Multiple sequence alignment - TraesCS2D01G251800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G251800 chr2D 100.000 4320 0 0 1 4320 301820410 301816091 0.000000e+00 7978
1 TraesCS2D01G251800 chr2D 95.333 600 22 2 3727 4320 423956767 423956168 0.000000e+00 948
2 TraesCS2D01G251800 chr2D 95.326 599 23 1 3725 4318 128869548 128870146 0.000000e+00 946
3 TraesCS2D01G251800 chr2D 93.513 632 29 6 3696 4318 330947225 330947853 0.000000e+00 929
4 TraesCS2D01G251800 chr2D 83.077 130 20 2 2145 2273 572734003 572734131 2.730000e-22 117
5 TraesCS2D01G251800 chr2B 95.191 1622 34 10 1750 3346 356595985 356594383 0.000000e+00 2523
6 TraesCS2D01G251800 chr2B 92.817 1782 59 28 1 1753 356597758 356596017 0.000000e+00 2518
7 TraesCS2D01G251800 chr2B 93.617 141 5 4 3583 3721 372225973 372225835 1.570000e-49 207
8 TraesCS2D01G251800 chr2B 95.798 119 5 0 3464 3582 356583906 356583788 4.410000e-45 193
9 TraesCS2D01G251800 chr2A 91.224 1242 38 28 4 1209 378854244 378853038 0.000000e+00 1624
10 TraesCS2D01G251800 chr2A 95.088 855 13 15 2489 3342 378850911 378850085 0.000000e+00 1319
11 TraesCS2D01G251800 chr2A 95.189 769 16 3 1750 2497 378852618 378851850 0.000000e+00 1195
12 TraesCS2D01G251800 chr2A 95.113 266 9 1 1492 1753 378852915 378852650 2.400000e-112 416
13 TraesCS2D01G251800 chr2A 94.737 209 8 2 3375 3582 378849975 378849769 5.390000e-84 322
14 TraesCS2D01G251800 chr2A 95.620 137 3 3 3586 3721 757877081 757877215 2.620000e-52 217
15 TraesCS2D01G251800 chr2A 96.774 124 4 0 1252 1375 378853035 378852912 1.570000e-49 207
16 TraesCS2D01G251800 chr2A 81.022 137 23 3 2139 2273 711970081 711970216 5.910000e-19 106
17 TraesCS2D01G251800 chr6D 96.020 603 19 1 3723 4320 435436770 435437372 0.000000e+00 976
18 TraesCS2D01G251800 chr3D 95.492 599 22 1 3727 4320 280644245 280644843 0.000000e+00 952
19 TraesCS2D01G251800 chr3D 95.333 600 21 3 3727 4320 543908258 543908856 0.000000e+00 946
20 TraesCS2D01G251800 chr5D 95.341 601 22 2 3726 4320 519377620 519377020 0.000000e+00 950
21 TraesCS2D01G251800 chr5D 95.326 599 23 1 3727 4320 242382103 242382701 0.000000e+00 946
22 TraesCS2D01G251800 chr5D 86.979 192 25 0 2835 3026 488863900 488864091 2.620000e-52 217
23 TraesCS2D01G251800 chr6B 95.183 602 23 2 3725 4320 558605110 558605711 0.000000e+00 946
24 TraesCS2D01G251800 chr7D 94.964 139 7 0 3583 3721 91115840 91115978 7.270000e-53 219
25 TraesCS2D01G251800 chr7D 94.366 142 5 2 3583 3722 626497833 626497693 9.410000e-52 215
26 TraesCS2D01G251800 chr1D 94.245 139 8 0 3583 3721 229180141 229180003 3.380000e-51 213
27 TraesCS2D01G251800 chrUn 94.853 136 5 2 3583 3717 22424020 22423886 1.220000e-50 211
28 TraesCS2D01G251800 chr6A 94.118 136 8 0 3583 3718 21653787 21653922 1.570000e-49 207
29 TraesCS2D01G251800 chr3B 93.571 140 7 2 3583 3721 399647394 399647256 1.570000e-49 207
30 TraesCS2D01G251800 chr4B 93.056 144 5 5 3579 3721 448851242 448851103 5.660000e-49 206
31 TraesCS2D01G251800 chr5A 84.896 192 29 0 2835 3026 609871978 609872169 1.230000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G251800 chr2D 301816091 301820410 4319 True 7978.000000 7978 100.0000 1 4320 1 chr2D.!!$R1 4319
1 TraesCS2D01G251800 chr2D 423956168 423956767 599 True 948.000000 948 95.3330 3727 4320 1 chr2D.!!$R2 593
2 TraesCS2D01G251800 chr2D 128869548 128870146 598 False 946.000000 946 95.3260 3725 4318 1 chr2D.!!$F1 593
3 TraesCS2D01G251800 chr2D 330947225 330947853 628 False 929.000000 929 93.5130 3696 4318 1 chr2D.!!$F2 622
4 TraesCS2D01G251800 chr2B 356594383 356597758 3375 True 2520.500000 2523 94.0040 1 3346 2 chr2B.!!$R3 3345
5 TraesCS2D01G251800 chr2A 378849769 378854244 4475 True 847.166667 1624 94.6875 4 3582 6 chr2A.!!$R1 3578
6 TraesCS2D01G251800 chr6D 435436770 435437372 602 False 976.000000 976 96.0200 3723 4320 1 chr6D.!!$F1 597
7 TraesCS2D01G251800 chr3D 280644245 280644843 598 False 952.000000 952 95.4920 3727 4320 1 chr3D.!!$F1 593
