AutoCloner

Multiple sequence alignment - TraesCS2D01G251500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G251500	chr2D	100.000	2237	0	0	1	2237	300890614	300888378	0.000000e+00	4132.0
1	TraesCS2D01G251500	chr2D	81.203	266	35	13	379	630	19215848	19216112	1.350000e-47	200.0
2	TraesCS2D01G251500	chr2D	79.605	304	43	11	109	403	570130124	570130417	1.350000e-47	200.0
3	TraesCS2D01G251500	chr2D	86.111	108	11	4	321	426	33581732	33581837	1.820000e-21	113.0
4	TraesCS2D01G251500	chr2A	90.627	1835	86	28	103	1885	377137413	377135613	0.000000e+00	2357.0
5	TraesCS2D01G251500	chr2A	95.902	366	3	2	1883	2237	377135517	377135153	1.150000e-162	582.0
6	TraesCS2D01G251500	chr2B	93.097	1521	21	13	775	2237	358774981	358773487	0.000000e+00	2150.0
7	TraesCS2D01G251500	chr2B	77.910	335	48	15	103	426	120246547	120246866	3.790000e-43	185.0
8	TraesCS2D01G251500	chr2B	89.773	88	9	0	2	89	637784541	637784454	1.820000e-21	113.0
9	TraesCS2D01G251500	chrUn	77.316	626	84	35	103	686	331160580	331161189	1.290000e-82	316.0
10	TraesCS2D01G251500	chrUn	77.702	583	77	31	141	686	33334542	33333976	7.760000e-80	307.0
11	TraesCS2D01G251500	chr5D	77.819	541	76	26	113	629	446551141	446550621	6.040000e-76	294.0
12	TraesCS2D01G251500	chr5D	78.042	378	58	14	249	622	373204315	373203959	4.840000e-52	215.0
13	TraesCS2D01G251500	chr5D	87.640	89	9	2	1	87	486014346	486014258	3.930000e-18	102.0
14	TraesCS2D01G251500	chr7A	77.431	545	85	25	114	633	134623569	134623038	7.820000e-75	291.0
15	TraesCS2D01G251500	chr7A	76.364	550	80	25	114	635	664148145	664148672	1.330000e-62	250.0
16	TraesCS2D01G251500	chr7A	77.429	319	51	15	113	426	731153817	731154119	1.060000e-38	171.0
17	TraesCS2D01G251500	chr7A	86.139	101	13	1	6	106	636881009	636881108	8.450000e-20	108.0
18	TraesCS2D01G251500	chr5B	78.346	508	68	24	131	623	388981779	388981299	7.820000e-75	291.0
19	TraesCS2D01G251500	chr6A	77.331	547	77	26	103	633	7544525	7544010	1.690000e-71	279.0
20	TraesCS2D01G251500	chr3A	76.000	550	80	25	114	629	714559116	714559647	1.030000e-58	237.0
21	TraesCS2D01G251500	chr3A	85.000	100	14	1	7	105	742012539	742012638	1.410000e-17	100.0
22	TraesCS2D01G251500	chr3D	77.895	380	55	14	271	633	105464943	105464576	2.250000e-50	209.0
23	TraesCS2D01G251500	chr3D	79.217	332	43	16	103	426	579577246	579577559	8.100000e-50	207.0
24	TraesCS2D01G251500	chr3D	79.801	302	37	16	103	398	597863250	597862967	4.870000e-47	198.0
25	TraesCS2D01G251500	chr3D	74.813	536	76	35	103	622	13596920	13597412	1.050000e-43	187.0
