Multiple sequence alignment - TraesCS2D01G248800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G248800 chr2D 100.000 3140 0 0 1 3140 293684619 293681480 0.000000e+00 5799
1 TraesCS2D01G248800 chr2D 96.644 149 5 0 2992 3140 209029614 209029466 6.720000e-62 248
2 TraesCS2D01G248800 chr2B 96.131 1189 23 5 1227 2399 369501302 369500121 0.000000e+00 1919
3 TraesCS2D01G248800 chr2B 94.793 653 10 6 73 721 369502574 369501942 0.000000e+00 996
4 TraesCS2D01G248800 chr2B 95.009 541 26 1 749 1288 369501874 369501334 0.000000e+00 848
5 TraesCS2D01G248800 chr2B 90.941 287 14 6 2497 2781 369499803 369499527 2.960000e-100 375
6 TraesCS2D01G248800 chr2B 94.231 156 8 1 2835 2990 75839814 75839660 1.460000e-58 237
7 TraesCS2D01G248800 chr2A 96.112 1183 33 4 1227 2399 360750695 360749516 0.000000e+00 1917
8 TraesCS2D01G248800 chr2A 95.347 1182 23 13 92 1264 360751903 360750745 0.000000e+00 1849
9 TraesCS2D01G248800 chr2A 91.385 325 19 4 2497 2819 360749222 360748905 1.340000e-118 436
10 TraesCS2D01G248800 chr4D 94.872 156 8 0 2985 3140 43650765 43650610 8.700000e-61 244
11 TraesCS2D01G248800 chr4D 94.667 150 8 0 2991 3140 379161695 379161844 1.880000e-57 233
12 TraesCS2D01G248800 chr4D 94.631 149 8 0 2992 3140 421897874 421898022 6.770000e-57 231
13 TraesCS2D01G248800 chr7D 95.302 149 7 0 2992 3140 110569101 110568953 1.460000e-58 237
14 TraesCS2D01G248800 chr7D 94.156 154 9 0 2987 3140 431880970 431881123 5.240000e-58 235
15 TraesCS2D01G248800 chr7D 92.073 164 11 2 2978 3140 310992883 310993045 2.440000e-56 230
16 TraesCS2D01G248800 chr1D 95.333 150 4 2 2991 3140 479040406 479040552 5.240000e-58 235
17 TraesCS2D01G248800 chr3D 94.667 150 8 0 2991 3140 313898519 313898370 1.880000e-57 233
18 TraesCS2D01G248800 chr6D 92.949 156 10 1 2835 2990 11104873 11104719 3.150000e-55 226
19 TraesCS2D01G248800 chr7A 92.405 158 11 1 2833 2990 17260234 17260078 1.130000e-54 224
20 TraesCS2D01G248800 chr6A 92.903 155 10 1 2836 2990 4532036 4532189 1.130000e-54 224
21 TraesCS2D01G248800 chrUn 92.357 157 11 1 2835 2990 91006478 91006634 4.080000e-54 222
22 TraesCS2D01G248800 chrUn 92.357 157 11 1 2835 2990 91114068 91114224 4.080000e-54 222
23 TraesCS2D01G248800 chrUn 92.357 157 11 1 2835 2990 135315620 135315464 4.080000e-54 222
24 TraesCS2D01G248800 chrUn 92.357 157 11 1 2835 2990 340335658 340335814 4.080000e-54 222
25 TraesCS2D01G248800 chr3B 91.772 158 13 0 2833 2990 762638657 762638814 1.470000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G248800 chr2D 293681480 293684619 3139 True 5799.000000 5799 100.000000 1 3140 1 chr2D.!!$R2 3139
1 TraesCS2D01G248800 chr2B 369499527 369502574 3047 True 1034.500000 1919 94.218500 73 2781 4 chr2B.!!$R2 2708
2 TraesCS2D01G248800 chr2A 360748905 360751903 2998 True 1400.666667 1917 94.281333 92 2819 3 chr2A.!!$R1 2727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.402121 AGGGGGAAAGTGAGAACTGC 59.598 55.0 0.0 0.0 0.00 4.40 F
50 51 0.402121 GGGGGAAAGTGAGAACTGCT 59.598 55.0 0.0 0.0 0.00 4.24 F
67 68 0.467290 GCTGACAAACACCCCCAGAA 60.467 55.0 0.0 0.0 0.00 3.02 F
1320 1552 0.799393 GCGAAGGCTCAGAAAAGGAC 59.201 55.0 0.0 0.0 35.83 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1611 1.209019 CATCAGGTCCAGTCTCCTTGG 59.791 57.143 0.0 0.0 37.04 3.61 R
1393 1625 2.481854 GCTACTGTCATCTGCATCAGG 58.518 52.381 0.0 0.0 32.92 3.86 R
1493 1731 4.594920 TCTTCTTGTTCTCATGTTCCTCCT 59.405 41.667 0.0 0.0 0.00 3.69 R
2971 3455 0.035439 ATGGCTTGGTAGTCGTTGGG 60.035 55.000 0.0 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.760298 ACTCAACATGTCATACTCATCATGTC 59.240 38.462 0.00 0.00 46.33 3.06
26 27 6.051074 TCAACATGTCATACTCATCATGTCC 58.949 40.000 0.00 0.00 46.33 4.02
27 28 4.625028 ACATGTCATACTCATCATGTCCG 58.375 43.478 0.00 0.00 44.66 4.79
28 29 4.342092 ACATGTCATACTCATCATGTCCGA 59.658 41.667 0.00 0.00 44.66 4.55
29 30 4.574599 TGTCATACTCATCATGTCCGAG 57.425 45.455 0.00 0.00 0.00 4.63
30 31 4.207165 TGTCATACTCATCATGTCCGAGA 58.793 43.478 13.30 1.73 0.00 4.04
31 32 4.276926 TGTCATACTCATCATGTCCGAGAG 59.723 45.833 13.30 7.92 0.00 3.20
32 33 9.853111 CATGTCATACTCATCATGTCCGAGAGG 62.853 48.148 13.30 5.08 39.67 3.69
44 45 2.977578 CGAGAGGGGGAAAGTGAGA 58.022 57.895 0.00 0.00 0.00 3.27
45 46 1.267121 CGAGAGGGGGAAAGTGAGAA 58.733 55.000 0.00 0.00 0.00 2.87
46 47 1.066787 CGAGAGGGGGAAAGTGAGAAC 60.067 57.143 0.00 0.00 0.00 3.01
47 48 2.261729 GAGAGGGGGAAAGTGAGAACT 58.738 52.381 0.00 0.00 0.00 3.01
48 49 1.981495 AGAGGGGGAAAGTGAGAACTG 59.019 52.381 0.00 0.00 0.00 3.16
49 50 0.402121 AGGGGGAAAGTGAGAACTGC 59.598 55.000 0.00 0.00 0.00 4.40
50 51 0.402121 GGGGGAAAGTGAGAACTGCT 59.598 55.000 0.00 0.00 0.00 4.24
51 52 1.528129 GGGGAAAGTGAGAACTGCTG 58.472 55.000 0.00 0.00 0.00 4.41
52 53 1.072331 GGGGAAAGTGAGAACTGCTGA 59.928 52.381 0.00 0.00 0.00 4.26
53 54 2.147150 GGGAAAGTGAGAACTGCTGAC 58.853 52.381 0.00 0.00 0.00 3.51
54 55 2.485479 GGGAAAGTGAGAACTGCTGACA 60.485 50.000 0.00 0.00 32.64 3.58
55 56 3.206150 GGAAAGTGAGAACTGCTGACAA 58.794 45.455 0.00 0.00 32.64 3.18
56 57 3.627577 GGAAAGTGAGAACTGCTGACAAA 59.372 43.478 0.00 0.00 32.64 2.83
57 58 4.496507 GGAAAGTGAGAACTGCTGACAAAC 60.497 45.833 0.00 0.00 32.64 2.93
58 59 3.266510 AGTGAGAACTGCTGACAAACA 57.733 42.857 0.00 0.00 32.64 2.83
59 60 2.939103 AGTGAGAACTGCTGACAAACAC 59.061 45.455 0.00 0.00 32.64 3.32
60 61 2.032178 GTGAGAACTGCTGACAAACACC 59.968 50.000 0.00 0.00 30.37 4.16
61 62 1.604278 GAGAACTGCTGACAAACACCC 59.396 52.381 0.00 0.00 0.00 4.61
62 63 0.668535 GAACTGCTGACAAACACCCC 59.331 55.000 0.00 0.00 0.00 4.95
63 64 0.755327 AACTGCTGACAAACACCCCC 60.755 55.000 0.00 0.00 0.00 5.40
64 65 1.152777 CTGCTGACAAACACCCCCA 60.153 57.895 0.00 0.00 0.00 4.96
65 66 1.152777 TGCTGACAAACACCCCCAG 60.153 57.895 0.00 0.00 0.00 4.45
66 67 1.150536 GCTGACAAACACCCCCAGA 59.849 57.895 0.00 0.00 0.00 3.86
67 68 0.467290 GCTGACAAACACCCCCAGAA 60.467 55.000 0.00 0.00 0.00 3.02
68 69 1.823250 GCTGACAAACACCCCCAGAAT 60.823 52.381 0.00 0.00 0.00 2.40
69 70 2.597455 CTGACAAACACCCCCAGAATT 58.403 47.619 0.00 0.00 0.00 2.17
70 71 2.297033 CTGACAAACACCCCCAGAATTG 59.703 50.000 0.00 0.00 0.00 2.32
71 72 1.618343 GACAAACACCCCCAGAATTGG 59.382 52.381 0.00 0.00 44.60 3.16
159 160 4.388499 CTTGTACCAGCGCCCGGT 62.388 66.667 21.50 21.50 40.73 5.28
205 210 7.338196 CCTTCTTATTTCTTCTTCTTCCCCTTC 59.662 40.741 0.00 0.00 0.00 3.46
226 231 4.411927 TCTGTGCTTCTCTTCTCTAACCT 58.588 43.478 0.00 0.00 0.00 3.50
733 744 7.875327 TTTGCCTTTCCCTTCATATAAGTAC 57.125 36.000 0.00 0.00 0.00 2.73
846 898 2.225343 TGGTTCCATTTGCTCATCCCTT 60.225 45.455 0.00 0.00 0.00 3.95
891 943 1.845809 GCAGTTGTCGGCTGAACAGG 61.846 60.000 0.00 0.00 36.12 4.00