8 TraesCS2D01G251800 chr3D 543908258 543908856 598 False 946.000000 946 95.3330 3727 4320 1 chr3D.!!$F2 593
9 TraesCS2D01G251800 chr5D 519377020 519377620 600 True 950.000000 950 95.3410 3726 4320 1 chr5D.!!$R1 594
10 TraesCS2D01G251800 chr5D 242382103 242382701 598 False 946.000000 946 95.3260 3727 4320 1 chr5D.!!$F1 593
11 TraesCS2D01G251800 chr6B 558605110 558605711 601 False 946.000000 946 95.1830 3725 4320 1 chr6B.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 957 0.394938 TCACCCACTTGCATGTACGT 59.605 50.000 4.73 0.0 0.00 3.57 F
1230 1275 1.004918 GAGCACCAACCGTACAGCT 60.005 57.895 0.00 0.0 34.61 4.24 F
3062 4120 0.543277 CATGCTCTTGTCCTGGGCTA 59.457 55.000 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 2383 0.105194 TGGAGAATATGAGGGGCGGA 60.105 55.0 0.00 0.0 0.00 5.54 R
3108 4170 0.109458 CATGCCATGCACACAGTCAC 60.109 55.0 0.00 0.0 43.04 3.67 R
4173 5331 1.361668 CTCGATTCGTGCCAACCCAG 61.362 60.0 5.89 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 74 3.068307 AGTGTGTCACAGAAGTACAGACC 59.932 47.826 5.74 0.00 37.94 3.85
113 117 5.016051 AGCTGACTGAGGTACATGTATTG 57.984 43.478 9.18 1.07 0.00 1.90
163 167 6.471233 TGTTGAAACATTGACATGGGTTAA 57.529 33.333 0.00 0.00 34.27 2.01
209 213 3.686726 GGTGACATGACCAACATTCTCTC 59.313 47.826 0.00 0.00 37.07 3.20
274 279 0.684535 TGGCGACAGTTGAGGATGAA 59.315 50.000 0.00 0.00 35.01 2.57
278 283 3.265791 GCGACAGTTGAGGATGAAGATT 58.734 45.455 0.00 0.00 0.00 2.40
279 284 3.308323 GCGACAGTTGAGGATGAAGATTC 59.692 47.826 0.00 0.00 0.00 2.52
283 288 5.486526 ACAGTTGAGGATGAAGATTCTGAC 58.513 41.667 0.00 0.00 0.00 3.51
291 321 4.509600 GGATGAAGATTCTGACGATTGTCC 59.490 45.833 10.69 0.00 44.86 4.02
337 369 2.046892 CGTCTGAAGCACCCCTGG 60.047 66.667 0.00 0.00 0.00 4.45
350 382 1.065418 ACCCCTGGTCGATCAATCAAC 60.065 52.381 0.00 0.00 0.00 3.18
351 383 1.668419 CCCTGGTCGATCAATCAACC 58.332 55.000 0.00 0.00 34.44 3.77
374 406 5.801947 CCAGAATAAATCCTGAAACGCAAAG 59.198 40.000 0.00 0.00 32.37 2.77
711 748 0.768622 CACCACAACCCCTAGTTCCA 59.231 55.000 0.00 0.00 36.18 3.53
712 749 1.354368 CACCACAACCCCTAGTTCCAT 59.646 52.381 0.00 0.00 36.18 3.41
713 750 1.633945 ACCACAACCCCTAGTTCCATC 59.366 52.381 0.00 0.00 36.18 3.51
714 751 1.064685 CCACAACCCCTAGTTCCATCC 60.065 57.143 0.00 0.00 36.18 3.51
850 889 5.404667 GGACGCTGTTACTATGTTATTAGCC 59.595 44.000 0.00 0.00 0.00 3.93
874 913 7.148018 GCCCATATTCTTTCTTTGTCTTGATCA 60.148 37.037 0.00 0.00 0.00 2.92
915 955 2.621055 TGTTTCACCCACTTGCATGTAC 59.379 45.455 4.73 0.00 0.00 2.90
916 956 1.518325 TTCACCCACTTGCATGTACG 58.482 50.000 4.73 1.20 0.00 3.67
917 957 0.394938 TCACCCACTTGCATGTACGT 59.605 50.000 4.73 0.00 0.00 3.57
918 958 1.619332 TCACCCACTTGCATGTACGTA 59.381 47.619 4.73 0.00 0.00 3.57
940 980 8.557029 ACGTAGTAATTTTCTTTTCTTCAGGTG 58.443 33.333 0.00 0.00 41.94 4.00
1174 1219 1.607148 CCTTGACGTTTTCTTCCCACC 59.393 52.381 0.00 0.00 0.00 4.61
1222 1267 4.371975 TGCGTAAGAGCACCAACC 57.628 55.556 0.00 0.00 42.92 3.77
1223 1268 1.666553 TGCGTAAGAGCACCAACCG 60.667 57.895 0.00 0.00 42.92 4.44
1228 1273 2.334838 GTAAGAGCACCAACCGTACAG 58.665 52.381 0.00 0.00 0.00 2.74
1230 1275 1.004918 GAGCACCAACCGTACAGCT 60.005 57.895 0.00 0.00 34.61 4.24
1304 1349 5.067954 TGATGTACTACCTTAGAGCGCATA 58.932 41.667 11.47 0.00 0.00 3.14
1377 1422 7.796958 TCTGATGTTTTCGATATATAGCGTG 57.203 36.000 18.95 0.00 36.36 5.34
1378 1423 7.368059 TCTGATGTTTTCGATATATAGCGTGT 58.632 34.615 18.95 1.90 36.36 4.49
1379 1424 8.508875 TCTGATGTTTTCGATATATAGCGTGTA 58.491 33.333 18.95 4.72 36.36 2.90
1380 1425 9.290483 CTGATGTTTTCGATATATAGCGTGTAT 57.710 33.333 18.95 8.62 36.36 2.29
1381 1426 9.072294 TGATGTTTTCGATATATAGCGTGTATG 57.928 33.333 18.95 0.00 36.36 2.39
1382 1427 7.273188 TGTTTTCGATATATAGCGTGTATGC 57.727 36.000 18.95 7.59 36.36 3.14
1383 1428 6.309494 TGTTTTCGATATATAGCGTGTATGCC 59.691 38.462 18.95 4.35 36.36 4.40
1384 1429 4.205323 TCGATATATAGCGTGTATGCCG 57.795 45.455 18.95 0.00 36.36 5.69
1385 1430 3.624410 TCGATATATAGCGTGTATGCCGT 59.376 43.478 18.95 0.00 36.36 5.68