26	TraesCS2D01G251500	chr7D	80.702	285	40	8	141	421	139869133	139868860	8.100000e-50	207.0
27	TraesCS2D01G251500	chr7D	88.636	88	10	0	2	89	580000343	580000430	8.450000e-20	108.0
28	TraesCS2D01G251500	chr1B	75.391	512	83	27	141	633	634157727	634157240	8.100000e-50	207.0
29	TraesCS2D01G251500	chr1B	80.645	155	21	6	272	425	22716121	22716267	6.530000e-21	111.0
30	TraesCS2D01G251500	chr1B	80.822	146	16	3	266	411	481870633	481870766	1.090000e-18	104.0
31	TraesCS2D01G251500	chr1A	78.683	319	47	6	109	426	390895025	390895323	2.270000e-45	193.0
32	TraesCS2D01G251500	chr4D	87.879	99	10	2	6	104	53790501	53790597	5.050000e-22	115.0
33	TraesCS2D01G251500	chr4D	86.598	97	10	3	9	104	426219890	426219984	1.090000e-18	104.0
34	TraesCS2D01G251500	chr1D	77.833	203	30	8	218	418	467241219	467241408	6.530000e-21	111.0
35	TraesCS2D01G251500	chr6D	88.372	86	9	1	19	103	448560028	448559943	3.930000e-18	102.0
36	TraesCS2D01G251500	chr3B	86.316	95	8	4	11	103	8858281	8858190	5.080000e-17	99.0
37	TraesCS2D01G251500	chr5A	83.019	106	11	6	321	426	44606867	44606965	3.060000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G251500	chr2D	300888378	300890614	2236	True	4132.0	4132	100.0000	1	2237	1	chr2D.!!$R1	2236
1	TraesCS2D01G251500	chr2A	377135153	377137413	2260	True	1469.5	2357	93.2645	103	2237	2	chr2A.!!$R1	2134
2	TraesCS2D01G251500	chr2B	358773487	358774981	1494	True	2150.0	2150	93.0970	775	2237	1	chr2B.!!$R1	1462
3	TraesCS2D01G251500	chrUn	331160580	331161189	609	False	316.0	316	77.3160	103	686	1	chrUn.!!$F1	583
4	TraesCS2D01G251500	chrUn	33333976	33334542	566	True	307.0	307	77.7020	141	686	1	chrUn.!!$R1	545
5	TraesCS2D01G251500	chr5D	446550621	446551141	520	True	294.0	294	77.8190	113	629	1	chr5D.!!$R2	516
6	TraesCS2D01G251500	chr7A	134623038	134623569	531	True	291.0	291	77.4310	114	633	1	chr7A.!!$R1	519
7	TraesCS2D01G251500	chr7A	664148145	664148672	527	False	250.0	250	76.3640	114	635	1	chr7A.!!$F2	521
8	TraesCS2D01G251500	chr6A	7544010	7544525	515	True	279.0	279	77.3310	103	633	1	chr6A.!!$R1	530
9	TraesCS2D01G251500	chr3A	714559116	714559647	531	False	237.0	237	76.0000	114	629	1	chr3A.!!$F1	515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
27	28	0.10412	AAAGGCACGGTTTTGCTTCC	59.896	50.0	0.0	0.0	42.56	3.46	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1753	1873	1.817447	GTAAGCTCTCAGGTGTACGGT	59.183	52.381	0.0	0.0	0.0	4.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	3.916439	GCGAAAGGCACGGTTTTG	58.084	55.556	0.00	0.00	42.87	2.44