1020 1072 6.916909 AGATATGGAGGTAGAGAAGAAGTCA 58.083 40.000 0.00 0.00 0.00 3.41
1029 1081 6.498651 AGGTAGAGAAGAAGTCAAAGGATGAA 59.501 38.462 0.00 0.00 40.50 2.57
1107 1159 8.477419 AGAAGAAGGAGATCGAGATAGAAATT 57.523 34.615 0.00 0.00 0.00 1.82
1170 1222 1.949525 TCAAAGTCTGCAGGCAAAGTC 59.050 47.619 22.50 0.08 0.00 3.01
1320 1552 0.799393 GCGAAGGCTCAGAAAAGGAC 59.201 55.000 0.00 0.00 35.83 3.85
1379 1611 5.683302 GCAAAGAGAAGGATAAAAATAGCGC 59.317 40.000 0.00 0.00 0.00 5.92
1393 1625 1.605058 TAGCGCCAAGGAGACTGGAC 61.605 60.000 2.29 0.00 42.68 4.02
1491 1729 8.917415 ATGAAAAACAAGAGAAAGACAAAGAC 57.083 30.769 0.00 0.00 0.00 3.01
1492 1730 7.881142 TGAAAAACAAGAGAAAGACAAAGACA 58.119 30.769 0.00 0.00 0.00 3.41
1493 1731 8.356657 TGAAAAACAAGAGAAAGACAAAGACAA 58.643 29.630 0.00 0.00 0.00 3.18
1494 1732 8.748380 AAAAACAAGAGAAAGACAAAGACAAG 57.252 30.769 0.00 0.00 0.00 3.16
1495 1733 6.442513 AACAAGAGAAAGACAAAGACAAGG 57.557 37.500 0.00 0.00 0.00 3.61
1496 1734 5.745227 ACAAGAGAAAGACAAAGACAAGGA 58.255 37.500 0.00 0.00 0.00 3.36
1537 1775 4.713814 AGAAGCATGTAGAAGTGGATCAGA 59.286 41.667 0.00 0.00 0.00 3.27
1580 1818 1.726853 AATGAGTCGGCGAAGAAAGG 58.273 50.000 12.92 0.00 0.00 3.11
1740 1978 9.150348 GAGAAGAAGGACAAGAAGAAAGATAAG 57.850 37.037 0.00 0.00 0.00 1.73
1841 2079 5.128008 AGGAGAAGAAGAAAGATAAGACCGG 59.872 44.000 0.00 0.00 0.00 5.28
1889 2136 2.254023 AGGATGGGGAGGAAGAAGGTAT 59.746 50.000 0.00 0.00 0.00 2.73
1983 2230 1.941734 GCTGGAGAAGATCGACGCG 60.942 63.158 3.53 3.53 0.00 6.01
2251 2504 2.408050 CTGTGTGCAGTACAGAACTCC 58.592 52.381 20.91 0.00 46.52 3.85
2312 2565 8.664211 AAACGCCCAGAAAAATAAAATAAACA 57.336 26.923 0.00 0.00 0.00 2.83
2333 2586 4.588528 ACACATTAAACATGTTTGCTCCCT 59.411 37.500 29.72 7.91 34.23 4.20
2342 2595 1.248486 GTTTGCTCCCTTGGTCCTTC 58.752 55.000 0.00 0.00 0.00 3.46
2346 2599 1.597461 CTCCCTTGGTCCTTCCGTC 59.403 63.158 0.00 0.00 39.52 4.79
2371 2624 4.761227 TGCATCTGCTAACATGTTCTTTGA 59.239 37.500 15.85 10.15 42.66 2.69
2399 2652 1.186200 TTCCGCTGCATGTCTCTACT 58.814 50.000 0.00 0.00 0.00 2.57
2400 2653 0.457443 TCCGCTGCATGTCTCTACTG 59.543 55.000 0.00 0.00 0.00 2.74
2402 2655 0.174389 CGCTGCATGTCTCTACTGGT 59.826 55.000 0.00 0.00 0.00 4.00
2403 2656 1.800655 CGCTGCATGTCTCTACTGGTC 60.801 57.143 0.00 0.00 0.00 4.02
2406 2659 1.103803 GCATGTCTCTACTGGTCGGA 58.896 55.000 0.00 0.00 0.00 4.55
2407 2660 1.202313 GCATGTCTCTACTGGTCGGAC 60.202 57.143 0.00 0.00 0.00 4.79
2408 2661 1.405821 CATGTCTCTACTGGTCGGACC 59.594 57.143 20.36 20.36 39.22 4.46
2409 2662 0.323178 TGTCTCTACTGGTCGGACCC 60.323 60.000 23.81 6.77 37.50 4.46
2410 2663 0.323178 GTCTCTACTGGTCGGACCCA 60.323 60.000 23.81 11.26 37.50 4.51
2415 2668 3.314331 CTGGTCGGACCCAGCAGT 61.314 66.667 23.81 0.00 45.19 4.40
2417 2670 3.311110 GGTCGGACCCAGCAGTGA 61.311 66.667 16.55 0.00 30.04 3.41
2418 2671 2.048127 GTCGGACCCAGCAGTGAC 60.048 66.667 0.00 0.00 0.00 3.67
2419 2672 2.523168 TCGGACCCAGCAGTGACA 60.523 61.111 0.00 0.00 0.00 3.58
2421 2674 0.613572 TCGGACCCAGCAGTGACATA 60.614 55.000 0.00 0.00 0.00 2.29
2422 2675 0.465705 CGGACCCAGCAGTGACATAT 59.534 55.000 0.00 0.00 0.00 1.78
2423 2676 1.539065 CGGACCCAGCAGTGACATATC 60.539 57.143 0.00 0.00 0.00 1.63
2424 2677 1.765314 GGACCCAGCAGTGACATATCT 59.235 52.381 0.00 0.00 0.00 1.98
2425 2678 2.484417 GGACCCAGCAGTGACATATCTG 60.484 54.545 0.00 0.00 35.12 2.90
2426 2679 2.169352 GACCCAGCAGTGACATATCTGT 59.831 50.000 0.00 0.00 38.67 3.41
2442 2695 9.296400 GACATATCTGTCTCTACTTTTTCTGTC 57.704 37.037 4.07 0.00 46.84 3.51
2443 2696 7.971168 ACATATCTGTCTCTACTTTTTCTGTCG 59.029 37.037 0.00 0.00 0.00 4.35
2444 2697 6.576662 ATCTGTCTCTACTTTTTCTGTCGA 57.423 37.500 0.00 0.00 0.00 4.20
2445 2698 6.576662 TCTGTCTCTACTTTTTCTGTCGAT 57.423 37.500 0.00 0.00 0.00 3.59
2446 2699 6.382608 TCTGTCTCTACTTTTTCTGTCGATG 58.617 40.000 0.00 0.00 0.00 3.84
2447 2700 6.016192 TCTGTCTCTACTTTTTCTGTCGATGT 60.016 38.462 0.00 0.00 0.00 3.06
2448 2701 6.513180 TGTCTCTACTTTTTCTGTCGATGTT 58.487 36.000 0.00 0.00 0.00 2.71
2450 2703 6.864165 GTCTCTACTTTTTCTGTCGATGTTCT 59.136 38.462 0.00 0.00 0.00 3.01
2451 2704 6.863645 TCTCTACTTTTTCTGTCGATGTTCTG 59.136 38.462 0.00 0.00 0.00 3.02
2454 2707 3.878086 TTTTCTGTCGATGTTCTGTGC 57.122 42.857 0.00 0.00 0.00 4.57
2456 2709 2.070262 TCTGTCGATGTTCTGTGCTG 57.930 50.000 0.00 0.00 0.00 4.41
2457 2710 1.613437 TCTGTCGATGTTCTGTGCTGA 59.387 47.619 0.00 0.00 0.00 4.26
2458 2711 2.035832 TCTGTCGATGTTCTGTGCTGAA 59.964 45.455 0.00 0.00 0.00 3.02
2459 2712 2.998670 CTGTCGATGTTCTGTGCTGAAT 59.001 45.455 0.00 0.00 0.00 2.57
2461 2714 3.187022 TGTCGATGTTCTGTGCTGAATTG 59.813 43.478 0.00 0.00 0.00 2.32
2462 2715 2.743664 TCGATGTTCTGTGCTGAATTGG 59.256 45.455 0.00 0.00 0.00 3.16
2463 2716 2.485426 CGATGTTCTGTGCTGAATTGGT 59.515 45.455 0.00 0.00 0.00 3.67
2464 2717 3.058016 CGATGTTCTGTGCTGAATTGGTT 60.058 43.478 0.00 0.00 0.00 3.67
2465 2718 4.154015 CGATGTTCTGTGCTGAATTGGTTA 59.846 41.667 0.00 0.00 0.00 2.85
2466 2719 5.633830 ATGTTCTGTGCTGAATTGGTTAG 57.366 39.130 0.00 0.00 0.00 2.34
2468 2721 5.129634 TGTTCTGTGCTGAATTGGTTAGAA 58.870 37.500 0.00 0.00 0.00 2.10
2489 2742 2.564771 CCTGCATCAGGCTAAAATCGA 58.435 47.619 0.00 0.00 45.13 3.59
2490 2743 2.289002 CCTGCATCAGGCTAAAATCGAC 59.711 50.000 0.00 0.00 45.13 4.20
2493 2746 2.219674 GCATCAGGCTAAAATCGACGAG 59.780 50.000 3.01 0.00 40.25 4.18
2495 2748 1.476891 TCAGGCTAAAATCGACGAGCT 59.523 47.619 3.01 0.00 35.23 4.09
2531 3011 4.286808 TCTGATCTTCACTGATTGACCCAA 59.713 41.667 0.00 0.00 32.26 4.12
2588 3068 4.679662 TCTACCTATGTTCTGCGCTTTAC 58.320 43.478 9.73 4.07 0.00 2.01
2619 3101 3.084039 GAGACCTGGCATTGTGATGAAA 58.916 45.455 0.00 0.00 35.16 2.69
2620 3102 3.499338 AGACCTGGCATTGTGATGAAAA 58.501 40.909 0.00 0.00 35.16 2.29
2621 3103 3.896888 AGACCTGGCATTGTGATGAAAAA 59.103 39.130 0.00 0.00 35.16 1.94
2623 3105 5.012354 AGACCTGGCATTGTGATGAAAAATT 59.988 36.000 0.00 0.00 35.16 1.82
2624 3106 5.240121 ACCTGGCATTGTGATGAAAAATTC 58.760 37.500 0.00 0.00 35.16 2.17
2626 3108 5.935789 CCTGGCATTGTGATGAAAAATTCTT 59.064 36.000 0.00 0.00 35.16 2.52
2627 3109 6.428771 CCTGGCATTGTGATGAAAAATTCTTT 59.571 34.615 0.00 0.00 35.16 2.52
2628 3110 7.040961 CCTGGCATTGTGATGAAAAATTCTTTT 60.041 33.333 0.00 0.00 37.46 2.27
2629 3111 8.223177 TGGCATTGTGATGAAAAATTCTTTTT 57.777 26.923 0.00 0.00 44.93 1.94
2657 3139 7.339212 TCTTTCTTTCTTTCTTGACCATCACAA 59.661 33.333 0.00 0.00 0.00 3.33
2697 3179 4.879197 TGCACCTCCTAGTATCATGATG 57.121 45.455 18.72 0.89 0.00 3.07
2713 3195 6.775939 TCATGATGTTTTCTATGATCTCGC 57.224 37.500 0.00 0.00 0.00 5.03
2730 3212 2.396955 GCTGCGCTGCATCAGTCTT 61.397 57.895 31.12 0.00 38.13 3.01
