Multiple sequence alignment - TraesCS2D01G250000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G250000 chr2D 100.000 6396 0 0 1 6396 297291339 297297734 0.000000e+00 11812.0
1 TraesCS2D01G250000 chr2A 96.938 5062 79 18 728 5731 369810353 369815396 0.000000e+00 8419.0
2 TraesCS2D01G250000 chr2A 86.846 745 63 20 1 728 369809285 369810011 0.000000e+00 800.0
3 TraesCS2D01G250000 chr2B 97.811 2970 32 9 659 3615 364316220 364319169 0.000000e+00 5094.0
4 TraesCS2D01G250000 chr2B 98.088 2144 15 8 3606 5731 364319344 364321479 0.000000e+00 3709.0
5 TraesCS2D01G250000 chr6B 93.096 478 26 2 5727 6197 488850639 488850162 0.000000e+00 693.0
6 TraesCS2D01G250000 chr6B 92.553 470 29 2 5727 6190 532161526 532161995 0.000000e+00 669.0
7 TraesCS2D01G250000 chr6B 89.542 153 16 0 4968 5120 14165672 14165824 1.820000e-45 195.0
8 TraesCS2D01G250000 chr6B 88.235 153 18 0 4968 5120 13970231 13970079 3.940000e-42 183.0
9 TraesCS2D01G250000 chr6B 86.667 60 4 4 6340 6395 532162454 532162513 5.350000e-06 63.9
10 TraesCS2D01G250000 chr5B 92.355 484 31 3 5727 6204 631824134 631823651 0.000000e+00 684.0
11 TraesCS2D01G250000 chr5B 97.000 200 6 0 5914 6113 596730025 596729826 2.860000e-88 337.0
12 TraesCS2D01G250000 chr5B 93.878 147 9 0 5729 5875 596730172 596730026 8.350000e-54 222.0
13 TraesCS2D01G250000 chr5B 81.731 104 18 1 316 418 616657140 616657037 1.140000e-12 86.1
14 TraesCS2D01G250000 chr3D 94.976 418 18 2 5729 6146 499592219 499591805 0.000000e+00 652.0
15 TraesCS2D01G250000 chr3D 88.889 54 4 2 6345 6396 499591128 499591075 1.490000e-06 65.8
16 TraesCS2D01G250000 chr5D 93.632 424 27 0 5722 6145 542679645 542679222 9.050000e-178 634.0
17 TraesCS2D01G250000 chr5D 74.706 340 61 16 79 415 398126239 398126556 1.870000e-25 128.0
18 TraesCS2D01G250000 chr5D 88.889 54 4 2 6345 6396 542678674 542678621 1.490000e-06 65.8
19 TraesCS2D01G250000 chr6A 88.235 153 18 0 4968 5120 7724228 7724380 3.940000e-42 183.0
20 TraesCS2D01G250000 chr6A 87.273 55 5 2 300 353 479618947 479619000 1.930000e-05 62.1
21 TraesCS2D01G250000 chr7B 83.333 150 25 0 2900 3049 504443827 504443976 8.650000e-29 139.0
22 TraesCS2D01G250000 chr3A 73.235 340 80 11 79 413 521637616 521637283 5.240000e-21 113.0
23 TraesCS2D01G250000 chr5A 75.785 223 45 6 174 390 691843293 691843512 3.150000e-18 104.0
24 TraesCS2D01G250000 chr5A 72.989 348 73 14 74 415 427201217 427201549 1.130000e-17 102.0
25 TraesCS2D01G250000 chr5A 100.000 30 0 0 360 389 643301514 643301543 8.960000e-04 56.5
26 TraesCS2D01G250000 chr1A 84.043 94 11 3 452 544 479026249 479026159 3.180000e-13 87.9
27 TraesCS2D01G250000 chr1A 83.333 78 12 1 79 155 591727634 591727711 3.200000e-08 71.3
28 TraesCS2D01G250000 chr3B 79.661 118 23 1 79 195 770444980 770444863 4.110000e-12 84.2
29 TraesCS2D01G250000 chr4B 97.436 39 1 0 78 116 656687861 656687899 4.140000e-07 67.6
30 TraesCS2D01G250000 chr7D 95.000 40 2 0 5496 5535 478791217 478791256 5.350000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G250000 chr2D 297291339 297297734 6395 False 11812.00 11812 100.0000 1 6396 1 chr2D.!!$F1 6395
1 TraesCS2D01G250000 chr2A 369809285 369815396 6111 False 4609.50 8419 91.8920 1 5731 2 chr2A.!!$F1 5730
2 TraesCS2D01G250000 chr2B 364316220 364321479 5259 False 4401.50 5094 97.9495 659 5731 2 chr2B.!!$F1 5072
3 TraesCS2D01G250000 chr6B 532161526 532162513 987 False 366.45 669 89.6100 5727 6395 2 chr6B.!!$F2 668
4 TraesCS2D01G250000 chr3D 499591075 499592219 1144 True 358.90 652 91.9325 5729 6396 2 chr3D.!!$R1 667
