Multiple sequence alignment - TraesCS2D01G250700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G250700 chr2D 100.000 4723 0 0 1 4723 299523196 299527918 0.000000e+00 8722.0
1 TraesCS2D01G250700 chr2D 94.118 272 4 1 2070 2341 299525141 299525400 2.050000e-108 403.0
2 TraesCS2D01G250700 chr2D 94.118 272 4 1 1946 2205 299525265 299525536 2.050000e-108 403.0
3 TraesCS2D01G250700 chr2D 81.649 376 48 12 125 484 222600050 222599680 4.620000e-75 292.0
4 TraesCS2D01G250700 chr2D 79.420 379 59 10 123 484 558377766 558377390 2.820000e-62 250.0
5 TraesCS2D01G250700 chr2D 85.321 218 32 0 4500 4717 76755297 76755514 4.760000e-55 226.0
6 TraesCS2D01G250700 chr2D 88.235 136 4 1 2206 2341 299525141 299525264 8.190000e-33 152.0
7 TraesCS2D01G250700 chr2D 88.235 136 4 1 1946 2069 299525401 299525536 8.190000e-33 152.0
8 TraesCS2D01G250700 chr2D 88.235 68 6 2 4438 4504 299529009 299528943 3.920000e-11 80.5
9 TraesCS2D01G250700 chr2A 94.005 3353 89 20 683 3970 373867820 373871125 0.000000e+00 4975.0
10 TraesCS2D01G250700 chr2A 96.703 273 8 1 2070 2341 373869097 373869369 2.000000e-123 453.0
11 TraesCS2D01G250700 chr2A 92.279 272 9 1 1946 2205 373869234 373869505 4.460000e-100 375.0
12 TraesCS2D01G250700 chr2A 93.252 163 9 2 2 163 373867083 373867244 6.110000e-59 239.0
13 TraesCS2D01G250700 chr2A 97.080 137 3 1 2206 2341 373869097 373869233 3.680000e-56 230.0
14 TraesCS2D01G250700 chr2A 90.260 154 10 2 4048 4201 373871126 373871274 3.730000e-46 196.0
15 TraesCS2D01G250700 chr2A 86.029 136 7 1 1946 2069 373869370 373869505 8.240000e-28 135.0
16 TraesCS2D01G250700 chr2A 93.407 91 6 0 3967 4057 618975117 618975027 8.240000e-28 135.0
17 TraesCS2D01G250700 chr2B 95.330 1499 45 12 2475 3969 358673987 358672510 0.000000e+00 2357.0
18 TraesCS2D01G250700 chr2B 93.746 1519 43 17 803 2269 358675836 358674318 0.000000e+00 2231.0
19 TraesCS2D01G250700 chr2B 88.045 803 47 24 5 791 358679567 358678798 0.000000e+00 905.0
20 TraesCS2D01G250700 chr2B 87.574 507 35 6 4235 4720 141729454 141729953 3.190000e-156 562.0
21 TraesCS2D01G250700 chr2B 96.324 272 10 0 2070 2341 358674653 358674382 9.320000e-122 448.0
22 TraesCS2D01G250700 chr2B 95.429 175 8 0 2264 2438 358674145 358673971 3.600000e-71 279.0
23 TraesCS2D01G250700 chr2B 91.500 200 5 3 1946 2133 358674517 358674318 1.010000e-66 265.0
24 TraesCS2D01G250700 chr2B 85.973 221 29 2 4494 4714 54522795 54523013 7.900000e-58 235.0
25 TraesCS2D01G250700 chr2B 87.143 210 24 3 4508 4717 685936365 685936159 7.900000e-58 235.0
26 TraesCS2D01G250700 chr2B 96.324 136 5 0 2206 2341 358674653 358674518 1.710000e-54 224.0
27 TraesCS2D01G250700 chr2B 97.436 78 2 0 2128 2205 358674145 358674068 2.970000e-27 134.0
28 TraesCS2D01G250700 chr2B 90.000 100 8 2 3958 4057 752785552 752785455 1.380000e-25 128.0
29 TraesCS2D01G250700 chr2B 96.429 56 2 0 1946 2001 358674381 358674326 5.030000e-15 93.5
30 TraesCS2D01G250700 chr2B 91.304 69 3 2 4438 4504 141731047 141730980 1.810000e-14 91.6
31 TraesCS2D01G250700 chr2B 100.000 28 0 0 4200 4227 134424941 134424968 9.000000e-03 52.8
32 TraesCS2D01G250700 chr5B 93.726 526 25 2 4200 4723 669556084 669555565 0.000000e+00 782.0
33 TraesCS2D01G250700 chr5B 89.728 331 22 2 4404 4722 639119326 639119656 3.400000e-111 412.0
34 TraesCS2D01G250700 chr5B 95.812 191 8 0 4200 4390 639113658 639113848 4.590000e-80 309.0
35 TraesCS2D01G250700 chr5B 80.749 374 55 9 124 481 13222645 13223017 4.660000e-70 276.0
36 TraesCS2D01G250700 chr5B 88.235 68 6 2 4438 4504 669554470 669554536 3.920000e-11 80.5
37 TraesCS2D01G250700 chr7A 86.720 497 42 6 4230 4723 63798994 63798519 9.000000e-147 531.0
38 TraesCS2D01G250700 chr7A 90.000 100 7 2 3967 4066 186100324 186100228 4.960000e-25 126.0