2750 3234 9.216117 CAGTCTTAATAAAATTATACTCCCCCG 57.784 37.037 0.00 0.00 0.00 5.73
2754 3238 9.358406 CTTAATAAAATTATACTCCCCCGGTTT 57.642 33.333 0.00 0.00 0.00 3.27
2815 3299 5.178067 GGATGTTTTGGCAGTTCAATTTCAG 59.822 40.000 0.00 0.00 0.00 3.02
2819 3303 4.503741 TTGGCAGTTCAATTTCAGCTAC 57.496 40.909 0.00 0.00 0.00 3.58
2820 3304 2.819608 TGGCAGTTCAATTTCAGCTACC 59.180 45.455 0.00 0.00 0.00 3.18
2821 3305 2.819608 GGCAGTTCAATTTCAGCTACCA 59.180 45.455 0.00 0.00 0.00 3.25
2822 3306 3.255642 GGCAGTTCAATTTCAGCTACCAA 59.744 43.478 0.00 0.00 0.00 3.67
2823 3307 4.261994 GGCAGTTCAATTTCAGCTACCAAA 60.262 41.667 0.00 0.00 0.00 3.28
2824 3308 5.288804 GCAGTTCAATTTCAGCTACCAAAA 58.711 37.500 0.00 0.00 0.00 2.44
2825 3309 5.175673 GCAGTTCAATTTCAGCTACCAAAAC 59.824 40.000 0.00 0.00 0.00 2.43
2826 3310 5.399301 CAGTTCAATTTCAGCTACCAAAACG 59.601 40.000 0.00 0.00 0.00 3.60
2827 3311 5.067283 AGTTCAATTTCAGCTACCAAAACGT 59.933 36.000 0.00 0.00 0.00 3.99
2828 3312 5.103290 TCAATTTCAGCTACCAAAACGTC 57.897 39.130 0.00 0.00 0.00 4.34
2829 3313 4.819630 TCAATTTCAGCTACCAAAACGTCT 59.180 37.500 0.00 0.00 0.00 4.18
2830 3314 5.298276 TCAATTTCAGCTACCAAAACGTCTT 59.702 36.000 0.00 0.00 0.00 3.01
2831 3315 6.483974 TCAATTTCAGCTACCAAAACGTCTTA 59.516 34.615 0.00 0.00 0.00 2.10
2832 3316 7.174253 TCAATTTCAGCTACCAAAACGTCTTAT 59.826 33.333 0.00 0.00 0.00 1.73
2833 3317 8.447833 CAATTTCAGCTACCAAAACGTCTTATA 58.552 33.333 0.00 0.00 0.00 0.98
2834 3318 8.732746 ATTTCAGCTACCAAAACGTCTTATAT 57.267 30.769 0.00 0.00 0.00 0.86
2835 3319 8.556213 TTTCAGCTACCAAAACGTCTTATATT 57.444 30.769 0.00 0.00 0.00 1.28
2836 3320 9.656040 TTTCAGCTACCAAAACGTCTTATATTA 57.344 29.630 0.00 0.00 0.00 0.98
2837 3321 8.638685 TCAGCTACCAAAACGTCTTATATTAC 57.361 34.615 0.00 0.00 0.00 1.89
2838 3322 7.707893 TCAGCTACCAAAACGTCTTATATTACC 59.292 37.037 0.00 0.00 0.00 2.85
2839 3323 6.698766 AGCTACCAAAACGTCTTATATTACCG 59.301 38.462 0.00 0.00 0.00 4.02
2840 3324 6.697019 GCTACCAAAACGTCTTATATTACCGA 59.303 38.462 0.00 0.00 0.00 4.69
2841 3325 7.222611 GCTACCAAAACGTCTTATATTACCGAA 59.777 37.037 0.00 0.00 0.00 4.30
2842 3326 7.903995 ACCAAAACGTCTTATATTACCGAAA 57.096 32.000 0.00 0.00 0.00 3.46
2843 3327 8.321650 ACCAAAACGTCTTATATTACCGAAAA 57.678 30.769 0.00 0.00 0.00 2.29
2844 3328 8.782144 ACCAAAACGTCTTATATTACCGAAAAA 58.218 29.630 0.00 0.00 0.00 1.94
2845 3329 9.269415 CCAAAACGTCTTATATTACCGAAAAAG 57.731 33.333 0.00 0.00 0.00 2.27
2846 3330 9.269415 CAAAACGTCTTATATTACCGAAAAAGG 57.731 33.333 0.00 0.00 37.30 3.11
2847 3331 6.594284 ACGTCTTATATTACCGAAAAAGGC 57.406 37.500 0.00 0.00 33.69 4.35
2848 3332 6.343703 ACGTCTTATATTACCGAAAAAGGCT 58.656 36.000 0.00 0.00 33.69 4.58
2849 3333 6.820152 ACGTCTTATATTACCGAAAAAGGCTT 59.180 34.615 0.00 0.00 33.69 4.35
2850 3334 7.335171 ACGTCTTATATTACCGAAAAAGGCTTT 59.665 33.333 6.68 6.68 33.69 3.51
2851 3335 7.849515 CGTCTTATATTACCGAAAAAGGCTTTC 59.150 37.037 13.76 0.41 33.69 2.62
2853 3337 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
2869 3353 6.484818 GCTTTCGCCCCGTTTTATATATAA 57.515 37.500 0.81 0.81 0.00 0.98
2870 3354 6.901265 GCTTTCGCCCCGTTTTATATATAAA 58.099 36.000 12.90 12.90 0.00 1.40
2871 3355 7.019418 GCTTTCGCCCCGTTTTATATATAAAG 58.981 38.462 15.65 7.49 34.13 1.85
2872 3356 6.484818 TTCGCCCCGTTTTATATATAAAGC 57.515 37.500 17.54 17.54 34.13 3.51
2873 3357 5.549347 TCGCCCCGTTTTATATATAAAGCA 58.451 37.500 23.58 8.55 34.42 3.91
2874 3358 5.409214 TCGCCCCGTTTTATATATAAAGCAC 59.591 40.000 23.58 16.43 34.42 4.40
2875 3359 5.391203 CGCCCCGTTTTATATATAAAGCACC 60.391 44.000 23.58 12.12 34.42 5.01
2876 3360 5.391203 GCCCCGTTTTATATATAAAGCACCG 60.391 44.000 23.58 18.86 34.42 4.94
2877 3361 5.933463 CCCCGTTTTATATATAAAGCACCGA 59.067 40.000 23.58 6.83 34.42 4.69
2878 3362 6.596497 CCCCGTTTTATATATAAAGCACCGAT 59.404 38.462 23.58 0.00 34.42 4.18
2879 3363 7.201582 CCCCGTTTTATATATAAAGCACCGATC 60.202 40.741 23.58 8.22 34.42 3.69
2880 3364 7.201582 CCCGTTTTATATATAAAGCACCGATCC 60.202 40.741 23.58 5.83 34.42 3.36
2881 3365 7.332430 CCGTTTTATATATAAAGCACCGATCCA 59.668 37.037 23.58 4.56 34.42 3.41
2882 3366 8.879759 CGTTTTATATATAAAGCACCGATCCAT 58.120 33.333 23.58 0.00 34.42 3.41
2886 3370 9.542462 TTATATATAAAGCACCGATCCATAAGC 57.458 33.333 2.56 0.00 0.00 3.09
2887 3371 2.418368 AAAGCACCGATCCATAAGCA 57.582 45.000 0.00 0.00 0.00 3.91
2888 3372 2.418368 AAGCACCGATCCATAAGCAA 57.582 45.000 0.00 0.00 0.00 3.91
2889 3373 1.668419 AGCACCGATCCATAAGCAAC 58.332 50.000 0.00 0.00 0.00 4.17
2890 3374 1.065491 AGCACCGATCCATAAGCAACA 60.065 47.619 0.00 0.00 0.00 3.33
2891 3375 1.064060 GCACCGATCCATAAGCAACAC 59.936 52.381 0.00 0.00 0.00 3.32
2892 3376 1.327460 CACCGATCCATAAGCAACACG 59.673 52.381 0.00 0.00 0.00 4.49
2893 3377 1.206132 ACCGATCCATAAGCAACACGA 59.794 47.619 0.00 0.00 0.00 4.35
2894 3378 2.158957 ACCGATCCATAAGCAACACGAT 60.159 45.455 0.00 0.00 0.00 3.73
2895 3379 3.069016 ACCGATCCATAAGCAACACGATA 59.931 43.478 0.00 0.00 0.00 2.92
2896 3380 3.428870 CCGATCCATAAGCAACACGATAC 59.571 47.826 0.00 0.00 0.00 2.24
2897 3381 4.048504 CGATCCATAAGCAACACGATACA 58.951 43.478 0.00 0.00 0.00 2.29
2898 3382 4.506288 CGATCCATAAGCAACACGATACAA 59.494 41.667 0.00 0.00 0.00 2.41
2899 3383 5.006261 CGATCCATAAGCAACACGATACAAA 59.994 40.000 0.00 0.00 0.00 2.83
2900 3384 5.539582 TCCATAAGCAACACGATACAAAC 57.460 39.130 0.00 0.00 0.00 2.93
2901 3385 5.242434 TCCATAAGCAACACGATACAAACT 58.758 37.500 0.00 0.00 0.00 2.66
2902 3386 5.350365 TCCATAAGCAACACGATACAAACTC 59.650 40.000 0.00 0.00 0.00 3.01
2903 3387 5.121611 CCATAAGCAACACGATACAAACTCA 59.878 40.000 0.00 0.00 0.00 3.41
2904 3388 4.468095 AAGCAACACGATACAAACTCAC 57.532 40.909 0.00 0.00 0.00 3.51
2905 3389 2.475111 AGCAACACGATACAAACTCACG 59.525 45.455 0.00 0.00 0.00 4.35
2906 3390 2.822827 CAACACGATACAAACTCACGC 58.177 47.619 0.00 0.00 0.00 5.34
2907 3391 1.425412 ACACGATACAAACTCACGCC 58.575 50.000 0.00 0.00 0.00 5.68
2908 3392 1.269883 ACACGATACAAACTCACGCCA 60.270 47.619 0.00 0.00 0.00 5.69
2909 3393 1.126113 CACGATACAAACTCACGCCAC 59.874 52.381 0.00 0.00 0.00 5.01
2910 3394 0.719465 CGATACAAACTCACGCCACC 59.281 55.000 0.00 0.00 0.00 4.61
2911 3395 1.803334 GATACAAACTCACGCCACCA 58.197 50.000 0.00 0.00 0.00 4.17
2912 3396 1.463444 GATACAAACTCACGCCACCAC 59.537 52.381 0.00 0.00 0.00 4.16
2913 3397 0.533308 TACAAACTCACGCCACCACC 60.533 55.000 0.00 0.00 0.00 4.61
2914 3398 2.590575 AAACTCACGCCACCACCG 60.591 61.111 0.00 0.00 0.00 4.94
2922 3406 3.737172 GCCACCACCGCACATGAC 61.737 66.667 0.00 0.00 0.00 3.06
2923 3407 2.281414 CCACCACCGCACATGACA 60.281 61.111 0.00 0.00 0.00 3.58
2924 3408 2.616330 CCACCACCGCACATGACAC 61.616 63.158 0.00 0.00 0.00 3.67
2925 3409 1.891449 CACCACCGCACATGACACA 60.891 57.895 0.00 0.00 0.00 3.72