5 TraesCS2D01G250000 chr5D 542678621 542679645 1024 True 349.90 634 91.2605 5722 6396 2 chr5D.!!$R1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 444 0.395586 TTCATTGATTCCCTGCCCGG 60.396 55.000 0.0 0.0 0.00 5.73 F
442 446 0.684153 CATTGATTCCCTGCCCGGTT 60.684 55.000 0.0 0.0 0.00 4.44 F
2076 2473 0.387202 AATCGGCTCACTCGATCAGG 59.613 55.000 0.0 0.0 45.20 3.86 F
2526 2923 2.297033 GCCAAGGAAAACATGAAGAGCA 59.703 45.455 0.0 0.0 0.00 4.26 F
3334 3732 4.078639 ACTGTAGCTCAAGTTGCTTCTT 57.921 40.909 0.0 0.0 41.46 2.52 F
4514 5113 2.825532 CCCGTTGGTTCAAATCTTGGAT 59.174 45.455 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2317 2.095919 GGTCGTGCTGGATTTTGTACAC 60.096 50.000 0.0 0.0 0.00 2.90 R
2195 2592 5.226396 TCCAAATTATGAAAACCAAGCACG 58.774 37.500 0.0 0.0 0.00 5.34 R
3327 3725 7.288810 ACCACAAAGATTTTATCAAGAAGCA 57.711 32.000 0.0 0.0 0.00 3.91 R
4514 5113 2.948979 GTGACATTTCGGGCATATTGGA 59.051 45.455 0.0 0.0 0.00 3.53 R
4903 5502 4.074970 TCAGCTTCTTCCCTGATGAAAAC 58.925 43.478 0.0 0.0 33.44 2.43 R
6220 7639 0.109153 AACGTACAGGAACCCAACCC 59.891 55.000 0.0 0.0 0.00 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.105128 GAGATGCGGTGGACCTCG 59.895 66.667 0.00 0.00 0.00 4.63
36 37 1.376037 GGACCTCGGTCTTTGCCAG 60.376 63.158 15.18 0.00 44.04 4.85
37 38 2.032681 ACCTCGGTCTTTGCCAGC 59.967 61.111 0.00 0.00 0.00 4.85
39 40 3.121030 CTCGGTCTTTGCCAGCGG 61.121 66.667 0.00 0.00 35.47 5.52
77 78 4.344102 AGTTTCTAGGTGTCTGCTTGTGTA 59.656 41.667 0.00 0.00 0.00 2.90
79 80 5.483685 TTCTAGGTGTCTGCTTGTGTATT 57.516 39.130 0.00 0.00 0.00 1.89
123 124 0.879765 AAAGACGAGACGACGATGGT 59.120 50.000 0.00 0.00 37.03 3.55
127 128 1.226603 CGAGACGACGATGGTTCCC 60.227 63.158 0.00 0.00 35.09 3.97
135 136 2.555199 GACGATGGTTCCCTGAAGATG 58.445 52.381 0.00 0.00 0.00 2.90
139 140 4.202441 CGATGGTTCCCTGAAGATGAAAT 58.798 43.478 0.00 0.00 0.00 2.17
142 143 6.017605 CGATGGTTCCCTGAAGATGAAATAAG 60.018 42.308 0.00 0.00 0.00 1.73
143 144 6.387192 TGGTTCCCTGAAGATGAAATAAGA 57.613 37.500 0.00 0.00 0.00 2.10
157 159 3.662759 AATAAGATTCTTCCCGCCCAA 57.337 42.857 1.27 0.00 0.00 4.12
161 163 0.748367 GATTCTTCCCGCCCAACTCC 60.748 60.000 0.00 0.00 0.00 3.85
197 200 0.592148 CTAGCATCGTCGGAGGGTAC 59.408 60.000 0.00 0.00 36.02 3.34
203 206 2.832201 GTCGGAGGGTACGAGGGG 60.832 72.222 0.00 0.00 41.50 4.79
219 222 4.629523 GGGTGTGTTCCGGCGGAA 62.630 66.667 35.71 35.71 39.66 4.30
239 243 0.680921 CCACGGGATTCAGTTGGCAT 60.681 55.000 0.00 0.00 0.00 4.40
314 318 4.900684 TGTCGACAGGTTGGATAAATTCA 58.099 39.130 15.76 0.00 0.00 2.57
353 357 3.186702 TGACGATGGTTGTTGTTCTGA 57.813 42.857 0.00 0.00 0.00 3.27
354 358 3.738982 TGACGATGGTTGTTGTTCTGAT 58.261 40.909 0.00 0.00 0.00 2.90
371 375 0.539986 GATACGCTGGTCCTTTGGGA 59.460 55.000 0.00 0.00 39.70 4.37
383 387 2.093658 TCCTTTGGGATCTTAGCACGAC 60.094 50.000 0.00 0.00 36.57 4.34
384 388 1.927174 CTTTGGGATCTTAGCACGACG 59.073 52.381 0.00 0.00 0.00 5.12
429 433 8.791327 AAAAAGTTTTGTCCAACTTCATTGAT 57.209 26.923 0.61 0.00 44.62 2.57
430 434 8.791327 AAAAGTTTTGTCCAACTTCATTGATT 57.209 26.923 0.00 0.00 44.62 2.57
431 435 8.424274 AAAGTTTTGTCCAACTTCATTGATTC 57.576 30.769 0.00 0.00 44.62 2.52
432 436 6.515832 AGTTTTGTCCAACTTCATTGATTCC 58.484 36.000 0.00 0.00 41.23 3.01
433 437 5.467035 TTTGTCCAACTTCATTGATTCCC 57.533 39.130 0.00 0.00 41.23 3.97
434 438 4.387026 TGTCCAACTTCATTGATTCCCT 57.613 40.909 0.00 0.00 41.23 4.20
435 439 4.081406 TGTCCAACTTCATTGATTCCCTG 58.919 43.478 0.00 0.00 41.23 4.45
436 440 3.091545 TCCAACTTCATTGATTCCCTGC 58.908 45.455 0.00 0.00 41.23 4.85
438 442 2.149973 ACTTCATTGATTCCCTGCCC 57.850 50.000 0.00 0.00 0.00 5.36
439 443 1.027357 CTTCATTGATTCCCTGCCCG 58.973 55.000 0.00 0.00 0.00 6.13