39 TraesCS2D01G250700 chr7A 89.706 68 6 1 4438 4504 63797533 63797600 8.420000e-13 86.1
40 TraesCS2D01G250700 chr7A 100.000 34 0 0 4200 4233 138161881 138161914 3.950000e-06 63.9
41 TraesCS2D01G250700 chr5D 83.467 375 48 3 123 484 335658892 335659265 2.110000e-88 337.0
42 TraesCS2D01G250700 chr1D 81.714 350 25 20 4200 4514 59631498 59631843 6.070000e-64 255.0
43 TraesCS2D01G250700 chr1D 93.407 91 5 1 3961 4051 467803505 467803594 2.970000e-27 134.0
44 TraesCS2D01G250700 chr7B 79.570 372 51 9 123 473 115372021 115372388 4.720000e-60 243.0
45 TraesCS2D01G250700 chr7B 83.660 153 20 5 238 388 58641889 58641740 6.370000e-29 139.0
46 TraesCS2D01G250700 chr3B 79.088 373 53 10 123 481 399976399 399976038 2.840000e-57 233.0
47 TraesCS2D01G250700 chr3B 94.505 91 5 0 3967 4057 765013435 765013525 1.770000e-29 141.0
48 TraesCS2D01G250700 chr6D 84.793 217 32 1 4501 4717 5810604 5810819 2.860000e-52 217.0
49 TraesCS2D01G250700 chr4A 84.906 212 32 0 4506 4717 631375123 631374912 1.030000e-51 215.0
50 TraesCS2D01G250700 chr4A 94.624 93 4 1 3960 4052 189602171 189602262 4.930000e-30 143.0
51 TraesCS2D01G250700 chr4A 91.304 69 3 2 4438 4504 653084426 653084493 1.810000e-14 91.6
52 TraesCS2D01G250700 chr4A 90.000 50 4 1 1807 1856 108869570 108869618 3.950000e-06 63.9
53 TraesCS2D01G250700 chr7D 84.163 221 34 1 4497 4717 420899664 420899883 3.700000e-51 213.0
54 TraesCS2D01G250700 chr7D 74.194 310 60 16 4423 4720 11436356 11436657 1.390000e-20 111.0
55 TraesCS2D01G250700 chr6A 79.137 278 40 7 213 477 63098890 63099162 4.860000e-40 176.0
56 TraesCS2D01G250700 chr6A 93.407 91 5 1 3962 4052 581742876 581742965 2.970000e-27 134.0
57 TraesCS2D01G250700 chr3D 90.179 112 10 1 4195 4305 40806036 40805925 1.370000e-30 145.0
58 TraesCS2D01G250700 chr3D 90.000 70 7 0 4242 4311 593705492 593705561 1.810000e-14 91.6
59 TraesCS2D01G250700 chr4B 93.407 91 6 0 3963 4053 186479068 186479158 8.240000e-28 135.0
60 TraesCS2D01G250700 chr4B 94.382 89 4 1 3967 4054 599641886 599641798 8.240000e-28 135.0
61 TraesCS2D01G250700 chr5A 83.621 116 17 2 1193 1307 611547294 611547408 1.800000e-19 108.0
62 TraesCS2D01G250700 chr5A 97.872 47 1 0 1810 1856 423051541 423051587 1.090000e-11 82.4
63 TraesCS2D01G250700 chr1A 95.833 48 2 0 1809 1856 568391289 568391242 1.410000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G250700 chr2D 299523196 299527918 4722 False 1966.400000 8722 92.941200 1 4723 5 chr2D.!!$F2 4722
1 TraesCS2D01G250700 chr2A 373867083 373871274 4191 False 943.285714 4975 92.801143 2 4201 7 chr2A.!!$F1 4199
2 TraesCS2D01G250700 chr2B 358678798 358679567 769 True 905.000000 905 88.045000 5 791 1 chr2B.!!$R2 786
3 TraesCS2D01G250700 chr2B 358672510 358675836 3326 True 753.937500 2357 95.314750 803 3969 8 chr2B.!!$R5 3166
4 TraesCS2D01G250700 chr5B 669555565 669556084 519 True 782.000000 782 93.726000 4200 4723 1 chr5B.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 1012 0.038526 GAAGGTCGCTCTTTCGGTCA 60.039 55.0 0.00 0.00 0.00 4.02 F
1268 1815 0.397675 TGGAGATCGTGCCTGATCCT 60.398 55.0 10.67 0.97 44.74 3.24 F
1755 2338 0.607620 GCTTTAGCAAATGGGTGCCA 59.392 50.0 0.00 0.00 46.14 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2719 2.290323 ACTCTTGGTTCTGTACATGGGC 60.290 50.000 0.00 0.0 0.00 5.36 R
2780 3561 2.693074 TCAGTCGCCATATGCTGAACTA 59.307 45.455 7.94 0.0 35.36 2.24 R
3741 4529 0.506932 CACAAGTGTGTAGTTCCGCG 59.493 55.000 0.00 0.0 40.96 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.494059 CCTTTGCTTCTTCTTCGGACA 58.506 47.619 0.00 0.00 0.00 4.02
27 28 4.170256 GCTTCTTCTTCGGACAAGTAGAG 58.830 47.826 6.67 2.06 0.00 2.43
199 723 2.002586 GGTGACGATCAAGTGACATGG 58.997 52.381 0.00 0.00 29.74 3.66
222 746 5.243954 GGCTGGGAAAGATTAAGAAACAACT 59.756 40.000 0.00 0.00 0.00 3.16
