Multiple sequence alignment - TraesCS2D01G248200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G248200 chr2D 100.000 6073 0 0 1 6073 291957637 291951565 0.000000e+00 11215.0
1 TraesCS2D01G248200 chr2D 90.183 438 28 7 5322 5758 572917047 572916624 1.910000e-154 556.0
2 TraesCS2D01G248200 chr2D 88.889 99 10 1 4169 4267 645267808 645267905 2.970000e-23 121.0
3 TraesCS2D01G248200 chr2A 95.084 3824 95 30 2 3794 342548063 342544302 0.000000e+00 5934.0
4 TraesCS2D01G248200 chr2A 89.964 1096 38 24 3801 4867 342544215 342543163 0.000000e+00 1349.0
5 TraesCS2D01G248200 chr2A 87.637 728 57 18 5367 6067 603513930 603513209 0.000000e+00 815.0
6 TraesCS2D01G248200 chr2A 93.289 447 27 3 4945 5389 342543162 342542717 0.000000e+00 656.0
7 TraesCS2D01G248200 chr2B 93.211 2180 66 37 802 2916 368340303 368338141 0.000000e+00 3131.0
8 TraesCS2D01G248200 chr2B 85.926 1215 74 63 2973 4129 368338014 368336839 0.000000e+00 1206.0
9 TraesCS2D01G248200 chr2B 85.512 566 30 21 4645 5176 368336286 368335739 1.490000e-150 544.0
10 TraesCS2D01G248200 chr2B 93.478 322 11 4 4271 4585 368336772 368336454 2.560000e-128 470.0
11 TraesCS2D01G248200 chr2B 93.814 291 13 2 2 288 368341462 368341173 3.360000e-117 433.0
12 TraesCS2D01G248200 chr2B 92.885 253 13 2 561 808 368340999 368340747 4.470000e-96 363.0
13 TraesCS2D01G248200 chr2B 96.241 133 5 0 326 458 368341169 368341037 1.020000e-52 219.0
14 TraesCS2D01G248200 chr6B 89.616 886 75 13 5190 6067 163658114 163657238 0.000000e+00 1110.0
15 TraesCS2D01G248200 chr6B 86.338 893 81 15 5192 6067 2635278 2634410 0.000000e+00 935.0
16 TraesCS2D01G248200 chr6B 92.135 89 7 0 4170 4258 339353735 339353647 6.390000e-25 126.0
17 TraesCS2D01G248200 chr6D 89.597 894 63 14 5200 6068 9873792 9874680 0.000000e+00 1109.0
18 TraesCS2D01G248200 chr6D 86.599 888 70 24 5212 6073 27099868 27099004 0.000000e+00 935.0
19 TraesCS2D01G248200 chr6D 90.722 97 6 3 4164 4258 452939004 452939099 6.390000e-25 126.0
20 TraesCS2D01G248200 chr6D 88.889 99 9 1 4170 4268 373421968 373421872 2.970000e-23 121.0
21 TraesCS2D01G248200 chr4B 89.338 891 65 15 5192 6067 21934284 21933409 0.000000e+00 1092.0
22 TraesCS2D01G248200 chr3B 89.250 893 67 15 5190 6067 825474134 825475012 0.000000e+00 1090.0
23 TraesCS2D01G248200 chr3B 88.130 893 77 17 5190 6067 618007311 618006433 0.000000e+00 1035.0
24 TraesCS2D01G248200 chr5D 85.194 878 89 23 5228 6069 445080954 445081826 0.000000e+00 863.0
25 TraesCS2D01G248200 chr5D 83.678 919 90 26 5192 6072 548858985 548858089 0.000000e+00 811.0
26 TraesCS2D01G248200 chr5D 75.634 1104 213 35 1650 2722 491095713 491096791 1.180000e-136 497.0
27 TraesCS2D01G248200 chr5D 86.916 107 12 2 4162 4268 301581413 301581309 1.070000e-22 119.0
28 TraesCS2D01G248200 chr7B 83.412 639 79 11 5190 5817 643129567 643130189 8.830000e-158 568.0
29 TraesCS2D01G248200 chr5B 76.268 1104 206 41 1650 2722 605822424 605823502 2.490000e-148 536.0
30 TraesCS2D01G248200 chr5A 75.703 1103 214 37 1650 2722 613540116 613541194 2.530000e-138 503.0
31 TraesCS2D01G248200 chr1A 81.679 262 40 5 4306 4566 444171335 444171081 1.710000e-50 211.0
32 TraesCS2D01G248200 chr4D 84.672 137 15 3 4430 4566 3385830 3385960 1.370000e-26 132.0
33 TraesCS2D01G248200 chr4D 90.526 95 9 0 4165 4259 190532984 190533078 6.390000e-25 126.0
34 TraesCS2D01G248200 chr4D 88.462 104 12 0 4174 4277 337701284 337701181 6.390000e-25 126.0
35 TraesCS2D01G248200 chr3D 93.258 89 6 0 4170 4258 175241985 175241897 1.370000e-26 132.0
36 TraesCS2D01G248200 chr3A 89.216 102 10 1 4169 4269 38015400 38015501 6.390000e-25 126.0