23	24	2.300066	GCGAAAGGCACGGTTTTGC	61.300	57.895	0.00	0.00	42.87	3.68
24	25	1.358759	CGAAAGGCACGGTTTTGCT	59.641	52.632	0.00	0.00	42.56	3.91
25	26	0.248866	CGAAAGGCACGGTTTTGCTT	60.249	50.000	0.00	0.00	42.56	3.91
26	27	1.487482	GAAAGGCACGGTTTTGCTTC	58.513	50.000	0.00	0.00	42.56	3.86
27	28	0.104120	AAAGGCACGGTTTTGCTTCC	59.896	50.000	0.00	0.00	42.56	3.46
33	34	2.612200	CGGTTTTGCTTCCGTGAGA	58.388	52.632	0.00	0.00	41.58	3.27
34	35	0.941542	CGGTTTTGCTTCCGTGAGAA	59.058	50.000	0.00	0.00	41.58	2.87
46	47	6.095947	CTTCCGTGAGAAGCATAGTTTTAC	57.904	41.667	0.00	0.00	45.38	2.01
47	48	5.401531	TCCGTGAGAAGCATAGTTTTACT	57.598	39.130	0.00	0.00	0.00	2.24
48	49	5.790593	TCCGTGAGAAGCATAGTTTTACTT	58.209	37.500	0.00	0.00	0.00	2.24
49	50	5.867716	TCCGTGAGAAGCATAGTTTTACTTC	59.132	40.000	0.00	0.00	39.03	3.01
50	51	5.063564	CCGTGAGAAGCATAGTTTTACTTCC	59.936	44.000	0.00	0.00	39.46	3.46
51	52	5.220228	CGTGAGAAGCATAGTTTTACTTCCG	60.220	44.000	0.00	0.00	39.46	4.30
52	53	4.630069	TGAGAAGCATAGTTTTACTTCCGC	59.370	41.667	0.00	0.00	39.46	5.54
53	54	3.617263	AGAAGCATAGTTTTACTTCCGCG	59.383	43.478	0.00	0.00	39.46	6.46
54	55	3.241067	AGCATAGTTTTACTTCCGCGA	57.759	42.857	8.23	0.00	0.00	5.87
55	56	3.187700	AGCATAGTTTTACTTCCGCGAG	58.812	45.455	8.23	0.00	0.00	5.03
56	57	3.119245	AGCATAGTTTTACTTCCGCGAGA	60.119	43.478	8.23	0.00	0.00	4.04
57	58	3.243177	GCATAGTTTTACTTCCGCGAGAG	59.757	47.826	8.23	7.50	0.00	3.20
58	59	2.365408	AGTTTTACTTCCGCGAGAGG	57.635	50.000	8.23	6.41	0.00	3.69
59	60	0.720027	GTTTTACTTCCGCGAGAGGC	59.280	55.000	8.23	0.00	38.69	4.70
60	61	0.319083	TTTTACTTCCGCGAGAGGCA	59.681	50.000	8.23	0.00	43.84	4.75
61	62	0.389426	TTTACTTCCGCGAGAGGCAC	60.389	55.000	8.23	0.00	43.84	5.01
62	63	2.537792	TTACTTCCGCGAGAGGCACG	62.538	60.000	8.23	0.00	43.84	5.34
79	80	2.347490	GGCCGTGCCTCTCAGAAA	59.653	61.111	7.58	0.00	46.69	2.52
80	81	2.035442	GGCCGTGCCTCTCAGAAAC	61.035	63.158	7.58	0.00	46.69	2.78
81	82	2.383527	GCCGTGCCTCTCAGAAACG	61.384	63.158	0.00	0.00	0.00	3.60
82	83	1.289066	CCGTGCCTCTCAGAAACGA	59.711	57.895	5.92	0.00	36.38	3.85
83	84	0.319555	CCGTGCCTCTCAGAAACGAA	60.320	55.000	5.92	0.00	36.38	3.85
84	85	1.497991	CGTGCCTCTCAGAAACGAAA	58.502	50.000	0.00	0.00	36.38	3.46
85	86	1.864711	CGTGCCTCTCAGAAACGAAAA	59.135	47.619	0.00	0.00	36.38	2.29
86	87	2.286833	CGTGCCTCTCAGAAACGAAAAA	59.713	45.455	0.00	0.00	36.38	1.94
