Multiple sequence alignment - TraesCS2D01G247800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G247800 chr2D 100.000 2318 0 0 1 2318 291767810 291765493 0.000000e+00 4281
1 TraesCS2D01G247800 chr5A 97.602 1793 40 3 527 2316 300073505 300075297 0.000000e+00 3070
2 TraesCS2D01G247800 chr5A 97.266 1792 46 3 527 2316 16602395 16600605 0.000000e+00 3035
3 TraesCS2D01G247800 chr5A 97.230 361 10 0 1 361 420179715 420179355 1.520000e-171 612
4 TraesCS2D01G247800 chr5A 96.953 361 11 0 1 361 16538593 16538233 7.080000e-170 606
5 TraesCS2D01G247800 chrUn 97.546 1793 41 3 527 2316 189393065 189394857 0.000000e+00 3064
6 TraesCS2D01G247800 chrUn 96.953 361 11 0 1 361 222879195 222878835 7.080000e-170 606
7 TraesCS2D01G247800 chrUn 96.953 361 11 0 1 361 281719807 281720167 7.080000e-170 606
8 TraesCS2D01G247800 chr2A 97.490 1793 42 3 527 2316 618279430 618277638 0.000000e+00 3059
9 TraesCS2D01G247800 chr5B 97.436 1794 42 3 527 2316 679659422 679661215 0.000000e+00 3055
10 TraesCS2D01G247800 chr7D 97.267 1793 46 3 527 2316 626697964 626696172 0.000000e+00 3037
11 TraesCS2D01G247800 chr7D 97.156 1793 48 3 527 2316 203555820 203554028 0.000000e+00 3025
12 TraesCS2D01G247800 chr6A 97.266 1792 47 2 527 2316 289129157 289130948 0.000000e+00 3037
13 TraesCS2D01G247800 chr7B 97.213 1794 46 4 527 2316 743086724 743088517 0.000000e+00 3033
14 TraesCS2D01G247800 chr7B 97.230 361 10 0 1 361 716778620 716778260 1.520000e-171 612
15 TraesCS2D01G247800 chr7B 97.230 361 10 0 1 361 716910436 716910076 1.520000e-171 612
16 TraesCS2D01G247800 chr7B 97.230 361 10 0 1 361 742954727 742955087 1.520000e-171 612
17 TraesCS2D01G247800 chr4B 96.953 361 11 0 1 361 209224537 209224177 7.080000e-170 606
18 TraesCS2D01G247800 chr2B 96.953 361 11 0 1 361 391172455 391172095 7.080000e-170 606


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G247800 chr2D 291765493 291767810 2317 True 4281 4281 100.000 1 2318 1 chr2D.!!$R1 2317
1 TraesCS2D01G247800 chr5A 300073505 300075297 1792 False 3070 3070 97.602 527 2316 1 chr5A.!!$F1 1789
2 TraesCS2D01G247800 chr5A 16600605 16602395 1790 True 3035 3035 97.266 527 2316 1 chr5A.!!$R2 1789
3 TraesCS2D01G247800 chrUn 189393065 189394857 1792 False 3064 3064 97.546 527 2316 1 chrUn.!!$F1 1789
4 TraesCS2D01G247800 chr2A 618277638 618279430 1792 True 3059 3059 97.490 527 2316 1 chr2A.!!$R1 1789
5 TraesCS2D01G247800 chr5B 679659422 679661215 1793 False 3055 3055 97.436 527 2316 1 chr5B.!!$F1 1789
6 TraesCS2D01G247800 chr7D 626696172 626697964 1792 True 3037 3037 97.267 527 2316 1 chr7D.!!$R2 1789
7 TraesCS2D01G247800 chr7D 203554028 203555820 1792 True 3025 3025 97.156 527 2316 1 chr7D.!!$R1 1789
8 TraesCS2D01G247800 chr6A 289129157 289130948 1791 False 3037 3037 97.266 527 2316 1 chr6A.!!$F1 1789
9 TraesCS2D01G247800 chr7B 743086724 743088517 1793 False 3033 3033 97.213 527 2316 1 chr7B.!!$F2 1789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.034896 TCCCGCAGTCAAAACTCTCC 59.965 55.0 0.0 0.0 31.71 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2102 0.321919 ACGCGTGGGTGAGTAGAGTA 60.322 55.0 12.93 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.668510 TTATCAGTTTCATCCTCTTTATGAGC 57.331 34.615 0.00 0.00 41.35 4.26