2926 3410 1.891919 ACCACCGCACATGACACAC 60.892 57.895 0.00 0.00 0.00 3.82
2927 3411 1.891449 CCACCGCACATGACACACA 60.891 57.895 0.00 0.00 0.00 3.72
2928 3412 1.279539 CACCGCACATGACACACAC 59.720 57.895 0.00 0.00 0.00 3.82
2929 3413 1.153269 ACCGCACATGACACACACA 60.153 52.632 0.00 0.00 0.00 3.72
2930 3414 1.279539 CCGCACATGACACACACAC 59.720 57.895 0.00 0.00 0.00 3.82
2931 3415 1.159713 CCGCACATGACACACACACT 61.160 55.000 0.00 0.00 0.00 3.55
2932 3416 0.041926 CGCACATGACACACACACTG 60.042 55.000 0.00 0.00 0.00 3.66
2933 3417 1.298602 GCACATGACACACACACTGA 58.701 50.000 0.00 0.00 0.00 3.41
2934 3418 1.670295 GCACATGACACACACACTGAA 59.330 47.619 0.00 0.00 0.00 3.02
2935 3419 2.286595 GCACATGACACACACACTGAAG 60.287 50.000 0.00 0.00 0.00 3.02
2936 3420 2.288729 CACATGACACACACACTGAAGG 59.711 50.000 0.00 0.00 0.00 3.46
2937 3421 1.265095 CATGACACACACACTGAAGGC 59.735 52.381 0.00 0.00 0.00 4.35
2938 3422 0.251634 TGACACACACACTGAAGGCA 59.748 50.000 0.00 0.00 0.00 4.75
2939 3423 1.339535 TGACACACACACTGAAGGCAA 60.340 47.619 0.00 0.00 0.00 4.52
2940 3424 1.331756 GACACACACACTGAAGGCAAG 59.668 52.381 0.00 0.00 0.00 4.01
2941 3425 1.065491 ACACACACACTGAAGGCAAGA 60.065 47.619 0.00 0.00 0.00 3.02
2942 3426 2.224606 CACACACACTGAAGGCAAGAT 58.775 47.619 0.00 0.00 0.00 2.40
2943 3427 3.181455 ACACACACACTGAAGGCAAGATA 60.181 43.478 0.00 0.00 0.00 1.98
2944 3428 3.187227 CACACACACTGAAGGCAAGATAC 59.813 47.826 0.00 0.00 0.00 2.24
2945 3429 3.181455 ACACACACTGAAGGCAAGATACA 60.181 43.478 0.00 0.00 0.00 2.29
2946 3430 3.814842 CACACACTGAAGGCAAGATACAA 59.185 43.478 0.00 0.00 0.00 2.41
2947 3431 4.275689 CACACACTGAAGGCAAGATACAAA 59.724 41.667 0.00 0.00 0.00 2.83
2948 3432 4.516698 ACACACTGAAGGCAAGATACAAAG 59.483 41.667 0.00 0.00 0.00 2.77
2949 3433 4.074970 ACACTGAAGGCAAGATACAAAGG 58.925 43.478 0.00 0.00 0.00 3.11
2950 3434 4.074970 CACTGAAGGCAAGATACAAAGGT 58.925 43.478 0.00 0.00 0.00 3.50
2951 3435 4.074970 ACTGAAGGCAAGATACAAAGGTG 58.925 43.478 0.00 0.00 0.00 4.00
2952 3436 2.819608 TGAAGGCAAGATACAAAGGTGC 59.180 45.455 0.00 0.00 34.42 5.01
2954 3438 0.451783 GGCAAGATACAAAGGTGCCG 59.548 55.000 0.00 0.00 44.82 5.69
2955 3439 1.448985 GCAAGATACAAAGGTGCCGA 58.551 50.000 0.00 0.00 0.00 5.54
2956 3440 1.398390 GCAAGATACAAAGGTGCCGAG 59.602 52.381 0.00 0.00 0.00 4.63
2957 3441 1.398390 CAAGATACAAAGGTGCCGAGC 59.602 52.381 0.00 0.00 0.00 5.03
2958 3442 0.613260 AGATACAAAGGTGCCGAGCA 59.387 50.000 0.00 0.00 35.60 4.26
2967 3451 4.927782 TGCCGAGCACCACCACAC 62.928 66.667 0.00 0.00 31.71 3.82
2969 3453 4.248842 CCGAGCACCACCACACCA 62.249 66.667 0.00 0.00 0.00 4.17
2970 3454 2.032528 CGAGCACCACCACACCAT 59.967 61.111 0.00 0.00 0.00 3.55
2971 3455 2.034879 CGAGCACCACCACACCATC 61.035 63.158 0.00 0.00 0.00 3.51
2972 3456 1.675641 GAGCACCACCACACCATCC 60.676 63.158 0.00 0.00 0.00 3.51
2973 3457 2.676471 GCACCACCACACCATCCC 60.676 66.667 0.00 0.00 0.00 3.85
2974 3458 2.842801 CACCACCACACCATCCCA 59.157 61.111 0.00 0.00 0.00 4.37
2975 3459 1.152599 CACCACCACACCATCCCAA 59.847 57.895 0.00 0.00 0.00 4.12
2976 3460 1.152830 ACCACCACACCATCCCAAC 59.847 57.895 0.00 0.00 0.00 3.77
2977 3461 1.971167 CCACCACACCATCCCAACG 60.971 63.158 0.00 0.00 0.00 4.10
2978 3462 1.072332 CACCACACCATCCCAACGA 59.928 57.895 0.00 0.00 0.00 3.85
2979 3463 1.072505 ACCACACCATCCCAACGAC 59.927 57.895 0.00 0.00 0.00 4.34
2980 3464 1.374947 CCACACCATCCCAACGACT 59.625 57.895 0.00 0.00 0.00 4.18
2981 3465 0.611200 CCACACCATCCCAACGACTA 59.389 55.000 0.00 0.00 0.00 2.59
2982 3466 1.674817 CCACACCATCCCAACGACTAC 60.675 57.143 0.00 0.00 0.00 2.73
2983 3467 0.611714 ACACCATCCCAACGACTACC 59.388 55.000 0.00 0.00 0.00 3.18
2984 3468 0.611200 CACCATCCCAACGACTACCA 59.389 55.000 0.00 0.00 0.00 3.25
2985 3469 1.002659 CACCATCCCAACGACTACCAA 59.997 52.381 0.00 0.00 0.00 3.67
2986 3470 1.278127 ACCATCCCAACGACTACCAAG 59.722 52.381 0.00 0.00 0.00 3.61
2987 3471 1.369625 CATCCCAACGACTACCAAGC 58.630 55.000 0.00 0.00 0.00 4.01
2988 3472 0.252197 ATCCCAACGACTACCAAGCC 59.748 55.000 0.00 0.00 0.00 4.35
2989 3473 1.122632 TCCCAACGACTACCAAGCCA 61.123 55.000 0.00 0.00 0.00 4.75
2990 3474 0.035439 CCCAACGACTACCAAGCCAT 60.035 55.000 0.00 0.00 0.00 4.40
2991 3475 1.613255 CCCAACGACTACCAAGCCATT 60.613 52.381 0.00 0.00 0.00 3.16
2992 3476 2.159382 CCAACGACTACCAAGCCATTT 58.841 47.619 0.00 0.00 0.00 2.32
2993 3477 2.095263 CCAACGACTACCAAGCCATTTG 60.095 50.000 0.00 0.00 36.50 2.32
3012 3496 3.042059 TGGTAGAACCAGGGATCCTAC 57.958 52.381 12.58 4.13 44.79 3.18
3013 3497 2.327373 GGTAGAACCAGGGATCCTACC 58.673 57.143 12.58 9.88 38.42 3.18
3014 3498 1.962100 GTAGAACCAGGGATCCTACCG 59.038 57.143 12.58 0.00 29.64 4.02
3015 3499 0.398664 AGAACCAGGGATCCTACCGG 60.399 60.000 12.58 0.00 29.64 5.28
3016 3500 0.398098 GAACCAGGGATCCTACCGGA 60.398 60.000 9.46 0.00 45.16 5.14
3017 3501 0.690077 AACCAGGGATCCTACCGGAC 60.690 60.000 9.46 0.00 43.51 4.79
3018 3502 1.837499 CCAGGGATCCTACCGGACC 60.837 68.421 9.46 1.06 43.51 4.46
3019 3503 1.233369 CAGGGATCCTACCGGACCT 59.767 63.158 9.46 0.36 43.51 3.85
3020 3504 1.115930 CAGGGATCCTACCGGACCTG 61.116 65.000 9.46 9.92 43.29 4.00
3021 3505 2.508751 GGGATCCTACCGGACCTGC 61.509 68.421 9.46 0.00 43.51 4.85
3022 3506 1.457831 GGATCCTACCGGACCTGCT 60.458 63.158 9.46 0.00 43.51 4.24
3023 3507 1.465200 GGATCCTACCGGACCTGCTC 61.465 65.000 9.46 0.00 43.51 4.26
3024 3508 1.457831 ATCCTACCGGACCTGCTCC 60.458 63.158 9.46 0.00 43.51 4.70
3043 3527 1.856629 CGTAGGTTGTAGGGGAAGGA 58.143 55.000 0.00 0.00 0.00 3.36
3044 3528 2.395619 CGTAGGTTGTAGGGGAAGGAT 58.604 52.381 0.00 0.00 0.00 3.24
3045 3529 2.102588 CGTAGGTTGTAGGGGAAGGATG 59.897 54.545 0.00 0.00 0.00 3.51
3046 3530 1.596496 AGGTTGTAGGGGAAGGATGG 58.404 55.000 0.00 0.00 0.00 3.51
3047 3531 1.082194 AGGTTGTAGGGGAAGGATGGA 59.918 52.381 0.00 0.00 0.00 3.41
3048 3532 1.490910 GGTTGTAGGGGAAGGATGGAG 59.509 57.143 0.00 0.00 0.00 3.86
3049 3533 1.134068 GTTGTAGGGGAAGGATGGAGC 60.134 57.143 0.00 0.00 0.00 4.70
3050 3534 1.048724 TGTAGGGGAAGGATGGAGCG 61.049 60.000 0.00 0.00 0.00 5.03
3051 3535 1.459539 TAGGGGAAGGATGGAGCGG 60.460 63.158 0.00 0.00 0.00 5.52
3052 3536 2.965226 TAGGGGAAGGATGGAGCGGG 62.965 65.000 0.00 0.00 0.00 6.13
3053 3537 3.878667 GGGAAGGATGGAGCGGGG 61.879 72.222 0.00 0.00 0.00 5.73
3054 3538 4.570874 GGAAGGATGGAGCGGGGC 62.571 72.222 0.00 0.00 0.00 5.80
3055 3539 4.918201 GAAGGATGGAGCGGGGCG 62.918 72.222 0.00 0.00 0.00 6.13
3104 3588 2.336809 GCCATCGCGTAGGAGGAG 59.663 66.667 20.68 0.00 0.00 3.69
3105 3589 3.043419 CCATCGCGTAGGAGGAGG 58.957 66.667 5.77 0.00 0.00 4.30
3106 3590 1.528542 CCATCGCGTAGGAGGAGGA 60.529 63.158 5.77 0.00 0.00 3.71