1386 1431 4.095334 TCGATATATAGCGTGTATGCCGTT 59.905 41.667 18.95 0.00 36.36 4.44
1387 1432 4.796830 CGATATATAGCGTGTATGCCGTTT 59.203 41.667 12.14 0.00 34.65 3.60
1400 1445 2.571212 TGCCGTTTCAAGTCAATCAGT 58.429 42.857 0.00 0.00 0.00 3.41
1450 1495 8.944029 CCATGCTATTTGTCTAATATTCTCCTG 58.056 37.037 0.00 0.00 0.00 3.86
1488 1533 7.919621 ACAGCTATCAAGTTCCTATTTACGTAC 59.080 37.037 0.00 0.00 0.00 3.67
1489 1534 7.919091 CAGCTATCAAGTTCCTATTTACGTACA 59.081 37.037 0.00 0.00 0.00 2.90
1519 1564 7.862873 GCATAATAGGTTGCTCAAGTAATTTCC 59.137 37.037 0.00 0.00 35.95 3.13
1657 1706 3.282021 CATGACAACAACTATCCTGGGG 58.718 50.000 0.00 0.00 0.00 4.96
1747 1796 8.394121 GGTATTGTCTCTCTGAAATGTCATTTC 58.606 37.037 25.27 25.27 46.75 2.17
1941 2045 5.248477 ACCAAGTAGAATGAGGTGCTAAAGA 59.752 40.000 0.00 0.00 0.00 2.52
1942 2046 6.173339 CCAAGTAGAATGAGGTGCTAAAGAA 58.827 40.000 0.00 0.00 0.00 2.52
1943 2047 6.655003 CCAAGTAGAATGAGGTGCTAAAGAAA 59.345 38.462 0.00 0.00 0.00 2.52
1944 2048 7.148340 CCAAGTAGAATGAGGTGCTAAAGAAAG 60.148 40.741 0.00 0.00 0.00 2.62
2133 2242 6.262496 AGGCTTGTGAATGATCATAGTTCATG 59.738 38.462 9.04 9.32 38.01 3.07
2274 2383 6.465035 GGGAAGCTGATATCAAGAACAGGTAT 60.465 42.308 6.90 0.00 39.58 2.73
2492 2602 1.595093 GGGAAAATGGACCAGGTGCG 61.595 60.000 6.61 0.00 0.00 5.34
2550 3606 3.453717 TGTCTCTCTGAATTCTCATGGGG 59.546 47.826 7.05 0.00 0.00 4.96
2607 3663 1.491670 CTTCATATGTCGCCGGTCAG 58.508 55.000 1.90 0.00 0.00 3.51
2647 3703 4.583073 GCTGGAAGGTAAACCAAGAAGAAA 59.417 41.667 1.26 0.00 38.89 2.52
2648 3704 5.278512 GCTGGAAGGTAAACCAAGAAGAAAG 60.279 44.000 1.26 0.00 38.89 2.62
3035 4093 1.457303 GTCTTCGTAAGTGCAGTGCAG 59.543 52.381 20.42 6.50 40.08 4.41
3036 4094 1.068588 TCTTCGTAAGTGCAGTGCAGT 59.931 47.619 20.42 20.16 44.78 4.40
3037 4095 1.193203 CTTCGTAAGTGCAGTGCAGTG 59.807 52.381 25.71 17.56 41.77 3.66
3038 4096 1.205064 CGTAAGTGCAGTGCAGTGC 59.795 57.895 34.65 34.65 41.77 4.40
3059 4117 2.110967 CGCATGCTCTTGTCCTGGG 61.111 63.158 17.13 0.00 0.00 4.45
3060 4118 2.413142 GCATGCTCTTGTCCTGGGC 61.413 63.158 11.37 0.00 0.00 5.36
3061 4119 1.302285 CATGCTCTTGTCCTGGGCT 59.698 57.895 0.00 0.00 0.00 5.19
3062 4120 0.543277 CATGCTCTTGTCCTGGGCTA 59.457 55.000 0.00 0.00 0.00 3.93
3086 4148 0.781191 GCTAGCTAGCGAATTCAGCG 59.219 55.000 28.89 0.00 39.82 5.18
3107 4169 5.244851 AGCGAGTCATGATATTAGGTGTGAT 59.755 40.000 0.00 0.00 0.00 3.06
3108 4170 5.347093 GCGAGTCATGATATTAGGTGTGATG 59.653 44.000 0.00 0.00 0.00 3.07
3109 4171 6.450545 CGAGTCATGATATTAGGTGTGATGT 58.549 40.000 0.00 0.00 0.00 3.06
3110 4172 6.364435 CGAGTCATGATATTAGGTGTGATGTG 59.636 42.308 0.00 0.00 0.00 3.21
3111 4173 7.365497 AGTCATGATATTAGGTGTGATGTGA 57.635 36.000 0.00 0.00 0.00 3.58
3342 4404 1.243902 GGAACCAAATCAAGTCGGCA 58.756 50.000 0.00 0.00 0.00 5.69
3343 4405 1.068541 GGAACCAAATCAAGTCGGCAC 60.069 52.381 0.00 0.00 0.00 5.01
3425 4573 4.256110 GTGATATGGCATGGATCGATCAA 58.744 43.478 25.93 16.73 0.00 2.57
3502 4650 4.932268 TTAAGTACATTACGTGCAAGGC 57.068 40.909 4.26 0.00 31.60 4.35
3550 4698 3.599285 CTCTACCGGCCGCCAACAA 62.599 63.158 22.85 0.89 0.00 2.83
3582 4730 8.429641 TCTCCAAGAAACTAACTAGTTGAACAT 58.570 33.333 18.56 0.67 45.17 2.71
3583 4731 8.378172 TCCAAGAAACTAACTAGTTGAACATG 57.622 34.615 18.56 8.17 45.17 3.21
3584 4732 7.990886 TCCAAGAAACTAACTAGTTGAACATGT 59.009 33.333 18.56 0.00 45.17 3.21
3585 4733 8.621286 CCAAGAAACTAACTAGTTGAACATGTT 58.379 33.333 18.56 11.78 45.17 2.71
3586 4734 9.438291 CAAGAAACTAACTAGTTGAACATGTTG 57.562 33.333 17.58 10.83 45.17 3.33
3587 4735 8.958119 AGAAACTAACTAGTTGAACATGTTGA 57.042 30.769 17.58 4.23 45.17 3.18
3588 4736 9.391006 AGAAACTAACTAGTTGAACATGTTGAA 57.609 29.630 17.58 11.67 45.17 2.69
3601 4749 9.980780 TTGAACATGTTGAATATATTGTGTACG 57.019 29.630 17.58 0.00 0.00 3.67
3602 4750 9.157104 TGAACATGTTGAATATATTGTGTACGT 57.843 29.630 17.58 0.00 0.00 3.57
3603 4751 9.420966 GAACATGTTGAATATATTGTGTACGTG 57.579 33.333 17.58 8.92 0.00 4.49
