625849 ATCCTCCCAGAAAACGCCAT 59.374 50.000 0.00 0.00 0.00 4.40
3512 6105 0.322456 TCCTCCCAGAAAACGCCATG 60.322 55.000 0.00 0.00 0.00 3.66
3513 6106 1.508088 CTCCCAGAAAACGCCATGC 59.492 57.895 0.00 0.00 0.00 4.06
3514 6107 0.962356 CTCCCAGAAAACGCCATGCT 60.962 55.000 0.00 0.00 0.00 3.79
3515 6108 1.213537 CCCAGAAAACGCCATGCTG 59.786 57.895 0.00 0.00 0.00 4.41
3516 6109 1.526575 CCCAGAAAACGCCATGCTGT 61.527 55.000 0.00 0.00 0.00 4.40
3517 6110 0.314935 CCAGAAAACGCCATGCTGTT 59.685 50.000 0.00 0.00 0.00 3.16
3518 6111 1.269726 CCAGAAAACGCCATGCTGTTT 60.270 47.619 7.48 7.48 37.07 2.83
3519 6112 2.472816 CAGAAAACGCCATGCTGTTTT 58.527 42.857 19.82 19.82 42.58 2.43
3520 6113 2.219216 CAGAAAACGCCATGCTGTTTTG 59.781 45.455 22.90 12.01 41.29 2.44
3521 6114 2.100584 AGAAAACGCCATGCTGTTTTGA 59.899 40.909 22.90 0.00 41.29 2.69
3522 6115 2.593346 AAACGCCATGCTGTTTTGAA 57.407 40.000 7.48 0.00 34.01 2.69
3523 6116 2.138596 AACGCCATGCTGTTTTGAAG 57.861 45.000 0.00 0.00 0.00 3.02
3524 6117 1.317613 ACGCCATGCTGTTTTGAAGA 58.682 45.000 0.00 0.00 0.00 2.87
3525 6118 1.680735 ACGCCATGCTGTTTTGAAGAA 59.319 42.857 0.00 0.00 0.00 2.52
3526 6119 2.100584 ACGCCATGCTGTTTTGAAGAAA 59.899 40.909 0.00 0.00 0.00 2.52
3527 6120 2.472488 CGCCATGCTGTTTTGAAGAAAC 59.528 45.455 0.00 0.00 0.00 2.78
3528 6121 3.721035 GCCATGCTGTTTTGAAGAAACT 58.279 40.909 3.66 0.00 0.00 2.66
3529 6122 3.492011 GCCATGCTGTTTTGAAGAAACTG 59.508 43.478 3.66 4.23 33.84 3.16
3535 6128 4.301628 CTGTTTTGAAGAAACTGCATCCC 58.698 43.478 0.00 0.00 0.00 3.85
3536 6129 3.960102 TGTTTTGAAGAAACTGCATCCCT 59.040 39.130 0.00 0.00 0.00 4.20
3537 6130 4.202141 TGTTTTGAAGAAACTGCATCCCTG 60.202 41.667 0.00 0.00 0.00 4.45
3538 6131 3.507162 TTGAAGAAACTGCATCCCTGA 57.493 42.857 0.00 0.00 0.00 3.86
3539 6132 2.783135 TGAAGAAACTGCATCCCTGAC 58.217 47.619 0.00 0.00 0.00 3.51
3540 6133 2.106338 TGAAGAAACTGCATCCCTGACA 59.894 45.455 0.00 0.00 0.00 3.58
3541 6134 2.191128 AGAAACTGCATCCCTGACAC 57.809 50.000 0.00 0.00 0.00 3.67
3542 6135 1.421268 AGAAACTGCATCCCTGACACA 59.579 47.619 0.00 0.00 0.00 3.72
3543 6136 2.158623 AGAAACTGCATCCCTGACACAA 60.159 45.455 0.00 0.00 0.00 3.33
3544 6137 2.592102 AACTGCATCCCTGACACAAT 57.408 45.000 0.00 0.00 0.00 2.71
3545 6138 2.592102 ACTGCATCCCTGACACAATT 57.408 45.000 0.00 0.00 0.00 2.32
3546 6139 3.719268 ACTGCATCCCTGACACAATTA 57.281 42.857 0.00 0.00 0.00 1.40
3547 6140 4.032960 ACTGCATCCCTGACACAATTAA 57.967 40.909 0.00 0.00 0.00 1.40
3548 6141 4.406456 ACTGCATCCCTGACACAATTAAA 58.594 39.130 0.00 0.00 0.00 1.52
3549 6142 4.832266 ACTGCATCCCTGACACAATTAAAA 59.168 37.500 0.00 0.00 0.00 1.52
3550 6143 5.132897 TGCATCCCTGACACAATTAAAAC 57.867 39.130 0.00 0.00 0.00 2.43
3551 6144 4.832266 TGCATCCCTGACACAATTAAAACT 59.168 37.500 0.00 0.00 0.00 2.66
3552 6145 5.163513 GCATCCCTGACACAATTAAAACTG 58.836 41.667 0.00 0.00 0.00 3.16
3553 6146 4.846779 TCCCTGACACAATTAAAACTGC 57.153 40.909 0.00 0.00 0.00 4.40
3554 6147 3.572255 TCCCTGACACAATTAAAACTGCC 59.428 43.478 0.00 0.00 0.00 4.85
3555 6148 3.320541 CCCTGACACAATTAAAACTGCCA 59.679 43.478 0.00 0.00 0.00 4.92
3556 6149 4.549458 CCTGACACAATTAAAACTGCCAG 58.451 43.478 0.00 0.00 0.00 4.85
3557 6150 4.278170 CCTGACACAATTAAAACTGCCAGA 59.722 41.667 0.00 0.00 0.00 3.86
3558 6151 5.221224 CCTGACACAATTAAAACTGCCAGAA 60.221 40.000 0.00 0.00 0.00 3.02
3559 6152 6.214191 TGACACAATTAAAACTGCCAGAAA 57.786 33.333 0.00 0.00 0.00 2.52
3560 6153 6.634805 TGACACAATTAAAACTGCCAGAAAA 58.365 32.000 0.00 0.00 0.00 2.29
3561 6154 7.099764 TGACACAATTAAAACTGCCAGAAAAA 58.900 30.769 0.00 0.00 0.00 1.94
3579 6172 2.741759 AAACATTCGAAATGCCACCC 57.258 45.000 0.00 0.00 0.00 4.61
3580 6173 1.923356 AACATTCGAAATGCCACCCT 58.077 45.000 0.00 0.00 0.00 4.34
3581 6174 1.463674 ACATTCGAAATGCCACCCTC 58.536 50.000 0.00 0.00 0.00 4.30
3582 6175 1.004745 ACATTCGAAATGCCACCCTCT 59.995 47.619 0.00 0.00 0.00 3.69
3583 6176 1.672881 CATTCGAAATGCCACCCTCTC 59.327 52.381 0.00 0.00 0.00 3.20
3584 6177 0.035439 TTCGAAATGCCACCCTCTCC 60.035 55.000 0.00 0.00 0.00 3.71
3585 6178 1.452108 CGAAATGCCACCCTCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
3586 6179 1.691219 GAAATGCCACCCTCTCCCA 59.309 57.895 0.00 0.00 0.00 4.37
3587 6180 0.394899 GAAATGCCACCCTCTCCCAG 60.395 60.000 0.00 0.00 0.00 4.45
3588 6181 2.505364 AAATGCCACCCTCTCCCAGC 62.505 60.000 0.00 0.00 0.00 4.85
3589 6182 4.980592 TGCCACCCTCTCCCAGCA 62.981 66.667 0.00 0.00 0.00 4.41
3590 6183 3.650950 GCCACCCTCTCCCAGCAA 61.651 66.667 0.00 0.00 0.00 3.91
3591 6184 3.170362 CCACCCTCTCCCAGCAAA 58.830 61.111 0.00 0.00 0.00 3.68
3592 6185 1.303643 CCACCCTCTCCCAGCAAAC 60.304 63.158 0.00 0.00 0.00 2.93
3593 6186 1.672356 CACCCTCTCCCAGCAAACG 60.672 63.158 0.00 0.00 0.00 3.60
3594 6187 2.147387 ACCCTCTCCCAGCAAACGT 61.147 57.895 0.00 0.00 0.00 3.99