440 444 0.395586 TTCATTGATTCCCTGCCCGG 60.396 55.000 0.00 0.00 0.00 5.73
441 445 1.076777 CATTGATTCCCTGCCCGGT 60.077 57.895 0.00 0.00 0.00 5.28
442 446 0.684153 CATTGATTCCCTGCCCGGTT 60.684 55.000 0.00 0.00 0.00 4.44
443 447 0.684153 ATTGATTCCCTGCCCGGTTG 60.684 55.000 0.00 0.00 0.00 3.77
444 448 2.075355 TTGATTCCCTGCCCGGTTGT 62.075 55.000 0.00 0.00 0.00 3.32
446 450 3.583882 ATTCCCTGCCCGGTTGTGG 62.584 63.158 0.00 0.00 0.00 4.17
449 453 3.953775 CCTGCCCGGTTGTGGTCT 61.954 66.667 0.00 0.00 0.00 3.85
450 454 2.589157 CCTGCCCGGTTGTGGTCTA 61.589 63.158 0.00 0.00 0.00 2.59
451 455 1.375523 CTGCCCGGTTGTGGTCTAC 60.376 63.158 0.00 0.00 0.00 2.59
460 469 1.812686 TTGTGGTCTACGGCTCGCTT 61.813 55.000 0.00 0.00 0.00 4.68
477 486 4.430007 TCGCTTCAGTGCTTATAATCGTT 58.570 39.130 0.00 0.00 0.00 3.85
543 552 4.152223 TGTGCTCTTTGTATTGTCGTGATG 59.848 41.667 0.00 0.00 0.00 3.07
545 554 4.994217 TGCTCTTTGTATTGTCGTGATGAA 59.006 37.500 0.00 0.00 0.00 2.57
546 555 5.643348 TGCTCTTTGTATTGTCGTGATGAAT 59.357 36.000 0.00 0.00 0.00 2.57
547 556 6.183360 TGCTCTTTGTATTGTCGTGATGAATC 60.183 38.462 0.00 0.00 0.00 2.52
548 557 6.036517 GCTCTTTGTATTGTCGTGATGAATCT 59.963 38.462 0.00 0.00 0.00 2.40
549 558 7.222805 GCTCTTTGTATTGTCGTGATGAATCTA 59.777 37.037 0.00 0.00 0.00 1.98
552 561 9.254133 CTTTGTATTGTCGTGATGAATCTAGAT 57.746 33.333 0.00 0.00 0.00 1.98
553 562 8.803201 TTGTATTGTCGTGATGAATCTAGATC 57.197 34.615 5.51 0.68 0.00 2.75
554 563 7.078228 TGTATTGTCGTGATGAATCTAGATCG 58.922 38.462 5.51 4.33 0.00 3.69
555 564 5.751243 TTGTCGTGATGAATCTAGATCGA 57.249 39.130 5.51 6.77 0.00 3.59
557 566 6.131544 TGTCGTGATGAATCTAGATCGAAA 57.868 37.500 5.51 1.93 0.00 3.46
558 567 6.202226 TGTCGTGATGAATCTAGATCGAAAG 58.798 40.000 5.51 0.00 0.00 2.62
559 568 6.183360 TGTCGTGATGAATCTAGATCGAAAGT 60.183 38.462 5.51 0.00 0.00 2.66
560 569 6.693545 GTCGTGATGAATCTAGATCGAAAGTT 59.306 38.462 5.51 0.00 0.00 2.66
563 572 9.020813 CGTGATGAATCTAGATCGAAAGTTAAA 57.979 33.333 5.51 0.00 0.00 1.52
568 577 9.938280 TGAATCTAGATCGAAAGTTAAAAGGAA 57.062 29.630 5.51 0.00 0.00 3.36
629 645 1.981533 GAAGAAGACAAAATGCAGCGC 59.018 47.619 0.00 0.00 0.00 5.92
633 649 2.050168 ACAAAATGCAGCGCGTGG 60.050 55.556 8.43 0.49 0.00 4.94
663 679 4.379243 CTCAACGCCCAGCCGTCT 62.379 66.667 0.00 0.00 41.16 4.18
664 680 2.992689 TCAACGCCCAGCCGTCTA 60.993 61.111 0.00 0.00 41.16 2.59
693 709 2.284515 GATCCCGAGCCCAAACCCAT 62.285 60.000 0.00 0.00 0.00 4.00
910 1270 3.142174 CCGAGAGCTAATTCCCAAATCC 58.858 50.000 0.00 0.00 0.00 3.01
1657 2053 3.243873 ACGAGTATCATGCGATTGACCAT 60.244 43.478 0.00 0.00 32.73 3.55
1658 2054 3.122445 CGAGTATCATGCGATTGACCATG 59.878 47.826 0.00 0.00 40.05 3.66
1921 2317 1.531423 AGATGTTGAAGCAGCAGGTG 58.469 50.000 0.00 0.00 0.00 4.00
2069 2466 5.931441 AAAATATGCTAATCGGCTCACTC 57.069 39.130 0.00 0.00 0.00 3.51
2076 2473 0.387202 AATCGGCTCACTCGATCAGG 59.613 55.000 0.00 0.00 45.20 3.86
2135 2532 3.972227 GCGACAGCTTCACATGGT 58.028 55.556 0.00 0.00 41.01 3.55
2195 2592 6.350110 GGAGAGAATGCTCATATAGTCCAGTC 60.350 46.154 2.79 0.00 43.81 3.51
2526 2923 2.297033 GCCAAGGAAAACATGAAGAGCA 59.703 45.455 0.00 0.00 0.00 4.26
2837 3234 8.301002 TGCTGAACTTTTGTTGTTAGTTTAGTT 58.699 29.630 0.00 0.00 43.66 2.24
3327 3725 4.532521 ACCCATCTTACTGTAGCTCAAGTT 59.467 41.667 6.54 0.00 0.00 2.66
3334 3732 4.078639 ACTGTAGCTCAAGTTGCTTCTT 57.921 40.909 0.00 0.00 41.46 2.52
4514 5113 2.825532 CCCGTTGGTTCAAATCTTGGAT 59.174 45.455 0.00 0.00 0.00 3.41
4755 5354 4.536090 TGTGGAGAACCCTGATGAAATAGT 59.464 41.667 0.00 0.00 35.38 2.12