3604 4752 8.487313 ACATGTTGAATATATTGTGTACGTGT 57.513 30.769 1.78 9.46 31.66 4.49
3605 4753 9.589111 ACATGTTGAATATATTGTGTACGTGTA 57.411 29.630 1.78 0.00 33.97 2.90
3616 4764 9.811995 ATATTGTGTACGTGTATATTGTGTCTT 57.188 29.630 0.00 0.00 0.00 3.01
3617 4765 6.937886 TGTGTACGTGTATATTGTGTCTTG 57.062 37.500 0.00 0.00 0.00 3.02
3618 4766 5.865013 TGTGTACGTGTATATTGTGTCTTGG 59.135 40.000 0.00 0.00 0.00 3.61
3619 4767 5.290158 GTGTACGTGTATATTGTGTCTTGGG 59.710 44.000 0.00 0.00 0.00 4.12
3620 4768 3.267483 ACGTGTATATTGTGTCTTGGGC 58.733 45.455 0.00 0.00 0.00 5.36
3621 4769 2.612212 CGTGTATATTGTGTCTTGGGCC 59.388 50.000 0.00 0.00 0.00 5.80
3622 4770 2.949644 GTGTATATTGTGTCTTGGGCCC 59.050 50.000 17.59 17.59 0.00 5.80
3623 4771 2.578480 TGTATATTGTGTCTTGGGCCCA 59.422 45.455 24.45 24.45 0.00 5.36
3624 4772 2.143876 ATATTGTGTCTTGGGCCCAC 57.856 50.000 28.70 14.93 0.00 4.61
3625 4773 0.039035 TATTGTGTCTTGGGCCCACC 59.961 55.000 28.70 16.48 40.81 4.61
3626 4774 1.729267 ATTGTGTCTTGGGCCCACCT 61.729 55.000 28.70 0.00 41.11 4.00
3627 4775 2.034221 GTGTCTTGGGCCCACCTC 59.966 66.667 28.70 17.85 41.11 3.85
3628 4776 3.256960 TGTCTTGGGCCCACCTCC 61.257 66.667 28.70 13.64 41.11 4.30
3629 4777 2.936032 GTCTTGGGCCCACCTCCT 60.936 66.667 28.70 0.00 41.11 3.69
3630 4778 1.615424 GTCTTGGGCCCACCTCCTA 60.615 63.158 28.70 7.92 41.11 2.94
3631 4779 1.306997 TCTTGGGCCCACCTCCTAG 60.307 63.158 28.70 19.04 41.11 3.02
3632 4780 1.616628 CTTGGGCCCACCTCCTAGT 60.617 63.158 28.70 0.00 41.11 2.57
3633 4781 1.151677 TTGGGCCCACCTCCTAGTT 60.152 57.895 28.70 0.00 41.11 2.24
3634 4782 0.774491 TTGGGCCCACCTCCTAGTTT 60.774 55.000 28.70 0.00 41.11 2.66
3635 4783 0.119561 TGGGCCCACCTCCTAGTTTA 59.880 55.000 24.45 0.00 41.11 2.01
3636 4784 1.274767 TGGGCCCACCTCCTAGTTTAT 60.275 52.381 24.45 0.00 41.11 1.40
3637 4785 1.420514 GGGCCCACCTCCTAGTTTATC 59.579 57.143 19.95 0.00 35.85 1.75
3638 4786 2.409570 GGCCCACCTCCTAGTTTATCT 58.590 52.381 0.00 0.00 0.00 1.98
3639 4787 2.104963 GGCCCACCTCCTAGTTTATCTG 59.895 54.545 0.00 0.00 0.00 2.90
3640 4788 2.772515 GCCCACCTCCTAGTTTATCTGT 59.227 50.000 0.00 0.00 0.00 3.41
3641 4789 3.965347 GCCCACCTCCTAGTTTATCTGTA 59.035 47.826 0.00 0.00 0.00 2.74
3642 4790 4.593634 GCCCACCTCCTAGTTTATCTGTAT 59.406 45.833 0.00 0.00 0.00 2.29
3643 4791 5.778750 GCCCACCTCCTAGTTTATCTGTATA 59.221 44.000 0.00 0.00 0.00 1.47
3644 4792 6.071278 GCCCACCTCCTAGTTTATCTGTATAG 60.071 46.154 0.00 0.00 0.00 1.31
3645 4793 7.011382 CCCACCTCCTAGTTTATCTGTATAGT 58.989 42.308 0.00 0.00 0.00 2.12
3646 4794 7.509659 CCCACCTCCTAGTTTATCTGTATAGTT 59.490 40.741 0.00 0.00 0.00 2.24
3647 4795 8.361139 CCACCTCCTAGTTTATCTGTATAGTTG 58.639 40.741 0.00 0.00 0.00 3.16
3648 4796 9.132923 CACCTCCTAGTTTATCTGTATAGTTGA 57.867 37.037 0.00 0.00 0.00 3.18
3649 4797 9.710818 ACCTCCTAGTTTATCTGTATAGTTGAA 57.289 33.333 0.00 0.00 0.00 2.69
3656 4804 9.436957 AGTTTATCTGTATAGTTGAAGTTGTGG 57.563 33.333 0.00 0.00 0.00 4.17
3657 4805 7.843490 TTATCTGTATAGTTGAAGTTGTGGC 57.157 36.000 0.00 0.00 0.00 5.01
3658 4806 4.575885 TCTGTATAGTTGAAGTTGTGGCC 58.424 43.478 0.00 0.00 0.00 5.36
3659 4807 3.681593 TGTATAGTTGAAGTTGTGGCCC 58.318 45.455 0.00 0.00 0.00 5.80
3660 4808 3.329520 TGTATAGTTGAAGTTGTGGCCCT 59.670 43.478 0.00 0.00 0.00 5.19
3661 4809 2.561478 TAGTTGAAGTTGTGGCCCTC 57.439 50.000 0.00 0.00 0.00 4.30
3662 4810 0.178990 AGTTGAAGTTGTGGCCCTCC 60.179 55.000 0.00 0.00 0.00 4.30
3663 4811 0.178990 GTTGAAGTTGTGGCCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
3664 4812 0.110486 TTGAAGTTGTGGCCCTCCTC 59.890 55.000 0.00 0.00 0.00 3.71
3665 4813 0.768221 TGAAGTTGTGGCCCTCCTCT 60.768 55.000 0.00 0.00 0.00 3.69
3666 4814 0.322008 GAAGTTGTGGCCCTCCTCTG 60.322 60.000 0.00 0.00 0.00 3.35
3667 4815 1.062488 AAGTTGTGGCCCTCCTCTGT 61.062 55.000 0.00 0.00 0.00 3.41
3668 4816 0.178903 AGTTGTGGCCCTCCTCTGTA 60.179 55.000 0.00 0.00 0.00 2.74
3669 4817 0.036294 GTTGTGGCCCTCCTCTGTAC 60.036 60.000 0.00 0.00 0.00 2.90