3595 6188 1.376037 CCCTCTCCCAGCAAACGTC 60.376 63.158 0.00 0.00 0.00 4.34
3596 6189 1.371183 CCTCTCCCAGCAAACGTCA 59.629 57.895 0.00 0.00 0.00 4.35
3597 6190 0.671781 CCTCTCCCAGCAAACGTCAG 60.672 60.000 0.00 0.00 0.00 3.51
3598 6191 1.294659 CTCTCCCAGCAAACGTCAGC 61.295 60.000 4.17 4.17 0.00 4.26
3599 6192 2.281484 TCCCAGCAAACGTCAGCC 60.281 61.111 8.38 0.00 0.00 4.85
3600 6193 2.594303 CCCAGCAAACGTCAGCCA 60.594 61.111 8.38 0.00 0.00 4.75
3601 6194 2.620112 CCCAGCAAACGTCAGCCAG 61.620 63.158 8.38 2.71 0.00 4.85
3602 6195 1.597854 CCAGCAAACGTCAGCCAGA 60.598 57.895 8.38 0.00 0.00 3.86
3603 6196 0.957395 CCAGCAAACGTCAGCCAGAT 60.957 55.000 8.38 0.00 0.00 2.90
3604 6197 1.675714 CCAGCAAACGTCAGCCAGATA 60.676 52.381 8.38 0.00 0.00 1.98
3605 6198 2.076100 CAGCAAACGTCAGCCAGATAA 58.924 47.619 8.38 0.00 0.00 1.75
3606 6199 2.094894 CAGCAAACGTCAGCCAGATAAG 59.905 50.000 8.38 0.00 0.00 1.73
3607 6200 2.028112 AGCAAACGTCAGCCAGATAAGA 60.028 45.455 8.38 0.00 0.00 2.10
3608 6201 2.939103 GCAAACGTCAGCCAGATAAGAT 59.061 45.455 0.00 0.00 0.00 2.40
3609 6202 4.119862 GCAAACGTCAGCCAGATAAGATA 58.880 43.478 0.00 0.00 0.00 1.98
3610 6203 4.752101 GCAAACGTCAGCCAGATAAGATAT 59.248 41.667 0.00 0.00 0.00 1.63
3611 6204 5.107298 GCAAACGTCAGCCAGATAAGATATC 60.107 44.000 0.00 0.00 0.00 1.63
3612 6205 4.792521 ACGTCAGCCAGATAAGATATCC 57.207 45.455 0.00 0.00 0.00 2.59
3613 6206 3.191581 ACGTCAGCCAGATAAGATATCCG 59.808 47.826 0.00 0.00 0.00 4.18
3614 6207 3.191581 CGTCAGCCAGATAAGATATCCGT 59.808 47.826 0.00 0.00 0.00 4.69
3615 6208 4.395231 CGTCAGCCAGATAAGATATCCGTA 59.605 45.833 0.00 0.00 0.00 4.02
3616 6209 5.642686 GTCAGCCAGATAAGATATCCGTAC 58.357 45.833 0.00 0.00 0.00 3.67
3617 6210 5.416326 GTCAGCCAGATAAGATATCCGTACT 59.584 44.000 0.00 0.00 0.00 2.73
3618 6211 6.598457 GTCAGCCAGATAAGATATCCGTACTA 59.402 42.308 0.00 0.00 0.00 1.82
3619 6212 6.598457 TCAGCCAGATAAGATATCCGTACTAC 59.402 42.308 0.00 0.00 0.00 2.73
3620 6213 6.374613 CAGCCAGATAAGATATCCGTACTACA 59.625 42.308 0.00 0.00 0.00 2.74
3621 6214 6.946583 AGCCAGATAAGATATCCGTACTACAA 59.053 38.462 0.00 0.00 0.00 2.41
3622 6215 7.616150 AGCCAGATAAGATATCCGTACTACAAT 59.384 37.037 0.00 0.00 0.00 2.71
3633 6226 3.739300 CCGTACTACAATTCTAATGCCGG 59.261 47.826 0.00 0.00 0.00 6.13
3638 6231 2.919228 ACAATTCTAATGCCGGACCTC 58.081 47.619 5.05 0.00 0.00 3.85
3639 6232 2.505819 ACAATTCTAATGCCGGACCTCT 59.494 45.455 5.05 0.00 0.00 3.69
3640 6233 3.054361 ACAATTCTAATGCCGGACCTCTT 60.054 43.478 5.05 0.00 0.00 2.85
3641 6234 2.691409 TTCTAATGCCGGACCTCTTG 57.309 50.000 5.05 0.00 0.00 3.02
3642 6235 0.178068 TCTAATGCCGGACCTCTTGC 59.822 55.000 5.05 0.00 0.00 4.01
3643 6236 0.815615 CTAATGCCGGACCTCTTGCC 60.816 60.000 5.05 0.00 0.00 4.52
3644 6237 2.265467 TAATGCCGGACCTCTTGCCC 62.265 60.000 5.05 0.00 0.00 5.36
3646 6239 3.081409 GCCGGACCTCTTGCCCTA 61.081 66.667 5.05 0.00 0.00 3.53
3647 6240 2.444256 GCCGGACCTCTTGCCCTAT 61.444 63.158 5.05 0.00 0.00 2.57
3648 6241 1.749033 CCGGACCTCTTGCCCTATC 59.251 63.158 0.00 0.00 0.00 2.08
3649 6242 0.760945 CCGGACCTCTTGCCCTATCT 60.761 60.000 0.00 0.00 0.00 1.98
3655 6248 5.309638 GGACCTCTTGCCCTATCTTATTTC 58.690 45.833 0.00 0.00 0.00 2.17
3660 6253 7.056635 CCTCTTGCCCTATCTTATTTCAGAAA 58.943 38.462 0.00 0.00 0.00 2.52
3665 6258 6.835488 TGCCCTATCTTATTTCAGAAATTGCT 59.165 34.615 13.71 2.74 32.38 3.91
3666 6259 7.998383 TGCCCTATCTTATTTCAGAAATTGCTA 59.002 33.333 13.71 3.64 32.38 3.49
3703 6296 4.156556 TGCATTGTCAAAGAATCTACCAGC 59.843 41.667 0.00 0.00 0.00 4.85
3704 6297 4.397417 GCATTGTCAAAGAATCTACCAGCT 59.603 41.667 0.00 0.00 0.00 4.24
3705 6298 5.105997 GCATTGTCAAAGAATCTACCAGCTT 60.106 40.000 0.00 0.00 0.00 3.74
3706 6299 6.549952 CATTGTCAAAGAATCTACCAGCTTC 58.450 40.000 0.00 0.00 0.00 3.86
3707 6300 4.579869 TGTCAAAGAATCTACCAGCTTCC 58.420 43.478 0.00 0.00 0.00 3.46
3708 6301 4.041567 TGTCAAAGAATCTACCAGCTTCCA 59.958 41.667 0.00 0.00 0.00 3.53
3709 6302 4.633565 GTCAAAGAATCTACCAGCTTCCAG 59.366 45.833 0.00 0.00 0.00 3.86
3710 6303 2.998316 AGAATCTACCAGCTTCCAGC 57.002 50.000 0.00 0.00 42.84 4.85
3721 6314 2.046283 GCTTCCAGCGGTGTTTTAAC 57.954 50.000 14.40 0.00 0.00 2.01
3722 6315 1.607148 GCTTCCAGCGGTGTTTTAACT 59.393 47.619 14.40 0.00 0.00 2.24
3723 6316 2.604614 GCTTCCAGCGGTGTTTTAACTG 60.605 50.000 14.40 0.00 0.00 3.16
3728 6321 1.766069 GCGGTGTTTTAACTGCTTGG 58.234 50.000 0.94 0.00 46.85 3.61
3729 6322 1.766069 CGGTGTTTTAACTGCTTGGC 58.234 50.000 0.00 0.00 0.00 4.52
3730 6323 1.336755 CGGTGTTTTAACTGCTTGGCT 59.663 47.619 0.00 0.00 0.00 4.75
3731 6324 2.742774 GGTGTTTTAACTGCTTGGCTG 58.257 47.619 0.00 0.00 0.00 4.85
3732 6325 2.127251 GTGTTTTAACTGCTTGGCTGC 58.873 47.619 0.00 0.00 0.00 5.25
3733 6326 1.068434 TGTTTTAACTGCTTGGCTGCC 59.932 47.619 12.87 12.87 0.00 4.85
3734 6327 0.678950 TTTTAACTGCTTGGCTGCCC 59.321 50.000 17.53 0.72 0.00 5.36