225 749 9.174166 GCTGGGAAAGATTAAGAAACAACTATA 57.826 33.333 0.00 0.00 0.00 1.31
245 769 2.107950 TGAAGCTAAACGTGGATGGG 57.892 50.000 0.00 0.00 0.00 4.00
246 770 1.339631 TGAAGCTAAACGTGGATGGGG 60.340 52.381 0.00 0.00 0.00 4.96
272 796 2.105821 TGACCCACACTTACTCAAAGGG 59.894 50.000 0.00 0.00 44.86 3.95
298 822 2.492090 GCGCCGTCATCAGAGACT 59.508 61.111 0.00 0.00 36.38 3.24
304 828 3.489229 CGCCGTCATCAGAGACTTGAATA 60.489 47.826 0.00 0.00 36.38 1.75
313 837 5.586339 TCAGAGACTTGAATAGCAGATTCG 58.414 41.667 6.82 0.00 0.00 3.34
318 842 1.477105 TGAATAGCAGATTCGTCGCG 58.523 50.000 0.00 0.00 0.00 5.87
319 843 1.064952 TGAATAGCAGATTCGTCGCGA 59.935 47.619 3.71 3.71 0.00 5.87
320 844 2.287608 TGAATAGCAGATTCGTCGCGAT 60.288 45.455 14.06 0.00 35.23 4.58
328 852 4.681988 CAGATTCGTCGCGATAGAAAATG 58.318 43.478 25.84 22.43 35.23 2.32
329 853 3.736252 AGATTCGTCGCGATAGAAAATGG 59.264 43.478 25.84 4.92 35.23 3.16
330 854 2.855660 TCGTCGCGATAGAAAATGGA 57.144 45.000 14.06 0.00 39.76 3.41
334 858 3.180584 CGTCGCGATAGAAAATGGAGAAG 59.819 47.826 14.06 0.00 39.76 2.85
403 938 1.999648 TGGTAACTACAGTCGGGTGT 58.000 50.000 0.00 0.00 37.61 4.16
454 989 8.007405 TCATCGAGGTGATAGAGACAATAAAA 57.993 34.615 0.00 0.00 34.83 1.52
477 1012 0.038526 GAAGGTCGCTCTTTCGGTCA 60.039 55.000 0.00 0.00 0.00 4.02
486 1021 2.223203 GCTCTTTCGGTCAATCAGCATG 60.223 50.000 0.00 0.00 37.54 4.06
498 1033 1.655484 TCAGCATGTATCACCTTGCG 58.345 50.000 0.00 0.00 39.67 4.85
500 1035 2.167487 TCAGCATGTATCACCTTGCGTA 59.833 45.455 0.00 0.00 39.67 4.42
507 1042 4.765273 TGTATCACCTTGCGTATGATTGT 58.235 39.130 0.00 0.00 34.86 2.71
513 1048 4.009675 ACCTTGCGTATGATTGTCAACAT 58.990 39.130 0.00 0.00 0.00 2.71
532 1067 6.093357 TCAACATATTGTTTTCGAGCATGCTA 59.907 34.615 22.74 2.30 38.77 3.49
533 1068 6.624352 ACATATTGTTTTCGAGCATGCTAT 57.376 33.333 22.74 10.40 0.00 2.97
534 1069 7.728847 ACATATTGTTTTCGAGCATGCTATA 57.271 32.000 22.74 12.40 0.00 1.31
535 1070 8.153479 ACATATTGTTTTCGAGCATGCTATAA 57.847 30.769 22.74 15.00 0.00 0.98
536 1071 8.620416 ACATATTGTTTTCGAGCATGCTATAAA 58.380 29.630 22.74 19.99 0.00 1.40
537 1072 9.110617 CATATTGTTTTCGAGCATGCTATAAAG 57.889 33.333 22.74 10.02 0.00 1.85
538 1073 6.735678 TTGTTTTCGAGCATGCTATAAAGA 57.264 33.333 22.74 15.80 0.00 2.52
539 1074 6.349973 TGTTTTCGAGCATGCTATAAAGAG 57.650 37.500 22.74 6.42 0.00 2.85
540 1075 6.106003 TGTTTTCGAGCATGCTATAAAGAGA 58.894 36.000 22.74 8.67 0.00 3.10
541 1076 6.036083 TGTTTTCGAGCATGCTATAAAGAGAC 59.964 38.462 22.74 17.33 0.00 3.36
542 1077 5.521906 TTCGAGCATGCTATAAAGAGACT 57.478 39.130 22.74 0.00 0.00 3.24
543 1078 6.635030 TTCGAGCATGCTATAAAGAGACTA 57.365 37.500 22.74 0.00 0.00 2.59
544 1079 6.635030 TCGAGCATGCTATAAAGAGACTAA 57.365 37.500 22.74 0.00 0.00 2.24
545 1080 7.220741 TCGAGCATGCTATAAAGAGACTAAT 57.779 36.000 22.74 0.00 0.00 1.73
546 1081 7.661968 TCGAGCATGCTATAAAGAGACTAATT 58.338 34.615 22.74 0.00 0.00 1.40
547 1082 7.596621 TCGAGCATGCTATAAAGAGACTAATTG 59.403 37.037 22.74 0.00 0.00 2.32
548 1083 7.432350 AGCATGCTATAAAGAGACTAATTGC 57.568 36.000 21.21 0.00 0.00 3.56
549 1084 6.146837 AGCATGCTATAAAGAGACTAATTGCG 59.853 38.462 21.21 0.00 0.00 4.85
550 1085 5.907197 TGCTATAAAGAGACTAATTGCGC 57.093 39.130 0.00 0.00 0.00 6.09
551 1086 5.601662 TGCTATAAAGAGACTAATTGCGCT 58.398 37.500 9.73 0.00 0.00 5.92
562 1097 3.631686 ACTAATTGCGCTGCCATGATTTA 59.368 39.130 9.73 0.00 0.00 1.40
574 1109 3.851105 GCCATGATTTAGTTCGAGCATGC 60.851 47.826 10.51 10.51 33.62 4.06
577 1112 5.410746 CCATGATTTAGTTCGAGCATGCTAT 59.589 40.000 22.74 7.71 33.62 2.97
580 1115 8.663025 CATGATTTAGTTCGAGCATGCTATAAT 58.337 33.333 22.74 10.59 0.00 1.28
581 1116 8.021955 TGATTTAGTTCGAGCATGCTATAATG 57.978 34.615 22.74 8.54 0.00 1.90
619 1154 1.395635 TGCTGCCATGATTTAGCCAG 58.604 50.000 0.00 0.00 35.36 4.85