37 TraesCS2D01G248200 chr6A 85.938 64 9 0 5177 5240 15366742 15366805 1.090000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G248200 chr2D 291951565 291957637 6072 True 11215.000000 11215 100.000 1 6073 1 chr2D.!!$R1 6072
1 TraesCS2D01G248200 chr2A 342542717 342548063 5346 True 2646.333333 5934 92.779 2 5389 3 chr2A.!!$R2 5387
2 TraesCS2D01G248200 chr2A 603513209 603513930 721 True 815.000000 815 87.637 5367 6067 1 chr2A.!!$R1 700
3 TraesCS2D01G248200 chr2B 368335739 368341462 5723 True 909.428571 3131 91.581 2 5176 7 chr2B.!!$R1 5174
4 TraesCS2D01G248200 chr6B 163657238 163658114 876 True 1110.000000 1110 89.616 5190 6067 1 chr6B.!!$R2 877
5 TraesCS2D01G248200 chr6B 2634410 2635278 868 True 935.000000 935 86.338 5192 6067 1 chr6B.!!$R1 875
6 TraesCS2D01G248200 chr6D 9873792 9874680 888 False 1109.000000 1109 89.597 5200 6068 1 chr6D.!!$F1 868
7 TraesCS2D01G248200 chr6D 27099004 27099868 864 True 935.000000 935 86.599 5212 6073 1 chr6D.!!$R1 861
8 TraesCS2D01G248200 chr4B 21933409 21934284 875 True 1092.000000 1092 89.338 5192 6067 1 chr4B.!!$R1 875
9 TraesCS2D01G248200 chr3B 825474134 825475012 878 False 1090.000000 1090 89.250 5190 6067 1 chr3B.!!$F1 877
10 TraesCS2D01G248200 chr3B 618006433 618007311 878 True 1035.000000 1035 88.130 5190 6067 1 chr3B.!!$R1 877
11 TraesCS2D01G248200 chr5D 445080954 445081826 872 False 863.000000 863 85.194 5228 6069 1 chr5D.!!$F1 841
12 TraesCS2D01G248200 chr5D 548858089 548858985 896 True 811.000000 811 83.678 5192 6072 1 chr5D.!!$R2 880
13 TraesCS2D01G248200 chr5D 491095713 491096791 1078 False 497.000000 497 75.634 1650 2722 1 chr5D.!!$F2 1072
14 TraesCS2D01G248200 chr7B 643129567 643130189 622 False 568.000000 568 83.412 5190 5817 1 chr7B.!!$F1 627
15 TraesCS2D01G248200 chr5B 605822424 605823502 1078 False 536.000000 536 76.268 1650 2722 1 chr5B.!!$F1 1072
16 TraesCS2D01G248200 chr5A 613540116 613541194 1078 False 503.000000 503 75.703 1650 2722 1 chr5A.!!$F1 1072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 498 0.250467 TGCTTCTCCACCAGCTGAAC 60.250 55.0 17.39 0.00 36.92 3.18 F
1320 1801 0.038159 GTCAAGGACGGACCACTCAG 60.038 60.0 0.00 0.00 42.04 3.35 F
2153 2675 0.036010 CTCAGCCTCCGGAACAACAT 60.036 55.0 5.23 0.00 0.00 2.71 F
2192 2714 0.108424 GAGTCGCTCAAGGACATGCT 60.108 55.0 0.00 0.00 36.87 3.79 F
2964 3593 0.178964 TTGGGTTGGGAGGCAGAAAG 60.179 55.0 0.00 0.00 0.00 2.62 F
4410 5209 0.105593 CATGAGGACCGTCATGGAGG 59.894 60.0 19.37 5.93 46.91 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 2100 0.663688 CAAGATGAGCAGAGCATGGC 59.336 55.000 0.00 0.00 0.00 4.40 R
2238 2760 1.671742 GTTCTTGAGGTCCGGCAGA 59.328 57.895 0.00 0.00 0.00 4.26 R
3545 4209 1.454201 GAAGCTCCAGTTGGGTTAGC 58.546 55.000 0.00 0.43 38.11 3.09 R
3555 4228 2.093553 CCTTCTGAAGAGGAAGCTCCAG 60.094 54.545 18.68 0.00 39.61 3.86 R
4806 5745 0.179045 ATATCCAGTGGCGTCTTGGC 60.179 55.000 3.51 0.00 45.12 4.52 R
5771 6792 0.254178 ACCAGCGATCAGGATTTGCT 59.746 50.000 3.10 4.68 34.53 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 6.410540 AGGAATTTTGTGGCAAAAACAGTAA 58.589 32.000 1.39 0.00 32.12 2.24
244 251 9.654663 AATACACTCTGAATTTACTAGTTCACC 57.345 33.333 0.00 0.00 31.55 4.02
303 310 1.301558 CTGCCAGGCCGAGATGATC 60.302 63.158 9.64 0.00 0.00 2.92
402 409 7.642669 TCTTTCTTGTGATTTAAGCTGTGAAG 58.357 34.615 0.00 0.00 0.00 3.02
454 461 4.232221 CCAAAAGCAGCAGTAAATCACAG 58.768 43.478 0.00 0.00 0.00 3.66
482 489 0.312102 GGTGTTGCTTGCTTCTCCAC 59.688 55.000 0.00 0.00 0.00 4.02
491 498 0.250467 TGCTTCTCCACCAGCTGAAC 60.250 55.000 17.39 0.00 36.92 3.18
520 527 6.191657 TCATATCCCTATCAATTGCACACT 57.808 37.500 0.00 0.00 0.00 3.55