4756 5355 5.724370 TGTGGAGAACCCTGATGAAATAGTA 59.276 40.000 0.00 0.00 35.38 1.82
4757 5356 6.214615 TGTGGAGAACCCTGATGAAATAGTAA 59.785 38.462 0.00 0.00 35.38 2.24
5185 5784 8.004215 AGACAATGGGCATATATTTTACTTCCA 58.996 33.333 0.00 0.00 0.00 3.53
5529 6130 2.440409 GATGACAATGTGGAAGCACCT 58.560 47.619 0.00 0.00 39.86 4.00
5736 6337 2.349886 GCCAGAAGTTGTTAGAGCATCG 59.650 50.000 0.00 0.00 42.67 3.84
5756 6357 4.820897 TCGCCAATAGCTTGTCTATATGG 58.179 43.478 0.00 0.00 37.01 2.74
5765 6366 9.935241 AATAGCTTGTCTATATGGTTGTCTATG 57.065 33.333 0.00 0.00 37.01 2.23
5768 6369 6.708054 GCTTGTCTATATGGTTGTCTATGCTT 59.292 38.462 0.00 0.00 0.00 3.91
5769 6370 7.227512 GCTTGTCTATATGGTTGTCTATGCTTT 59.772 37.037 0.00 0.00 0.00 3.51
5948 6549 3.707640 CTCCGTCGCCCTCTCTCCT 62.708 68.421 0.00 0.00 0.00 3.69
6120 6721 4.673298 CGCCGCCGCATATGGGTA 62.673 66.667 17.56 0.00 34.03 3.69
6151 6758 4.137872 CGTATGGGTCGCCACCGT 62.138 66.667 0.00 0.00 44.91 4.83
6231 7650 4.735358 GCTCGGGGGTTGGGTTCC 62.735 72.222 0.00 0.00 0.00 3.62
6232 7651 2.933834 CTCGGGGGTTGGGTTCCT 60.934 66.667 0.00 0.00 0.00 3.36
6233 7652 3.253838 TCGGGGGTTGGGTTCCTG 61.254 66.667 0.00 0.00 0.00 3.86
6234 7653 3.576259 CGGGGGTTGGGTTCCTGT 61.576 66.667 0.00 0.00 0.00 4.00
6235 7654 2.225596 CGGGGGTTGGGTTCCTGTA 61.226 63.158 0.00 0.00 0.00 2.74
6236 7655 1.381463 GGGGGTTGGGTTCCTGTAC 59.619 63.158 0.00 0.00 0.00 2.90
6237 7656 1.002990 GGGGTTGGGTTCCTGTACG 60.003 63.158 0.00 0.00 0.00 3.67
6238 7657 1.756665 GGGTTGGGTTCCTGTACGT 59.243 57.895 0.00 0.00 0.00 3.57
6243 7662 1.340088 TGGGTTCCTGTACGTTGCTA 58.660 50.000 0.00 0.00 0.00 3.49
6249 7668 1.067846 TCCTGTACGTTGCTACTGCTG 60.068 52.381 0.00 0.00 40.48 4.41
6255 7674 5.416083 TGTACGTTGCTACTGCTGAATATT 58.584 37.500 0.00 0.00 40.48 1.28
6256 7675 4.864916 ACGTTGCTACTGCTGAATATTG 57.135 40.909 0.00 0.00 40.48 1.90
6257 7676 4.503910 ACGTTGCTACTGCTGAATATTGA 58.496 39.130 0.00 0.00 40.48 2.57
6258 7677 5.118990 ACGTTGCTACTGCTGAATATTGAT 58.881 37.500 0.00 0.00 40.48 2.57
6259 7678 5.007039 ACGTTGCTACTGCTGAATATTGATG 59.993 40.000 0.00 0.00 40.48 3.07
6260 7679 5.007039 CGTTGCTACTGCTGAATATTGATGT 59.993 40.000 0.00 0.00 40.48 3.06
6261 7680 6.200854 CGTTGCTACTGCTGAATATTGATGTA 59.799 38.462 0.00 0.00 40.48 2.29
6262 7681 7.348201 GTTGCTACTGCTGAATATTGATGTAC 58.652 38.462 0.00 0.00 40.48 2.90
6263 7682 6.820335 TGCTACTGCTGAATATTGATGTACT 58.180 36.000 0.00 0.00 40.48 2.73
6264 7683 6.703165 TGCTACTGCTGAATATTGATGTACTG 59.297 38.462 0.00 0.00 40.48 2.74
6265 7684 6.925718 GCTACTGCTGAATATTGATGTACTGA 59.074 38.462 0.00 0.00 36.03 3.41
6266 7685 7.439356 GCTACTGCTGAATATTGATGTACTGAA 59.561 37.037 0.00 0.00 36.03 3.02
6267 7686 7.783090 ACTGCTGAATATTGATGTACTGAAG 57.217 36.000 0.00 0.00 0.00 3.02
6268 7687 7.559486 ACTGCTGAATATTGATGTACTGAAGA 58.441 34.615 0.00 0.00 0.00 2.87
6269 7688 8.209584 ACTGCTGAATATTGATGTACTGAAGAT 58.790 33.333 0.00 0.00 0.00 2.40
6270 7689 8.969260 TGCTGAATATTGATGTACTGAAGATT 57.031 30.769 0.00 0.00 0.00 2.40
6277 7696 7.783090 ATTGATGTACTGAAGATTACTGCTG 57.217 36.000 0.00 0.00 0.00 4.41
6278 7697 6.530019 TGATGTACTGAAGATTACTGCTGA 57.470 37.500 0.00 0.00 0.00 4.26
6279 7698 6.935167 TGATGTACTGAAGATTACTGCTGAA 58.065 36.000 0.00 0.00 0.00 3.02
6280 7699 7.559486 TGATGTACTGAAGATTACTGCTGAAT 58.441 34.615 0.00 0.00 0.00 2.57
6281 7700 8.043113 TGATGTACTGAAGATTACTGCTGAATT 58.957 33.333 0.00 0.00 0.00 2.17
6282 7701 8.798859 ATGTACTGAAGATTACTGCTGAATTT 57.201 30.769 0.00 0.00 0.00 1.82
6283 7702 8.621532 TGTACTGAAGATTACTGCTGAATTTT 57.378 30.769 0.00 0.00 0.00 1.82
6284 7703 8.506437 TGTACTGAAGATTACTGCTGAATTTTG 58.494 33.333 0.00 0.00 0.00 2.44