625 1160 3.711190 TGCCATGATTTAGCCAGACTAGA 59.289 43.478 0.00 0.00 30.79 2.43
641 1176 7.982354 GCCAGACTAGATAGAAATAAAGTGTGT 59.018 37.037 0.00 0.00 0.00 3.72
642 1177 9.307121 CCAGACTAGATAGAAATAAAGTGTGTG 57.693 37.037 0.00 0.00 0.00 3.82
648 1183 8.827177 AGATAGAAATAAAGTGTGTGAAACGA 57.173 30.769 0.00 0.00 42.39 3.85
663 1200 8.184848 TGTGTGAAACGAATGAAAAGATTGTTA 58.815 29.630 0.00 0.00 42.39 2.41
767 1305 4.317418 CGTGCTACAACTGCTTCGATAATC 60.317 45.833 0.00 0.00 33.45 1.75
892 1430 2.544267 CACGCGAGAAGAAGGAAAACTT 59.456 45.455 15.93 0.00 43.65 2.66
1268 1815 0.397675 TGGAGATCGTGCCTGATCCT 60.398 55.000 10.67 0.97 44.74 3.24
1343 1890 4.261197 CCTTTCTCTGGGCGTAATTTATGC 60.261 45.833 11.44 11.44 39.95 3.14
1514 2062 3.942748 GCGGTTATTGGGACATAGTTTCA 59.057 43.478 0.00 0.00 39.30 2.69
1628 2184 2.111384 TGATGGGTGAAGTCTCTAGCC 58.889 52.381 0.00 0.00 0.00 3.93
1755 2338 0.607620 GCTTTAGCAAATGGGTGCCA 59.392 50.000 0.00 0.00 46.14 4.92
1793 2377 8.874156 ACTTATATGATCCATTGCTGTTAGAGA 58.126 33.333 0.00 0.00 0.00 3.10
1819 2406 8.606830 ACTGTATTTCAGAAAATTACTCCCTCT 58.393 33.333 0.00 0.00 46.27 3.69
1827 2414 6.485984 CAGAAAATTACTCCCTCTGATCCATG 59.514 42.308 0.00 0.00 36.44 3.66
1835 2422 4.464008 TCCCTCTGATCCATGTTAATTGC 58.536 43.478 0.00 0.00 0.00 3.56
1863 2450 6.007703 TGATTTAGTACAAAGTTTGGAGGGG 58.992 40.000 19.45 0.00 34.12 4.79
2011 2614 8.061304 ACTATTTTCCCATGTATCCTTGACATT 58.939 33.333 0.00 0.00 35.31 2.71
2238 2841 6.592607 TGGCGATAATCTCTTAAAACTTCGTT 59.407 34.615 0.00 0.00 0.00 3.85
2313 3094 9.933240 ATTTCTCAAGGATGGAAGATTTCTTAT 57.067 29.630 0.00 0.00 36.11 1.73
2588 3369 8.080417 GTCATTTATCGCTGTACCAGAATAGTA 58.920 37.037 0.00 0.00 32.44 1.82
2651 3432 5.011738 AGGTAAGTTGCAGCTTTGAGTAGTA 59.988 40.000 21.36 0.00 0.00 1.82
2780 3561 6.698008 TCACATGTGAAAAGTGACTGATTT 57.302 33.333 26.02 0.00 37.36 2.17
2911 3693 3.264104 GGTCATGCCATTCAAACATTGG 58.736 45.455 1.78 0.00 37.17 3.16
2948 3730 0.676466 CCGCCAGTCATGCCAACTTA 60.676 55.000 0.00 0.00 0.00 2.24
3016 3798 6.265649 AGTCGTATGTGCTTCTTACTCCATAT 59.734 38.462 0.00 0.00 0.00 1.78
3101 3883 6.748198 CCTTTACTTTGAACTGCAAAAACGTA 59.252 34.615 0.00 0.00 45.26 3.57
3398 4183 0.679640 CCAATGCCCGGCAACTTCTA 60.680 55.000 18.00 0.00 43.62 2.10
3466 4253 4.377431 CCAGTAAGATTTCGTTCAGCACAC 60.377 45.833 0.00 0.00 0.00 3.82
3467 4254 4.211164 CAGTAAGATTTCGTTCAGCACACA 59.789 41.667 0.00 0.00 0.00 3.72
3516 4303 3.244665 TGCATATGCTCTCATTACTGGGG 60.245 47.826 27.13 0.00 42.66 4.96
3548 4335 3.021695 CAGGGCATGACAGATGTTCATT 58.978 45.455 0.00 0.00 0.00 2.57
3781 4569 7.786046 TGTGGATTGTAACTCTAGAAACCTA 57.214 36.000 0.00 0.00 27.98 3.08
3976 4764 9.892130 AAAATTCTGTATTAGTTACTCCCTCTG 57.108 33.333 0.00 0.00 0.00 3.35
3977 4765 8.611051 AATTCTGTATTAGTTACTCCCTCTGT 57.389 34.615 0.00 0.00 0.00 3.41
3978 4766 9.710818 AATTCTGTATTAGTTACTCCCTCTGTA 57.289 33.333 0.00 0.00 0.00 2.74
3979 4767 9.710818 ATTCTGTATTAGTTACTCCCTCTGTAA 57.289 33.333 0.00 0.00 0.00 2.41
3980 4768 9.537852 TTCTGTATTAGTTACTCCCTCTGTAAA 57.462 33.333 0.00 0.00 32.58 2.01
3981 4769 8.964772 TCTGTATTAGTTACTCCCTCTGTAAAC 58.035 37.037 0.00 0.00 32.58 2.01
3982 4770 8.890410 TGTATTAGTTACTCCCTCTGTAAACT 57.110 34.615 0.00 0.00 32.58 2.66
3983 4771 9.979897 TGTATTAGTTACTCCCTCTGTAAACTA 57.020 33.333 0.00 0.00 32.58 2.24
3988 4776 8.890410 AGTTACTCCCTCTGTAAACTAATACA 57.110 34.615 0.00 0.00 34.72 2.29
3989 4777 9.317827 AGTTACTCCCTCTGTAAACTAATACAA 57.682 33.333 0.00 0.00 35.48 2.41
3990 4778 9.583765 GTTACTCCCTCTGTAAACTAATACAAG 57.416 37.037 0.00 0.00 35.48 3.16
3991 4779 9.537852 TTACTCCCTCTGTAAACTAATACAAGA 57.462 33.333 0.00 0.00 35.48 3.02
3992 4780 8.611051 ACTCCCTCTGTAAACTAATACAAGAT 57.389 34.615 0.00 0.00 35.48 2.40