546 553 3.731652 TTGATGCCAGAAAACAACAGG 57.268 42.857 0.00 0.00 0.00 4.00
717 725 4.990426 CCAGTAAAGAAAGCAACCATTTGG 59.010 41.667 0.00 0.00 42.17 3.28
862 1323 0.902984 TGCCAGCCTCCGTTTCTCTA 60.903 55.000 0.00 0.00 0.00 2.43
944 1405 4.910585 GTGATGCCCCGCCTACCG 62.911 72.222 0.00 0.00 0.00 4.02
1033 1498 4.614967 ATGATTCCCTCCCTTGACAAAT 57.385 40.909 0.00 0.00 0.00 2.32
1084 1549 3.066621 TGTTCCATTCACTTCACTTGCAC 59.933 43.478 0.00 0.00 0.00 4.57
1116 1581 8.847196 CATCTCATTATCATCATTCAAAGGTGT 58.153 33.333 0.00 0.00 0.00 4.16
1149 1624 6.120507 AGATTTCTTGCACTTTCTCTAGGT 57.879 37.500 0.00 0.00 0.00 3.08
1193 1674 4.226427 TCTATTGCCAGTTCTTCATGCT 57.774 40.909 0.00 0.00 0.00 3.79
1194 1675 3.943381 TCTATTGCCAGTTCTTCATGCTG 59.057 43.478 0.00 0.00 0.00 4.41
1195 1676 2.275134 TTGCCAGTTCTTCATGCTGA 57.725 45.000 0.00 0.00 32.39 4.26
1196 1677 1.527034 TGCCAGTTCTTCATGCTGAC 58.473 50.000 0.00 0.00 32.39 3.51
1197 1678 1.202794 TGCCAGTTCTTCATGCTGACA 60.203 47.619 0.00 0.00 32.39 3.58
1318 1799 0.319641 GTGTCAAGGACGGACCACTC 60.320 60.000 0.00 0.00 42.04 3.51
1319 1800 0.757561 TGTCAAGGACGGACCACTCA 60.758 55.000 0.00 0.00 42.04 3.41
1320 1801 0.038159 GTCAAGGACGGACCACTCAG 60.038 60.000 0.00 0.00 42.04 3.35
1322 1803 0.038159 CAAGGACGGACCACTCAGTC 60.038 60.000 0.00 0.00 40.00 3.51
1323 1804 1.524863 AAGGACGGACCACTCAGTCG 61.525 60.000 0.00 0.00 41.22 4.18
1324 1805 2.567049 GACGGACCACTCAGTCGG 59.433 66.667 0.00 0.00 41.46 4.79
1325 1806 2.203451 ACGGACCACTCAGTCGGT 60.203 61.111 0.00 0.00 43.20 4.69
1329 1810 3.778955 ACCACTCAGTCGGTCAGG 58.221 61.111 0.00 0.00 0.00 3.86
1330 1811 2.262915 CCACTCAGTCGGTCAGGC 59.737 66.667 0.00 0.00 0.00 4.85
1331 1812 2.262915 CACTCAGTCGGTCAGGCC 59.737 66.667 0.00 0.00 0.00 5.19
1332 1813 2.203640 ACTCAGTCGGTCAGGCCA 60.204 61.111 5.01 0.00 36.97 5.36
1333 1814 2.279069 ACTCAGTCGGTCAGGCCAG 61.279 63.158 5.01 0.00 36.97 4.85
1334 1815 2.997315 TCAGTCGGTCAGGCCAGG 60.997 66.667 5.01 0.00 36.97 4.45
1335 1816 4.767255 CAGTCGGTCAGGCCAGGC 62.767 72.222 5.01 1.26 36.97 4.85
1400 1888 6.324254 GTGACCAGTACCTATCTCCATTAACT 59.676 42.308 0.00 0.00 0.00 2.24
1401 1889 6.323996 TGACCAGTACCTATCTCCATTAACTG 59.676 42.308 0.00 0.00 34.33 3.16
1402 1890 6.203072 ACCAGTACCTATCTCCATTAACTGT 58.797 40.000 0.00 0.00 33.02 3.55
1403 1891 7.359849 ACCAGTACCTATCTCCATTAACTGTA 58.640 38.462 0.00 0.00 33.02 2.74
1908 2424 3.790437 CTGTCCAGGCTGCCGGAT 61.790 66.667 26.76 4.43 31.41 4.18
2153 2675 0.036010 CTCAGCCTCCGGAACAACAT 60.036 55.000 5.23 0.00 0.00 2.71
2192 2714 0.108424 GAGTCGCTCAAGGACATGCT 60.108 55.000 0.00 0.00 36.87 3.79
2238 2760 0.328258 CCAACAACCTCTCCGGGAAT 59.672 55.000 0.00 0.00 36.97 3.01
2646 3186 3.854856 GCCAACTGCCTTTCCACA 58.145 55.556 0.00 0.00 0.00 4.17
2832 3384 2.435059 GTGGTGAGGAAGGCGAGC 60.435 66.667 0.00 0.00 0.00 5.03
2833 3385 4.069232 TGGTGAGGAAGGCGAGCG 62.069 66.667 0.00 0.00 0.00 5.03
2869 3421 2.276116 GCACGGAGACTGGTGGAGA 61.276 63.158 5.63 0.00 34.76 3.71
2960 3589 2.283173 GGTTGGGTTGGGAGGCAG 60.283 66.667 0.00 0.00 0.00 4.85
2964 3593 0.178964 TTGGGTTGGGAGGCAGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
2974 3603 2.509964 GGAGGCAGAAAGGGAAGGAATA 59.490 50.000 0.00 0.00 0.00 1.75
3001 3632 5.220777 GCTGCTAACTTGTAGTGTTTGAACA 60.221 40.000 0.00 0.00 36.38 3.18
3002 3633 6.676943 GCTGCTAACTTGTAGTGTTTGAACAA 60.677 38.462 0.00 0.00 41.21 2.83
3003 3634 7.147143 TGCTAACTTGTAGTGTTTGAACAAA 57.853 32.000 0.00 0.00 41.21 2.83
3167 3798 0.326143 TGCTCATGGCCAGGTAGGTA 60.326 55.000 18.43 5.92 40.92 3.08
3534 4198 8.870879 GTTACCTAGCTAGTGTTTTTGTCATAG 58.129 37.037 19.31 1.59 0.00 2.23