50 51 5.431765 TCAGTTTCATCCTCTTTATGAGCC 58.568 41.667 0.00 0.00 41.35 4.70
51 52 5.190528 TCAGTTTCATCCTCTTTATGAGCCT 59.809 40.000 0.00 0.00 41.35 4.58
52 53 5.296283 CAGTTTCATCCTCTTTATGAGCCTG 59.704 44.000 0.00 0.00 41.35 4.85
53 54 5.190528 AGTTTCATCCTCTTTATGAGCCTGA 59.809 40.000 0.00 0.00 41.35 3.86
54 55 4.952071 TCATCCTCTTTATGAGCCTGAG 57.048 45.455 0.00 0.00 41.35 3.35
55 56 4.550669 TCATCCTCTTTATGAGCCTGAGA 58.449 43.478 0.00 0.00 41.35 3.27
56 57 5.153675 TCATCCTCTTTATGAGCCTGAGAT 58.846 41.667 0.00 0.00 41.35 2.75
57 58 5.245751 TCATCCTCTTTATGAGCCTGAGATC 59.754 44.000 0.00 0.00 41.35 2.75
58 59 4.550669 TCCTCTTTATGAGCCTGAGATCA 58.449 43.478 0.00 0.00 43.83 2.92
65 66 3.264922 TGAGCCTGAGATCATATGGGA 57.735 47.619 2.13 0.00 32.25 4.37
66 67 3.590714 TGAGCCTGAGATCATATGGGAA 58.409 45.455 2.13 0.00 32.25 3.97
67 68 3.975982 TGAGCCTGAGATCATATGGGAAA 59.024 43.478 2.13 0.00 32.25 3.13
68 69 4.413189 TGAGCCTGAGATCATATGGGAAAA 59.587 41.667 2.13 0.00 32.25 2.29
69 70 4.723309 AGCCTGAGATCATATGGGAAAAC 58.277 43.478 2.13 0.00 0.00 2.43
70 71 4.166725 AGCCTGAGATCATATGGGAAAACA 59.833 41.667 2.13 0.00 0.00 2.83
71 72 4.889409 GCCTGAGATCATATGGGAAAACAA 59.111 41.667 2.13 0.00 0.00 2.83
72 73 5.537674 GCCTGAGATCATATGGGAAAACAAT 59.462 40.000 2.13 0.00 0.00 2.71
73 74 6.041296 GCCTGAGATCATATGGGAAAACAATT 59.959 38.462 2.13 0.00 0.00 2.32
74 75 7.231317 GCCTGAGATCATATGGGAAAACAATTA 59.769 37.037 2.13 0.00 0.00 1.40
75 76 9.305555 CCTGAGATCATATGGGAAAACAATTAT 57.694 33.333 2.13 0.00 0.00 1.28
77 78 9.865152 TGAGATCATATGGGAAAACAATTATCA 57.135 29.630 2.13 0.00 0.00 2.15
116 117 8.802267 AGATTATATACTCTCAAGGAAGTGAGC 58.198 37.037 0.00 0.00 44.01 4.26
117 118 5.799827 ATATACTCTCAAGGAAGTGAGCC 57.200 43.478 0.00 0.00 44.01 4.70
118 119 1.722034 ACTCTCAAGGAAGTGAGCCA 58.278 50.000 0.00 0.00 44.01 4.75
119 120 1.346068 ACTCTCAAGGAAGTGAGCCAC 59.654 52.381 0.00 0.00 44.01 5.01
121 122 1.620819 TCTCAAGGAAGTGAGCCACTC 59.379 52.381 8.09 3.37 44.62 3.51
122 123 1.345741 CTCAAGGAAGTGAGCCACTCA 59.654 52.381 8.09 0.00 44.62 3.41
123 124 1.768275 TCAAGGAAGTGAGCCACTCAA 59.232 47.619 8.09 0.00 44.62 3.02
124 125 1.876156 CAAGGAAGTGAGCCACTCAAC 59.124 52.381 8.09 3.16 44.62 3.18
125 126 0.398318 AGGAAGTGAGCCACTCAACC 59.602 55.000 8.09 11.11 44.62 3.77
126 127 0.398318 GGAAGTGAGCCACTCAACCT 59.602 55.000 8.09 0.00 44.62 3.50
127 128 1.609320 GGAAGTGAGCCACTCAACCTC 60.609 57.143 8.09 2.89 44.62 3.85
128 129 1.070758 GAAGTGAGCCACTCAACCTCA 59.929 52.381 8.09 0.00 44.62 3.86
129 130 0.683973 AGTGAGCCACTCAACCTCAG 59.316 55.000 0.00 0.00 41.21 3.35
130 131 0.952984 GTGAGCCACTCAACCTCAGC 60.953 60.000 0.00 0.00 42.46 4.26
131 132 1.376553 GAGCCACTCAACCTCAGCC 60.377 63.158 0.00 0.00 0.00 4.85
132 133 1.835927 GAGCCACTCAACCTCAGCCT 61.836 60.000 0.00 0.00 0.00 4.58
133 134 0.545309 AGCCACTCAACCTCAGCCTA 60.545 55.000 0.00 0.00 0.00 3.93
134 135 0.107945 GCCACTCAACCTCAGCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
135 136 0.107945 CCACTCAACCTCAGCCTAGC 60.108 60.000 0.00 0.00 0.00 3.42