3993 4781 8.697292 ACTCCCTCTGTAAACTAATACAAGATC 58.303 37.037 0.00 0.00 35.48 2.75
3994 4782 8.603898 TCCCTCTGTAAACTAATACAAGATCA 57.396 34.615 0.00 0.00 35.48 2.92
3995 4783 9.213777 TCCCTCTGTAAACTAATACAAGATCAT 57.786 33.333 0.00 0.00 35.48 2.45
3996 4784 9.838339 CCCTCTGTAAACTAATACAAGATCATT 57.162 33.333 0.00 0.00 35.48 2.57
4028 4816 8.463456 ACTAAAGTAGTGATCTAAACGCTTTC 57.537 34.615 0.00 0.00 37.69 2.62
4029 4817 8.086522 ACTAAAGTAGTGATCTAAACGCTTTCA 58.913 33.333 0.00 0.00 37.69 2.69
4030 4818 7.907214 AAAGTAGTGATCTAAACGCTTTCAT 57.093 32.000 0.00 0.00 0.00 2.57
4031 4819 8.997621 AAAGTAGTGATCTAAACGCTTTCATA 57.002 30.769 0.00 0.00 0.00 2.15
4032 4820 9.601217 AAAGTAGTGATCTAAACGCTTTCATAT 57.399 29.630 0.00 0.00 0.00 1.78
4033 4821 9.601217 AAGTAGTGATCTAAACGCTTTCATATT 57.399 29.630 0.00 0.00 0.00 1.28
4037 4825 9.601217 AGTGATCTAAACGCTTTCATATTAGTT 57.399 29.630 0.00 0.00 0.00 2.24
4045 4833 7.772332 ACGCTTTCATATTAGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
4046 4834 6.761714 ACGCTTTCATATTAGTTTACAGAGGG 59.238 38.462 0.00 0.00 0.00 4.30
4065 4853 8.603304 ACAGAGGGAGTACTACATTTTATGTTT 58.397 33.333 7.57 0.00 41.63 2.83
4097 4885 5.240623 TCTGCAAGAATTATGTCGGTTGTTT 59.759 36.000 0.00 0.00 42.31 2.83
4144 4932 5.749588 CAGATTGTTTGAAGTTTGCATGTGA 59.250 36.000 0.00 0.00 0.00 3.58
4146 4934 3.433709 TGTTTGAAGTTTGCATGTGACG 58.566 40.909 0.00 0.00 0.00 4.35
4148 4936 4.202000 TGTTTGAAGTTTGCATGTGACGAT 60.202 37.500 0.00 0.00 0.00 3.73
4168 4956 1.202359 TGGGCAAGAGCGTTGAAAAAC 60.202 47.619 6.07 0.00 43.41 2.43
4170 4958 2.385315 GGCAAGAGCGTTGAAAAACTC 58.615 47.619 6.07 0.00 43.41 3.01
4171 4959 2.223479 GGCAAGAGCGTTGAAAAACTCA 60.223 45.455 6.07 0.00 43.41 3.41
4184 4972 5.690865 TGAAAAACTCAATGTCCCAGTACT 58.309 37.500 0.00 0.00 0.00 2.73
4211 4999 1.065854 GTTGGGGTGGACAGAGATCAG 60.066 57.143 0.00 0.00 0.00 2.90
4220 5008 2.615869 GACAGAGATCAGGTGACTTGC 58.384 52.381 0.00 0.00 40.21 4.01
4221 5009 1.277557 ACAGAGATCAGGTGACTTGCC 59.722 52.381 0.00 0.00 40.21 4.52
4222 5010 0.908198 AGAGATCAGGTGACTTGCCC 59.092 55.000 0.00 0.00 40.21 5.36
4223 5011 0.615331 GAGATCAGGTGACTTGCCCA 59.385 55.000 0.00 0.00 40.21 5.36
4224 5012 1.211457 GAGATCAGGTGACTTGCCCAT 59.789 52.381 0.00 0.00 40.21 4.00
4225 5013 1.064906 AGATCAGGTGACTTGCCCATG 60.065 52.381 0.00 0.00 40.21 3.66
4241 5029 1.155889 CATGGCAAGTCACGCTGTAA 58.844 50.000 0.00 0.00 0.00 2.41
4357 5145 3.356529 AGCCAGGACAAAGTCATTAGG 57.643 47.619 0.00 0.00 33.68 2.69
4458 5248 3.857093 GCCTGTTTGCGTTATACAAATGG 59.143 43.478 0.00 0.00 39.09 3.16
4481 5271 4.631377 GCATTGTATACTGAGTGCAAGTGA 59.369 41.667 4.17 0.00 33.09 3.41
4500 5290 8.834465 GCAAGTGATCATCATTTATTAGTCACT 58.166 33.333 0.00 0.00 44.79 3.41
4585 5375 2.282180 AAGCCATCCAACGCGGTT 60.282 55.556 12.47 0.00 35.57 4.44
4623 5413 1.656652 CGGTCTGGATGCGATTTCTT 58.343 50.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.561725 ACTTGTCCGAAGAAGAAGCAAAG 59.438 43.478 0.00 0.00 0.00 2.77
2 3 3.541632 ACTTGTCCGAAGAAGAAGCAAA 58.458 40.909 0.00 0.00 0.00 3.68
3 4 3.194005 ACTTGTCCGAAGAAGAAGCAA 57.806 42.857 0.00 0.00 0.00 3.91
19 20 2.490115 AGAAGACACGAGGCTCTACTTG 59.510 50.000 13.50 6.82 0.00 3.16
20 21 2.797786 AGAAGACACGAGGCTCTACTT 58.202 47.619 13.50 11.59 0.00 2.24
27 28 1.016653 GGAGCAAGAAGACACGAGGC 61.017 60.000 0.00 0.00 0.00 4.70
70 71 4.040755 AGCCTATTGATGTACAACTCCCT 58.959 43.478 0.00 0.00 41.52 4.20
85 86 1.344763 GACCCGCACATCTAGCCTATT 59.655 52.381 0.00 0.00 0.00 1.73
199 723 6.332735 AGTTGTTTCTTAATCTTTCCCAGC 57.667 37.500 0.00 0.00 0.00 4.85
222 746 5.512404 CCCCATCCACGTTTAGCTTCATATA 60.512 44.000 0.00 0.00 0.00 0.86
225 749 2.643551 CCCATCCACGTTTAGCTTCAT 58.356 47.619 0.00 0.00 0.00 2.57