3735 6328 0.178964 TTTAACTGCTTGGCTGCCCT 60.179 50.000 17.53 0.00 0.00 5.19
3736 6329 0.895100 TTAACTGCTTGGCTGCCCTG 60.895 55.000 17.53 9.91 0.00 4.45
3739 6332 4.608774 TGCTTGGCTGCCCTGCTT 62.609 61.111 25.60 0.00 34.18 3.91
3740 6333 3.308705 GCTTGGCTGCCCTGCTTT 61.309 61.111 17.53 0.00 0.00 3.51
3741 6334 1.978617 GCTTGGCTGCCCTGCTTTA 60.979 57.895 17.53 0.00 0.00 1.85
3742 6335 1.325476 GCTTGGCTGCCCTGCTTTAT 61.325 55.000 17.53 0.00 0.00 1.40
3743 6336 0.743097 CTTGGCTGCCCTGCTTTATC 59.257 55.000 17.53 0.00 0.00 1.75
3744 6337 1.031571 TTGGCTGCCCTGCTTTATCG 61.032 55.000 17.53 0.00 0.00 2.92
3745 6338 1.153168 GGCTGCCCTGCTTTATCGA 60.153 57.895 7.66 0.00 0.00 3.59
3746 6339 0.536006 GGCTGCCCTGCTTTATCGAT 60.536 55.000 7.66 2.16 0.00 3.59
3747 6340 0.590195 GCTGCCCTGCTTTATCGATG 59.410 55.000 8.54 0.00 0.00 3.84
3748 6341 1.959042 CTGCCCTGCTTTATCGATGT 58.041 50.000 8.54 0.00 0.00 3.06
3749 6342 2.806745 GCTGCCCTGCTTTATCGATGTA 60.807 50.000 8.54 0.00 0.00 2.29
3750 6343 3.668447 CTGCCCTGCTTTATCGATGTAT 58.332 45.455 8.54 0.00 0.00 2.29
3751 6344 4.067896 CTGCCCTGCTTTATCGATGTATT 58.932 43.478 8.54 0.00 0.00 1.89
3752 6345 4.065088 TGCCCTGCTTTATCGATGTATTC 58.935 43.478 8.54 0.00 0.00 1.75
3753 6346 4.202357 TGCCCTGCTTTATCGATGTATTCT 60.202 41.667 8.54 0.00 0.00 2.40
3754 6347 5.011635 TGCCCTGCTTTATCGATGTATTCTA 59.988 40.000 8.54 0.00 0.00 2.10
3755 6348 5.578727 GCCCTGCTTTATCGATGTATTCTAG 59.421 44.000 8.54 0.00 0.00 2.43
3756 6349 6.572509 GCCCTGCTTTATCGATGTATTCTAGA 60.573 42.308 8.54 0.00 0.00 2.43
3757 6350 7.032580 CCCTGCTTTATCGATGTATTCTAGAG 58.967 42.308 8.54 0.00 0.00 2.43
3758 6351 7.094162 CCCTGCTTTATCGATGTATTCTAGAGA 60.094 40.741 8.54 0.00 0.00 3.10
3759 6352 8.300286 CCTGCTTTATCGATGTATTCTAGAGAA 58.700 37.037 8.54 0.00 38.56 2.87
3760 6353 9.684448 CTGCTTTATCGATGTATTCTAGAGAAA 57.316 33.333 8.54 0.00 37.61 2.52
3786 6379 7.908193 AAATACAAGCAAGAAAAGTACAACG 57.092 32.000 0.00 0.00 0.00 4.10
3787 6380 6.854496 ATACAAGCAAGAAAAGTACAACGA 57.146 33.333 0.00 0.00 0.00 3.85
3788 6381 4.905269 ACAAGCAAGAAAAGTACAACGAC 58.095 39.130 0.00 0.00 0.00 4.34
3789 6382 4.393680 ACAAGCAAGAAAAGTACAACGACA 59.606 37.500 0.00 0.00 0.00 4.35
3790 6383 4.531659 AGCAAGAAAAGTACAACGACAC 57.468 40.909 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.976776 TCGTCTATATTAATCTAGATGGAGGTT 57.023 33.333 21.19 0.00 33.61 3.50
19 20 9.839817 TCTCGTCTATATTAATCTAGATGGAGG 57.160 37.037 23.62 16.83 33.61 4.30
49 50 4.847444 GCCTGCGCCCCTTCTCTC 62.847 72.222 4.18 0.00 0.00 3.20
61 62 2.603135 GATCACGCCATGTTGCCTGC 62.603 60.000 0.00 0.00 0.00 4.85
65 66 0.179156 CTTGGATCACGCCATGTTGC 60.179 55.000 0.00 0.00 37.86 4.17
68 69 1.077501 CCCTTGGATCACGCCATGT 60.078 57.895 0.00 0.00 37.86 3.21
71 72 0.394216 CAATCCCTTGGATCACGCCA 60.394 55.000 0.00 0.00 42.27 5.69
104 106 1.651737 ATATATAGTGGGGGCGCACA 58.348 50.000 13.89 0.00 0.00 4.57
108 110 5.775195 TGATCATCTATATATAGTGGGGGCG 59.225 44.000 17.44 2.87 0.00 6.13
130 132 3.636231 CCAAGTCGGTGCCCCTGA 61.636 66.667 0.00 0.00 0.00 3.86
133 135 4.410400 CCTCCAAGTCGGTGCCCC 62.410 72.222 0.00 0.00 35.57 5.80
136 138 2.266055 CCTCCTCCAAGTCGGTGC 59.734 66.667 0.00 0.00 35.57 5.01
215 217 1.956477 AGGCAAGCAAGTGTGTAAAGG 59.044 47.619 0.00 0.00 0.00 3.11
226 228 4.553687 TGGGGGCAAGGCAAGCAA 62.554 61.111 3.65 0.00 0.00 3.91
244 246 2.111878 GATGTGCCCCCTCCATCG 59.888 66.667 0.00 0.00 0.00 3.84
256 258 2.859165 ATTAGGGGCCATACGATGTG 57.141 50.000 4.39 0.00 0.00 3.21
257 259 3.263425 CCTAATTAGGGGCCATACGATGT 59.737 47.826 22.09 0.00 39.86 3.06
260 262 1.626825 GCCTAATTAGGGGCCATACGA 59.373 52.381 28.81 0.00 43.82 3.43
261 263 2.109425 GCCTAATTAGGGGCCATACG 57.891 55.000 28.81 4.71 43.82 3.06
267 269 0.482887 ACATGGGCCTAATTAGGGGC 59.517 55.000 28.81 21.22 46.89 5.80
287 289 3.650950 TCCCAAGGGACAGCAGCC 61.651 66.667 3.04 0.00 39.76 4.85
307 309 1.139058 CTAGTGGGTCGATCCTTTGGG 59.861 57.143 17.40 0.00 36.25 4.12
312 314 0.927767 AGGTCTAGTGGGTCGATCCT 59.072 55.000 17.40 0.00 36.25 3.24
331 333 5.823570 TGAAATGTTCTGTAAAGTTCCCGAA 59.176 36.000 0.00 0.00 0.00 4.30
333 335 5.468746 TCTGAAATGTTCTGTAAAGTTCCCG 59.531 40.000 0.00 0.00 0.00 5.14
334 336 6.877611 TCTGAAATGTTCTGTAAAGTTCCC 57.122 37.500 0.00 0.00 0.00 3.97
335 337 8.406297 AGTTTCTGAAATGTTCTGTAAAGTTCC 58.594 33.333 6.06 0.00 0.00 3.62
336 338 9.439537 GAGTTTCTGAAATGTTCTGTAAAGTTC 57.560 33.333 6.06 0.00 0.00 3.01
343 345 4.792068 TGGGAGTTTCTGAAATGTTCTGT 58.208 39.130 6.06 0.00 0.00 3.41
367 369 2.760650 CCCTGAAAAATACCAAGAGGCC 59.239 50.000 0.00 0.00 39.06 5.19
371 373 6.042552 TGAAAATGCCCTGAAAAATACCAAGA 59.957 34.615 0.00 0.00 0.00 3.02
396 398 1.265454 GGTCATGTCGGGAAGGTCCT 61.265 60.000 0.00 0.00 36.57 3.85
397 399 1.221021 GGTCATGTCGGGAAGGTCC 59.779 63.158 0.00 0.00 35.23 4.46
418 420 1.364171 CGTAGAAGCCCTAGCGCAT 59.636 57.895 11.47 0.00 46.67 4.73