3537 4201 7.038941 ACCTAGCTAGTGTTTTTGTCATAGTCT 60.039 37.037 19.31 0.00 0.00 3.24
3545 4209 9.314321 AGTGTTTTTGTCATAGTCTATAATCGG 57.686 33.333 0.00 0.00 0.00 4.18
3555 4228 5.211174 AGTCTATAATCGGCTAACCCAAC 57.789 43.478 0.00 0.00 0.00 3.77
3565 4238 1.950954 GCTAACCCAACTGGAGCTTCC 60.951 57.143 0.00 0.00 37.39 3.46
3931 4692 2.018515 CCGGATAGGTAGCTAGCTAGC 58.981 57.143 35.87 35.87 44.63 3.42
3948 4709 6.240549 AGCTAGCTACTTAAACACATGGAT 57.759 37.500 17.69 0.00 0.00 3.41
3951 4712 7.711339 AGCTAGCTACTTAAACACATGGATTAC 59.289 37.037 17.69 0.00 0.00 1.89
4023 4784 1.531739 TTTGCAGGGTTCCGAATGGC 61.532 55.000 0.00 0.00 34.14 4.40
4147 4926 5.038651 TCGTTTCCTTTCCTTTCCTTGTA 57.961 39.130 0.00 0.00 0.00 2.41
4150 4929 6.206048 TCGTTTCCTTTCCTTTCCTTGTATTC 59.794 38.462 0.00 0.00 0.00 1.75
4158 4937 8.650143 TTTCCTTTCCTTGTATTCTTGCTAAT 57.350 30.769 0.00 0.00 0.00 1.73
4159 4938 9.747898 TTTCCTTTCCTTGTATTCTTGCTAATA 57.252 29.630 0.00 0.00 0.00 0.98
4160 4939 8.964476 TCCTTTCCTTGTATTCTTGCTAATAG 57.036 34.615 0.00 0.00 0.00 1.73
4161 4940 8.548877 TCCTTTCCTTGTATTCTTGCTAATAGT 58.451 33.333 0.00 0.00 0.00 2.12
4162 4941 9.832445 CCTTTCCTTGTATTCTTGCTAATAGTA 57.168 33.333 0.00 0.00 0.00 1.82
4199 4978 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
4206 4985 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
4207 4986 8.804688 TGTCCCAAAATATAAGAACGTTTTTG 57.195 30.769 13.87 12.16 37.14 2.44
4209 4988 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
4214 4993 9.673454 AAAATATAAGAACGTTTTTGACACTCC 57.327 29.630 13.87 0.00 0.00 3.85
4215 4994 7.972832 ATATAAGAACGTTTTTGACACTCCA 57.027 32.000 13.87 0.00 0.00 3.86
4216 4995 4.351131 AAGAACGTTTTTGACACTCCAC 57.649 40.909 0.46 0.00 0.00 4.02
4219 4998 5.365619 AGAACGTTTTTGACACTCCACTAT 58.634 37.500 0.46 0.00 0.00 2.12
4220 4999 5.465724 AGAACGTTTTTGACACTCCACTATC 59.534 40.000 0.46 0.00 0.00 2.08
4221 5000 3.739300 ACGTTTTTGACACTCCACTATCG 59.261 43.478 0.00 0.00 0.00 2.92
4223 5002 4.210537 CGTTTTTGACACTCCACTATCGTT 59.789 41.667 0.00 0.00 0.00 3.85
4229 5008 7.972832 TTGACACTCCACTATCGTTAAAAAT 57.027 32.000 0.00 0.00 0.00 1.82
4231 5010 6.128391 TGACACTCCACTATCGTTAAAAATGC 60.128 38.462 0.00 0.00 0.00 3.56
4258 5037 7.828223 TCTTATATTATGAGACGGAGGGAGTAC 59.172 40.741 0.00 0.00 0.00 2.73
4266 5059 3.972638 AGACGGAGGGAGTACATAGTAGA 59.027 47.826 0.00 0.00 0.00 2.59
4269 5062 3.075884 GGAGGGAGTACATAGTAGAGCG 58.924 54.545 0.00 0.00 0.00 5.03
4410 5209 0.105593 CATGAGGACCGTCATGGAGG 59.894 60.000 19.37 5.93 46.91 4.30
4504 5303 4.828296 GGCCCAGGTGCAGGATGG 62.828 72.222 0.00 5.03 35.86 3.51
4508 5307 2.672908 CAGGTGCAGGATGGCTCA 59.327 61.111 0.00 0.00 35.86 4.26
4509 5308 1.748122 CAGGTGCAGGATGGCTCAC 60.748 63.158 0.00 0.00 35.86 3.51
4510 5309 2.821366 GGTGCAGGATGGCTCACG 60.821 66.667 0.00 0.00 35.86 4.35
4573 5372 1.781555 CACAATCCGCACACGACTC 59.218 57.895 0.00 0.00 43.93 3.36
4577 5376 3.626680 ATCCGCACACGACTCACCG 62.627 63.158 0.00 0.00 43.93 4.94
4604 5414 4.836125 CCGCTAGGGTACGTCTAATTAA 57.164 45.455 6.02 0.00 0.00 1.40
4605 5415 5.382618 CCGCTAGGGTACGTCTAATTAAT 57.617 43.478 6.02 0.00 0.00 1.40
4606 5416 6.500684 CCGCTAGGGTACGTCTAATTAATA 57.499 41.667 6.02 0.00 0.00 0.98
4609 5419 7.308830 CCGCTAGGGTACGTCTAATTAATAACT 60.309 40.741 6.02 0.00 0.00 2.24
4610 5420 8.078596 CGCTAGGGTACGTCTAATTAATAACTT 58.921 37.037 0.00 0.00 0.00 2.66
4613 5423 8.429493 AGGGTACGTCTAATTAATAACTTTGC 57.571 34.615 0.00 0.00 0.00 3.68
4614 5424 7.496920 AGGGTACGTCTAATTAATAACTTTGCC 59.503 37.037 0.00 0.00 0.00 4.52
4615 5425 7.280652 GGGTACGTCTAATTAATAACTTTGCCA 59.719 37.037 0.00 0.00 0.00 4.92