3670 4818 0.472925 TTGTGGCCCTCCTCTGTACA 60.473 55.000 0.00 0.00 0.00 2.90
3671 4819 0.252696 TGTGGCCCTCCTCTGTACAT 60.253 55.000 0.00 0.00 0.00 2.29
3672 4820 0.466124 GTGGCCCTCCTCTGTACATC 59.534 60.000 0.00 0.00 0.00 3.06
3673 4821 0.042581 TGGCCCTCCTCTGTACATCA 59.957 55.000 0.00 0.00 0.00 3.07
3674 4822 1.344393 TGGCCCTCCTCTGTACATCAT 60.344 52.381 0.00 0.00 0.00 2.45
3675 4823 2.090775 TGGCCCTCCTCTGTACATCATA 60.091 50.000 0.00 0.00 0.00 2.15
3676 4824 3.177228 GGCCCTCCTCTGTACATCATAT 58.823 50.000 0.00 0.00 0.00 1.78
3677 4825 4.202781 TGGCCCTCCTCTGTACATCATATA 60.203 45.833 0.00 0.00 0.00 0.86
3678 4826 4.965532 GGCCCTCCTCTGTACATCATATAT 59.034 45.833 0.00 0.00 0.00 0.86
3679 4827 6.136857 GGCCCTCCTCTGTACATCATATATA 58.863 44.000 0.00 0.00 0.00 0.86
3680 4828 6.041069 GGCCCTCCTCTGTACATCATATATAC 59.959 46.154 0.00 0.00 0.00 1.47
3681 4829 6.238786 GCCCTCCTCTGTACATCATATATACG 60.239 46.154 0.00 0.00 0.00 3.06
3682 4830 6.829298 CCCTCCTCTGTACATCATATATACGT 59.171 42.308 0.00 0.00 0.00 3.57
3683 4831 7.201741 CCCTCCTCTGTACATCATATATACGTG 60.202 44.444 0.00 0.00 0.00 4.49
3684 4832 7.085052 TCCTCTGTACATCATATATACGTGC 57.915 40.000 0.00 0.00 0.00 5.34
3685 4833 6.095021 TCCTCTGTACATCATATATACGTGCC 59.905 42.308 0.00 0.00 0.00 5.01
3686 4834 6.095580 CCTCTGTACATCATATATACGTGCCT 59.904 42.308 0.00 0.00 0.00 4.75
3687 4835 6.852664 TCTGTACATCATATATACGTGCCTG 58.147 40.000 0.00 0.00 0.00 4.85
3688 4836 5.961272 TGTACATCATATATACGTGCCTGG 58.039 41.667 0.00 0.00 0.00 4.45
3689 4837 5.479027 TGTACATCATATATACGTGCCTGGT 59.521 40.000 0.00 0.00 0.00 4.00
3690 4838 4.820897 ACATCATATATACGTGCCTGGTG 58.179 43.478 0.00 0.00 0.00 4.17
3691 4839 3.313012 TCATATATACGTGCCTGGTGC 57.687 47.619 0.00 0.00 41.77 5.01
3700 4848 2.359850 GCCTGGTGCACCGATCAA 60.360 61.111 30.07 12.05 40.77 2.57
3701 4849 1.750399 GCCTGGTGCACCGATCAAT 60.750 57.895 30.07 0.00 40.77 2.57
3721 4869 1.223417 GCAATTGTGTTGCACAGCCC 61.223 55.000 7.40 0.00 45.39 5.19
3850 5000 8.883789 AAAACCGTAATAAATGTGTGAATACG 57.116 30.769 0.00 0.00 35.65 3.06
3870 5020 2.699954 GTAGACCACAACATGTCCCTG 58.300 52.381 0.00 0.00 31.76 4.45
3919 5069 7.378181 GTTGATCAATAGATGGTTGTGGTTTT 58.622 34.615 12.12 0.00 33.72 2.43
3936 5086 3.826157 GGTTTTCTGACCATGGACATTGA 59.174 43.478 21.47 10.43 39.57 2.57
3991 5146 2.644299 TGTGATGGACAAGACCCAATCT 59.356 45.455 0.00 0.00 40.46 2.40
3995 5150 5.888161 GTGATGGACAAGACCCAATCTTAAT 59.112 40.000 0.00 0.00 46.52 1.40
4000 5155 7.638444 TGGACAAGACCCAATCTTAATCATAA 58.362 34.615 0.00 0.00 46.52 1.90
4023 5179 5.324739 CACAAGATCGTGTAGTTCGTTTT 57.675 39.130 14.10 0.00 32.00 2.43
4173 5331 2.166664 AGGTATCTCCGAAAGTGTCTGC 59.833 50.000 0.00 0.00 41.99 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 117 3.796717 GGCTGCTTTGACTTTTTGTACAC 59.203 43.478 0.00 0.00 0.00 2.90
121 125 4.141233 ACATTTTGGCTGCTTTGACTTT 57.859 36.364 0.00 0.00 0.00 2.66
190 194 5.083533 AGAGAGAGAATGTTGGTCATGTC 57.916 43.478 0.00 0.00 36.81 3.06
191 195 6.805016 ATAGAGAGAGAATGTTGGTCATGT 57.195 37.500 0.00 0.00 36.81 3.21
274 279 2.187958 TGGGGACAATCGTCAGAATCT 58.812 47.619 0.00 0.00 44.54 2.40
291 321 2.109304 TGGGGGTACTTTCTTTCTTGGG 59.891 50.000 0.00 0.00 0.00 4.12
337 369 7.227512 AGGATTTATTCTGGTTGATTGATCGAC 59.772 37.037 3.23 3.23 39.88 4.20
350 382 4.963276 TGCGTTTCAGGATTTATTCTGG 57.037 40.909 0.00 0.00 0.00 3.86
351 383 6.306356 CACTTTGCGTTTCAGGATTTATTCTG 59.694 38.462 0.00 0.00 0.00 3.02
472 504 2.017049 CCTTCCCTACAAAATCGCCAG 58.983 52.381 0.00 0.00 0.00 4.85
587 624 2.503895 AATTGAGCAGTTGAGGGAGG 57.496 50.000 0.00 0.00 0.00 4.30
591 628 4.272018 CGGAGAATAATTGAGCAGTTGAGG 59.728 45.833 0.00 0.00 0.00 3.86
711 748 1.082879 TGAGGGGAAGGAAGGAAGGAT 59.917 52.381 0.00 0.00 0.00 3.24
712 749 0.496382 TGAGGGGAAGGAAGGAAGGA 59.504 55.000 0.00 0.00 0.00 3.36
713 750 0.915364 CTGAGGGGAAGGAAGGAAGG 59.085 60.000 0.00 0.00 0.00 3.46
714 751 0.254462 GCTGAGGGGAAGGAAGGAAG 59.746 60.000 0.00 0.00 0.00 3.46
850 889 9.731819 CATGATCAAGACAAAGAAAGAATATGG 57.268 33.333 0.00 0.00 0.00 2.74