180	189	0.537143	ACGAGAGGCATGGTTTTGCA	60.537	50.000	0.00	0.00	44.59	4.08
183	192	2.620115	CGAGAGGCATGGTTTTGCATAT	59.380	45.455	0.00	0.00	44.59	1.78
233	244	6.237728	GGAAACGACAAAAACATGTTTTCTCC	60.238	38.462	31.10	22.42	41.45	3.71
327	341	2.266554	GTGCATCTCGAAACCTCTCAG	58.733	52.381	0.00	0.00	0.00	3.35
332	346	3.284323	TCTCGAAACCTCTCAGAAACG	57.716	47.619	0.00	0.00	0.00	3.60
405	421	2.861006	GCGAGAGGCACGGTTTTC	59.139	61.111	0.00	0.00	42.87	2.29
421	437	2.107041	TTTCCTTCCGCGAGAGGCAA	62.107	55.000	19.15	13.76	43.84	4.52
429	476	3.028366	GCGAGAGGCAACGGCTTTC	62.028	63.158	0.00	0.00	46.39	2.62
453	503	2.341846	AAGAAAAGGAACGTGCTCCA	57.658	45.000	8.93	0.00	38.02	3.86
461	511	4.988716	ACGTGCTCCAGGTCCGGA	62.989	66.667	0.00	0.00	0.00	5.14
462	512	3.691342	CGTGCTCCAGGTCCGGAA	61.691	66.667	5.23	0.00	33.65	4.30
635	706	9.561270	GAATCTAGGAAAAAGGAAAAATTCTCG	57.439	33.333	0.00	0.00	0.00	4.04
639	710	5.012046	AGGAAAAAGGAAAAATTCTCGCCAT	59.988	36.000	0.00	0.00	0.00	4.40
661	732	1.602605	TCGCGACCTGAGAAGGTGA	60.603	57.895	3.71	0.00	43.24	4.02
666	737	2.029290	GCGACCTGAGAAGGTGAAAGTA	60.029	50.000	1.25	0.00	43.24	2.24
674	745	7.147976	CCTGAGAAGGTGAAAGTAATTTTTGG	58.852	38.462	0.00	0.00	0.00	3.28
677	748	8.413229	TGAGAAGGTGAAAGTAATTTTTGGAAG	58.587	33.333	0.00	0.00	0.00	3.46
678	749	7.726216	AGAAGGTGAAAGTAATTTTTGGAAGG	58.274	34.615	0.00	0.00	0.00	3.46
698	778	3.258372	AGGAGTACTCTGATTTCGCACAA	59.742	43.478	21.88	0.00	0.00	3.33
714	794	1.511887	CAACAATTTCCGGCGCTCG	60.512	57.895	7.64	9.53	38.88	5.03
1251	1343	2.462456	TCTGATGCGTTTCTTGCTCT	57.538	45.000	0.00	0.00	0.00	4.09
1252	1344	2.341257	TCTGATGCGTTTCTTGCTCTC	58.659	47.619	0.00	0.00	0.00	3.20
1459	1552	2.267174	ATGCGATCCTGAATTCCTGG	57.733	50.000	2.27	5.65	35.40	4.45
1460	1553	0.464373	TGCGATCCTGAATTCCTGGC	60.464	55.000	2.27	0.00	34.22	4.85
1512	1605	7.102346	CAGATGATACCCTGATCTACATTTCC	58.898	42.308	0.00	0.00	32.37	3.13
1541	1634	3.861840	CATTTCAGTATGTCGTGGGAGT	58.138	45.455	0.00	0.00	37.40	3.85
1850	1971	4.523943	AGTAGTTGGCATTGCTGAAAATCA	59.476	37.500	8.82	0.00	0.00	2.57
1879	2000	7.797121	TCCAAATGAGATATGGCTGATAGTA	57.203	36.000	0.00	0.00	34.13	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	2.300066	GCAAAACCGTGCCTTTCGC	61.300	57.895	0.00	0.00	38.66	4.70
6	7	0.248866	AAGCAAAACCGTGCCTTTCG	60.249	50.000	0.00	0.00	46.14	3.46
7	8	1.487482	GAAGCAAAACCGTGCCTTTC	58.513	50.000	0.00	0.00	46.14	2.62
8	9	0.104120	GGAAGCAAAACCGTGCCTTT	59.896	50.000	0.00	0.00	46.14	3.11