430 432 1.952102 GATGGGGTGGCGACGTAGAA 61.952 60.000 0.00 0.00 0.00 2.10
448 450 3.433598 GCCTGCCACATAGTAATGGAAGA 60.434 47.826 11.84 0.00 43.72 2.87
453 455 2.620115 CCAAGCCTGCCACATAGTAATG 59.380 50.000 0.00 0.00 39.17 1.90
467 469 2.034879 CGCAATGTCGTCCAAGCCT 61.035 57.895 0.00 0.00 0.00 4.58
472 474 1.196581 CAATCAACGCAATGTCGTCCA 59.803 47.619 3.54 0.00 42.46 4.02
478 480 2.476686 CGATGAGCAATCAACGCAATGT 60.477 45.455 0.00 0.00 34.68 2.71
484 486 1.061131 GTGGTCGATGAGCAATCAACG 59.939 52.381 0.00 1.99 41.75 4.10
503 505 1.523758 GGAGCCATCTTTGTGTTCGT 58.476 50.000 0.00 0.00 0.00 3.85
524 526 0.248907 ATAATCGTCGTGGCCTCGTG 60.249 55.000 25.10 18.70 0.00 4.35
533 535 2.117137 GATGTCACGCATAATCGTCGT 58.883 47.619 0.00 0.00 41.21 4.34
546 548 4.101448 AGGCAGCCGGGATGTCAC 62.101 66.667 20.17 7.60 0.00 3.67
570 572 1.949631 GGCGACATAGCACGGCTAC 60.950 63.158 7.62 0.00 44.24 3.58
588 590 1.445582 GGATAATAGGCGCGGTCGG 60.446 63.158 8.83 0.00 35.95 4.79
590 592 1.641577 GATGGATAATAGGCGCGGTC 58.358 55.000 8.83 0.00 0.00 4.79
594 596 3.165058 TCATCGATGGATAATAGGCGC 57.835 47.619 24.61 0.00 0.00 6.53
595 597 4.494484 TGTTCATCGATGGATAATAGGCG 58.506 43.478 24.61 0.00 0.00 5.52
598 600 6.973229 TGCATGTTCATCGATGGATAATAG 57.027 37.500 24.61 10.36 0.00 1.73
599 601 6.709846 TGTTGCATGTTCATCGATGGATAATA 59.290 34.615 24.61 10.88 0.00 0.98
615 617 2.485426 GCTAGTGTGTCATGTTGCATGT 59.515 45.455 8.68 0.00 0.00 3.21
650 652 2.356793 GCTCTATCGCATGCCGCT 60.357 61.111 13.15 1.58 39.08 5.52
651 653 3.418068 GGCTCTATCGCATGCCGC 61.418 66.667 13.15 5.24 35.79 6.53
669 671 1.902508 CCAGCAACTCAGGTCTCCTTA 59.097 52.381 0.00 0.00 0.00 2.69
675 677 2.354259 CTCAATCCAGCAACTCAGGTC 58.646 52.381 0.00 0.00 0.00 3.85
678 680 1.817357 TGCTCAATCCAGCAACTCAG 58.183 50.000 0.00 0.00 46.65 3.35
692 694 2.486636 CTAGGCGGTTGTCGTGCTCA 62.487 60.000 0.00 0.00 41.72 4.26
693 695 1.805945 CTAGGCGGTTGTCGTGCTC 60.806 63.158 0.00 0.00 41.72 4.26
696 698 0.527817 GATCCTAGGCGGTTGTCGTG 60.528 60.000 2.96 0.00 41.72 4.35
703 705 0.462047 CTTTTGCGATCCTAGGCGGT 60.462 55.000 2.96 0.00 0.00 5.68
705 707 0.931005 GACTTTTGCGATCCTAGGCG 59.069 55.000 2.96 3.91 0.00 5.52
707 709 3.743396 GCTATGACTTTTGCGATCCTAGG 59.257 47.826 0.82 0.82 0.00 3.02
709 711 3.133901 TGGCTATGACTTTTGCGATCCTA 59.866 43.478 0.00 0.00 0.00 2.94
803 1004 9.793259 AAATAGTATCACTGAAAACCTCTTTCA 57.207 29.630 0.43 0.43 36.98 2.69
886 1172 6.002082 ACTGGTTTGTTAGTCCCTTTGTATC 58.998 40.000 0.00 0.00 0.00 2.24
894 1191 4.517832 CCTTTGTACTGGTTTGTTAGTCCC 59.482 45.833 0.00 0.00 0.00 4.46
895 1192 4.023450 GCCTTTGTACTGGTTTGTTAGTCC 60.023 45.833 0.00 0.00 0.00 3.85
902 1199 2.687935 ACACTGCCTTTGTACTGGTTTG 59.312 45.455 0.00 0.00 0.00 2.93
910 1207 6.183360 CGAAAATGCTATACACTGCCTTTGTA 60.183 38.462 0.00 0.00 34.00 2.41
912 1209 5.030295 CGAAAATGCTATACACTGCCTTTG 58.970 41.667 0.00 0.00 30.01 2.77
918 1974 4.021822 CGCAACGAAAATGCTATACACTG 58.978 43.478 0.00 0.00 41.64 3.66
922 1978 2.372350 GGCGCAACGAAAATGCTATAC 58.628 47.619 10.83 0.00 41.64 1.47
927 1983 3.826691 GCGGCGCAACGAAAATGC 61.827 61.111 29.21 0.00 40.41 3.56
928 1984 3.171911 GGCGGCGCAACGAAAATG 61.172 61.111 34.36 0.00 35.47 2.32
945 2001 2.562738 GTGATGGTTTTTGGGAGGGAAG 59.437 50.000 0.00 0.00 0.00 3.46
955 3541 2.375014 AGGGGTTCGTGATGGTTTTT 57.625 45.000 0.00 0.00 0.00 1.94
959 3545 1.610554 CGGTAGGGGTTCGTGATGGT 61.611 60.000 0.00 0.00 0.00 3.55
1019 3605 2.594592 GGTGCGTGGAAGGTGCTT 60.595 61.111 0.00 0.00 0.00 3.91
1020 3606 4.643387 GGGTGCGTGGAAGGTGCT 62.643 66.667 0.00 0.00 0.00 4.40
1171 3760 1.208293 GGAAGCGAGTTGGAAGAGGAT 59.792 52.381 0.00 0.00 0.00 3.24
1431 4020 1.153168 GCCATTCTTAGCGGCCTCA 60.153 57.895 0.00 0.00 40.07 3.86
1452 4041 3.891586 GACGAAGACGAGCGCCACA 62.892 63.158 2.29 0.00 42.66 4.17
1677 4266 3.728718 CACACGCATTTAAAACACTCACC 59.271 43.478 0.00 0.00 0.00 4.02
1827 4416 0.593128 CCTCAAACACCTTCCTTGCG 59.407 55.000 0.00 0.00 0.00 4.85
1954 4543 7.677745 AGTGATATCAGTAGGGATAAGCTTCAT 59.322 37.037 11.48 0.00 33.73 2.57
1955 4544 7.013220 AGTGATATCAGTAGGGATAAGCTTCA 58.987 38.462 11.48 0.00 33.73 3.02
1993 4582 2.083774 GCAGTGGCTACAAGCATACAA 58.916 47.619 11.75 0.00 44.75 2.41
2025 4614 7.053498 TCTCATTGAAATATCGAAACCCATCA 58.947 34.615 0.00 0.00 0.00 3.07
2153 4742 2.046892 GCTCCAGTGGCATCGTGT 60.047 61.111 3.51 0.00 0.00 4.49
2340 4929 5.501156 GTGACCATTGTCTTCCTAAGGATT 58.499 41.667 0.00 0.00 42.28 3.01
2341 4930 4.383118 CGTGACCATTGTCTTCCTAAGGAT 60.383 45.833 0.00 0.00 42.28 3.24
2420 5009 5.092554 TCTATCGCCCATAACAAACTCAA 57.907 39.130 0.00 0.00 0.00 3.02
2661 5250 0.767375 AATGGCAGTCTCCACACACT 59.233 50.000 0.00 0.00 39.25 3.55
2760 5349 9.956720 CAATAATCTTTACATGAACATTCTCCC 57.043 33.333 0.00 0.00 0.00 4.30