874 913 7.502226 TGAAACACCTTGTGAAGAAGATTACAT 59.498 33.333 0.49 0.00 36.96 2.29
915 955 8.770828 TCACCTGAAGAAAAGAAAATTACTACG 58.229 33.333 0.00 0.00 0.00 3.51
916 956 9.880064 GTCACCTGAAGAAAAGAAAATTACTAC 57.120 33.333 0.00 0.00 0.00 2.73
917 957 9.847224 AGTCACCTGAAGAAAAGAAAATTACTA 57.153 29.630 0.00 0.00 0.00 1.82
918 958 8.753497 AGTCACCTGAAGAAAAGAAAATTACT 57.247 30.769 0.00 0.00 0.00 2.24
940 980 1.798813 CAACAAGAGGCGTGGTTAGTC 59.201 52.381 0.00 0.00 0.00 2.59
947 987 3.554524 CATACAAACAACAAGAGGCGTG 58.445 45.455 0.00 0.00 0.00 5.34
997 1037 4.460034 TGTGACATTGGTGATCTCCATTTG 59.540 41.667 16.93 17.92 37.33 2.32
1174 1219 3.314553 ACAAAACAGACACGGAGATACG 58.685 45.455 0.00 0.00 40.31 3.06
1222 1267 3.541516 GCATAACGTTAGCAAGCTGTACG 60.542 47.826 21.62 21.62 39.53 3.67
1223 1268 3.617263 AGCATAACGTTAGCAAGCTGTAC 59.383 43.478 22.80 2.25 0.00 2.90
1228 1273 2.280628 AGGAGCATAACGTTAGCAAGC 58.719 47.619 22.80 18.43 0.00 4.01
1230 1275 2.737359 CGGAGGAGCATAACGTTAGCAA 60.737 50.000 22.80 2.31 0.00 3.91
1377 1422 4.154195 ACTGATTGACTTGAAACGGCATAC 59.846 41.667 0.00 0.00 0.00 2.39
1378 1423 4.323417 ACTGATTGACTTGAAACGGCATA 58.677 39.130 0.00 0.00 0.00 3.14
1379 1424 3.149196 ACTGATTGACTTGAAACGGCAT 58.851 40.909 0.00 0.00 0.00 4.40
1380 1425 2.571212 ACTGATTGACTTGAAACGGCA 58.429 42.857 0.00 0.00 0.00 5.69
1381 1426 3.626028 AACTGATTGACTTGAAACGGC 57.374 42.857 0.00 0.00 0.00 5.68
1382 1427 4.920376 ACAAACTGATTGACTTGAAACGG 58.080 39.130 4.58 0.00 41.85 4.44
1383 1428 5.568482 TGACAAACTGATTGACTTGAAACG 58.432 37.500 4.58 0.00 41.85 3.60
1384 1429 6.974622 ACATGACAAACTGATTGACTTGAAAC 59.025 34.615 17.13 0.00 41.85 2.78
1385 1430 7.099266 ACATGACAAACTGATTGACTTGAAA 57.901 32.000 17.13 0.00 41.85 2.69
1386 1431 6.698008 ACATGACAAACTGATTGACTTGAA 57.302 33.333 17.13 0.00 41.85 2.69
1387 1432 7.800155 TTACATGACAAACTGATTGACTTGA 57.200 32.000 17.13 4.68 41.85 3.02
1400 1445 6.349777 GGATTTCCGGAACATTACATGACAAA 60.350 38.462 18.64 0.00 0.00 2.83
1450 1495 6.342111 ACTTGATAGCTGTTCCTAAACTAGC 58.658 40.000 0.00 0.00 38.61 3.42
1519 1564 5.988561 GTCTAGCTCTGAAAGGATGTATTGG 59.011 44.000 0.00 0.00 0.00 3.16
1657 1706 1.538047 TGGGCATTGAGAGCTTGAAC 58.462 50.000 0.00 0.00 0.00 3.18
1768 1852 0.886563 GCAGCAGACAAAGCAGGAAT 59.113 50.000 0.00 0.00 0.00 3.01
2076 2184 3.883830 TGAGAGAGACAAGGATTCTGC 57.116 47.619 0.00 0.00 0.00 4.26
2133 2242 5.235831 GTCCTTGTACACCTACAAAGTTGAC 59.764 44.000 0.00 0.00 41.40 3.18
2154 2263 1.592223 CTCGACCACCTTCCTGTCC 59.408 63.158 0.00 0.00 0.00 4.02
2274 2383 0.105194 TGGAGAATATGAGGGGCGGA 60.105 55.000 0.00 0.00 0.00 5.54
2305 2414 8.028540 TGTCGATATTATTATTGCACCATCAC 57.971 34.615 0.00 0.00 0.00 3.06
2492 2602 8.668353 TGCATTGTCTTCTGTAAGATGAATTAC 58.332 33.333 0.00 0.00 46.92 1.89
2550 3606 1.517242 CCTGCTTGGAACACAGAGAC 58.483 55.000 0.00 0.00 39.29 3.36
2607 3663 2.161486 GCTCAGTGTGCGGTCGATC 61.161 63.158 0.73 0.00 0.00 3.69
2647 3703 7.975750 GTTGTCAAGTTCAACTAAGACTTTCT 58.024 34.615 18.67 0.00 41.04 2.52
2658 3716 6.619801 ATGGAGTTAGTTGTCAAGTTCAAC 57.380 37.500 0.00 0.00 43.51 3.18
3040 4098 2.758089 CCAGGACAAGAGCATGCGC 61.758 63.158 14.17 14.17 38.99 6.09
3041 4099 2.110967 CCCAGGACAAGAGCATGCG 61.111 63.158 13.01 0.00 0.00 4.73
3042 4100 2.413142 GCCCAGGACAAGAGCATGC 61.413 63.158 10.51 10.51 0.00 4.06
3043 4101 0.543277 TAGCCCAGGACAAGAGCATG 59.457 55.000 0.00 0.00 0.00 4.06
3044 4102 0.835941 CTAGCCCAGGACAAGAGCAT 59.164 55.000 0.00 0.00 0.00 3.79
3086 4148 7.383572 GTCACATCACACCTAATATCATGACTC 59.616 40.741 0.00 0.00 31.18 3.36
3107 4169 0.537828 ATGCCATGCACACAGTCACA 60.538 50.000 0.00 0.00 43.04 3.58
3108 4170 0.109458 CATGCCATGCACACAGTCAC 60.109 55.000 0.00 0.00 43.04 3.67
3109 4171 2.259281 CATGCCATGCACACAGTCA 58.741 52.632 0.00 0.00 43.04 3.41
3367 4429 3.072330 TGGGAACACACACACAGATATGT 59.928 43.478 0.00 0.00 33.40 2.29
3368 4430 3.673902 TGGGAACACACACACAGATATG 58.326 45.455 0.00 0.00 33.40 1.78