4616 5426 8.118607 GGTACGTCTAATTAATAACTTTGCCAC 58.881 37.037 0.00 0.00 0.00 5.01
4634 5444 4.018870 TGCCACACATCTAATAACTTCCCA 60.019 41.667 0.00 0.00 0.00 4.37
4683 5590 7.255070 GCAACTAGGATCTGAATTCTGAAATCC 60.255 40.741 19.75 19.75 0.00 3.01
4712 5624 3.374220 TCTTGCAGGCTCACAAAAATG 57.626 42.857 0.00 0.00 0.00 2.32
4806 5745 4.150627 CCCGTGATGCATATAGAGTTTTCG 59.849 45.833 0.00 0.00 0.00 3.46
4860 5799 8.306680 TCAACTTCTCAAATTAAGTAGAACCG 57.693 34.615 0.00 0.00 34.91 4.44
4874 5816 9.992910 TTAAGTAGAACCGACTTTTTCTTTTTC 57.007 29.630 0.00 0.00 38.16 2.29
4875 5817 7.860918 AGTAGAACCGACTTTTTCTTTTTCT 57.139 32.000 0.00 0.00 33.96 2.52
4876 5818 8.277490 AGTAGAACCGACTTTTTCTTTTTCTT 57.723 30.769 0.00 0.00 33.96 2.52
4877 5819 8.396390 AGTAGAACCGACTTTTTCTTTTTCTTC 58.604 33.333 0.00 0.00 33.96 2.87
4878 5820 7.392494 AGAACCGACTTTTTCTTTTTCTTCT 57.608 32.000 0.00 0.00 0.00 2.85
4879 5821 7.827701 AGAACCGACTTTTTCTTTTTCTTCTT 58.172 30.769 0.00 0.00 0.00 2.52
4880 5822 7.968956 AGAACCGACTTTTTCTTTTTCTTCTTC 59.031 33.333 0.00 0.00 0.00 2.87
4881 5823 7.392494 ACCGACTTTTTCTTTTTCTTCTTCT 57.608 32.000 0.00 0.00 0.00 2.85
4882 5824 7.827701 ACCGACTTTTTCTTTTTCTTCTTCTT 58.172 30.769 0.00 0.00 0.00 2.52
4883 5825 7.968956 ACCGACTTTTTCTTTTTCTTCTTCTTC 59.031 33.333 0.00 0.00 0.00 2.87
4884 5826 8.184848 CCGACTTTTTCTTTTTCTTCTTCTTCT 58.815 33.333 0.00 0.00 0.00 2.85
4885 5827 9.561270 CGACTTTTTCTTTTTCTTCTTCTTCTT 57.439 29.630 0.00 0.00 0.00 2.52
4968 5910 7.418942 GGAATGCACTCCCATAAAACCATTATT 60.419 37.037 1.74 0.00 0.00 1.40
4985 5927 1.604604 ATTTGTTCCCACAGTGTCCG 58.395 50.000 0.00 0.00 33.22 4.79
5097 6044 6.436843 AAAAATAATGTTGCTACTCCCTCG 57.563 37.500 0.00 0.00 0.00 4.63
5158 6105 8.160521 TGAACTAAAGTTATACAAAAGCAGCA 57.839 30.769 0.00 0.00 38.56 4.41
5208 6155 8.673626 ATTTGTAACAGATTTGCTATTTCACG 57.326 30.769 0.00 0.00 0.00 4.35
5243 6190 7.706607 TGAAATAACCATCTCACATCTAAGTCG 59.293 37.037 0.00 0.00 0.00 4.18
5443 6412 0.036952 CCACTCACGTGCCTCTCATT 60.037 55.000 11.67 0.00 39.86 2.57
5444 6413 1.354040 CACTCACGTGCCTCTCATTC 58.646 55.000 11.67 0.00 33.82 2.67
5459 6432 3.330701 TCTCATTCAGTGGGCCTTAGTTT 59.669 43.478 4.53 0.00 0.00 2.66
5460 6433 3.686016 TCATTCAGTGGGCCTTAGTTTC 58.314 45.455 4.53 0.00 0.00 2.78
5759 6780 6.804677 TGTTTTTGCTCTGTCATATGTTTGT 58.195 32.000 1.90 0.00 0.00 2.83
5771 6792 7.643579 TGTCATATGTTTGTTTTGAATGTCGA 58.356 30.769 1.90 0.00 0.00 4.20
5804 6825 5.182950 TGATCGCTGGTTATTTTTGTCATGT 59.817 36.000 0.00 0.00 0.00 3.21
5824 6846 2.150218 CGCTATGTGTCGCGTCGTT 61.150 57.895 5.77 0.00 44.01 3.85
5900 6924 3.311110 GTGCGGTCTGGGGTCTCA 61.311 66.667 0.00 0.00 0.00 3.27
5913 6937 2.289565 GGGTCTCATTTCGGATTGGTC 58.710 52.381 0.00 0.00 0.00 4.02
5923 6947 3.194005 TCGGATTGGTCTGCTAATTCC 57.806 47.619 0.00 0.00 0.00 3.01
5961 6985 7.882179 AGTTACCAATGTTTTATCCAACTCAC 58.118 34.615 0.00 0.00 0.00 3.51
6003 7029 1.409064 TCTGAGTCGTGCTTGTTGTCT 59.591 47.619 0.00 0.00 0.00 3.41
6005 7031 3.067601 TCTGAGTCGTGCTTGTTGTCTTA 59.932 43.478 0.00 0.00 0.00 2.10
6006 7032 3.990092 TGAGTCGTGCTTGTTGTCTTAT 58.010 40.909 0.00 0.00 0.00 1.73
6010 7036 2.729360 TCGTGCTTGTTGTCTTATCGTG 59.271 45.455 0.00 0.00 0.00 4.35
6011 7037 2.475111 CGTGCTTGTTGTCTTATCGTGT 59.525 45.455 0.00 0.00 0.00 4.49
6052 7081 0.763652 AGCAGTGAGGCCTGATATGG 59.236 55.000 12.00 0.00 34.23 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.890996 GCACCAACCCTCCTCACTTG 60.891 60.000 0.00 0.00 0.00 3.16
105 106 7.071698 TGCCTCCTATAATTTCTCTCTGTTCAT 59.928 37.037 0.00 0.00 0.00 2.57
185 186 8.803799 TGTTTTAGCGAGAAAATGTTTCTTTTC 58.196 29.630 4.81 1.95 42.72 2.29