2803 5392 2.104622 TGCATTCACCACTCTCAGTCAA 59.895 45.455 0.00 0.00 0.00 3.18
2804 5393 1.693606 TGCATTCACCACTCTCAGTCA 59.306 47.619 0.00 0.00 0.00 3.41
2811 5400 5.953183 TCATAAACATTGCATTCACCACTC 58.047 37.500 0.00 0.00 0.00 3.51
2816 5405 5.807011 GGAACCTCATAAACATTGCATTCAC 59.193 40.000 0.00 0.00 0.00 3.18
2825 5414 4.255510 AGGCATGGAACCTCATAAACAT 57.744 40.909 0.00 0.00 28.76 2.71
2826 5415 3.737559 AGGCATGGAACCTCATAAACA 57.262 42.857 0.00 0.00 28.76 2.83
2866 5456 3.067106 ACTGTTCTGCAACCATAAGTCG 58.933 45.455 0.00 0.00 0.00 4.18
2891 5481 4.989168 AGGTGTCGACAAATGAAGTTCTAC 59.011 41.667 21.95 2.42 0.00 2.59
3051 5641 2.012673 GTGCCATGTCCTGAAGCTTAG 58.987 52.381 0.00 0.00 0.00 2.18
3103 5693 8.849168 CACAATATTTCCAATAGAATGGTGCTA 58.151 33.333 0.00 0.00 41.46 3.49
3127 5720 4.611581 GCAGGACTCAGAAATTTTCGTCAC 60.612 45.833 13.88 6.85 34.02 3.67
3131 5724 4.470462 CAAGCAGGACTCAGAAATTTTCG 58.530 43.478 3.57 0.10 34.02 3.46
3154 5747 4.811024 TGAGCTTCTACAGAACTTGTTGTG 59.189 41.667 8.75 8.75 41.29 3.33
3174 5767 2.951726 ACACATGTGTCGACATCTGAG 58.048 47.619 25.76 22.93 41.12 3.35
3224 5817 0.492276 AGGTTACCCTCACACCTCCT 59.508 55.000 0.00 0.00 35.99 3.69
3234 5827 8.980832 ATGAGAATAATAGATGAGGTTACCCT 57.019 34.615 0.00 0.00 46.66 4.34
3269 5862 5.068460 TCCCACTTCCACATTTTGTAAGTTG 59.932 40.000 0.00 0.00 29.46 3.16
3298 5891 3.008375 TCTGCTGTATCTCTGGTTGCTTT 59.992 43.478 0.00 0.00 0.00 3.51
3331 5924 9.826574 GTAGTATATACTAGCAGTATCAGCTCT 57.173 37.037 20.62 0.00 40.37 4.09
3361 5954 4.832608 CGCCAGCTAACGGGGTCC 62.833 72.222 0.00 0.00 0.00 4.46
3362 5955 3.305177 TTCGCCAGCTAACGGGGTC 62.305 63.158 7.61 0.00 37.70 4.46
3363 5956 3.315949 TTCGCCAGCTAACGGGGT 61.316 61.111 7.61 0.00 37.70 4.95
3364 5957 2.818274 GTTCGCCAGCTAACGGGG 60.818 66.667 7.61 3.71 37.80 5.73
3365 5958 3.186047 CGTTCGCCAGCTAACGGG 61.186 66.667 18.42 0.00 43.52 5.28
3368 5961 1.414897 CGAACGTTCGCCAGCTAAC 59.585 57.895 34.54 1.91 44.26 2.34
3369 5962 3.850923 CGAACGTTCGCCAGCTAA 58.149 55.556 34.54 0.00 44.26 3.09
3378 5971 2.434359 CCCTCCTGGCGAACGTTC 60.434 66.667 18.47 18.47 0.00 3.95
3379 5972 4.016706 CCCCTCCTGGCGAACGTT 62.017 66.667 0.00 0.00 0.00 3.99
3395 5988 2.428960 AAACGTTCGCAAATGCCCCC 62.429 55.000 0.00 0.00 37.91 5.40
3396 5989 1.006688 AAACGTTCGCAAATGCCCC 60.007 52.632 0.00 0.00 37.91 5.80
3397 5990 1.334288 CGAAACGTTCGCAAATGCCC 61.334 55.000 0.00 0.00 46.97 5.36
3398 5991 2.050849 CGAAACGTTCGCAAATGCC 58.949 52.632 0.00 0.00 46.97 4.40
3407 6000 2.681152 AAACTGCCATCGAAACGTTC 57.319 45.000 0.00 0.00 0.00 3.95
3408 6001 3.562557 ACTAAAACTGCCATCGAAACGTT 59.437 39.130 0.00 0.00 0.00 3.99
3409 6002 3.135994 ACTAAAACTGCCATCGAAACGT 58.864 40.909 0.00 0.00 0.00 3.99
3410 6003 3.806316 ACTAAAACTGCCATCGAAACG 57.194 42.857 0.00 0.00 0.00 3.60
3411 6004 4.675114 CACAACTAAAACTGCCATCGAAAC 59.325 41.667 0.00 0.00 0.00 2.78
3412 6005 4.336993 ACACAACTAAAACTGCCATCGAAA 59.663 37.500 0.00 0.00 0.00 3.46
3413 6006 3.880490 ACACAACTAAAACTGCCATCGAA 59.120 39.130 0.00 0.00 0.00 3.71
3414 6007 3.249799 CACACAACTAAAACTGCCATCGA 59.750 43.478 0.00 0.00 0.00 3.59
3415 6008 3.003275 ACACACAACTAAAACTGCCATCG 59.997 43.478 0.00 0.00 0.00 3.84
3416 6009 4.290155 CACACACAACTAAAACTGCCATC 58.710 43.478 0.00 0.00 0.00 3.51
3417 6010 3.068024 CCACACACAACTAAAACTGCCAT 59.932 43.478 0.00 0.00 0.00 4.40
3418 6011 2.425312 CCACACACAACTAAAACTGCCA 59.575 45.455 0.00 0.00 0.00 4.92
3419 6012 2.223711 CCCACACACAACTAAAACTGCC 60.224 50.000 0.00 0.00 0.00 4.85
3420 6013 2.223711 CCCCACACACAACTAAAACTGC 60.224 50.000 0.00 0.00 0.00 4.40
3421 6014 3.020984 ACCCCACACACAACTAAAACTG 58.979 45.455 0.00 0.00 0.00 3.16
3422 6015 3.020984 CACCCCACACACAACTAAAACT 58.979 45.455 0.00 0.00 0.00 2.66
3423 6016 2.100087 CCACCCCACACACAACTAAAAC 59.900 50.000 0.00 0.00 0.00 2.43
3424 6017 2.379972 CCACCCCACACACAACTAAAA 58.620 47.619 0.00 0.00 0.00 1.52
3425 6018 2.024825 GCCACCCCACACACAACTAAA 61.025 52.381 0.00 0.00 0.00 1.85
3426 6019 0.466555 GCCACCCCACACACAACTAA 60.467 55.000 0.00 0.00 0.00 2.24
3427 6020 1.149627 GCCACCCCACACACAACTA 59.850 57.895 0.00 0.00 0.00 2.24
3428 6021 2.123897 GCCACCCCACACACAACT 60.124 61.111 0.00 0.00 0.00 3.16
3429 6022 2.441164 TGCCACCCCACACACAAC 60.441 61.111 0.00 0.00 0.00 3.32
3430 6023 2.123939 CTGCCACCCCACACACAA 60.124 61.111 0.00 0.00 0.00 3.33
3431 6024 2.506884 AAACTGCCACCCCACACACA 62.507 55.000 0.00 0.00 0.00 3.72
3432 6025 1.734388 GAAACTGCCACCCCACACAC 61.734 60.000 0.00 0.00 0.00 3.82
3433 6026 1.454847 GAAACTGCCACCCCACACA 60.455 57.895 0.00 0.00 0.00 3.72
3434 6027 0.755327 AAGAAACTGCCACCCCACAC 60.755 55.000 0.00 0.00 0.00 3.82
3435 6028 0.467290 GAAGAAACTGCCACCCCACA 60.467 55.000 0.00 0.00 0.00 4.17
3436 6029 0.467290 TGAAGAAACTGCCACCCCAC 60.467 55.000 0.00 0.00 0.00 4.61
3437 6030 0.178992 CTGAAGAAACTGCCACCCCA 60.179 55.000 0.00 0.00 0.00 4.96