6285 7704 6.385033 ACTGAAGATTACTGCTGAATTTTGC 58.615 36.000 0.00 0.00 0.00 3.68
6286 7705 6.208204 ACTGAAGATTACTGCTGAATTTTGCT 59.792 34.615 0.00 0.00 0.00 3.91
6287 7706 7.391554 ACTGAAGATTACTGCTGAATTTTGCTA 59.608 33.333 0.00 0.00 0.00 3.49
6288 7707 7.755591 TGAAGATTACTGCTGAATTTTGCTAG 58.244 34.615 0.00 0.00 0.00 3.42
6289 7708 7.391554 TGAAGATTACTGCTGAATTTTGCTAGT 59.608 33.333 0.00 8.55 0.00 2.57
6290 7709 8.792830 AAGATTACTGCTGAATTTTGCTAGTA 57.207 30.769 0.00 7.84 0.00 1.82
6291 7710 8.202745 AGATTACTGCTGAATTTTGCTAGTAC 57.797 34.615 0.00 0.00 0.00 2.73
6292 7711 8.043710 AGATTACTGCTGAATTTTGCTAGTACT 58.956 33.333 0.00 0.00 0.00 2.73
6293 7712 9.314321 GATTACTGCTGAATTTTGCTAGTACTA 57.686 33.333 1.89 1.89 0.00 1.82
6294 7713 6.969828 ACTGCTGAATTTTGCTAGTACTAC 57.030 37.500 0.00 0.00 0.00 2.73
6295 7714 6.702329 ACTGCTGAATTTTGCTAGTACTACT 58.298 36.000 0.00 0.00 0.00 2.57
6296 7715 6.591834 ACTGCTGAATTTTGCTAGTACTACTG 59.408 38.462 0.00 0.00 0.00 2.74
6297 7716 6.697395 TGCTGAATTTTGCTAGTACTACTGA 58.303 36.000 0.00 0.00 0.00 3.41
6298 7717 7.158697 TGCTGAATTTTGCTAGTACTACTGAA 58.841 34.615 0.00 0.00 0.00 3.02
6299 7718 7.331934 TGCTGAATTTTGCTAGTACTACTGAAG 59.668 37.037 0.00 0.00 0.00 3.02
6300 7719 7.545965 GCTGAATTTTGCTAGTACTACTGAAGA 59.454 37.037 0.00 0.00 0.00 2.87
6301 7720 9.593134 CTGAATTTTGCTAGTACTACTGAAGAT 57.407 33.333 0.00 0.00 0.00 2.40
6302 7721 9.587772 TGAATTTTGCTAGTACTACTGAAGATC 57.412 33.333 0.00 0.00 0.00 2.75
6303 7722 9.810545 GAATTTTGCTAGTACTACTGAAGATCT 57.189 33.333 0.00 0.00 0.00 2.75
6350 7769 2.690786 TGAATGCTGAATTTTGCTGCC 58.309 42.857 0.00 0.00 0.00 4.85
6351 7770 2.004733 GAATGCTGAATTTTGCTGCCC 58.995 47.619 0.00 0.00 0.00 5.36
6352 7771 1.272807 ATGCTGAATTTTGCTGCCCT 58.727 45.000 0.00 0.00 0.00 5.19
6353 7772 0.319083 TGCTGAATTTTGCTGCCCTG 59.681 50.000 0.00 0.00 0.00 4.45
6354 7773 0.319405 GCTGAATTTTGCTGCCCTGT 59.681 50.000 0.00 0.00 0.00 4.00
6356 7775 2.416431 GCTGAATTTTGCTGCCCTGTAG 60.416 50.000 0.00 0.00 0.00 2.74
6357 7776 2.821969 CTGAATTTTGCTGCCCTGTAGT 59.178 45.455 0.00 0.00 0.00 2.73
6358 7777 2.557924 TGAATTTTGCTGCCCTGTAGTG 59.442 45.455 0.00 0.00 0.00 2.74
6363 7862 1.279496 TGCTGCCCTGTAGTGAAGAT 58.721 50.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.374252 CAAAGACCGAGGTCCACCG 60.374 63.158 17.85 1.97 45.59 4.94
25 26 2.747855 CTCCCGCTGGCAAAGACC 60.748 66.667 0.00 0.00 0.00 3.85
43 44 5.542779 ACACCTAGAAACTAAGCAGAAGTG 58.457 41.667 0.00 0.00 0.00 3.16
44 45 5.540719 AGACACCTAGAAACTAAGCAGAAGT 59.459 40.000 0.00 0.00 0.00 3.01
48 49 3.929610 GCAGACACCTAGAAACTAAGCAG 59.070 47.826 0.00 0.00 0.00 4.24
99 100 1.459975 TCGTCGTCTCGTCTTTCTGAG 59.540 52.381 0.00 0.00 0.00 3.35
123 124 9.401058 GAAGAATCTTATTTCATCTTCAGGGAA 57.599 33.333 0.00 0.00 43.36 3.97
127 128 7.519649 GCGGGAAGAATCTTATTTCATCTTCAG 60.520 40.741 13.81 9.10 44.86 3.02
135 136 3.551846 TGGGCGGGAAGAATCTTATTTC 58.448 45.455 0.00 0.00 0.00 2.17
139 140 1.913419 AGTTGGGCGGGAAGAATCTTA 59.087 47.619 0.00 0.00 0.00 2.10
142 143 0.748367 GGAGTTGGGCGGGAAGAATC 60.748 60.000 0.00 0.00 0.00 2.52
143 144 1.303282 GGAGTTGGGCGGGAAGAAT 59.697 57.895 0.00 0.00 0.00 2.40
197 200 4.388499 CCGGAACACACCCCCTCG 62.388 72.222 0.00 0.00 0.00 4.63
219 222 1.303317 GCCAACTGAATCCCGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
239 243 5.878116 CCAAGTAGATCCACCGAATACAAAA 59.122 40.000 0.00 0.00 0.00 2.44
272 276 5.060569 CGACATACCAACGTAGAAGAACAAG 59.939 44.000 0.00 0.00 0.00 3.16
274 278 4.216042 TCGACATACCAACGTAGAAGAACA 59.784 41.667 0.00 0.00 0.00 3.18