244 251 9.231297 TGAAGTAGTAAAAGAATTTGAGATGGG 57.769 33.333 0.00 0.00 39.02 4.00
375 382 7.417612 TCACAGCTTAAATCACAAGAAAGAAC 58.582 34.615 0.00 0.00 0.00 3.01
402 409 2.036346 ACTTTGATGCCTGGTTTCTTGC 59.964 45.455 0.00 0.00 0.00 4.01
454 461 1.869342 GCAAGCAACACCCAATCACAC 60.869 52.381 0.00 0.00 0.00 3.82
491 498 6.882678 TGCAATTGATAGGGATATGATGACAG 59.117 38.462 10.34 0.00 0.00 3.51
520 527 6.577103 TGTTGTTTTCTGGCATCAATGTTTA 58.423 32.000 0.00 0.00 0.00 2.01
546 553 3.576648 AGCTCGAGTGTAAGTAAGCAAC 58.423 45.455 15.13 0.00 32.22 4.17
694 702 4.990426 CCAAATGGTTGCTTTCTTTACTGG 59.010 41.667 0.00 0.00 33.01 4.00
717 725 1.588597 GGAAAAAGGGCTCAGCAGC 59.411 57.895 0.00 0.00 46.06 5.25
745 757 9.294030 GCAGATTCGTCAAAATAAAATCAGAAT 57.706 29.630 0.00 0.00 0.00 2.40
747 759 7.815641 TGCAGATTCGTCAAAATAAAATCAGA 58.184 30.769 0.00 0.00 0.00 3.27
767 779 7.307131 TCCACTATCTATCATCAAATGCAGA 57.693 36.000 0.00 0.00 0.00 4.26
921 1382 4.875713 GCGGGGCATCACGGGATT 62.876 66.667 0.00 0.00 0.00 3.01
944 1405 3.054503 CCACTGTGGCAGAGCAGC 61.055 66.667 14.87 0.00 36.26 5.25
1084 1549 6.367969 TGAATGATGATAATGAGATGAGTGCG 59.632 38.462 0.00 0.00 0.00 5.34
1116 1581 2.106338 TGCAAGAAATCTCACCTCACCA 59.894 45.455 0.00 0.00 0.00 4.17
1193 1674 6.597672 GGAATTAACCACACTATGTCATGTCA 59.402 38.462 0.00 0.00 0.00 3.58
1194 1675 6.823689 AGGAATTAACCACACTATGTCATGTC 59.176 38.462 0.00 0.00 0.00 3.06
1195 1676 6.721318 AGGAATTAACCACACTATGTCATGT 58.279 36.000 0.00 0.00 0.00 3.21
1196 1677 7.050377 AGAGGAATTAACCACACTATGTCATG 58.950 38.462 0.00 0.00 0.00 3.07
1197 1678 7.200434 AGAGGAATTAACCACACTATGTCAT 57.800 36.000 0.00 0.00 0.00 3.06
1318 1799 4.767255 GCCTGGCCTGACCGACTG 62.767 72.222 11.88 0.00 43.94 3.51
1334 1815 3.415087 ACAGGGATCTGGCCTGGC 61.415 66.667 11.05 11.05 44.99 4.85
1335 1816 2.593978 CACAGGGATCTGGCCTGG 59.406 66.667 17.63 0.00 44.99 4.45
1336 1817 2.124403 GCACAGGGATCTGGCCTG 60.124 66.667 13.28 13.28 44.99 4.85
1337 1818 3.790437 CGCACAGGGATCTGGCCT 61.790 66.667 3.32 0.00 44.99 5.19
1400 1888 4.086457 TGTGAGAGGAGCTTGTACATACA 58.914 43.478 0.00 0.00 0.00 2.29
1401 1889 4.720649 TGTGAGAGGAGCTTGTACATAC 57.279 45.455 0.00 0.00 0.00 2.39
1402 1890 5.939764 AATGTGAGAGGAGCTTGTACATA 57.060 39.130 0.00 0.00 30.71 2.29
1403 1891 4.833478 AATGTGAGAGGAGCTTGTACAT 57.167 40.909 0.00 0.00 31.56 2.29
1592 2100 0.663688 CAAGATGAGCAGAGCATGGC 59.336 55.000 0.00 0.00 0.00 4.40
2192 2714 4.056125 CCAGCGACCTCAGCGACA 62.056 66.667 0.00 0.00 40.04 4.35
2238 2760 1.671742 GTTCTTGAGGTCCGGCAGA 59.328 57.895 0.00 0.00 0.00 4.26
2615 3155 4.742201 TGGCCGAGAAGAGCACGC 62.742 66.667 0.00 0.00 0.00 5.34
2616 3156 2.048222 TTGGCCGAGAAGAGCACG 60.048 61.111 0.00 0.00 0.00 5.34
2960 3589 2.685388 GCAGCAGTATTCCTTCCCTTTC 59.315 50.000 0.00 0.00 0.00 2.62
2964 3593 3.118223 AGTTAGCAGCAGTATTCCTTCCC 60.118 47.826 0.00 0.00 0.00 3.97
2974 3603 3.753294 ACACTACAAGTTAGCAGCAGT 57.247 42.857 0.00 0.00 0.00 4.40
3001 3632 7.859875 CCTGTTTGTTTGTTTGTTTGATTGTTT 59.140 29.630 0.00 0.00 0.00 2.83
3002 3633 7.012799 ACCTGTTTGTTTGTTTGTTTGATTGTT 59.987 29.630 0.00 0.00 0.00 2.83
3003 3634 6.484977 ACCTGTTTGTTTGTTTGTTTGATTGT 59.515 30.769 0.00 0.00 0.00 2.71
3004 3635 6.896969 ACCTGTTTGTTTGTTTGTTTGATTG 58.103 32.000 0.00 0.00 0.00 2.67
3005 3636 7.503521 AACCTGTTTGTTTGTTTGTTTGATT 57.496 28.000 0.00 0.00 0.00 2.57
3006 3637 7.657761 TGTAACCTGTTTGTTTGTTTGTTTGAT 59.342 29.630 0.00 0.00 0.00 2.57
3007 3638 6.984474 TGTAACCTGTTTGTTTGTTTGTTTGA 59.016 30.769 0.00 0.00 0.00 2.69
3008 3639 7.178712 TGTAACCTGTTTGTTTGTTTGTTTG 57.821 32.000 0.00 0.00 0.00 2.93