237 761 1.257750 GGGTCAAAAGCCCCATCCAC 61.258 60.000 0.00 0.00 40.88 4.02
245 769 2.552743 GAGTAAGTGTGGGTCAAAAGCC 59.447 50.000 0.00 0.00 43.74 4.35
246 770 3.211045 TGAGTAAGTGTGGGTCAAAAGC 58.789 45.455 0.00 0.00 0.00 3.51
258 782 2.457366 ACGAGCCCTTTGAGTAAGTG 57.543 50.000 0.00 0.00 31.56 3.16
298 822 1.852280 CGCGACGAATCTGCTATTCAA 59.148 47.619 0.00 0.00 0.00 2.69
304 828 0.945099 TCTATCGCGACGAATCTGCT 59.055 50.000 12.93 0.00 39.99 4.24
313 837 4.113354 ACTTCTCCATTTTCTATCGCGAC 58.887 43.478 12.93 0.00 0.00 5.19
318 842 6.293135 GCCAATCGACTTCTCCATTTTCTATC 60.293 42.308 0.00 0.00 0.00 2.08
319 843 5.529060 GCCAATCGACTTCTCCATTTTCTAT 59.471 40.000 0.00 0.00 0.00 1.98
320 844 4.876107 GCCAATCGACTTCTCCATTTTCTA 59.124 41.667 0.00 0.00 0.00 2.10
328 852 2.517450 CGCGCCAATCGACTTCTCC 61.517 63.158 0.00 0.00 41.67 3.71
329 853 2.517450 CCGCGCCAATCGACTTCTC 61.517 63.158 0.00 0.00 41.67 2.87
330 854 2.509336 CCGCGCCAATCGACTTCT 60.509 61.111 0.00 0.00 41.67 2.85
334 858 2.279517 ATCTCCGCGCCAATCGAC 60.280 61.111 0.00 0.00 41.67 4.20
364 888 2.549754 CAAACTGTAAGGTCAGTGCCTG 59.450 50.000 6.85 0.00 46.25 4.85
381 905 3.062042 CACCCGACTGTAGTTACCAAAC 58.938 50.000 0.00 0.00 35.72 2.93
403 938 1.000506 GAGTTCACCTCTGTGCGGTTA 59.999 52.381 0.00 0.00 42.46 2.85
427 962 8.863872 TTATTGTCTCTATCACCTCGATGATA 57.136 34.615 8.15 8.15 39.97 2.15
429 964 7.582667 TTTATTGTCTCTATCACCTCGATGA 57.417 36.000 0.00 0.00 35.39 2.92
454 989 2.076863 CCGAAAGAGCGACCTTCATTT 58.923 47.619 0.00 0.00 0.00 2.32
459 994 0.391597 TTGACCGAAAGAGCGACCTT 59.608 50.000 0.00 0.00 0.00 3.50
477 1012 2.615447 CGCAAGGTGATACATGCTGATT 59.385 45.455 0.00 0.00 36.67 2.57
486 1021 4.808895 TGACAATCATACGCAAGGTGATAC 59.191 41.667 0.00 0.00 43.12 2.24
498 1033 9.767684 TCGAAAACAATATGTTGACAATCATAC 57.232 29.630 9.40 0.00 40.14 2.39
500 1035 7.485913 GCTCGAAAACAATATGTTGACAATCAT 59.514 33.333 9.40 0.22 40.14 2.45
507 1042 5.094812 GCATGCTCGAAAACAATATGTTGA 58.905 37.500 11.37 0.00 40.14 3.18
513 1048 8.432110 TCTTTATAGCATGCTCGAAAACAATA 57.568 30.769 26.57 10.95 0.00 1.90
532 1067 3.561725 GGCAGCGCAATTAGTCTCTTTAT 59.438 43.478 11.47 0.00 0.00 1.40
533 1068 2.936498 GGCAGCGCAATTAGTCTCTTTA 59.064 45.455 11.47 0.00 0.00 1.85
534 1069 1.740025 GGCAGCGCAATTAGTCTCTTT 59.260 47.619 11.47 0.00 0.00 2.52
535 1070 1.339055 TGGCAGCGCAATTAGTCTCTT 60.339 47.619 11.47 0.00 0.00 2.85
536 1071 0.250234 TGGCAGCGCAATTAGTCTCT 59.750 50.000 11.47 0.00 0.00 3.10
537 1072 1.003116 CATGGCAGCGCAATTAGTCTC 60.003 52.381 11.47 0.00 0.00 3.36
538 1073 1.019673 CATGGCAGCGCAATTAGTCT 58.980 50.000 11.47 0.00 0.00 3.24
539 1074 1.016627 TCATGGCAGCGCAATTAGTC 58.983 50.000 11.47 0.00 0.00 2.59
540 1075 1.683943 ATCATGGCAGCGCAATTAGT 58.316 45.000 11.47 0.00 0.00 2.24
541 1076 2.787601 AATCATGGCAGCGCAATTAG 57.212 45.000 11.47 0.00 0.00 1.73
542 1077 3.631686 ACTAAATCATGGCAGCGCAATTA 59.368 39.130 11.47 0.00 0.00 1.40
543 1078 2.428171 ACTAAATCATGGCAGCGCAATT 59.572 40.909 11.47 0.00 0.00 2.32
544 1079 2.026641 ACTAAATCATGGCAGCGCAAT 58.973 42.857 11.47 0.00 0.00 3.56
545 1080 1.462616 ACTAAATCATGGCAGCGCAA 58.537 45.000 11.47 0.00 0.00 4.85
546 1081 1.401552 GAACTAAATCATGGCAGCGCA 59.598 47.619 11.47 0.00 0.00 6.09
547 1082 1.595489 CGAACTAAATCATGGCAGCGC 60.595 52.381 0.00 0.00 0.00 5.92
548 1083 1.933181 TCGAACTAAATCATGGCAGCG 59.067 47.619 0.00 0.00 0.00 5.18
549 1084 2.286654 GCTCGAACTAAATCATGGCAGC 60.287 50.000 0.00 0.00 0.00 5.25
550 1085 2.938451 TGCTCGAACTAAATCATGGCAG 59.062 45.455 0.00 0.00 0.00 4.85
551 1086 2.984562 TGCTCGAACTAAATCATGGCA 58.015 42.857 0.00 0.00 0.00 4.92
580 1115 7.363355 GGCAGCATAATTAGTCTCTCTATAGCA 60.363 40.741 0.00 0.00 0.00 3.49
581 1116 6.978080 GGCAGCATAATTAGTCTCTCTATAGC 59.022 42.308 0.00 0.00 0.00 2.97