9	10	1.739667	GGAAGCAAAACCGTGCCTT	59.260	52.632	0.00	0.00	46.14	4.35
10	11	2.551912	CGGAAGCAAAACCGTGCCT	61.552	57.895	0.00	0.00	46.14	4.75
11	12	2.050442	CGGAAGCAAAACCGTGCC	60.050	61.111	0.00	0.00	46.14	5.01
16	17	2.688364	CTTCTCACGGAAGCAAAACC	57.312	50.000	0.00	0.00	43.88	3.27
24	25	5.790593	AGTAAAACTATGCTTCTCACGGAA	58.209	37.500	0.00	0.00	0.00	4.30
25	26	5.401531	AGTAAAACTATGCTTCTCACGGA	57.598	39.130	0.00	0.00	0.00	4.69
26	27	5.063564	GGAAGTAAAACTATGCTTCTCACGG	59.936	44.000	5.38	0.00	37.89	4.94
27	28	5.220228	CGGAAGTAAAACTATGCTTCTCACG	60.220	44.000	5.38	0.00	37.89	4.35
28	29	5.446073	GCGGAAGTAAAACTATGCTTCTCAC	60.446	44.000	5.38	0.00	37.89	3.51
29	30	4.630069	GCGGAAGTAAAACTATGCTTCTCA	59.370	41.667	5.38	0.00	37.89	3.27
30	31	4.259850	CGCGGAAGTAAAACTATGCTTCTC	60.260	45.833	0.00	0.00	37.89	2.87
31	32	3.617263	CGCGGAAGTAAAACTATGCTTCT	59.383	43.478	0.00	0.00	37.89	2.85
32	33	3.615496	TCGCGGAAGTAAAACTATGCTTC	59.385	43.478	6.13	0.00	37.27	3.86
33	34	3.592059	TCGCGGAAGTAAAACTATGCTT	58.408	40.909	6.13	0.00	0.00	3.91
34	35	3.119245	TCTCGCGGAAGTAAAACTATGCT	60.119	43.478	6.13	0.00	0.00	3.79
35	36	3.184541	TCTCGCGGAAGTAAAACTATGC	58.815	45.455	6.13	0.00	0.00	3.14
36	37	3.797256	CCTCTCGCGGAAGTAAAACTATG	59.203	47.826	6.13	0.00	0.00	2.23
37	38	3.737355	GCCTCTCGCGGAAGTAAAACTAT	60.737	47.826	6.13	0.00	0.00	2.12
38	39	2.416431	GCCTCTCGCGGAAGTAAAACTA	60.416	50.000	6.13	0.00	0.00	2.24
39	40	1.672145	GCCTCTCGCGGAAGTAAAACT	60.672	52.381	6.13	0.00	0.00	2.66
40	41	0.720027	GCCTCTCGCGGAAGTAAAAC	59.280	55.000	6.13	0.00	0.00	2.43
41	42	0.319083	TGCCTCTCGCGGAAGTAAAA	59.681	50.000	6.13	0.00	42.08	1.52
42	43	0.389426	GTGCCTCTCGCGGAAGTAAA	60.389	55.000	6.13	0.00	42.08	2.01
43	44	1.214589	GTGCCTCTCGCGGAAGTAA	59.785	57.895	6.13	0.00	42.08	2.24
44	45	2.882876	GTGCCTCTCGCGGAAGTA	59.117	61.111	6.13	0.00	42.08	2.24
45	46	4.421479	CGTGCCTCTCGCGGAAGT	62.421	66.667	6.13	0.00	44.36	3.01
63	64	2.383527	CGTTTCTGAGAGGCACGGC	61.384	63.158	3.75	0.00	0.00	5.68
64	65	0.319555	TTCGTTTCTGAGAGGCACGG	60.320	55.000	9.92	0.00	0.00	4.94
65	66	1.497991	TTTCGTTTCTGAGAGGCACG	58.502	50.000	4.99	4.99	0.00	5.34
66	67	3.963383	TTTTTCGTTTCTGAGAGGCAC	57.037	42.857	0.00	0.00	0.00	5.01
180	189	0.385751	CGACCGTGCCTCTCACATAT	59.614	55.000	0.00	0.00	45.92	1.78
183	192	2.910479	ACGACCGTGCCTCTCACA	60.910	61.111	0.00	0.00	45.92	3.58
216	225	7.336679	AGGGAAAAAGGAGAAAACATGTTTTTG	59.663	33.333	31.42	0.00	42.26	2.44
363	379	4.978083	AGCAAAATTGTGCCTCTCATAG	57.022	40.909	17.19	0.00	46.14	2.23