3386 4533 2.023673 TCACAGCACTTTGAAGTTGGG 58.976 47.619 0.00 0.00 37.08 4.12
3476 4624 7.678690 GCCTTGCACGTAATGTACTTAATTCAT 60.679 37.037 0.00 0.00 0.00 2.57
3502 4650 4.335082 TCGTTGGATAAATGCAAACTCG 57.665 40.909 0.00 0.00 39.82 4.18
3512 4660 7.599998 GGTAGAGTAACTTGTTCGTTGGATAAA 59.400 37.037 0.00 0.00 0.00 1.40
3550 4698 8.196378 ACTAGTTAGTTTCTTGGAGATCAACT 57.804 34.615 0.00 0.00 32.06 3.16
3590 4738 9.811995 AAGACACAATATACACGTACACAATAT 57.188 29.630 0.00 0.00 0.00 1.28
3591 4739 9.078753 CAAGACACAATATACACGTACACAATA 57.921 33.333 0.00 0.00 0.00 1.90
3592 4740 7.064134 CCAAGACACAATATACACGTACACAAT 59.936 37.037 0.00 0.00 0.00 2.71
3593 4741 6.366604 CCAAGACACAATATACACGTACACAA 59.633 38.462 0.00 0.00 0.00 3.33
3594 4742 5.865013 CCAAGACACAATATACACGTACACA 59.135 40.000 0.00 0.00 0.00 3.72
3595 4743 5.290158 CCCAAGACACAATATACACGTACAC 59.710 44.000 0.00 0.00 0.00 2.90
3596 4744 5.412640 CCCAAGACACAATATACACGTACA 58.587 41.667 0.00 0.00 0.00 2.90
3597 4745 4.269363 GCCCAAGACACAATATACACGTAC 59.731 45.833 0.00 0.00 0.00 3.67
3598 4746 4.435425 GCCCAAGACACAATATACACGTA 58.565 43.478 0.00 0.00 0.00 3.57
3599 4747 3.267483 GCCCAAGACACAATATACACGT 58.733 45.455 0.00 0.00 0.00 4.49
3600 4748 2.612212 GGCCCAAGACACAATATACACG 59.388 50.000 0.00 0.00 0.00 4.49
3601 4749 2.949644 GGGCCCAAGACACAATATACAC 59.050 50.000 19.95 0.00 0.00 2.90
3602 4750 2.578480 TGGGCCCAAGACACAATATACA 59.422 45.455 26.33 0.00 0.00 2.29
3603 4751 2.949644 GTGGGCCCAAGACACAATATAC 59.050 50.000 30.64 5.00 35.30 1.47
3604 4752 2.092103 GGTGGGCCCAAGACACAATATA 60.092 50.000 30.64 0.00 36.87 0.86
3605 4753 1.341976 GGTGGGCCCAAGACACAATAT 60.342 52.381 30.64 0.00 36.87 1.28
3606 4754 0.039035 GGTGGGCCCAAGACACAATA 59.961 55.000 30.64 0.00 36.87 1.90
3607 4755 1.228862 GGTGGGCCCAAGACACAAT 60.229 57.895 30.64 0.00 36.87 2.71
3608 4756 2.197324 GGTGGGCCCAAGACACAA 59.803 61.111 30.64 0.00 36.87 3.33
3609 4757 2.776526 AGGTGGGCCCAAGACACA 60.777 61.111 30.64 0.00 36.87 3.72
3610 4758 2.034221 GAGGTGGGCCCAAGACAC 59.966 66.667 30.64 14.31 34.66 3.67
3611 4759 2.409984 TAGGAGGTGGGCCCAAGACA 62.410 60.000 30.64 7.04 34.66 3.41
3612 4760 1.615424 TAGGAGGTGGGCCCAAGAC 60.615 63.158 30.64 20.31 34.66 3.01
3613 4761 1.306997 CTAGGAGGTGGGCCCAAGA 60.307 63.158 30.64 0.00 34.66 3.02
3614 4762 1.208165 AACTAGGAGGTGGGCCCAAG 61.208 60.000 30.64 22.07 34.66 3.61
3615 4763 0.774491 AAACTAGGAGGTGGGCCCAA 60.774 55.000 30.64 9.14 34.66 4.12
3616 4764 0.119561 TAAACTAGGAGGTGGGCCCA 59.880 55.000 24.45 24.45 34.66 5.36
3617 4765 1.420514 GATAAACTAGGAGGTGGGCCC 59.579 57.143 17.59 17.59 34.57 5.80
3618 4766 2.104963 CAGATAAACTAGGAGGTGGGCC 59.895 54.545 0.00 0.00 0.00 5.80
3619 4767 2.772515 ACAGATAAACTAGGAGGTGGGC 59.227 50.000 0.00 0.00 0.00 5.36
3620 4768 7.011382 ACTATACAGATAAACTAGGAGGTGGG 58.989 42.308 0.00 0.00 0.00 4.61
3621 4769 8.361139 CAACTATACAGATAAACTAGGAGGTGG 58.639 40.741 0.00 0.00 0.00 4.61
3622 4770 9.132923 TCAACTATACAGATAAACTAGGAGGTG 57.867 37.037 0.00 0.00 0.00 4.00
3623 4771 9.710818 TTCAACTATACAGATAAACTAGGAGGT 57.289 33.333 0.00 0.00 0.00 3.85
3630 4778 9.436957 CCACAACTTCAACTATACAGATAAACT 57.563 33.333 0.00 0.00 0.00 2.66
3631 4779 8.175716 GCCACAACTTCAACTATACAGATAAAC 58.824 37.037 0.00 0.00 0.00 2.01
3632 4780 7.335924 GGCCACAACTTCAACTATACAGATAAA 59.664 37.037 0.00 0.00 0.00 1.40
3633 4781 6.821665 GGCCACAACTTCAACTATACAGATAA 59.178 38.462 0.00 0.00 0.00 1.75
3634 4782 6.346096 GGCCACAACTTCAACTATACAGATA 58.654 40.000 0.00 0.00 0.00 1.98
3635 4783 5.186198 GGCCACAACTTCAACTATACAGAT 58.814 41.667 0.00 0.00 0.00 2.90
3636 4784 4.564821 GGGCCACAACTTCAACTATACAGA 60.565 45.833 4.39 0.00 0.00 3.41
3637 4785 3.689649 GGGCCACAACTTCAACTATACAG 59.310 47.826 4.39 0.00 0.00 2.74
3638 4786 3.329520 AGGGCCACAACTTCAACTATACA 59.670 43.478 6.18 0.00 0.00 2.29
3639 4787 3.939592 GAGGGCCACAACTTCAACTATAC 59.060 47.826 6.18 0.00 0.00 1.47
3640 4788 3.054655 GGAGGGCCACAACTTCAACTATA 60.055 47.826 6.18 0.00 0.00 1.31