3107 3591 0.896019 CCATCGCGTAGGAGGAGGAT 60.896 60.000 5.77 0.00 0.00 3.24
3108 3592 0.242286 CATCGCGTAGGAGGAGGATG 59.758 60.000 5.77 0.00 0.00 3.51
3109 3593 0.896019 ATCGCGTAGGAGGAGGATGG 60.896 60.000 5.77 0.00 0.00 3.51
3110 3594 2.737830 GCGTAGGAGGAGGATGGC 59.262 66.667 0.00 0.00 0.00 4.40
3111 3595 3.043419 CGTAGGAGGAGGATGGCG 58.957 66.667 0.00 0.00 0.00 5.69
3112 3596 2.565645 CGTAGGAGGAGGATGGCGG 61.566 68.421 0.00 0.00 0.00 6.13
3113 3597 2.524394 TAGGAGGAGGATGGCGGC 60.524 66.667 0.00 0.00 0.00 6.53
3114 3598 3.389139 TAGGAGGAGGATGGCGGCA 62.389 63.158 16.34 16.34 0.00 5.69
3115 3599 4.247380 GGAGGAGGATGGCGGCAG 62.247 72.222 19.29 0.00 0.00 4.85
3116 3600 4.925861 GAGGAGGATGGCGGCAGC 62.926 72.222 20.13 20.13 44.18 5.25
3126 3610 4.785453 GCGGCAGCAGCTAGGGTT 62.785 66.667 10.66 0.00 44.35 4.11
3127 3611 2.900273 CGGCAGCAGCTAGGGTTA 59.100 61.111 0.00 0.00 41.70 2.85
3128 3612 1.227380 CGGCAGCAGCTAGGGTTAG 60.227 63.158 0.00 0.00 41.70 2.34
3129 3613 1.676678 CGGCAGCAGCTAGGGTTAGA 61.677 60.000 0.00 0.00 41.70 2.10
3130 3614 0.105778 GGCAGCAGCTAGGGTTAGAG 59.894 60.000 0.00 0.00 41.70 2.43
3131 3615 0.105778 GCAGCAGCTAGGGTTAGAGG 59.894 60.000 0.00 0.00 37.91 3.69
3132 3616 0.105778 CAGCAGCTAGGGTTAGAGGC 59.894 60.000 0.00 0.00 0.00 4.70
3133 3617 1.068250 GCAGCTAGGGTTAGAGGCG 59.932 63.158 0.00 0.00 0.00 5.52
3134 3618 1.742768 CAGCTAGGGTTAGAGGCGG 59.257 63.158 0.00 0.00 0.00 6.13
3135 3619 2.134933 AGCTAGGGTTAGAGGCGGC 61.135 63.158 0.00 0.00 0.00 6.53
3136 3620 2.134933 GCTAGGGTTAGAGGCGGCT 61.135 63.158 13.09 13.09 0.00 5.52
3137 3621 0.826672 GCTAGGGTTAGAGGCGGCTA 60.827 60.000 13.24 0.00 0.00 3.93
3138 3622 1.249407 CTAGGGTTAGAGGCGGCTAG 58.751 60.000 13.24 0.00 0.00 3.42
3139 3623 0.178970 TAGGGTTAGAGGCGGCTAGG 60.179 60.000 13.24 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.647229 ACATGATGAGTATGACATGTTGAGT 58.353 36.000 0.00 0.00 46.98 3.41
6 7 4.874970 TCGGACATGATGAGTATGACATG 58.125 43.478 0.00 0.00 43.56 3.21
7 8 4.829492 TCTCGGACATGATGAGTATGACAT 59.171 41.667 0.00 0.00 0.00 3.06
8 9 4.207165 TCTCGGACATGATGAGTATGACA 58.793 43.478 0.00 0.00 0.00 3.58
9 10 4.320861 CCTCTCGGACATGATGAGTATGAC 60.321 50.000 0.00 0.00 0.00 3.06
10 11 3.823304 CCTCTCGGACATGATGAGTATGA 59.177 47.826 0.00 0.00 0.00 2.15
11 12 3.056962 CCCTCTCGGACATGATGAGTATG 60.057 52.174 0.00 0.00 0.00 2.39
12 13 3.161067 CCCTCTCGGACATGATGAGTAT 58.839 50.000 0.00 0.00 0.00 2.12
13 14 2.587522 CCCTCTCGGACATGATGAGTA 58.412 52.381 0.00 0.00 0.00 2.59
14 15 1.407936 CCCTCTCGGACATGATGAGT 58.592 55.000 0.00 0.00 0.00 3.41
15 16 0.678395 CCCCTCTCGGACATGATGAG 59.322 60.000 0.00 3.44 0.00 2.90
16 17 0.760567 CCCCCTCTCGGACATGATGA 60.761 60.000 0.00 0.00 0.00 2.92
17 18 0.760567 TCCCCCTCTCGGACATGATG 60.761 60.000 0.00 0.00 0.00 3.07
18 19 0.031111 TTCCCCCTCTCGGACATGAT 60.031 55.000 0.00 0.00 0.00 2.45
19 20 0.252513 TTTCCCCCTCTCGGACATGA 60.253 55.000 0.00 0.00 0.00 3.07
20 21 0.179000 CTTTCCCCCTCTCGGACATG 59.821 60.000 0.00 0.00 0.00 3.21
21 22 0.252742 ACTTTCCCCCTCTCGGACAT 60.253 55.000 0.00 0.00 0.00 3.06
22 23 1.157751 ACTTTCCCCCTCTCGGACA 59.842 57.895 0.00 0.00 0.00 4.02
23 24 0.903454 TCACTTTCCCCCTCTCGGAC 60.903 60.000 0.00 0.00 0.00 4.79
24 25 0.614979 CTCACTTTCCCCCTCTCGGA 60.615 60.000 0.00 0.00 0.00 4.55
25 26 0.614979 TCTCACTTTCCCCCTCTCGG 60.615 60.000 0.00 0.00 0.00 4.63
26 27 1.066787 GTTCTCACTTTCCCCCTCTCG 60.067 57.143 0.00 0.00 0.00 4.04
27 28 2.027653 CAGTTCTCACTTTCCCCCTCTC 60.028 54.545 0.00 0.00 0.00 3.20
28 29 1.981495 CAGTTCTCACTTTCCCCCTCT 59.019 52.381 0.00 0.00 0.00 3.69
29 30 1.611936 GCAGTTCTCACTTTCCCCCTC 60.612 57.143 0.00 0.00 0.00 4.30
30 31 0.402121 GCAGTTCTCACTTTCCCCCT 59.598 55.000 0.00 0.00 0.00 4.79
31 32 0.402121 AGCAGTTCTCACTTTCCCCC 59.598 55.000 0.00 0.00 0.00 5.40
32 33 1.072331 TCAGCAGTTCTCACTTTCCCC 59.928 52.381 0.00 0.00 0.00 4.81
33 34 2.147150 GTCAGCAGTTCTCACTTTCCC 58.853 52.381 0.00 0.00 0.00 3.97
34 35 2.838736 TGTCAGCAGTTCTCACTTTCC 58.161 47.619 0.00 0.00 0.00 3.13
35 36 4.094887 TGTTTGTCAGCAGTTCTCACTTTC 59.905 41.667 0.00 0.00 0.00 2.62
36 37 4.009675 TGTTTGTCAGCAGTTCTCACTTT 58.990 39.130 0.00 0.00 0.00 2.66
37 38 3.375299 GTGTTTGTCAGCAGTTCTCACTT 59.625 43.478 0.00 0.00 0.00 3.16
38 39 2.939103 GTGTTTGTCAGCAGTTCTCACT 59.061 45.455 0.00 0.00 0.00 3.41
39 40 2.032178 GGTGTTTGTCAGCAGTTCTCAC 59.968 50.000 0.00 0.00 43.22 3.51
40 41 2.288666 GGTGTTTGTCAGCAGTTCTCA 58.711 47.619 0.00 0.00 43.22 3.27
41 42 1.604278 GGGTGTTTGTCAGCAGTTCTC 59.396 52.381 0.00 0.00 45.23 2.87
42 43 1.680338 GGGTGTTTGTCAGCAGTTCT 58.320 50.000 0.00 0.00 45.23 3.01
43 44 0.668535 GGGGTGTTTGTCAGCAGTTC 59.331 55.000 0.00 0.00 45.23 3.01
44 45 0.755327 GGGGGTGTTTGTCAGCAGTT 60.755 55.000 0.00 0.00 45.23 3.16
45 46 1.152756 GGGGGTGTTTGTCAGCAGT 60.153 57.895 0.00 0.00 45.23 4.40
46 47 1.152777 TGGGGGTGTTTGTCAGCAG 60.153 57.895 0.00 0.00 45.23 4.24
47 48 1.152777 CTGGGGGTGTTTGTCAGCA 60.153 57.895 0.00 0.00 45.23 4.41
48 49 0.467290 TTCTGGGGGTGTTTGTCAGC 60.467 55.000 0.00 0.00 43.02 4.26
49 50 2.292828 ATTCTGGGGGTGTTTGTCAG 57.707 50.000 0.00 0.00 0.00 3.51
50 51 2.315176 CAATTCTGGGGGTGTTTGTCA 58.685 47.619 0.00 0.00 0.00 3.58
51 52 1.618343 CCAATTCTGGGGGTGTTTGTC 59.382 52.381 0.00 0.00 39.30 3.18
52 53 1.715785 CCAATTCTGGGGGTGTTTGT 58.284 50.000 0.00 0.00 39.30 2.83
62 63 1.580942 CACGCACACCCAATTCTGG 59.419 57.895 0.00 0.00 43.10 3.86
63 64 1.081242 GCACGCACACCCAATTCTG 60.081 57.895 0.00 0.00 0.00 3.02
64 65 2.268076 GGCACGCACACCCAATTCT 61.268 57.895 0.00 0.00 0.00 2.40
65 66 2.258286 GGCACGCACACCCAATTC 59.742 61.111 0.00 0.00 0.00 2.17
66 67 2.520500 TGGCACGCACACCCAATT 60.521 55.556 0.00 0.00 0.00 2.32
67 68 3.294493 GTGGCACGCACACCCAAT 61.294 61.111 0.00 0.00 39.55 3.16
135 136 0.605589 GCGCTGGTACAAGGGAAAGT 60.606 55.000 18.13 0.00 38.70 2.66
159 160 1.725557 GAGTGGAGATCAGCCGCGTA 61.726 60.000 4.92 0.00 40.77 4.42
205 210 4.799564 AGGTTAGAGAAGAGAAGCACAG 57.200 45.455 0.00 0.00 0.00 3.66
846 898 2.364324 AGGCTATCGGCGATTTCAGTTA 59.636 45.455 28.93 6.91 42.94 2.24
1107 1159 1.227823 CTCCACAACCTTGGCGTCA 60.228 57.895 0.00 0.00 36.48 4.35
1320 1552 2.597455 TCTTTCCCTTTCTTGGCCTTG 58.403 47.619 3.32 0.00 0.00 3.61
1379 1611 1.209019 CATCAGGTCCAGTCTCCTTGG 59.791 57.143 0.00 0.00 37.04 3.61
1393 1625 2.481854 GCTACTGTCATCTGCATCAGG 58.518 52.381 0.00 0.00 32.92 3.86
1491 1729 4.645535 TCTTGTTCTCATGTTCCTCCTTG 58.354 43.478 0.00 0.00 0.00 3.61
1492 1730 4.982241 TCTTGTTCTCATGTTCCTCCTT 57.018 40.909 0.00 0.00 0.00 3.36
1493 1731 4.594920 TCTTCTTGTTCTCATGTTCCTCCT 59.405 41.667 0.00 0.00 0.00 3.69
1494 1732 4.899502 TCTTCTTGTTCTCATGTTCCTCC 58.100 43.478 0.00 0.00 0.00 4.30