582 1117 8.060931 TGGCAGCATAATTAGTCTCTCTATAG 57.939 38.462 0.00 0.00 0.00 1.31
583 1118 8.473219 CATGGCAGCATAATTAGTCTCTCTATA 58.527 37.037 0.00 0.00 0.00 1.31
584 1119 6.924913 TGGCAGCATAATTAGTCTCTCTAT 57.075 37.500 0.00 0.00 0.00 1.98
585 1120 6.494835 TCATGGCAGCATAATTAGTCTCTCTA 59.505 38.462 0.00 0.00 0.00 2.43
586 1121 5.306419 TCATGGCAGCATAATTAGTCTCTCT 59.694 40.000 0.00 0.00 0.00 3.10
587 1122 5.545588 TCATGGCAGCATAATTAGTCTCTC 58.454 41.667 0.00 0.00 0.00 3.20
625 1160 9.825972 CATTCGTTTCACACACTTTATTTCTAT 57.174 29.630 0.00 0.00 0.00 1.98
636 1171 6.472163 ACAATCTTTTCATTCGTTTCACACAC 59.528 34.615 0.00 0.00 0.00 3.82
725 1263 1.474330 GGATGGTTCCTTGGCGAATT 58.526 50.000 0.00 0.00 39.14 2.17
726 1264 0.748005 CGGATGGTTCCTTGGCGAAT 60.748 55.000 0.00 0.00 40.17 3.34
767 1305 1.310933 GGATTGTGCCAGACTGCCAG 61.311 60.000 0.00 0.00 0.00 4.85
796 1334 8.200792 AGCCAGAATATTGACAGTCTTAGTTAG 58.799 37.037 1.31 0.00 0.00 2.34
892 1430 4.607239 AGGGGATAAAGAGAGTTCGTGTA 58.393 43.478 0.00 0.00 0.00 2.90
1069 1616 1.135489 GCAGTACTCGACATCGGTGAA 60.135 52.381 0.65 0.00 40.29 3.18
1103 1650 3.322466 CGGGGGCAGAACTCCTGT 61.322 66.667 0.00 0.00 44.71 4.00
1343 1890 4.236935 ACACGCAAGGAAATAAAAGCATG 58.763 39.130 0.00 0.00 46.39 4.06
1755 2338 7.056006 TGGATCATATAAGTCACACAAAGCAT 58.944 34.615 0.00 0.00 0.00 3.79
1793 2377 8.606830 AGAGGGAGTAATTTTCTGAAATACAGT 58.393 33.333 13.46 2.51 45.86 3.55
1819 2406 2.358582 CAGCGGCAATTAACATGGATCA 59.641 45.455 1.45 0.00 0.00 2.92
1827 2414 6.114221 TGTACTAAATCAGCGGCAATTAAC 57.886 37.500 1.45 0.66 0.00 2.01
1835 2422 5.180492 TCCAAACTTTGTACTAAATCAGCGG 59.820 40.000 0.88 0.00 0.00 5.52
1863 2450 7.931275 AGAACTTCACAGATTTTCAAAGTACC 58.069 34.615 0.00 0.00 0.00 3.34
2116 2719 2.290323 ACTCTTGGTTCTGTACATGGGC 60.290 50.000 0.00 0.00 0.00 5.36
2238 2841 6.007076 TGTACATGGGCAAATAGTTTCTCAA 58.993 36.000 0.00 0.00 0.00 3.02
2472 3253 7.120726 CGAGAACCAGTAACAAGGGAATAAAAT 59.879 37.037 0.00 0.00 0.00 1.82
2485 3266 3.027974 ACTTCTGCGAGAACCAGTAAC 57.972 47.619 0.00 0.00 29.89 2.50
2588 3369 4.282195 AGACTAAGCTGCTCTTAAGTGTGT 59.718 41.667 1.00 0.00 36.87 3.72
2633 3414 3.436704 TGCATACTACTCAAAGCTGCAAC 59.563 43.478 1.02 0.00 36.24 4.17
2780 3561 2.693074 TCAGTCGCCATATGCTGAACTA 59.307 45.455 7.94 0.00 35.36 2.24
2948 3730 3.474920 AGGATCCCATTTGAAGTAGGGT 58.525 45.455 8.55 0.00 42.12 4.34
3016 3798 6.899089 TCATCCAACAGGCAAATTAGAGATA 58.101 36.000 0.00 0.00 0.00 1.98
3358 4143 3.381908 GGGTCTTCGTACAGATGTCATCT 59.618 47.826 9.68 9.68 41.15 2.90
3548 4335 5.067273 AGGACAACCGATACAAACAATTCA 58.933 37.500 0.00 0.00 41.83 2.57
3592 4380 1.238439 CCACAGAGCAAAATGACCGT 58.762 50.000 0.00 0.00 0.00 4.83
3741 4529 0.506932 CACAAGTGTGTAGTTCCGCG 59.493 55.000 0.00 0.00 40.96 6.46
3936 4724 5.249420 ACAGAATTTTCTCTAAGAGCCCAC 58.751 41.667 0.00 0.00 34.74 4.61
3970 4758 9.838339 AATGATCTTGTATTAGTTTACAGAGGG 57.162 33.333 0.00 0.00 33.81 4.30
4003 4791 8.086522 TGAAAGCGTTTAGATCACTACTTTAGT 58.913 33.333 0.00 0.00 40.28 2.24
4004 4792 8.462143 TGAAAGCGTTTAGATCACTACTTTAG 57.538 34.615 0.00 0.00 28.42 1.85
4005 4793 8.997621 ATGAAAGCGTTTAGATCACTACTTTA 57.002 30.769 0.00 0.00 28.42 1.85
4006 4794 7.907214 ATGAAAGCGTTTAGATCACTACTTT 57.093 32.000 0.00 0.00 29.82 2.66
4007 4795 9.601217 AATATGAAAGCGTTTAGATCACTACTT 57.399 29.630 0.00 0.00 0.00 2.24
4011 4799 9.601217 AACTAATATGAAAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 0.00 3.41
4019 4807 8.665685 CCTCTGTAAACTAATATGAAAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
4020 4808 7.280205 CCCTCTGTAAACTAATATGAAAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
4021 4809 6.761714 CCCTCTGTAAACTAATATGAAAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
4022 4810 6.984474 TCCCTCTGTAAACTAATATGAAAGCG 59.016 38.462 0.00 0.00 0.00 4.68