314 318 4.800993 CGTCAATGAAGAGAAGCGTAGATT 59.199 41.667 0.00 0.00 41.04 2.40
353 357 2.691663 TCCCAAAGGACCAGCGTAT 58.308 52.632 0.00 0.00 37.19 3.06
354 358 4.218856 TCCCAAAGGACCAGCGTA 57.781 55.556 0.00 0.00 37.19 4.42
371 375 2.915463 CGAAAAGTCGTCGTGCTAAGAT 59.085 45.455 0.00 0.00 42.53 2.40
384 388 6.490566 TTTTTAGTAGGCCATCGAAAAGTC 57.509 37.500 5.01 0.00 0.00 3.01
408 412 6.462909 GGGAATCAATGAAGTTGGACAAAACT 60.463 38.462 0.00 0.00 42.21 2.66
417 421 2.167075 GGGCAGGGAATCAATGAAGTTG 59.833 50.000 0.00 0.00 39.25 3.16
418 422 2.460669 GGGCAGGGAATCAATGAAGTT 58.539 47.619 0.00 0.00 0.00 2.66
427 431 2.046285 CACAACCGGGCAGGGAATC 61.046 63.158 6.32 0.00 46.96 2.52
429 433 4.278513 CCACAACCGGGCAGGGAA 62.279 66.667 6.32 0.00 46.96 3.97
433 437 1.375523 GTAGACCACAACCGGGCAG 60.376 63.158 6.32 0.00 35.99 4.85
434 438 2.745037 GTAGACCACAACCGGGCA 59.255 61.111 6.32 0.00 35.99 5.36
435 439 2.433664 CGTAGACCACAACCGGGC 60.434 66.667 6.32 0.00 0.00 6.13
436 440 2.263540 CCGTAGACCACAACCGGG 59.736 66.667 6.32 0.00 35.11 5.73
438 442 1.445582 GAGCCGTAGACCACAACCG 60.446 63.158 0.00 0.00 0.00 4.44
439 443 1.445582 CGAGCCGTAGACCACAACC 60.446 63.158 0.00 0.00 0.00 3.77
440 444 2.092882 GCGAGCCGTAGACCACAAC 61.093 63.158 0.00 0.00 0.00 3.32
441 445 1.812686 AAGCGAGCCGTAGACCACAA 61.813 55.000 0.00 0.00 0.00 3.33
442 446 2.209064 GAAGCGAGCCGTAGACCACA 62.209 60.000 0.00 0.00 0.00 4.17
443 447 1.516603 GAAGCGAGCCGTAGACCAC 60.517 63.158 0.00 0.00 0.00 4.16
444 448 1.934220 CTGAAGCGAGCCGTAGACCA 61.934 60.000 0.00 0.00 0.00 4.02
446 450 0.798771 CACTGAAGCGAGCCGTAGAC 60.799 60.000 0.00 0.00 0.00 2.59
447 451 1.506718 CACTGAAGCGAGCCGTAGA 59.493 57.895 0.00 0.00 0.00 2.59
448 452 2.161486 GCACTGAAGCGAGCCGTAG 61.161 63.158 0.00 0.00 0.00 3.51
449 453 2.126071 GCACTGAAGCGAGCCGTA 60.126 61.111 0.00 0.00 0.00 4.02
450 454 2.154798 TAAGCACTGAAGCGAGCCGT 62.155 55.000 0.00 0.00 40.15 5.68
451 455 0.807667 ATAAGCACTGAAGCGAGCCG 60.808 55.000 0.00 0.00 40.15 5.52
460 469 7.814587 CCATCTATCAACGATTATAAGCACTGA 59.185 37.037 1.10 3.19 0.00 3.41
477 486 8.569596 ACATCTAGGTCCATATACCATCTATCA 58.430 37.037 0.00 0.00 42.40 2.15
506 515 7.319646 ACAAAGAGCACATGAAGTAACAAAAA 58.680 30.769 0.00 0.00 0.00 1.94
511 520 7.584987 ACAATACAAAGAGCACATGAAGTAAC 58.415 34.615 0.00 0.00 0.00 2.50
519 528 4.314961 TCACGACAATACAAAGAGCACAT 58.685 39.130 0.00 0.00 0.00 3.21
524 533 7.531280 AGATTCATCACGACAATACAAAGAG 57.469 36.000 0.00 0.00 0.00 2.85
526 535 8.634475 TCTAGATTCATCACGACAATACAAAG 57.366 34.615 0.00 0.00 0.00 2.77
583 599 4.800023 TCGGTCTGATTTCTGGGACTATA 58.200 43.478 0.00 0.00 0.00 1.31
593 609 5.120986 GTCTTCTTCCTTTCGGTCTGATTTC 59.879 44.000 0.00 0.00 0.00 2.17
633 649 1.671379 GTTGAGCCGTTCCACCCTC 60.671 63.158 0.00 0.00 0.00 4.30
661 677 3.409570 CTCGGGATCATACGGAGTTAGA 58.590 50.000 0.00 0.00 37.78 2.10
662 678 2.095161 GCTCGGGATCATACGGAGTTAG 60.095 54.545 6.33 0.00 37.78 2.34
663 679 1.884579 GCTCGGGATCATACGGAGTTA 59.115 52.381 6.33 0.00 37.78 2.24
664 680 0.674534 GCTCGGGATCATACGGAGTT 59.325 55.000 6.33 0.00 37.78 3.01
693 709 2.123683 TGGGCCGCTGTTTTGGAA 60.124 55.556 0.00 0.00 0.00 3.53
1414 1809 2.660900 CGTTTAAACAGTAGCACGTGGC 60.661 50.000 18.88 9.78 45.30 5.01
1921 2317 2.095919 GGTCGTGCTGGATTTTGTACAC 60.096 50.000 0.00 0.00 0.00 2.90
2069 2466 6.743110 TCAGAGTGATCTAAAATCCTGATCG 58.257 40.000 0.00 0.00 39.36 3.69
2135 2532 9.809096 TTCTTGCAAAATATTTTGTAGTGACAA 57.191 25.926 31.43 24.81 46.92 3.18
2195 2592 5.226396 TCCAAATTATGAAAACCAAGCACG 58.774 37.500 0.00 0.00 0.00 5.34
2323 2720 8.177663 CGGATATTATGGAAACTCATAACATGC 58.822 37.037 0.00 0.00 40.89 4.06