3641 4789 2.290960 GGAGGGCCACAACTTCAACTAT 60.291 50.000 6.18 0.00 0.00 2.12
3642 4790 1.073284 GGAGGGCCACAACTTCAACTA 59.927 52.381 6.18 0.00 0.00 2.24
3643 4791 0.178990 GGAGGGCCACAACTTCAACT 60.179 55.000 6.18 0.00 0.00 3.16
3644 4792 0.178990 AGGAGGGCCACAACTTCAAC 60.179 55.000 6.18 0.00 36.29 3.18
3645 4793 0.110486 GAGGAGGGCCACAACTTCAA 59.890 55.000 6.18 0.00 36.29 2.69
3646 4794 0.768221 AGAGGAGGGCCACAACTTCA 60.768 55.000 6.18 0.00 36.29 3.02
3647 4795 0.322008 CAGAGGAGGGCCACAACTTC 60.322 60.000 6.18 0.07 36.29 3.01
3648 4796 1.062488 ACAGAGGAGGGCCACAACTT 61.062 55.000 6.18 0.00 36.29 2.66
3649 4797 0.178903 TACAGAGGAGGGCCACAACT 60.179 55.000 6.18 0.00 36.29 3.16
3650 4798 0.036294 GTACAGAGGAGGGCCACAAC 60.036 60.000 6.18 0.00 36.29 3.32
3651 4799 0.472925 TGTACAGAGGAGGGCCACAA 60.473 55.000 6.18 0.00 36.29 3.33
3652 4800 0.252696 ATGTACAGAGGAGGGCCACA 60.253 55.000 6.18 0.00 36.29 4.17
3653 4801 0.466124 GATGTACAGAGGAGGGCCAC 59.534 60.000 6.18 0.00 36.29 5.01
3654 4802 0.042581 TGATGTACAGAGGAGGGCCA 59.957 55.000 6.18 0.00 36.29 5.36
3655 4803 1.428869 ATGATGTACAGAGGAGGGCC 58.571 55.000 0.33 0.00 0.00 5.80
3656 4804 6.238786 CGTATATATGATGTACAGAGGAGGGC 60.239 46.154 0.33 0.00 0.00 5.19
3657 4805 6.829298 ACGTATATATGATGTACAGAGGAGGG 59.171 42.308 8.98 0.00 0.00 4.30
3658 4806 7.679875 GCACGTATATATGATGTACAGAGGAGG 60.680 44.444 8.98 0.00 0.00 4.30
3659 4807 7.190191 GCACGTATATATGATGTACAGAGGAG 58.810 42.308 8.98 0.00 0.00 3.69
3660 4808 6.095021 GGCACGTATATATGATGTACAGAGGA 59.905 42.308 8.98 0.00 0.00 3.71
3661 4809 6.095580 AGGCACGTATATATGATGTACAGAGG 59.904 42.308 8.98 0.00 0.00 3.69
3662 4810 6.969473 CAGGCACGTATATATGATGTACAGAG 59.031 42.308 8.98 0.00 0.00 3.35
3663 4811 6.127730 CCAGGCACGTATATATGATGTACAGA 60.128 42.308 8.98 0.00 0.00 3.41
3664 4812 6.036470 CCAGGCACGTATATATGATGTACAG 58.964 44.000 8.98 0.00 0.00 2.74
3665 4813 5.479027 ACCAGGCACGTATATATGATGTACA 59.521 40.000 8.98 0.00 0.00 2.90
3666 4814 5.805486 CACCAGGCACGTATATATGATGTAC 59.195 44.000 8.98 0.00 0.00 2.90
3667 4815 5.623596 GCACCAGGCACGTATATATGATGTA 60.624 44.000 8.98 0.00 43.97 2.29
3668 4816 4.820897 CACCAGGCACGTATATATGATGT 58.179 43.478 8.98 0.00 0.00 3.06
3669 4817 3.618594 GCACCAGGCACGTATATATGATG 59.381 47.826 8.98 4.92 43.97 3.07
3670 4818 3.861840 GCACCAGGCACGTATATATGAT 58.138 45.455 8.98 0.00 43.97 2.45
3671 4819 3.313012 GCACCAGGCACGTATATATGA 57.687 47.619 8.98 0.00 43.97 2.15
3683 4831 1.750399 ATTGATCGGTGCACCAGGC 60.750 57.895 34.16 21.79 45.13 4.85
3684 4832 1.996786 GCATTGATCGGTGCACCAGG 61.997 60.000 34.16 19.77 40.94 4.45
3685 4833 1.307355 TGCATTGATCGGTGCACCAG 61.307 55.000 34.16 25.45 45.60 4.00
3686 4834 1.303155 TGCATTGATCGGTGCACCA 60.303 52.632 34.16 21.66 45.60 4.17
3687 4835 3.589579 TGCATTGATCGGTGCACC 58.410 55.556 26.78 26.78 45.60 5.01
3690 4838 1.921887 CACAATTGCATTGATCGGTGC 59.078 47.619 5.05 13.48 42.83 5.01
3691 4839 3.220507 ACACAATTGCATTGATCGGTG 57.779 42.857 5.05 7.60 42.83 4.94
3692 4840 3.577667 CAACACAATTGCATTGATCGGT 58.422 40.909 14.28 5.65 42.83 4.69
3693 4841 2.346244 GCAACACAATTGCATTGATCGG 59.654 45.455 20.80 1.01 44.34 4.18
3694 4842 3.628053 GCAACACAATTGCATTGATCG 57.372 42.857 20.80 3.53 44.34 3.69
3706 4854 0.829333 ATTTGGGCTGTGCAACACAA 59.171 45.000 1.64 0.00 45.67 3.33
3708 4856 1.219646 CAATTTGGGCTGTGCAACAC 58.780 50.000 0.00 0.00 45.67 3.32
3711 4859 1.950828 CAACAATTTGGGCTGTGCAA 58.049 45.000 0.78 0.00 0.00 4.08
3721 4869 7.111247 TCTAGGGCATATTTCCAACAATTTG 57.889 36.000 0.00 0.00 0.00 2.32
3837 4987 5.142061 TGTGGTCTACGTATTCACACATT 57.858 39.130 16.52 0.00 34.01 2.71
3850 5000 2.615493 CCAGGGACATGTTGTGGTCTAC 60.615 54.545 0.00 0.00 34.49 2.59
3870 5020 2.100087 GCTAGTCAACTAGAGGCTCACC 59.900 54.545 18.26 0.00 46.80 4.02
3919 5069 4.305539 ACATTCAATGTCCATGGTCAGA 57.694 40.909 16.79 7.25 39.92 3.27
4173 5331 1.361668 CTCGATTCGTGCCAACCCAG 61.362 60.000 5.89 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.