3438 6031 1.527433 GCTGAAGAAACTGCCACCCC 61.527 60.000 0.00 0.00 0.00 4.95
3439 6032 0.823356 TGCTGAAGAAACTGCCACCC 60.823 55.000 0.00 0.00 34.63 4.61
3440 6033 1.068055 CATGCTGAAGAAACTGCCACC 60.068 52.381 0.00 0.00 34.63 4.61
3441 6034 1.068055 CCATGCTGAAGAAACTGCCAC 60.068 52.381 0.00 0.00 34.63 5.01
3442 6035 1.250328 CCATGCTGAAGAAACTGCCA 58.750 50.000 0.00 0.00 34.63 4.92
3443 6036 0.108945 GCCATGCTGAAGAAACTGCC 60.109 55.000 0.00 0.00 34.63 4.85
3444 6037 0.599558 TGCCATGCTGAAGAAACTGC 59.400 50.000 0.00 0.00 35.76 4.40
3445 6038 3.587797 AATGCCATGCTGAAGAAACTG 57.412 42.857 0.00 0.00 0.00 3.16
3446 6039 4.612264 AAAATGCCATGCTGAAGAAACT 57.388 36.364 0.00 0.00 0.00 2.66
3465 6058 4.408596 AGTTTTGAGCCTTCATCCCAAAAA 59.591 37.500 0.00 0.00 38.10 1.94
3466 6059 3.966665 AGTTTTGAGCCTTCATCCCAAAA 59.033 39.130 0.00 0.00 35.26 2.44
3467 6060 3.321682 CAGTTTTGAGCCTTCATCCCAAA 59.678 43.478 0.00 0.00 32.27 3.28
3468 6061 2.892852 CAGTTTTGAGCCTTCATCCCAA 59.107 45.455 0.00 0.00 32.27 4.12
3469 6062 2.517959 CAGTTTTGAGCCTTCATCCCA 58.482 47.619 0.00 0.00 32.27 4.37
3470 6063 1.203287 GCAGTTTTGAGCCTTCATCCC 59.797 52.381 0.00 0.00 32.27 3.85
3471 6064 2.643933 GCAGTTTTGAGCCTTCATCC 57.356 50.000 0.00 0.00 32.27 3.51
3479 6072 0.813821 GGAGGATGGCAGTTTTGAGC 59.186 55.000 0.00 0.00 0.00 4.26
3480 6073 1.272092 TGGGAGGATGGCAGTTTTGAG 60.272 52.381 0.00 0.00 0.00 3.02
3481 6074 0.776810 TGGGAGGATGGCAGTTTTGA 59.223 50.000 0.00 0.00 0.00 2.69
3482 6075 1.180029 CTGGGAGGATGGCAGTTTTG 58.820 55.000 0.00 0.00 0.00 2.44
3483 6076 1.075601 TCTGGGAGGATGGCAGTTTT 58.924 50.000 0.00 0.00 0.00 2.43
3484 6077 1.075601 TTCTGGGAGGATGGCAGTTT 58.924 50.000 0.00 0.00 0.00 2.66
3485 6078 1.075601 TTTCTGGGAGGATGGCAGTT 58.924 50.000 0.00 0.00 0.00 3.16
3486 6079 1.075601 TTTTCTGGGAGGATGGCAGT 58.924 50.000 0.00 0.00 0.00 4.40
3487 6080 1.467920 GTTTTCTGGGAGGATGGCAG 58.532 55.000 0.00 0.00 0.00 4.85
3488 6081 0.322456 CGTTTTCTGGGAGGATGGCA 60.322 55.000 0.00 0.00 0.00 4.92
3489 6082 1.657751 GCGTTTTCTGGGAGGATGGC 61.658 60.000 0.00 0.00 0.00 4.40
3490 6083 1.032114 GGCGTTTTCTGGGAGGATGG 61.032 60.000 0.00 0.00 0.00 3.51
3491 6084 0.322456 TGGCGTTTTCTGGGAGGATG 60.322 55.000 0.00 0.00 0.00 3.51
3492 6085 0.625849 ATGGCGTTTTCTGGGAGGAT 59.374 50.000 0.00 0.00 0.00 3.24
3493 6086 0.322456 CATGGCGTTTTCTGGGAGGA 60.322 55.000 0.00 0.00 0.00 3.71
3494 6087 1.937546 GCATGGCGTTTTCTGGGAGG 61.938 60.000 0.00 0.00 0.00 4.30
3495 6088 0.962356 AGCATGGCGTTTTCTGGGAG 60.962 55.000 0.00 0.00 0.00 4.30
3496 6089 1.074775 AGCATGGCGTTTTCTGGGA 59.925 52.632 0.00 0.00 0.00 4.37
3497 6090 1.213537 CAGCATGGCGTTTTCTGGG 59.786 57.895 0.00 0.00 0.00 4.45
3498 6091 0.314935 AACAGCATGGCGTTTTCTGG 59.685 50.000 0.00 0.00 43.62 3.86
3499 6092 2.138596 AAACAGCATGGCGTTTTCTG 57.861 45.000 0.00 0.00 43.62 3.02
3500 6093 2.100584 TCAAAACAGCATGGCGTTTTCT 59.899 40.909 15.52 1.50 43.62 2.52
3501 6094 2.468831 TCAAAACAGCATGGCGTTTTC 58.531 42.857 15.52 0.00 43.62 2.29
3502 6095 2.593346 TCAAAACAGCATGGCGTTTT 57.407 40.000 13.80 13.80 43.62 2.43
3503 6096 2.100584 TCTTCAAAACAGCATGGCGTTT 59.899 40.909 0.00 0.00 43.62 3.60
3504 6097 1.680735 TCTTCAAAACAGCATGGCGTT 59.319 42.857 0.00 0.00 43.62 4.84
3505 6098 1.317613 TCTTCAAAACAGCATGGCGT 58.682 45.000 0.00 0.00 43.62 5.68
3506 6099 2.420628 TTCTTCAAAACAGCATGGCG 57.579 45.000 0.00 0.00 43.62 5.69
3507 6100 3.492011 CAGTTTCTTCAAAACAGCATGGC 59.508 43.478 0.00 0.00 43.62 4.40
3508 6101 3.492011 GCAGTTTCTTCAAAACAGCATGG 59.508 43.478 11.58 0.00 43.62 3.66
3509 6102 4.114073 TGCAGTTTCTTCAAAACAGCATG 58.886 39.130 14.21 0.00 44.08 4.06
3510 6103 4.389890 TGCAGTTTCTTCAAAACAGCAT 57.610 36.364 14.21 0.00 44.08 3.79
3511 6104 3.865011 TGCAGTTTCTTCAAAACAGCA 57.135 38.095 14.21 14.21 45.80 4.41
3512 6105 3.737774 GGATGCAGTTTCTTCAAAACAGC 59.262 43.478 10.07 10.07 41.23 4.40
3513 6106 4.038402 AGGGATGCAGTTTCTTCAAAACAG 59.962 41.667 0.00 0.00 32.81 3.16
3514 6107 3.960102 AGGGATGCAGTTTCTTCAAAACA 59.040 39.130 0.00 0.00 32.81 2.83
3515 6108 4.037923 TCAGGGATGCAGTTTCTTCAAAAC 59.962 41.667 0.00 0.00 0.00 2.43
3516 6109 4.037923 GTCAGGGATGCAGTTTCTTCAAAA 59.962 41.667 0.00 0.00 0.00 2.44
3517 6110 3.569701 GTCAGGGATGCAGTTTCTTCAAA 59.430 43.478 0.00 0.00 0.00 2.69
3518 6111 3.149196 GTCAGGGATGCAGTTTCTTCAA 58.851 45.455 0.00 0.00 0.00 2.69
3519 6112 2.106338 TGTCAGGGATGCAGTTTCTTCA 59.894 45.455 0.00 0.00 0.00 3.02
3520 6113 2.485814 GTGTCAGGGATGCAGTTTCTTC 59.514 50.000 0.00 0.00 0.00 2.87
3521 6114 2.158623 TGTGTCAGGGATGCAGTTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
3522 6115 1.421268 TGTGTCAGGGATGCAGTTTCT 59.579 47.619 0.00 0.00 0.00 2.52
3523 6116 1.896220 TGTGTCAGGGATGCAGTTTC 58.104 50.000 0.00 0.00 0.00 2.78
3524 6117 2.363306 TTGTGTCAGGGATGCAGTTT 57.637 45.000 0.00 0.00 0.00 2.66