3194 3840 8.741101 CTCATGAGTTGAGCACTATAAGATAC 57.259 38.462 14.95 0.00 45.16 2.24
3491 4141 2.044793 AACAATGGAGGTGAGGGAGA 57.955 50.000 0.00 0.00 0.00 3.71
3534 4198 4.989168 CAGTTGGGTTAGCCGATTATAGAC 59.011 45.833 0.00 0.00 34.97 2.59
3537 4201 3.968649 TCCAGTTGGGTTAGCCGATTATA 59.031 43.478 0.00 0.00 38.11 0.98
3542 4206 1.980052 CTCCAGTTGGGTTAGCCGA 59.020 57.895 0.00 0.00 38.11 5.54
3543 4207 1.745489 GCTCCAGTTGGGTTAGCCG 60.745 63.158 0.00 0.00 38.11 5.52
3545 4209 1.454201 GAAGCTCCAGTTGGGTTAGC 58.546 55.000 0.00 0.43 38.11 3.09
3555 4228 2.093553 CCTTCTGAAGAGGAAGCTCCAG 60.094 54.545 18.68 0.00 39.61 3.86
3565 4238 2.933056 GCCTTCCGTTCCTTCTGAAGAG 60.933 54.545 18.68 8.93 37.07 2.85
3924 4685 6.785337 TCCATGTGTTTAAGTAGCTAGCTA 57.215 37.500 20.67 20.67 0.00 3.32
3926 4687 6.927294 AATCCATGTGTTTAAGTAGCTAGC 57.073 37.500 6.62 6.62 0.00 3.42
3927 4688 9.250624 GAGTAATCCATGTGTTTAAGTAGCTAG 57.749 37.037 0.00 0.00 0.00 3.42
3928 4689 8.978472 AGAGTAATCCATGTGTTTAAGTAGCTA 58.022 33.333 0.00 0.00 0.00 3.32
3929 4690 7.852263 AGAGTAATCCATGTGTTTAAGTAGCT 58.148 34.615 0.00 0.00 0.00 3.32
4023 4784 7.793888 CCAAAATCGTACATGTCAATCTTATCG 59.206 37.037 0.00 0.00 0.00 2.92
4162 4941 9.081508 TGGGACAGAGGGAGTAGTATATAATAT 57.918 37.037 0.00 0.00 0.00 1.28
4163 4942 8.472682 TGGGACAGAGGGAGTAGTATATAATA 57.527 38.462 0.00 0.00 0.00 0.98
4164 4943 7.358255 TGGGACAGAGGGAGTAGTATATAAT 57.642 40.000 0.00 0.00 0.00 1.28
4165 4944 6.791847 TGGGACAGAGGGAGTAGTATATAA 57.208 41.667 0.00 0.00 0.00 0.98
4166 4945 6.791847 TTGGGACAGAGGGAGTAGTATATA 57.208 41.667 0.00 0.00 42.39 0.86
4167 4946 5.681494 TTGGGACAGAGGGAGTAGTATAT 57.319 43.478 0.00 0.00 42.39 0.86
4168 4947 5.476950 TTTGGGACAGAGGGAGTAGTATA 57.523 43.478 0.00 0.00 42.39 1.47
4169 4948 4.348020 TTTGGGACAGAGGGAGTAGTAT 57.652 45.455 0.00 0.00 42.39 2.12
4170 4949 3.839323 TTTGGGACAGAGGGAGTAGTA 57.161 47.619 0.00 0.00 42.39 1.82
4172 4951 5.896073 ATATTTTGGGACAGAGGGAGTAG 57.104 43.478 0.00 0.00 42.39 2.57
4177 4956 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
4179 4958 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
4182 4961 8.630917 TCAAAAACGTTCTTATATTTTGGGACA 58.369 29.630 15.53 0.00 39.94 4.02
4199 4978 3.739300 CGATAGTGGAGTGTCAAAAACGT 59.261 43.478 0.00 0.00 0.00 3.99
4229 5008 5.419155 CCCTCCGTCTCATAATATAAGAGCA 59.581 44.000 0.00 0.00 0.00 4.26
4231 5010 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
4244 5023 3.972638 TCTACTATGTACTCCCTCCGTCT 59.027 47.826 0.00 0.00 0.00 4.18
4247 5026 3.075884 GCTCTACTATGTACTCCCTCCG 58.924 54.545 0.00 0.00 0.00 4.63
4248 5027 3.075884 CGCTCTACTATGTACTCCCTCC 58.924 54.545 0.00 0.00 0.00 4.30
4258 5037 5.049612 TCCGATTACAACTCGCTCTACTATG 60.050 44.000 0.00 0.00 34.84 2.23
4266 5059 4.062991 ACTTTTTCCGATTACAACTCGCT 58.937 39.130 0.00 0.00 34.84 4.93
4269 5062 6.416750 CCACAAACTTTTTCCGATTACAACTC 59.583 38.462 0.00 0.00 0.00 3.01
4573 5372 4.143333 CCTAGCGGTGGGTCGGTG 62.143 72.222 9.13 0.00 41.16 4.94
4603 5413 9.243105 AGTTATTAGATGTGTGGCAAAGTTATT 57.757 29.630 0.00 0.00 0.00 1.40
4604 5414 8.807948 AGTTATTAGATGTGTGGCAAAGTTAT 57.192 30.769 0.00 0.00 0.00 1.89
4605 5415 8.630054 AAGTTATTAGATGTGTGGCAAAGTTA 57.370 30.769 0.00 0.00 0.00 2.24
4606 5416 7.309194 GGAAGTTATTAGATGTGTGGCAAAGTT 60.309 37.037 0.00 0.00 0.00 2.66
4609 5419 5.417580 GGGAAGTTATTAGATGTGTGGCAAA 59.582 40.000 0.00 0.00 0.00 3.68
4610 5420 4.947388 GGGAAGTTATTAGATGTGTGGCAA 59.053 41.667 0.00 0.00 0.00 4.52
4612 5422 4.523083 TGGGAAGTTATTAGATGTGTGGC 58.477 43.478 0.00 0.00 0.00 5.01
4613 5423 6.828273 TCATTGGGAAGTTATTAGATGTGTGG 59.172 38.462 0.00 0.00 0.00 4.17