1495 1733 5.106752 GCTTCTTCTTGTTCTCATGTTCCTC 60.107 44.000 0.00 0.00 0.00 3.71
1496 1734 4.759183 GCTTCTTCTTGTTCTCATGTTCCT 59.241 41.667 0.00 0.00 0.00 3.36
1537 1775 9.678260 ATTATCTTGTAGCTTGATTTCTCTTGT 57.322 29.630 0.00 0.00 0.00 3.16
1841 2079 8.406297 TCTTTTTCTTCTTAGTTTCTTCCTTGC 58.594 33.333 0.00 0.00 0.00 4.01
1889 2136 8.792830 TTTCTTCTTCTCTTTGTCTTTCTTCA 57.207 30.769 0.00 0.00 0.00 3.02
1983 2230 5.479306 TCAGCATGTAGGTCTTGTAACTTC 58.521 41.667 0.00 0.00 37.40 3.01
2312 2565 5.511202 CCAAGGGAGCAAACATGTTTAATGT 60.511 40.000 22.87 8.34 0.00 2.71
2333 2586 0.327924 ATGCATGACGGAAGGACCAA 59.672 50.000 0.00 0.00 38.90 3.67
2342 2595 1.655484 TGTTAGCAGATGCATGACGG 58.345 50.000 2.46 0.00 45.16 4.79
2346 2599 4.895224 AGAACATGTTAGCAGATGCATG 57.105 40.909 11.95 4.61 45.16 4.06
2371 2624 0.682209 ATGCAGCGGAATTCCAGCTT 60.682 50.000 29.28 21.30 41.46 3.74
2399 2652 3.625897 CACTGCTGGGTCCGACCA 61.626 66.667 19.43 4.89 41.02 4.02
2400 2653 3.311110 TCACTGCTGGGTCCGACC 61.311 66.667 9.30 9.30 37.60 4.79
2402 2655 0.613572 TATGTCACTGCTGGGTCCGA 60.614 55.000 0.00 0.00 0.00 4.55
2403 2656 0.465705 ATATGTCACTGCTGGGTCCG 59.534 55.000 0.00 0.00 0.00 4.79
2406 2659 2.169352 GACAGATATGTCACTGCTGGGT 59.831 50.000 15.49 0.00 38.59 4.51
2407 2660 2.433604 AGACAGATATGTCACTGCTGGG 59.566 50.000 21.77 0.00 41.02 4.45
2408 2661 3.384146 AGAGACAGATATGTCACTGCTGG 59.616 47.826 21.77 0.00 41.02 4.85
2409 2662 4.652421 AGAGACAGATATGTCACTGCTG 57.348 45.455 21.77 0.00 41.02 4.41
2410 2663 5.445069 AGTAGAGACAGATATGTCACTGCT 58.555 41.667 24.85 24.85 43.24 4.24
2411 2664 5.766150 AGTAGAGACAGATATGTCACTGC 57.234 43.478 24.82 23.34 39.42 4.40
2412 2665 8.994429 AAAAAGTAGAGACAGATATGTCACTG 57.006 34.615 24.82 3.25 39.42 3.66
2413 2666 9.030452 AGAAAAAGTAGAGACAGATATGTCACT 57.970 33.333 21.36 21.36 41.35 3.41
2414 2667 9.081997 CAGAAAAAGTAGAGACAGATATGTCAC 57.918 37.037 21.77 15.71 41.02 3.67
2415 2668 8.807118 ACAGAAAAAGTAGAGACAGATATGTCA 58.193 33.333 21.77 0.00 41.02 3.58
2417 2670 7.971168 CGACAGAAAAAGTAGAGACAGATATGT 59.029 37.037 0.00 0.00 0.00 2.29
2418 2671 8.184848 TCGACAGAAAAAGTAGAGACAGATATG 58.815 37.037 0.00 0.00 0.00 1.78
2419 2672 8.282455 TCGACAGAAAAAGTAGAGACAGATAT 57.718 34.615 0.00 0.00 0.00 1.63
2421 2674 6.576662 TCGACAGAAAAAGTAGAGACAGAT 57.423 37.500 0.00 0.00 0.00 2.90
2422 2675 6.016192 ACATCGACAGAAAAAGTAGAGACAGA 60.016 38.462 0.00 0.00 0.00 3.41
2423 2676 6.153067 ACATCGACAGAAAAAGTAGAGACAG 58.847 40.000 0.00 0.00 0.00 3.51
2424 2677 6.085555 ACATCGACAGAAAAAGTAGAGACA 57.914 37.500 0.00 0.00 0.00 3.41
2425 2678 6.864165 AGAACATCGACAGAAAAAGTAGAGAC 59.136 38.462 0.00 0.00 0.00 3.36
2426 2679 6.863645 CAGAACATCGACAGAAAAAGTAGAGA 59.136 38.462 0.00 0.00 0.00 3.10
2427 2680 6.642950 ACAGAACATCGACAGAAAAAGTAGAG 59.357 38.462 0.00 0.00 0.00 2.43
2428 2681 6.420903 CACAGAACATCGACAGAAAAAGTAGA 59.579 38.462 0.00 0.00 0.00 2.59
2429 2682 6.584954 CACAGAACATCGACAGAAAAAGTAG 58.415 40.000 0.00 0.00 0.00 2.57
2430 2683 5.050363 GCACAGAACATCGACAGAAAAAGTA 60.050 40.000 0.00 0.00 0.00 2.24
2431 2684 4.260784 GCACAGAACATCGACAGAAAAAGT 60.261 41.667 0.00 0.00 0.00 2.66
2436 2689 2.035832 TCAGCACAGAACATCGACAGAA 59.964 45.455 0.00 0.00 0.00 3.02
2437 2690 1.613437 TCAGCACAGAACATCGACAGA 59.387 47.619 0.00 0.00 0.00 3.41
2438 2691 2.070262 TCAGCACAGAACATCGACAG 57.930 50.000 0.00 0.00 0.00 3.51
2440 2693 3.425359 CCAATTCAGCACAGAACATCGAC 60.425 47.826 0.00 0.00 0.00 4.20
2441 2694 2.743664 CCAATTCAGCACAGAACATCGA 59.256 45.455 0.00 0.00 0.00 3.59
2442 2695 2.485426 ACCAATTCAGCACAGAACATCG 59.515 45.455 0.00 0.00 0.00 3.84
2443 2696 4.510038 AACCAATTCAGCACAGAACATC 57.490 40.909 0.00 0.00 0.00 3.06
2444 2697 5.316167 TCTAACCAATTCAGCACAGAACAT 58.684 37.500 0.00 0.00 0.00 2.71
2445 2698 4.713553 TCTAACCAATTCAGCACAGAACA 58.286 39.130 0.00 0.00 0.00 3.18
2446 2699 5.452777 GTTCTAACCAATTCAGCACAGAAC 58.547 41.667 0.00 0.00 35.40 3.01
2447 2700 5.689383 GTTCTAACCAATTCAGCACAGAA 57.311 39.130 0.00 0.00 0.00 3.02
2470 2723 2.033407 CGTCGATTTTAGCCTGATGCAG 60.033 50.000 0.00 0.00 44.83 4.41
2472 2725 2.201732 TCGTCGATTTTAGCCTGATGC 58.798 47.619 0.00 0.00 41.71 3.91
2473 2726 2.219674 GCTCGTCGATTTTAGCCTGATG 59.780 50.000 0.00 0.00 0.00 3.07
2474 2727 2.101582 AGCTCGTCGATTTTAGCCTGAT 59.898 45.455 0.00 0.00 35.54 2.90
2475 2728 1.476891 AGCTCGTCGATTTTAGCCTGA 59.523 47.619 0.00 0.00 35.54 3.86
2476 2729 1.590238 CAGCTCGTCGATTTTAGCCTG 59.410 52.381 0.00 0.00 35.54 4.85
2477 2730 1.476891 TCAGCTCGTCGATTTTAGCCT 59.523 47.619 0.00 0.00 35.54 4.58
2478 2731 1.922570 TCAGCTCGTCGATTTTAGCC 58.077 50.000 0.00 0.00 35.54 3.93
2480 2733 6.094739 TCATTTTCAGCTCGTCGATTTTAG 57.905 37.500 0.00 0.00 0.00 1.85
2484 2737 4.670221 GCTTTCATTTTCAGCTCGTCGATT 60.670 41.667 0.00 0.00 0.00 3.34
2485 2738 3.181516 GCTTTCATTTTCAGCTCGTCGAT 60.182 43.478 0.00 0.00 0.00 3.59
2486 2739 2.157668 GCTTTCATTTTCAGCTCGTCGA 59.842 45.455 0.00 0.00 0.00 4.20
2487 2740 2.158449 AGCTTTCATTTTCAGCTCGTCG 59.842 45.455 0.00 0.00 39.87 5.12
2493 2746 5.564048 AGATCAGAGCTTTCATTTTCAGC 57.436 39.130 0.00 0.00 0.00 4.26
2495 2748 6.713903 AGTGAAGATCAGAGCTTTCATTTTCA 59.286 34.615 1.60 0.00 0.00 2.69
2512 2992 4.330250 CTGTTGGGTCAATCAGTGAAGAT 58.670 43.478 0.00 0.00 38.23 2.40
2588 3068 5.824624 ACAATGCCAGGTCTCATTAGTAATG 59.175 40.000 15.56 15.56 40.28 1.90
2627 3109 9.586435 GATGGTCAAGAAAGAAAGAAAGAAAAA 57.414 29.630 0.00 0.00 0.00 1.94
2628 3110 8.748412 TGATGGTCAAGAAAGAAAGAAAGAAAA 58.252 29.630 0.00 0.00 0.00 2.29
2629 3111 8.190784 GTGATGGTCAAGAAAGAAAGAAAGAAA 58.809 33.333 0.00 0.00 0.00 2.52
2630 3112 7.339212 TGTGATGGTCAAGAAAGAAAGAAAGAA 59.661 33.333 0.00 0.00 0.00 2.52
2631 3113 6.828273 TGTGATGGTCAAGAAAGAAAGAAAGA 59.172 34.615 0.00 0.00 0.00 2.52
2632 3114 7.031226 TGTGATGGTCAAGAAAGAAAGAAAG 57.969 36.000 0.00 0.00 0.00 2.62
2657 3139 9.224267 GAGGTGCATACATCATATAATTCAACT 57.776 33.333 0.00 0.00 37.54 3.16
2697 3179 3.495894 CGCAGCGAGATCATAGAAAAC 57.504 47.619 9.98 0.00 0.00 2.43
2713 3195 1.362768 TTAAGACTGATGCAGCGCAG 58.637 50.000 11.47 1.31 43.65 5.18
2730 3212 8.726202 AGAAACCGGGGGAGTATAATTTTATTA 58.274 33.333 6.32 0.00 0.00 0.98
2781 3265 9.120538 GAACTGCCAAAACATCCTATATTTAGA 57.879 33.333 0.00 0.00 0.00 2.10
2791 3275 5.055812 TGAAATTGAACTGCCAAAACATCC 58.944 37.500 0.00 0.00 0.00 3.51
2815 3299 6.697019 TCGGTAATATAAGACGTTTTGGTAGC 59.303 38.462 0.83 0.00 0.00 3.58
2819 3303 9.269415 CTTTTTCGGTAATATAAGACGTTTTGG 57.731 33.333 0.83 0.00 0.00 3.28
2820 3304 9.269415 CCTTTTTCGGTAATATAAGACGTTTTG 57.731 33.333 0.83 0.00 0.00 2.44
2821 3305 7.964559 GCCTTTTTCGGTAATATAAGACGTTTT 59.035 33.333 0.00 0.00 0.00 2.43