3525 6118 2.592102 ATTGTGTCAGGGATGCAGTT 57.408 45.000 0.00 0.00 0.00 3.16
3526 6119 2.592102 AATTGTGTCAGGGATGCAGT 57.408 45.000 0.00 0.00 0.00 4.40
3527 6120 5.047802 AGTTTTAATTGTGTCAGGGATGCAG 60.048 40.000 0.00 0.00 0.00 4.41
3528 6121 4.832266 AGTTTTAATTGTGTCAGGGATGCA 59.168 37.500 0.00 0.00 0.00 3.96
3529 6122 5.163513 CAGTTTTAATTGTGTCAGGGATGC 58.836 41.667 0.00 0.00 0.00 3.91
3530 6123 5.163513 GCAGTTTTAATTGTGTCAGGGATG 58.836 41.667 0.00 0.00 0.00 3.51
3531 6124 4.220602 GGCAGTTTTAATTGTGTCAGGGAT 59.779 41.667 0.00 0.00 0.00 3.85
3532 6125 3.572255 GGCAGTTTTAATTGTGTCAGGGA 59.428 43.478 0.00 0.00 0.00 4.20
3533 6126 3.320541 TGGCAGTTTTAATTGTGTCAGGG 59.679 43.478 0.00 0.00 0.00 4.45
3534 6127 4.278170 TCTGGCAGTTTTAATTGTGTCAGG 59.722 41.667 15.27 0.00 0.00 3.86
3535 6128 5.437289 TCTGGCAGTTTTAATTGTGTCAG 57.563 39.130 15.27 6.70 0.00 3.51
3536 6129 5.843673 TTCTGGCAGTTTTAATTGTGTCA 57.156 34.783 15.27 0.00 0.00 3.58
3537 6130 7.532682 TTTTTCTGGCAGTTTTAATTGTGTC 57.467 32.000 15.27 0.00 0.00 3.67
3558 6151 3.070878 AGGGTGGCATTTCGAATGTTTTT 59.929 39.130 0.00 0.00 0.00 1.94
3559 6152 2.632512 AGGGTGGCATTTCGAATGTTTT 59.367 40.909 0.00 0.00 0.00 2.43
3560 6153 2.231235 GAGGGTGGCATTTCGAATGTTT 59.769 45.455 0.00 0.00 0.00 2.83
3561 6154 1.818674 GAGGGTGGCATTTCGAATGTT 59.181 47.619 0.00 0.00 0.00 2.71
3562 6155 1.004745 AGAGGGTGGCATTTCGAATGT 59.995 47.619 0.00 0.00 0.00 2.71
3563 6156 1.672881 GAGAGGGTGGCATTTCGAATG 59.327 52.381 0.00 0.86 0.00 2.67
3564 6157 1.408822 GGAGAGGGTGGCATTTCGAAT 60.409 52.381 0.00 0.00 0.00 3.34
3565 6158 0.035439 GGAGAGGGTGGCATTTCGAA 60.035 55.000 0.00 0.00 0.00 3.71
3566 6159 1.602237 GGAGAGGGTGGCATTTCGA 59.398 57.895 0.00 0.00 0.00 3.71
3567 6160 1.452108 GGGAGAGGGTGGCATTTCG 60.452 63.158 0.00 0.00 0.00 3.46
3568 6161 0.394899 CTGGGAGAGGGTGGCATTTC 60.395 60.000 0.00 0.00 0.00 2.17
3569 6162 1.693640 CTGGGAGAGGGTGGCATTT 59.306 57.895 0.00 0.00 0.00 2.32
3570 6163 2.988839 GCTGGGAGAGGGTGGCATT 61.989 63.158 0.00 0.00 0.00 3.56
3571 6164 3.415087 GCTGGGAGAGGGTGGCAT 61.415 66.667 0.00 0.00 0.00 4.40
3572 6165 4.980592 TGCTGGGAGAGGGTGGCA 62.981 66.667 0.00 0.00 0.00 4.92
3573 6166 3.210012 TTTGCTGGGAGAGGGTGGC 62.210 63.158 0.00 0.00 0.00 5.01
3574 6167 1.303643 GTTTGCTGGGAGAGGGTGG 60.304 63.158 0.00 0.00 0.00 4.61
3575 6168 1.672356 CGTTTGCTGGGAGAGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
3576 6169 2.113243 GACGTTTGCTGGGAGAGGGT 62.113 60.000 0.00 0.00 0.00 4.34
3577 6170 1.376037 GACGTTTGCTGGGAGAGGG 60.376 63.158 0.00 0.00 0.00 4.30
3578 6171 0.671781 CTGACGTTTGCTGGGAGAGG 60.672 60.000 0.00 0.00 0.00 3.69
3579 6172 1.294659 GCTGACGTTTGCTGGGAGAG 61.295 60.000 6.49 0.00 0.00 3.20
3580 6173 1.301716 GCTGACGTTTGCTGGGAGA 60.302 57.895 6.49 0.00 0.00 3.71
3581 6174 2.328099 GGCTGACGTTTGCTGGGAG 61.328 63.158 12.25 0.00 0.00 4.30
3582 6175 2.281484 GGCTGACGTTTGCTGGGA 60.281 61.111 12.25 0.00 0.00 4.37
3583 6176 2.594303 TGGCTGACGTTTGCTGGG 60.594 61.111 12.25 0.00 0.00 4.45
3584 6177 0.957395 ATCTGGCTGACGTTTGCTGG 60.957 55.000 12.25 6.82 0.00 4.85
3585 6178 1.725641 TATCTGGCTGACGTTTGCTG 58.274 50.000 12.25 7.11 0.00 4.41
3586 6179 2.028112 TCTTATCTGGCTGACGTTTGCT 60.028 45.455 12.25 0.00 0.00 3.91
3587 6180 2.346803 TCTTATCTGGCTGACGTTTGC 58.653 47.619 0.00 5.34 0.00 3.68
3588 6181 5.406780 GGATATCTTATCTGGCTGACGTTTG 59.593 44.000 2.05 0.00 0.00 2.93
3589 6182 5.542779 GGATATCTTATCTGGCTGACGTTT 58.457 41.667 2.05 0.00 0.00 3.60
3590 6183 4.321304 CGGATATCTTATCTGGCTGACGTT 60.321 45.833 2.05 0.00 0.00 3.99
3591 6184 3.191581 CGGATATCTTATCTGGCTGACGT 59.808 47.826 2.05 0.00 0.00 4.34
3592 6185 3.191581 ACGGATATCTTATCTGGCTGACG 59.808 47.826 2.05 0.00 0.00 4.35
3593 6186 4.792521 ACGGATATCTTATCTGGCTGAC 57.207 45.455 2.05 0.00 0.00 3.51
3594 6187 5.571285 AGTACGGATATCTTATCTGGCTGA 58.429 41.667 2.05 0.00 0.00 4.26
3595 6188 5.906113 AGTACGGATATCTTATCTGGCTG 57.094 43.478 2.05 0.00 0.00 4.85
3596 6189 6.482524 TGTAGTACGGATATCTTATCTGGCT 58.517 40.000 2.05 7.64 0.00 4.75
3597 6190 6.754702 TGTAGTACGGATATCTTATCTGGC 57.245 41.667 2.05 1.87 0.00 4.85
3598 6191 9.790389 GAATTGTAGTACGGATATCTTATCTGG 57.210 37.037 2.05 0.00 0.00 3.86
3604 6197 9.640963 GCATTAGAATTGTAGTACGGATATCTT 57.359 33.333 2.05 0.00 0.00 2.40
3605 6198 8.251721 GGCATTAGAATTGTAGTACGGATATCT 58.748 37.037 2.05 0.00 0.00 1.98
3606 6199 7.220300 CGGCATTAGAATTGTAGTACGGATATC 59.780 40.741 0.00 0.00 0.00 1.63
3607 6200 7.033791 CGGCATTAGAATTGTAGTACGGATAT 58.966 38.462 0.00 0.00 0.00 1.63
3608 6201 6.384224 CGGCATTAGAATTGTAGTACGGATA 58.616 40.000 0.00 0.00 0.00 2.59
3609 6202 5.227908 CGGCATTAGAATTGTAGTACGGAT 58.772 41.667 0.00 0.00 0.00 4.18
3610 6203 4.500205 CCGGCATTAGAATTGTAGTACGGA 60.500 45.833 12.07 0.00 38.77 4.69