4614 5424 7.864108 TCATTGGGAAGTTATTAGATGTGTG 57.136 36.000 0.00 0.00 0.00 3.82
4615 5425 8.274322 TCATCATTGGGAAGTTATTAGATGTGT 58.726 33.333 0.00 0.00 33.83 3.72
4616 5426 8.681486 TCATCATTGGGAAGTTATTAGATGTG 57.319 34.615 0.00 0.00 33.83 3.21
4634 5444 6.153851 TGCACATTTCTTTGGAGATCATCATT 59.846 34.615 0.00 0.00 0.00 2.57
4683 5590 0.752009 AGCCTGCAAGATGAGCATGG 60.752 55.000 0.00 0.00 41.82 3.66
4712 5624 2.135139 CATGATGATGCTTGGCAATGC 58.865 47.619 0.00 7.54 43.62 3.56
4806 5745 0.179045 ATATCCAGTGGCGTCTTGGC 60.179 55.000 3.51 0.00 45.12 4.52
4874 5816 7.938563 TTCTCGAAAGAAGAAGAAGAAGAAG 57.061 36.000 0.00 0.00 41.32 2.85
4875 5817 8.894768 ATTTCTCGAAAGAAGAAGAAGAAGAA 57.105 30.769 0.00 0.00 42.36 2.52
4876 5818 8.364142 AGATTTCTCGAAAGAAGAAGAAGAAGA 58.636 33.333 0.00 0.00 42.36 2.87
4877 5819 8.532977 AGATTTCTCGAAAGAAGAAGAAGAAG 57.467 34.615 0.00 0.00 42.36 2.85
4878 5820 7.600752 GGAGATTTCTCGAAAGAAGAAGAAGAA 59.399 37.037 1.67 0.00 42.36 2.52
4879 5821 7.093992 GGAGATTTCTCGAAAGAAGAAGAAGA 58.906 38.462 1.67 0.00 42.36 2.87
4880 5822 6.870965 TGGAGATTTCTCGAAAGAAGAAGAAG 59.129 38.462 1.67 0.00 42.36 2.85
4881 5823 6.759272 TGGAGATTTCTCGAAAGAAGAAGAA 58.241 36.000 1.67 0.00 42.36 2.52
4882 5824 6.346477 TGGAGATTTCTCGAAAGAAGAAGA 57.654 37.500 1.67 0.00 42.36 2.87
4883 5825 7.608308 ATTGGAGATTTCTCGAAAGAAGAAG 57.392 36.000 8.75 0.00 42.47 2.85
4884 5826 8.531982 TCTATTGGAGATTTCTCGAAAGAAGAA 58.468 33.333 8.75 0.00 42.47 2.52
4885 5827 8.067751 TCTATTGGAGATTTCTCGAAAGAAGA 57.932 34.615 8.75 9.11 42.47 2.87
4886 5828 8.599774 GTTCTATTGGAGATTTCTCGAAAGAAG 58.400 37.037 18.48 12.99 42.47 2.85
4887 5829 7.275779 CGTTCTATTGGAGATTTCTCGAAAGAA 59.724 37.037 8.75 13.54 42.47 2.52
4893 5835 5.583495 AGTCGTTCTATTGGAGATTTCTCG 58.417 41.667 1.67 0.00 43.76 4.04
4968 5910 1.147376 CCGGACACTGTGGGAACAA 59.853 57.895 13.09 0.00 46.06 2.83
5033 5975 7.094631 TGGAATATTACAATATCCGGTTCTCG 58.905 38.462 0.00 0.00 32.95 4.04
5131 6078 9.458374 GCTGCTTTTGTATAACTTTAGTTCAAA 57.542 29.630 0.00 1.85 39.31 2.69
5243 6190 3.971245 ACAGGTGATCCAAAGACTCTC 57.029 47.619 0.00 0.00 35.89 3.20
5321 6268 2.008168 CATGAGCTACGCGCGAGAG 61.008 63.158 39.36 30.83 45.59 3.20
5443 6412 3.876309 AAAGAAACTAAGGCCCACTGA 57.124 42.857 0.00 0.00 0.00 3.41
5444 6413 3.888930 TGAAAAGAAACTAAGGCCCACTG 59.111 43.478 0.00 0.00 0.00 3.66
5459 6432 0.878523 CACAGCCGACGGTGAAAAGA 60.879 55.000 16.73 0.00 43.78 2.52
5460 6433 1.157870 ACACAGCCGACGGTGAAAAG 61.158 55.000 16.73 3.84 43.78 2.27
5741 6762 6.631971 TCAAAACAAACATATGACAGAGCA 57.368 33.333 10.38 0.00 0.00 4.26
5759 6780 4.518590 TCAGGATTTGCTCGACATTCAAAA 59.481 37.500 0.00 0.00 34.00 2.44
5771 6792 0.254178 ACCAGCGATCAGGATTTGCT 59.746 50.000 3.10 4.68 34.53 3.91
5824 6846 4.202172 TGTCGACAAGTAGACACCAATCAA 60.202 41.667 17.62 0.00 39.65 2.57
5900 6924 4.580580 GGAATTAGCAGACCAATCCGAAAT 59.419 41.667 0.00 0.00 0.00 2.17
5913 6937 9.566432 AACTCTTATTTAGATGGGAATTAGCAG 57.434 33.333 0.00 0.00 30.92 4.24
5941 6965 7.970061 CAGTATGTGAGTTGGATAAAACATTGG 59.030 37.037 0.00 0.00 32.21 3.16
5961 6985 7.753580 TCAGAAACACGTGTATCTAACAGTATG 59.246 37.037 23.69 5.91 39.29 2.39
6003 7029 7.662258 TGAGGGATAAACAGAAAAACACGATAA 59.338 33.333 0.00 0.00 0.00 1.75
6005 7031 6.001460 TGAGGGATAAACAGAAAAACACGAT 58.999 36.000 0.00 0.00 0.00 3.73
6006 7032 5.369833 TGAGGGATAAACAGAAAAACACGA 58.630 37.500 0.00 0.00 0.00 4.35
6010 7036 6.808704 GCTTCATGAGGGATAAACAGAAAAAC 59.191 38.462 6.99 0.00 0.00 2.43
6011 7037 6.493115 TGCTTCATGAGGGATAAACAGAAAAA 59.507 34.615 6.99 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.