2452 2849 4.910195 TGGCAGTCATGTCACTTCTTTAT 58.090 39.130 0.00 0.00 35.69 1.40
2526 2923 2.831770 CCCAGCTGCCGATGGTAT 59.168 61.111 8.66 0.00 45.24 2.73
2609 3006 6.430925 CCTCTGAACCTTCATTTACACATTCA 59.569 38.462 0.00 0.00 36.46 2.57
2837 3234 1.550524 AGAGCTGCCATCGTTAAGACA 59.449 47.619 0.00 0.00 0.00 3.41
3327 3725 7.288810 ACCACAAAGATTTTATCAAGAAGCA 57.711 32.000 0.00 0.00 0.00 3.91
4514 5113 2.948979 GTGACATTTCGGGCATATTGGA 59.051 45.455 0.00 0.00 0.00 3.53
4755 5354 8.887264 ATGGTCCATACTTTGGTTGTTTATTA 57.113 30.769 1.24 0.00 46.52 0.98
4756 5355 7.790782 ATGGTCCATACTTTGGTTGTTTATT 57.209 32.000 1.24 0.00 46.52 1.40
4757 5356 7.453126 TGAATGGTCCATACTTTGGTTGTTTAT 59.547 33.333 4.33 0.00 46.52 1.40
4903 5502 4.074970 TCAGCTTCTTCCCTGATGAAAAC 58.925 43.478 0.00 0.00 33.44 2.43
5185 5784 7.600752 GTCTTAACTGAACTCTGACAGCTAATT 59.399 37.037 0.00 0.00 37.61 1.40
5529 6130 5.714806 ACAAAAAGTTCTTGACTCTTCCCAA 59.285 36.000 0.00 0.00 37.72 4.12
5736 6337 5.765182 ACAACCATATAGACAAGCTATTGGC 59.235 40.000 0.00 0.00 45.62 4.52
5786 6387 4.479158 AGCTGTTGGACCTCCATTTTAAA 58.521 39.130 0.00 0.00 46.97 1.52
5787 6388 4.112634 AGCTGTTGGACCTCCATTTTAA 57.887 40.909 0.00 0.00 46.97 1.52
5788 6389 3.806949 AGCTGTTGGACCTCCATTTTA 57.193 42.857 0.00 0.00 46.97 1.52
5948 6549 1.962822 CAGAGCAAGCGACTTGGCA 60.963 57.895 17.36 0.00 41.31 4.92
6012 6613 2.347691 TACCTCGCCTCGGGATGCTA 62.348 60.000 0.00 0.00 0.00 3.49
6151 6758 3.220999 CTCGACCCAGACACGGCAA 62.221 63.158 0.00 0.00 0.00 4.52
6190 7222 3.083997 CCCTCCCTCGACCCCAAG 61.084 72.222 0.00 0.00 0.00 3.61
6214 7633 4.735358 GGAACCCAACCCCCGAGC 62.735 72.222 0.00 0.00 0.00 5.03
6215 7634 2.933834 AGGAACCCAACCCCCGAG 60.934 66.667 0.00 0.00 0.00 4.63
6216 7635 2.692909 TACAGGAACCCAACCCCCGA 62.693 60.000 0.00 0.00 0.00 5.14
6217 7636 2.225596 TACAGGAACCCAACCCCCG 61.226 63.158 0.00 0.00 0.00 5.73
6218 7637 1.381463 GTACAGGAACCCAACCCCC 59.619 63.158 0.00 0.00 0.00 5.40
6219 7638 1.002990 CGTACAGGAACCCAACCCC 60.003 63.158 0.00 0.00 0.00 4.95
6220 7639 0.109153 AACGTACAGGAACCCAACCC 59.891 55.000 0.00 0.00 0.00 4.11
6221 7640 1.232119 CAACGTACAGGAACCCAACC 58.768 55.000 0.00 0.00 0.00 3.77
6222 7641 0.589708 GCAACGTACAGGAACCCAAC 59.410 55.000 0.00 0.00 0.00 3.77
6223 7642 0.470766 AGCAACGTACAGGAACCCAA 59.529 50.000 0.00 0.00 0.00 4.12
6224 7643 1.001181 GTAGCAACGTACAGGAACCCA 59.999 52.381 0.00 0.00 0.00 4.51
6225 7644 1.274447 AGTAGCAACGTACAGGAACCC 59.726 52.381 0.00 0.00 0.00 4.11
6226 7645 2.334838 CAGTAGCAACGTACAGGAACC 58.665 52.381 0.00 0.00 0.00 3.62
6227 7646 1.725164 GCAGTAGCAACGTACAGGAAC 59.275 52.381 0.00 0.00 41.58 3.62
6228 7647 1.616865 AGCAGTAGCAACGTACAGGAA 59.383 47.619 0.00 0.00 45.49 3.36
6229 7648 1.067846 CAGCAGTAGCAACGTACAGGA 60.068 52.381 0.00 0.00 45.49 3.86
6230 7649 1.067846 TCAGCAGTAGCAACGTACAGG 60.068 52.381 0.00 0.00 45.49 4.00
6231 7650 2.347697 TCAGCAGTAGCAACGTACAG 57.652 50.000 0.00 0.00 45.49 2.74
6232 7651 2.804697 TTCAGCAGTAGCAACGTACA 57.195 45.000 0.00 0.00 45.49 2.90
6233 7652 5.518847 TCAATATTCAGCAGTAGCAACGTAC 59.481 40.000 0.00 0.00 45.49 3.67
6234 7653 5.656480 TCAATATTCAGCAGTAGCAACGTA 58.344 37.500 0.00 0.00 45.49 3.57
6235 7654 4.503910 TCAATATTCAGCAGTAGCAACGT 58.496 39.130 0.00 0.00 45.49 3.99
6236 7655 5.007039 ACATCAATATTCAGCAGTAGCAACG 59.993 40.000 0.00 0.00 45.49 4.10
6237 7656 6.369059 ACATCAATATTCAGCAGTAGCAAC 57.631 37.500 0.00 0.00 45.49 4.17
6238 7657 7.225341 CAGTACATCAATATTCAGCAGTAGCAA 59.775 37.037 0.00 0.00 45.49 3.91
6243 7662 7.559486 TCTTCAGTACATCAATATTCAGCAGT 58.441 34.615 0.00 0.00 0.00 4.40