3611 6204 3.739300 CCGGCATTAGAATTGTAGTACGG 59.261 47.826 0.00 6.21 0.00 4.02
3612 6205 4.443394 GTCCGGCATTAGAATTGTAGTACG 59.557 45.833 0.00 0.00 0.00 3.67
3613 6206 4.748600 GGTCCGGCATTAGAATTGTAGTAC 59.251 45.833 0.00 0.00 0.00 2.73
3614 6207 4.652421 AGGTCCGGCATTAGAATTGTAGTA 59.348 41.667 0.00 0.00 0.00 1.82
3615 6208 3.454812 AGGTCCGGCATTAGAATTGTAGT 59.545 43.478 0.00 0.00 0.00 2.73
3616 6209 4.058817 GAGGTCCGGCATTAGAATTGTAG 58.941 47.826 0.00 0.00 0.00 2.74
3617 6210 3.709653 AGAGGTCCGGCATTAGAATTGTA 59.290 43.478 0.00 0.00 0.00 2.41
3618 6211 2.505819 AGAGGTCCGGCATTAGAATTGT 59.494 45.455 0.00 0.00 0.00 2.71
3619 6212 3.199880 AGAGGTCCGGCATTAGAATTG 57.800 47.619 0.00 0.00 0.00 2.32
3620 6213 3.545703 CAAGAGGTCCGGCATTAGAATT 58.454 45.455 0.00 0.00 0.00 2.17
3621 6214 2.746472 GCAAGAGGTCCGGCATTAGAAT 60.746 50.000 0.00 0.00 0.00 2.40
3622 6215 1.406887 GCAAGAGGTCCGGCATTAGAA 60.407 52.381 0.00 0.00 0.00 2.10
3633 6226 5.930135 TGAAATAAGATAGGGCAAGAGGTC 58.070 41.667 0.00 0.00 0.00 3.85
3638 6231 7.650903 GCAATTTCTGAAATAAGATAGGGCAAG 59.349 37.037 15.45 0.00 0.00 4.01
3639 6232 7.342799 AGCAATTTCTGAAATAAGATAGGGCAA 59.657 33.333 15.45 0.00 0.00 4.52
3640 6233 6.835488 AGCAATTTCTGAAATAAGATAGGGCA 59.165 34.615 15.45 0.00 0.00 5.36
3641 6234 7.282332 AGCAATTTCTGAAATAAGATAGGGC 57.718 36.000 15.45 9.38 0.00 5.19
3642 6235 9.566432 AGTAGCAATTTCTGAAATAAGATAGGG 57.434 33.333 15.45 1.38 0.00 3.53
3660 6253 8.834465 CAATGCAGACTATTTTAGAGTAGCAAT 58.166 33.333 0.00 0.00 39.79 3.56
3665 6258 9.719355 TTTGACAATGCAGACTATTTTAGAGTA 57.281 29.630 0.00 0.00 0.00 2.59
3666 6259 8.621532 TTTGACAATGCAGACTATTTTAGAGT 57.378 30.769 0.00 0.00 0.00 3.24
3703 6296 2.604614 GCAGTTAAAACACCGCTGGAAG 60.605 50.000 1.50 0.00 0.00 3.46
3704 6297 1.335496 GCAGTTAAAACACCGCTGGAA 59.665 47.619 1.50 0.00 0.00 3.53
3705 6298 0.948678 GCAGTTAAAACACCGCTGGA 59.051 50.000 1.50 0.00 0.00 3.86
3706 6299 0.951558 AGCAGTTAAAACACCGCTGG 59.048 50.000 4.33 0.00 32.39 4.85
3707 6300 2.384382 CAAGCAGTTAAAACACCGCTG 58.616 47.619 5.54 0.00 33.42 5.18
3708 6301 1.336755 CCAAGCAGTTAAAACACCGCT 59.663 47.619 0.00 0.00 34.18 5.52
3709 6302 1.766069 CCAAGCAGTTAAAACACCGC 58.234 50.000 0.00 0.00 0.00 5.68
3710 6303 1.336755 AGCCAAGCAGTTAAAACACCG 59.663 47.619 0.00 0.00 0.00 4.94
3711 6304 2.742774 CAGCCAAGCAGTTAAAACACC 58.257 47.619 0.00 0.00 0.00 4.16
3712 6305 2.127251 GCAGCCAAGCAGTTAAAACAC 58.873 47.619 0.00 0.00 0.00 3.32
3713 6306 1.068434 GGCAGCCAAGCAGTTAAAACA 59.932 47.619 6.55 0.00 35.83 2.83
3714 6307 1.605457 GGGCAGCCAAGCAGTTAAAAC 60.605 52.381 15.19 0.00 35.83 2.43
3715 6308 0.678950 GGGCAGCCAAGCAGTTAAAA 59.321 50.000 15.19 0.00 35.83 1.52
3716 6309 0.178964 AGGGCAGCCAAGCAGTTAAA 60.179 50.000 15.19 0.00 35.83 1.52
3717 6310 0.895100 CAGGGCAGCCAAGCAGTTAA 60.895 55.000 15.19 0.00 35.83 2.01
3718 6311 1.303561 CAGGGCAGCCAAGCAGTTA 60.304 57.895 15.19 0.00 35.83 2.24
3719 6312 2.599578 CAGGGCAGCCAAGCAGTT 60.600 61.111 15.19 0.00 35.83 3.16
3722 6315 2.711883 TAAAGCAGGGCAGCCAAGCA 62.712 55.000 24.48 6.04 35.83 3.91
3723 6316 1.325476 ATAAAGCAGGGCAGCCAAGC 61.325 55.000 15.19 16.45 34.23 4.01
3724 6317 0.743097 GATAAAGCAGGGCAGCCAAG 59.257 55.000 15.19 5.82 34.23 3.61
3725 6318 1.031571 CGATAAAGCAGGGCAGCCAA 61.032 55.000 15.19 0.00 34.23 4.52
3726 6319 1.451927 CGATAAAGCAGGGCAGCCA 60.452 57.895 15.19 0.00 34.23 4.75
3727 6320 0.536006 ATCGATAAAGCAGGGCAGCC 60.536 55.000 1.26 1.26 34.23 4.85
3728 6321 0.590195 CATCGATAAAGCAGGGCAGC 59.410 55.000 0.00 0.00 0.00 5.25
3729 6322 1.959042 ACATCGATAAAGCAGGGCAG 58.041 50.000 0.00 0.00 0.00 4.85
3730 6323 3.769739 ATACATCGATAAAGCAGGGCA 57.230 42.857 0.00 0.00 0.00 5.36
3731 6324 4.319177 AGAATACATCGATAAAGCAGGGC 58.681 43.478 0.00 0.00 0.00 5.19
3732 6325 6.925211 TCTAGAATACATCGATAAAGCAGGG 58.075 40.000 0.00 0.00 0.00 4.45
3733 6326 7.821652 TCTCTAGAATACATCGATAAAGCAGG 58.178 38.462 0.00 0.00 0.00 4.85
3734 6327 9.684448 TTTCTCTAGAATACATCGATAAAGCAG 57.316 33.333 0.00 0.00 33.54 4.24
3760 6353 8.803799 CGTTGTACTTTTCTTGCTTGTATTTTT 58.196 29.630 0.00 0.00 0.00 1.94
3761 6354 8.185505 TCGTTGTACTTTTCTTGCTTGTATTTT 58.814 29.630 0.00 0.00 0.00 1.82
3762 6355 7.642586 GTCGTTGTACTTTTCTTGCTTGTATTT 59.357 33.333 0.00 0.00 0.00 1.40
3763 6356 7.130269 GTCGTTGTACTTTTCTTGCTTGTATT 58.870 34.615 0.00 0.00 0.00 1.89
3764 6357 6.259167 TGTCGTTGTACTTTTCTTGCTTGTAT 59.741 34.615 0.00 0.00 0.00 2.29
3765 6358 5.581479 TGTCGTTGTACTTTTCTTGCTTGTA 59.419 36.000 0.00 0.00 0.00 2.41
3766 6359 4.393680 TGTCGTTGTACTTTTCTTGCTTGT 59.606 37.500 0.00 0.00 0.00 3.16
3767 6360 4.728608 GTGTCGTTGTACTTTTCTTGCTTG 59.271 41.667 0.00 0.00 0.00 4.01
3768 6361 4.905269 GTGTCGTTGTACTTTTCTTGCTT 58.095 39.130 0.00 0.00 0.00 3.91
3769 6362 4.531659 GTGTCGTTGTACTTTTCTTGCT 57.468 40.909 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.