2822 3306 7.335171 AGCCTTTTTCGGTAATATAAGACGTTT 59.665 33.333 0.00 0.00 0.00 3.60
2823 3307 6.820152 AGCCTTTTTCGGTAATATAAGACGTT 59.180 34.615 0.00 0.00 0.00 3.99
2824 3308 6.343703 AGCCTTTTTCGGTAATATAAGACGT 58.656 36.000 0.00 0.00 0.00 4.34
2825 3309 6.839820 AGCCTTTTTCGGTAATATAAGACG 57.160 37.500 0.00 0.00 0.00 4.18
2826 3310 7.849515 CGAAAGCCTTTTTCGGTAATATAAGAC 59.150 37.037 12.72 0.00 45.17 3.01
2827 3311 7.912383 CGAAAGCCTTTTTCGGTAATATAAGA 58.088 34.615 12.72 0.00 45.17 2.10
2846 3330 6.901265 TTTATATATAAAACGGGGCGAAAGC 58.099 36.000 14.26 0.00 41.85 3.51
2847 3331 7.019418 GCTTTATATATAAAACGGGGCGAAAG 58.981 38.462 16.69 5.83 32.39 2.62
2848 3332 6.485984 TGCTTTATATATAAAACGGGGCGAAA 59.514 34.615 16.69 1.77 32.39 3.46
2849 3333 5.996513 TGCTTTATATATAAAACGGGGCGAA 59.003 36.000 16.69 2.32 32.39 4.70
2850 3334 5.409214 GTGCTTTATATATAAAACGGGGCGA 59.591 40.000 16.69 6.81 32.39 5.54
2851 3335 5.391203 GGTGCTTTATATATAAAACGGGGCG 60.391 44.000 16.69 6.67 32.39 6.13
2852 3336 5.391203 CGGTGCTTTATATATAAAACGGGGC 60.391 44.000 16.69 15.63 32.39 5.80
2853 3337 5.933463 TCGGTGCTTTATATATAAAACGGGG 59.067 40.000 16.69 7.83 32.39 5.73
2854 3338 7.201582 GGATCGGTGCTTTATATATAAAACGGG 60.202 40.741 16.69 8.13 32.39 5.28
2855 3339 7.332430 TGGATCGGTGCTTTATATATAAAACGG 59.668 37.037 16.69 15.78 32.39 4.44
2856 3340 8.246908 TGGATCGGTGCTTTATATATAAAACG 57.753 34.615 16.69 16.74 32.39 3.60
2860 3344 9.542462 GCTTATGGATCGGTGCTTTATATATAA 57.458 33.333 0.81 0.81 0.00 0.98
2861 3345 8.700973 TGCTTATGGATCGGTGCTTTATATATA 58.299 33.333 0.00 0.00 0.00 0.86
2862 3346 7.564793 TGCTTATGGATCGGTGCTTTATATAT 58.435 34.615 0.00 0.00 0.00 0.86
2863 3347 6.941857 TGCTTATGGATCGGTGCTTTATATA 58.058 36.000 0.00 0.00 0.00 0.86
2864 3348 5.804639 TGCTTATGGATCGGTGCTTTATAT 58.195 37.500 0.00 0.00 0.00 0.86
2865 3349 5.222079 TGCTTATGGATCGGTGCTTTATA 57.778 39.130 0.00 0.00 0.00 0.98
2866 3350 4.085357 TGCTTATGGATCGGTGCTTTAT 57.915 40.909 0.00 0.00 0.00 1.40
2867 3351 3.552132 TGCTTATGGATCGGTGCTTTA 57.448 42.857 0.00 0.00 0.00 1.85
2868 3352 2.418368 TGCTTATGGATCGGTGCTTT 57.582 45.000 0.00 0.00 0.00 3.51
2869 3353 2.017049 GTTGCTTATGGATCGGTGCTT 58.983 47.619 0.00 0.00 0.00 3.91
2870 3354 1.065491 TGTTGCTTATGGATCGGTGCT 60.065 47.619 0.00 0.00 0.00 4.40
2871 3355 1.064060 GTGTTGCTTATGGATCGGTGC 59.936 52.381 0.00 0.00 0.00 5.01
2872 3356 1.327460 CGTGTTGCTTATGGATCGGTG 59.673 52.381 0.00 0.00 0.00 4.94
2873 3357 1.206132 TCGTGTTGCTTATGGATCGGT 59.794 47.619 0.00 0.00 0.00 4.69
2874 3358 1.934589 TCGTGTTGCTTATGGATCGG 58.065 50.000 0.00 0.00 0.00 4.18
2875 3359 4.048504 TGTATCGTGTTGCTTATGGATCG 58.951 43.478 0.00 0.00 0.00 3.69
2876 3360 5.984233 TTGTATCGTGTTGCTTATGGATC 57.016 39.130 0.00 0.00 0.00 3.36
2877 3361 5.880332 AGTTTGTATCGTGTTGCTTATGGAT 59.120 36.000 0.00 0.00 0.00 3.41
2878 3362 5.242434 AGTTTGTATCGTGTTGCTTATGGA 58.758 37.500 0.00 0.00 0.00 3.41
2879 3363 5.121611 TGAGTTTGTATCGTGTTGCTTATGG 59.878 40.000 0.00 0.00 0.00 2.74
2880 3364 6.015504 GTGAGTTTGTATCGTGTTGCTTATG 58.984 40.000 0.00 0.00 0.00 1.90
2881 3365 5.163992 CGTGAGTTTGTATCGTGTTGCTTAT 60.164 40.000 0.00 0.00 0.00 1.73
2882 3366 4.149221 CGTGAGTTTGTATCGTGTTGCTTA 59.851 41.667 0.00 0.00 0.00 3.09
2883 3367 3.059868 CGTGAGTTTGTATCGTGTTGCTT 60.060 43.478 0.00 0.00 0.00 3.91
2884 3368 2.475111 CGTGAGTTTGTATCGTGTTGCT 59.525 45.455 0.00 0.00 0.00 3.91
2885 3369 2.822827 CGTGAGTTTGTATCGTGTTGC 58.177 47.619 0.00 0.00 0.00 4.17
2886 3370 2.411031 GGCGTGAGTTTGTATCGTGTTG 60.411 50.000 0.00 0.00 0.00 3.33
2887 3371 1.796459 GGCGTGAGTTTGTATCGTGTT 59.204 47.619 0.00 0.00 0.00 3.32
2888 3372 1.269883 TGGCGTGAGTTTGTATCGTGT 60.270 47.619 0.00 0.00 0.00 4.49
2889 3373 1.126113 GTGGCGTGAGTTTGTATCGTG 59.874 52.381 0.00 0.00 0.00 4.35
2890 3374 1.425412 GTGGCGTGAGTTTGTATCGT 58.575 50.000 0.00 0.00 0.00 3.73
2891 3375 0.719465 GGTGGCGTGAGTTTGTATCG 59.281 55.000 0.00 0.00 0.00 2.92
2892 3376 1.463444 GTGGTGGCGTGAGTTTGTATC 59.537 52.381 0.00 0.00 0.00 2.24
2893 3377 1.519408 GTGGTGGCGTGAGTTTGTAT 58.481 50.000 0.00 0.00 0.00 2.29
2894 3378 0.533308 GGTGGTGGCGTGAGTTTGTA 60.533 55.000 0.00 0.00 0.00 2.41
2895 3379 1.822186 GGTGGTGGCGTGAGTTTGT 60.822 57.895 0.00 0.00 0.00 2.83
2896 3380 2.892334 CGGTGGTGGCGTGAGTTTG 61.892 63.158 0.00 0.00 0.00 2.93
2897 3381 2.590575 CGGTGGTGGCGTGAGTTT 60.591 61.111 0.00 0.00 0.00 2.66
2905 3389 3.737172 GTCATGTGCGGTGGTGGC 61.737 66.667 0.00 0.00 0.00 5.01
2906 3390 2.281414 TGTCATGTGCGGTGGTGG 60.281 61.111 0.00 0.00 0.00 4.61
2907 3391 1.891449 TGTGTCATGTGCGGTGGTG 60.891 57.895 0.00 0.00 0.00 4.17
2908 3392 1.891919 GTGTGTCATGTGCGGTGGT 60.892 57.895 0.00 0.00 0.00 4.16
2909 3393 1.891449 TGTGTGTCATGTGCGGTGG 60.891 57.895 0.00 0.00 0.00 4.61
2910 3394 1.279539 GTGTGTGTCATGTGCGGTG 59.720 57.895 0.00 0.00 0.00 4.94
2911 3395 1.153269 TGTGTGTGTCATGTGCGGT 60.153 52.632 0.00 0.00 0.00 5.68
2912 3396 1.159713 AGTGTGTGTGTCATGTGCGG 61.160 55.000 0.00 0.00 0.00 5.69
2913 3397 0.041926 CAGTGTGTGTGTCATGTGCG 60.042 55.000 0.00 0.00 0.00 5.34
2914 3398 1.298602 TCAGTGTGTGTGTCATGTGC 58.701 50.000 0.00 0.00 0.00 4.57
2915 3399 2.288729 CCTTCAGTGTGTGTGTCATGTG 59.711 50.000 0.00 0.00 0.00 3.21
2916 3400 2.564771 CCTTCAGTGTGTGTGTCATGT 58.435 47.619 0.00 0.00 0.00 3.21
2917 3401 1.265095 GCCTTCAGTGTGTGTGTCATG 59.735 52.381 0.00 0.00 0.00 3.07
2918 3402 1.134128 TGCCTTCAGTGTGTGTGTCAT 60.134 47.619 0.00 0.00 0.00 3.06
2919 3403 0.251634 TGCCTTCAGTGTGTGTGTCA 59.748 50.000 0.00 0.00 0.00 3.58
2920 3404 1.331756 CTTGCCTTCAGTGTGTGTGTC 59.668 52.381 0.00 0.00 0.00 3.67
2921 3405 1.065491 TCTTGCCTTCAGTGTGTGTGT 60.065 47.619 0.00 0.00 0.00 3.72
2922 3406 1.667236 TCTTGCCTTCAGTGTGTGTG 58.333 50.000 0.00 0.00 0.00 3.82
2923 3407 2.645838 ATCTTGCCTTCAGTGTGTGT 57.354 45.000 0.00 0.00 0.00 3.72
2924 3408 3.402110 TGTATCTTGCCTTCAGTGTGTG 58.598 45.455 0.00 0.00 0.00 3.82
2925 3409 3.769739 TGTATCTTGCCTTCAGTGTGT 57.230 42.857 0.00 0.00 0.00 3.72
2926 3410 4.083110 CCTTTGTATCTTGCCTTCAGTGTG 60.083 45.833 0.00 0.00 0.00 3.82
2927 3411 4.074970 CCTTTGTATCTTGCCTTCAGTGT 58.925 43.478 0.00 0.00 0.00 3.55
2928 3412 4.074970 ACCTTTGTATCTTGCCTTCAGTG 58.925 43.478 0.00 0.00 0.00 3.66
2929 3413 4.074970 CACCTTTGTATCTTGCCTTCAGT 58.925 43.478 0.00 0.00 0.00 3.41
2930 3414 3.119708 GCACCTTTGTATCTTGCCTTCAG 60.120 47.826 0.00 0.00 0.00 3.02
2931 3415 2.819608 GCACCTTTGTATCTTGCCTTCA 59.180 45.455 0.00 0.00 0.00 3.02
2932 3416 3.494045 GCACCTTTGTATCTTGCCTTC 57.506 47.619 0.00 0.00 0.00 3.46
2936 3420 1.398390 CTCGGCACCTTTGTATCTTGC 59.602 52.381 0.00 0.00 0.00 4.01
2937 3421 1.398390 GCTCGGCACCTTTGTATCTTG 59.602 52.381 0.00 0.00 0.00 3.02