364	380	4.158394	GGAAGCAAAATTGTGCCTCTCATA	59.842	41.667	17.19	0.00	46.14	2.15
365	381	3.056322	GGAAGCAAAATTGTGCCTCTCAT	60.056	43.478	17.19	0.00	46.14	2.90
366	382	2.297033	GGAAGCAAAATTGTGCCTCTCA	59.703	45.455	17.19	0.00	46.14	3.27
367	383	2.669391	CGGAAGCAAAATTGTGCCTCTC	60.669	50.000	17.19	11.02	46.14	3.20
368	384	1.270550	CGGAAGCAAAATTGTGCCTCT	59.729	47.619	17.19	2.01	46.14	3.69
369	385	1.701704	CGGAAGCAAAATTGTGCCTC	58.298	50.000	17.19	13.58	46.14	4.70
370	386	3.892200	CGGAAGCAAAATTGTGCCT	57.108	47.368	17.19	3.85	46.14	4.75
405	421	2.815647	GTTGCCTCTCGCGGAAGG	60.816	66.667	19.53	19.53	42.08	3.46
421	437	3.379057	TCCTTTTCTTTTTCGAAAGCCGT	59.621	39.130	10.98	0.00	39.75	5.68
429	476	3.691498	AGCACGTTCCTTTTCTTTTTCG	58.309	40.909	0.00	0.00	0.00	3.46
453	503	1.545841	GGAGCAAAAATTCCGGACCT	58.454	50.000	1.83	0.00	0.00	3.85
530	601	1.468565	CGTTAGATTCCTCGCGTCCAA	60.469	52.381	5.77	0.00	0.00	3.53
635	706	1.970917	CTCAGGTCGCGACAAATGGC	61.971	60.000	37.26	20.56	0.00	4.40
639	710	0.319555	CCTTCTCAGGTCGCGACAAA	60.320	55.000	37.26	21.68	35.06	2.83
661	732	9.067986	CAGAGTACTCCTTCCAAAAATTACTTT	57.932	33.333	19.38	0.00	0.00	2.66
666	737	8.712228	AAATCAGAGTACTCCTTCCAAAAATT	57.288	30.769	19.38	3.95	0.00	1.82
674	745	3.860536	GTGCGAAATCAGAGTACTCCTTC	59.139	47.826	19.38	14.69	0.00	3.46
677	748	3.232213	TGTGCGAAATCAGAGTACTCC	57.768	47.619	19.38	1.96	0.00	3.85
678	749	3.987868	TGTTGTGCGAAATCAGAGTACTC	59.012	43.478	15.41	15.41	0.00	2.59
698	778	2.047655	TCGAGCGCCGGAAATTGT	60.048	55.556	5.05	0.00	39.14	2.71
714	794	3.623510	GTGAAAGAAATCGATCTGGGGTC	59.376	47.826	0.00	0.00	0.00	4.46
763	844	3.365969	GGCCGTGGTATTTCTTGTTTGAG	60.366	47.826	0.00	0.00	0.00	3.02
986	1076	1.152963	CCCATCGGATCACAACCCC	60.153	63.158	0.00	0.00	0.00	4.95
1251	1343	2.354656	GTGCACTGACGACGCTGA	60.355	61.111	10.32	0.00	0.00	4.26
1252	1344	3.406361	GGTGCACTGACGACGCTG	61.406	66.667	17.98	0.00	0.00	5.18
1460	1553	3.870419	GCATAGAAAGCTGGAAGTCTCAG	59.130	47.826	0.00	0.00	35.30	3.35
1512	1605	4.201812	ACGACATACTGAAATGCCAATTCG	60.202	41.667	0.00	0.00	0.00	3.34
1541	1634	5.924254	CACAGATTTTACTCTTGACACCGTA	59.076	40.000	0.00	0.00	0.00	4.02
1753	1873	1.817447	GTAAGCTCTCAGGTGTACGGT	59.183	52.381	0.00	0.00	0.00	4.83
1850	1971	7.506361	TCAGCCATATCTCATTTGGATCTAT	57.494	36.000	0.00	0.00	33.78	1.98
1879	2000	8.289939	TGCAGTTAGCTAGTTAGTACTACAAT	57.710	34.615	0.91	0.00	45.94	2.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.