4023 4811 7.988028 ACTCCCTCTGTAAACTAATATGAAAGC 59.012 37.037 0.00 0.00 0.00 3.51
4026 4814 9.710818 AGTACTCCCTCTGTAAACTAATATGAA 57.289 33.333 0.00 0.00 0.00 2.57
4031 4819 9.490083 AATGTAGTACTCCCTCTGTAAACTAAT 57.510 33.333 0.00 0.00 0.00 1.73
4032 4820 8.890410 AATGTAGTACTCCCTCTGTAAACTAA 57.110 34.615 0.00 0.00 0.00 2.24
4033 4821 8.890410 AAATGTAGTACTCCCTCTGTAAACTA 57.110 34.615 0.00 0.00 0.00 2.24
4034 4822 7.793948 AAATGTAGTACTCCCTCTGTAAACT 57.206 36.000 0.00 0.00 0.00 2.66
4037 4825 9.263446 ACATAAAATGTAGTACTCCCTCTGTAA 57.737 33.333 0.00 0.00 42.78 2.41
4038 4826 8.834004 ACATAAAATGTAGTACTCCCTCTGTA 57.166 34.615 0.00 0.00 42.78 2.74
4039 4827 7.735326 ACATAAAATGTAGTACTCCCTCTGT 57.265 36.000 0.00 0.00 42.78 3.41
4043 4831 9.847224 CCATAAACATAAAATGTAGTACTCCCT 57.153 33.333 0.00 0.00 44.07 4.20
4044 4832 9.623000 ACCATAAACATAAAATGTAGTACTCCC 57.377 33.333 0.00 0.00 44.07 4.30
4051 4839 9.722056 GCAGAAGACCATAAACATAAAATGTAG 57.278 33.333 0.00 0.00 44.07 2.74
4065 4853 6.479990 CGACATAATTCTTGCAGAAGACCATA 59.520 38.462 5.15 0.00 37.69 2.74
4066 4854 5.295292 CGACATAATTCTTGCAGAAGACCAT 59.705 40.000 5.15 0.00 37.69 3.55
4067 4855 4.631377 CGACATAATTCTTGCAGAAGACCA 59.369 41.667 5.15 0.00 37.69 4.02
4068 4856 4.034510 CCGACATAATTCTTGCAGAAGACC 59.965 45.833 5.15 0.00 37.69 3.85
4076 4864 5.457140 TGAAACAACCGACATAATTCTTGC 58.543 37.500 0.00 0.00 0.00 4.01
4130 4918 2.414559 CCCATCGTCACATGCAAACTTC 60.415 50.000 0.00 0.00 0.00 3.01
4144 4932 2.034879 CAACGCTCTTGCCCATCGT 61.035 57.895 0.00 0.00 35.36 3.73
4146 4934 0.881118 TTTCAACGCTCTTGCCCATC 59.119 50.000 0.00 0.00 35.36 3.51
4148 4936 1.107114 TTTTTCAACGCTCTTGCCCA 58.893 45.000 0.00 0.00 35.36 5.36
4168 4956 4.697514 CCATGTAGTACTGGGACATTGAG 58.302 47.826 5.39 0.00 38.20 3.02
4184 4972 0.772517 TGTCCACCCCAACCCATGTA 60.773 55.000 0.00 0.00 0.00 2.29
4220 5008 2.360350 AGCGTGACTTGCCATGGG 60.360 61.111 15.13 0.00 0.00 4.00
4221 5009 0.673333 TACAGCGTGACTTGCCATGG 60.673 55.000 7.63 7.63 0.00 3.66
4222 5010 1.135972 GTTACAGCGTGACTTGCCATG 60.136 52.381 0.00 0.00 0.00 3.66
4223 5011 1.156736 GTTACAGCGTGACTTGCCAT 58.843 50.000 0.00 0.00 0.00 4.40
4224 5012 0.105964 AGTTACAGCGTGACTTGCCA 59.894 50.000 1.39 0.00 27.82 4.92
4225 5013 0.512952 CAGTTACAGCGTGACTTGCC 59.487 55.000 3.97 0.00 29.95 4.52
4241 5029 1.227764 CTGATGCATAGCCGCCAGT 60.228 57.895 0.00 0.00 0.00 4.00
4435 5225 4.480541 CATTTGTATAACGCAAACAGGCA 58.519 39.130 0.00 0.00 38.44 4.75
4458 5248 4.631377 TCACTTGCACTCAGTATACAATGC 59.369 41.667 5.50 9.27 0.00 3.56
4469 5259 7.634671 AATAAATGATGATCACTTGCACTCA 57.365 32.000 0.00 0.00 0.00 3.41
4500 5290 2.169352 GTCTGCCTTGGAGATGCTCTAA 59.831 50.000 0.00 0.00 31.72 2.10
4518 5308 1.073897 GCAGGAGGTTTGCAGGTCT 59.926 57.895 0.00 0.00 41.17 3.85
4551 5341 4.671590 TCCTCGGTCCGGACAGCA 62.672 66.667 34.40 19.07 0.00 4.41
4563 5353 2.464459 GCGTTGGATGGCTTCCTCG 61.464 63.158 19.03 20.99 45.68 4.63
4580 5370 1.588139 CGGACCGATACAGAACCGC 60.588 63.158 8.64 0.00 34.36 5.68
4582 5372 1.588139 CGCGGACCGATACAGAACC 60.588 63.158 20.50 0.00 40.02 3.62
4585 5375 2.124612 TCCGCGGACCGATACAGA 60.125 61.111 27.28 0.00 40.02 3.41
4623 5413 3.776347 TTTGCCTCCGGTTTGCGGA 62.776 57.895 0.00 0.00 0.00 5.54
4631 5421 1.675641 CCTCCACTTTTGCCTCCGG 60.676 63.158 0.00 0.00 0.00 5.14
4637 5427 2.225727 CGTAAACCTCCTCCACTTTTGC 59.774 50.000 0.00 0.00 0.00 3.68
4643 5433 0.535797 CTCCCGTAAACCTCCTCCAC 59.464 60.000 0.00 0.00 0.00 4.02
4663 5453 3.467226 GCTTGGGATCGGTCCGGA 61.467 66.667 12.29 0.00 46.09 5.14
4696 5486 2.813726 GGGGTTTTTGGTGGGCCAC 61.814 63.158 28.69 28.69 46.01 5.01
4702 5492 1.133482 AGTGAGGAGGGGTTTTTGGTG 60.133 52.381 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.