2938 3422 1.003118 TGCTCGGCACCTTTGTATCTT 59.997 47.619 0.00 0.00 31.71 2.40
2939 3423 0.613260 TGCTCGGCACCTTTGTATCT 59.387 50.000 0.00 0.00 31.71 1.98
2940 3424 3.153024 TGCTCGGCACCTTTGTATC 57.847 52.632 0.00 0.00 31.71 2.24
2950 3434 4.927782 GTGTGGTGGTGCTCGGCA 62.928 66.667 0.00 0.00 35.60 5.69
2952 3436 3.551496 ATGGTGTGGTGGTGCTCGG 62.551 63.158 0.00 0.00 0.00 4.63
2953 3437 2.032528 ATGGTGTGGTGGTGCTCG 59.967 61.111 0.00 0.00 0.00 5.03
2954 3438 1.675641 GGATGGTGTGGTGGTGCTC 60.676 63.158 0.00 0.00 0.00 4.26
2955 3439 2.436109 GGATGGTGTGGTGGTGCT 59.564 61.111 0.00 0.00 0.00 4.40
2956 3440 2.676471 GGGATGGTGTGGTGGTGC 60.676 66.667 0.00 0.00 0.00 5.01
2957 3441 1.152599 TTGGGATGGTGTGGTGGTG 59.847 57.895 0.00 0.00 0.00 4.17
2958 3442 1.152830 GTTGGGATGGTGTGGTGGT 59.847 57.895 0.00 0.00 0.00 4.16
2959 3443 1.971167 CGTTGGGATGGTGTGGTGG 60.971 63.158 0.00 0.00 0.00 4.61
2960 3444 1.072332 TCGTTGGGATGGTGTGGTG 59.928 57.895 0.00 0.00 0.00 4.17
2961 3445 1.072505 GTCGTTGGGATGGTGTGGT 59.927 57.895 0.00 0.00 0.00 4.16
2962 3446 0.611200 TAGTCGTTGGGATGGTGTGG 59.389 55.000 0.00 0.00 0.00 4.17
2963 3447 1.674817 GGTAGTCGTTGGGATGGTGTG 60.675 57.143 0.00 0.00 0.00 3.82
2964 3448 0.611714 GGTAGTCGTTGGGATGGTGT 59.388 55.000 0.00 0.00 0.00 4.16
2965 3449 0.611200 TGGTAGTCGTTGGGATGGTG 59.389 55.000 0.00 0.00 0.00 4.17
2966 3450 1.278127 CTTGGTAGTCGTTGGGATGGT 59.722 52.381 0.00 0.00 0.00 3.55
2967 3451 2.012051 GCTTGGTAGTCGTTGGGATGG 61.012 57.143 0.00 0.00 0.00 3.51
2968 3452 1.369625 GCTTGGTAGTCGTTGGGATG 58.630 55.000 0.00 0.00 0.00 3.51
2969 3453 0.252197 GGCTTGGTAGTCGTTGGGAT 59.748 55.000 0.00 0.00 0.00 3.85
2970 3454 1.122632 TGGCTTGGTAGTCGTTGGGA 61.123 55.000 0.00 0.00 0.00 4.37
2971 3455 0.035439 ATGGCTTGGTAGTCGTTGGG 60.035 55.000 0.00 0.00 0.00 4.12
2972 3456 1.821216 AATGGCTTGGTAGTCGTTGG 58.179 50.000 0.00 0.00 34.02 3.77
2973 3457 3.201726 CAAATGGCTTGGTAGTCGTTG 57.798 47.619 0.00 0.00 35.45 4.10
2993 3477 2.327373 GGTAGGATCCCTGGTTCTACC 58.673 57.143 8.55 8.22 39.22 3.18
2994 3478 1.962100 CGGTAGGATCCCTGGTTCTAC 59.038 57.143 8.55 2.19 34.61 2.59
2995 3479 1.133262 CCGGTAGGATCCCTGGTTCTA 60.133 57.143 8.55 0.00 41.02 2.10
2996 3480 0.398664 CCGGTAGGATCCCTGGTTCT 60.399 60.000 8.55 0.00 41.02 3.01
2997 3481 0.398098 TCCGGTAGGATCCCTGGTTC 60.398 60.000 8.55 0.00 42.75 3.62
2998 3482 1.707827 TCCGGTAGGATCCCTGGTT 59.292 57.895 8.55 0.00 42.75 3.67
2999 3483 3.447261 TCCGGTAGGATCCCTGGT 58.553 61.111 8.55 0.00 42.75 4.00
3007 3491 2.043248 GGAGCAGGTCCGGTAGGA 60.043 66.667 1.99 0.00 46.11 2.94
3014 3498 1.218316 CAACCTACGGAGCAGGTCC 59.782 63.158 8.79 8.79 45.90 4.46
3015 3499 1.134560 CTACAACCTACGGAGCAGGTC 59.865 57.143 0.00 0.00 45.90 3.85
3017 3501 0.460311 CCTACAACCTACGGAGCAGG 59.540 60.000 0.00 0.00 39.25 4.85
3018 3502 0.460311 CCCTACAACCTACGGAGCAG 59.540 60.000 0.00 0.00 0.00 4.24
3019 3503 0.974010 CCCCTACAACCTACGGAGCA 60.974 60.000 0.00 0.00 0.00 4.26
3020 3504 0.685458 TCCCCTACAACCTACGGAGC 60.685 60.000 0.00 0.00 0.00 4.70
3021 3505 1.755380 CTTCCCCTACAACCTACGGAG 59.245 57.143 0.00 0.00 0.00 4.63
3022 3506 1.620524 CCTTCCCCTACAACCTACGGA 60.621 57.143 0.00 0.00 0.00 4.69
3023 3507 0.828677 CCTTCCCCTACAACCTACGG 59.171 60.000 0.00 0.00 0.00 4.02
3024 3508 1.856629 TCCTTCCCCTACAACCTACG 58.143 55.000 0.00 0.00 0.00 3.51
3025 3509 2.438392 CCATCCTTCCCCTACAACCTAC 59.562 54.545 0.00 0.00 0.00 3.18
3026 3510 2.319747 TCCATCCTTCCCCTACAACCTA 59.680 50.000 0.00 0.00 0.00 3.08
3027 3511 1.082194 TCCATCCTTCCCCTACAACCT 59.918 52.381 0.00 0.00 0.00 3.50
3028 3512 1.490910 CTCCATCCTTCCCCTACAACC 59.509 57.143 0.00 0.00 0.00 3.77
3029 3513 1.134068 GCTCCATCCTTCCCCTACAAC 60.134 57.143 0.00 0.00 0.00 3.32
3030 3514 1.213296 GCTCCATCCTTCCCCTACAA 58.787 55.000 0.00 0.00 0.00 2.41
3031 3515 1.048724 CGCTCCATCCTTCCCCTACA 61.049 60.000 0.00 0.00 0.00 2.74
3032 3516 1.749033 CGCTCCATCCTTCCCCTAC 59.251 63.158 0.00 0.00 0.00 3.18
3033 3517 1.459539 CCGCTCCATCCTTCCCCTA 60.460 63.158 0.00 0.00 0.00 3.53
3034 3518 2.770048 CCGCTCCATCCTTCCCCT 60.770 66.667 0.00 0.00 0.00 4.79
3035 3519 3.878667 CCCGCTCCATCCTTCCCC 61.879 72.222 0.00 0.00 0.00 4.81
3036 3520 3.878667 CCCCGCTCCATCCTTCCC 61.879 72.222 0.00 0.00 0.00 3.97
3037 3521 4.570874 GCCCCGCTCCATCCTTCC 62.571 72.222 0.00 0.00 0.00 3.46
3038 3522 4.918201 CGCCCCGCTCCATCCTTC 62.918 72.222 0.00 0.00 0.00 3.46
3087 3571 2.336809 CTCCTCCTACGCGATGGC 59.663 66.667 15.93 0.00 0.00 4.40
3088 3572 0.896019 ATCCTCCTCCTACGCGATGG 60.896 60.000 15.93 14.78 0.00 3.51
3089 3573 0.242286 CATCCTCCTCCTACGCGATG 59.758 60.000 15.93 4.35 0.00 3.84
3090 3574 0.896019 CCATCCTCCTCCTACGCGAT 60.896 60.000 15.93 0.00 0.00 4.58
3091 3575 1.528542 CCATCCTCCTCCTACGCGA 60.529 63.158 15.93 0.00 0.00 5.87
3092 3576 3.043419 CCATCCTCCTCCTACGCG 58.957 66.667 3.53 3.53 0.00 6.01
3093 3577 2.737830 GCCATCCTCCTCCTACGC 59.262 66.667 0.00 0.00 0.00 4.42
3094 3578 2.565645 CCGCCATCCTCCTCCTACG 61.566 68.421 0.00 0.00 0.00 3.51
3095 3579 2.873525 GCCGCCATCCTCCTCCTAC 61.874 68.421 0.00 0.00 0.00 3.18
3096 3580 2.524394 GCCGCCATCCTCCTCCTA 60.524 66.667 0.00 0.00 0.00 2.94
3097 3581 4.804420 TGCCGCCATCCTCCTCCT 62.804 66.667 0.00 0.00 0.00 3.69
3098 3582 4.247380 CTGCCGCCATCCTCCTCC 62.247 72.222 0.00 0.00 0.00 4.30
3099 3583 4.925861 GCTGCCGCCATCCTCCTC 62.926 72.222 0.00 0.00 0.00 3.71
3104 3588 4.552365 TAGCTGCTGCCGCCATCC 62.552 66.667 13.43 0.00 40.80 3.51
3105 3589 2.971413 CTAGCTGCTGCCGCCATC 60.971 66.667 13.43 0.00 40.80 3.51
3106 3590 4.559063 CCTAGCTGCTGCCGCCAT 62.559 66.667 13.43 0.00 40.80 4.40
3109 3593 3.385749 TAACCCTAGCTGCTGCCGC 62.386 63.158 13.43 8.06 40.80 6.53
3110 3594 1.227380 CTAACCCTAGCTGCTGCCG 60.227 63.158 13.43 3.78 40.80 5.69
3111 3595 0.105778 CTCTAACCCTAGCTGCTGCC 59.894 60.000 13.43 0.00 40.80 4.85
3112 3596 0.105778 CCTCTAACCCTAGCTGCTGC 59.894 60.000 13.43 7.62 40.05 5.25
3113 3597 0.105778 GCCTCTAACCCTAGCTGCTG 59.894 60.000 13.43 2.21 0.00 4.41
3114 3598 1.395826 CGCCTCTAACCCTAGCTGCT 61.396 60.000 7.57 7.57 0.00 4.24
3115 3599 1.068250 CGCCTCTAACCCTAGCTGC 59.932 63.158 0.00 0.00 0.00 5.25
3116 3600 1.742768 CCGCCTCTAACCCTAGCTG 59.257 63.158 0.00 0.00 0.00 4.24
3117 3601 2.134933 GCCGCCTCTAACCCTAGCT 61.135 63.158 0.00 0.00 0.00 3.32
3118 3602 0.826672 TAGCCGCCTCTAACCCTAGC 60.827 60.000 0.00 0.00 0.00 3.42
3119 3603 1.249407 CTAGCCGCCTCTAACCCTAG 58.751 60.000 0.00 0.00 0.00 3.02
3120 3604 0.178970 CCTAGCCGCCTCTAACCCTA 60.179 60.000 0.00 0.00 0.00 3.53
3121 3605 1.457831 CCTAGCCGCCTCTAACCCT 60.458 63.158 0.00 0.00 0.00 4.34
3122 3606 3.139565 CCTAGCCGCCTCTAACCC 58.860 66.667 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.