6255 7674 6.530019 TCAGCAGTAATCTTCAGTACATCA 57.470 37.500 0.00 0.00 0.00 3.07
6256 7675 8.430801 AATTCAGCAGTAATCTTCAGTACATC 57.569 34.615 0.00 0.00 0.00 3.06
6257 7676 8.798859 AAATTCAGCAGTAATCTTCAGTACAT 57.201 30.769 0.00 0.00 0.00 2.29
6258 7677 8.506437 CAAAATTCAGCAGTAATCTTCAGTACA 58.494 33.333 0.00 0.00 0.00 2.90
6259 7678 7.483059 GCAAAATTCAGCAGTAATCTTCAGTAC 59.517 37.037 0.00 0.00 0.00 2.73
6260 7679 7.391554 AGCAAAATTCAGCAGTAATCTTCAGTA 59.608 33.333 5.08 0.00 0.00 2.74
6261 7680 6.208204 AGCAAAATTCAGCAGTAATCTTCAGT 59.792 34.615 5.08 0.00 0.00 3.41
6262 7681 6.618811 AGCAAAATTCAGCAGTAATCTTCAG 58.381 36.000 5.08 0.00 0.00 3.02
6263 7682 6.579666 AGCAAAATTCAGCAGTAATCTTCA 57.420 33.333 5.08 0.00 0.00 3.02
6264 7683 7.756558 ACTAGCAAAATTCAGCAGTAATCTTC 58.243 34.615 5.08 0.00 0.00 2.87
6265 7684 7.693969 ACTAGCAAAATTCAGCAGTAATCTT 57.306 32.000 5.08 0.00 0.00 2.40
6266 7685 8.043710 AGTACTAGCAAAATTCAGCAGTAATCT 58.956 33.333 0.00 3.58 31.36 2.40
6267 7686 8.202745 AGTACTAGCAAAATTCAGCAGTAATC 57.797 34.615 0.00 1.98 31.36 1.75
6268 7687 9.099454 GTAGTACTAGCAAAATTCAGCAGTAAT 57.901 33.333 1.87 10.31 32.23 1.89
6269 7688 8.311836 AGTAGTACTAGCAAAATTCAGCAGTAA 58.688 33.333 1.87 0.00 31.36 2.24
6270 7689 7.759886 CAGTAGTACTAGCAAAATTCAGCAGTA 59.240 37.037 1.87 7.27 0.00 2.74
6271 7690 6.591834 CAGTAGTACTAGCAAAATTCAGCAGT 59.408 38.462 1.87 8.01 0.00 4.40
6272 7691 6.813649 TCAGTAGTACTAGCAAAATTCAGCAG 59.186 38.462 1.87 3.51 0.00 4.24
6273 7692 6.697395 TCAGTAGTACTAGCAAAATTCAGCA 58.303 36.000 1.87 0.00 0.00 4.41
6274 7693 7.545965 TCTTCAGTAGTACTAGCAAAATTCAGC 59.454 37.037 1.87 0.00 0.00 4.26
6275 7694 8.988064 TCTTCAGTAGTACTAGCAAAATTCAG 57.012 34.615 1.87 0.00 0.00 3.02
6276 7695 9.587772 GATCTTCAGTAGTACTAGCAAAATTCA 57.412 33.333 1.87 0.00 0.00 2.57
6277 7696 9.810545 AGATCTTCAGTAGTACTAGCAAAATTC 57.189 33.333 1.87 0.00 0.00 2.17
6319 7738 9.582431 CAAAATTCAGCATTCAATCTTCAGTAT 57.418 29.630 0.00 0.00 0.00 2.12
6320 7739 7.543172 GCAAAATTCAGCATTCAATCTTCAGTA 59.457 33.333 0.00 0.00 0.00 2.74
6321 7740 6.367969 GCAAAATTCAGCATTCAATCTTCAGT 59.632 34.615 0.00 0.00 0.00 3.41
6322 7741 6.590292 AGCAAAATTCAGCATTCAATCTTCAG 59.410 34.615 5.08 0.00 0.00 3.02
6323 7742 6.367695 CAGCAAAATTCAGCATTCAATCTTCA 59.632 34.615 5.08 0.00 0.00 3.02
6324 7743 6.672357 GCAGCAAAATTCAGCATTCAATCTTC 60.672 38.462 5.08 0.00 0.00 2.87
6325 7744 5.121768 GCAGCAAAATTCAGCATTCAATCTT 59.878 36.000 5.08 0.00 0.00 2.40
6326 7745 4.630069 GCAGCAAAATTCAGCATTCAATCT 59.370 37.500 5.08 0.00 0.00 2.40
6327 7746 4.201783 GGCAGCAAAATTCAGCATTCAATC 60.202 41.667 0.00 0.00 0.00 2.67
6328 7747 3.687698 GGCAGCAAAATTCAGCATTCAAT 59.312 39.130 0.00 0.00 0.00 2.57
6329 7748 3.068560 GGCAGCAAAATTCAGCATTCAA 58.931 40.909 0.00 0.00 0.00 2.69
6332 7751 1.626825 AGGGCAGCAAAATTCAGCATT 59.373 42.857 0.00 0.00 0.00 3.56
6350 7769 6.805271 CAGCAAAATTCAATCTTCACTACAGG 59.195 38.462 0.00 0.00 0.00 4.00
6351 7770 6.307318 GCAGCAAAATTCAATCTTCACTACAG 59.693 38.462 0.00 0.00 0.00 2.74
6352 7771 6.151691 GCAGCAAAATTCAATCTTCACTACA 58.848 36.000 0.00 0.00 0.00 2.74
6353 7772 5.574443 GGCAGCAAAATTCAATCTTCACTAC 59.426 40.000 0.00 0.00 0.00 2.73
6354 7773 5.336690 GGGCAGCAAAATTCAATCTTCACTA 60.337 40.000 0.00 0.00 0.00 2.74
6356 7775 3.681417 GGGCAGCAAAATTCAATCTTCAC 59.319 43.478 0.00 0.00 0.00 3.18
6357 7776 3.306919 GGGGCAGCAAAATTCAATCTTCA 60.307 43.478 0.00 0.00 0.00 3.02
6358 7777 3.055602 AGGGGCAGCAAAATTCAATCTTC 60.056 43.478 0.00 0.00 0.00 2.87
6363 7862 1.422531 ACAGGGGCAGCAAAATTCAA 58.577 45.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.