136 137 0.459237 CACTCAACCTCAGCCTAGCG 60.459 60.000 0.00 0.00 0.00 4.26
137 138 1.142748 CTCAACCTCAGCCTAGCGG 59.857 63.158 0.00 0.00 0.00 5.52
138 139 1.304962 TCAACCTCAGCCTAGCGGA 60.305 57.895 0.00 0.00 0.00 5.54
139 140 0.687757 TCAACCTCAGCCTAGCGGAT 60.688 55.000 0.00 0.00 31.76 4.18
140 141 0.179000 CAACCTCAGCCTAGCGGATT 59.821 55.000 0.00 0.00 31.76 3.01
141 142 0.466124 AACCTCAGCCTAGCGGATTC 59.534 55.000 0.00 0.00 31.76 2.52
142 143 0.397816 ACCTCAGCCTAGCGGATTCT 60.398 55.000 0.00 0.00 31.76 2.40
143 144 0.316841 CCTCAGCCTAGCGGATTCTC 59.683 60.000 0.00 0.00 31.76 2.87
144 145 0.316841 CTCAGCCTAGCGGATTCTCC 59.683 60.000 0.00 0.00 31.76 3.71
145 146 1.115930 TCAGCCTAGCGGATTCTCCC 61.116 60.000 0.00 0.00 31.13 4.30
146 147 1.839296 AGCCTAGCGGATTCTCCCC 60.839 63.158 0.00 0.00 31.13 4.81
153 154 2.512973 CGGATTCTCCCCGTAACCT 58.487 57.895 0.00 0.00 41.91 3.50
154 155 0.104304 CGGATTCTCCCCGTAACCTG 59.896 60.000 0.00 0.00 41.91 4.00
155 156 0.468648 GGATTCTCCCCGTAACCTGG 59.531 60.000 0.00 0.00 0.00 4.45
156 157 1.492764 GATTCTCCCCGTAACCTGGA 58.507 55.000 0.00 0.00 0.00 3.86
157 158 1.138464 GATTCTCCCCGTAACCTGGAC 59.862 57.143 0.00 0.00 0.00 4.02
158 159 0.906282 TTCTCCCCGTAACCTGGACC 60.906 60.000 0.00 0.00 0.00 4.46
159 160 1.305887 CTCCCCGTAACCTGGACCT 60.306 63.158 0.00 0.00 0.00 3.85
160 161 1.611261 TCCCCGTAACCTGGACCTG 60.611 63.158 0.00 0.00 0.00 4.00
161 162 2.267961 CCCGTAACCTGGACCTGC 59.732 66.667 0.00 0.00 0.00 4.85
162 163 2.267961 CCGTAACCTGGACCTGCC 59.732 66.667 0.00 0.00 37.10 4.85
163 164 2.291043 CCGTAACCTGGACCTGCCT 61.291 63.158 0.00 0.00 37.63 4.75
164 165 1.218316 CGTAACCTGGACCTGCCTC 59.782 63.158 0.00 0.00 37.63 4.70
165 166 1.258445 CGTAACCTGGACCTGCCTCT 61.258 60.000 0.00 0.00 37.63 3.69
166 167 0.537653 GTAACCTGGACCTGCCTCTC 59.462 60.000 0.00 0.00 37.63 3.20
167 168 0.617820 TAACCTGGACCTGCCTCTCC 60.618 60.000 0.00 0.00 37.63 3.71
168 169 3.086600 CCTGGACCTGCCTCTCCC 61.087 72.222 0.00 0.00 37.63 4.30
169 170 3.465403 CTGGACCTGCCTCTCCCG 61.465 72.222 0.00 0.00 37.63 5.14
175 176 3.385384 CTGCCTCTCCCGCAGTCA 61.385 66.667 1.65 0.00 46.97 3.41
176 177 2.922503 TGCCTCTCCCGCAGTCAA 60.923 61.111 0.00 0.00 0.00 3.18
177 178 2.347490 GCCTCTCCCGCAGTCAAA 59.653 61.111 0.00 0.00 0.00 2.69
178 179 1.302511 GCCTCTCCCGCAGTCAAAA 60.303 57.895 0.00 0.00 0.00 2.44
179 180 1.578206 GCCTCTCCCGCAGTCAAAAC 61.578 60.000 0.00 0.00 0.00 2.43
180 181 0.035458 CCTCTCCCGCAGTCAAAACT 59.965 55.000 0.00 0.00 35.60 2.66
181 182 1.433534 CTCTCCCGCAGTCAAAACTC 58.566 55.000 0.00 0.00 31.71 3.01
182 183 1.001406 CTCTCCCGCAGTCAAAACTCT 59.999 52.381 0.00 0.00 31.71 3.24
183 184 1.000955 TCTCCCGCAGTCAAAACTCTC 59.999 52.381 0.00 0.00 31.71 3.20
184 185 0.034896 TCCCGCAGTCAAAACTCTCC 59.965 55.000 0.00 0.00 31.71 3.71
185 186 0.035458 CCCGCAGTCAAAACTCTCCT 59.965 55.000 0.00 0.00 31.71 3.69
186 187 1.433534 CCGCAGTCAAAACTCTCCTC 58.566 55.000 0.00 0.00 31.71 3.71
187 188 1.001406 CCGCAGTCAAAACTCTCCTCT 59.999 52.381 0.00 0.00 31.71 3.69
188 189 2.231478 CCGCAGTCAAAACTCTCCTCTA 59.769 50.000 0.00 0.00 31.71 2.43
189 190 3.246619 CGCAGTCAAAACTCTCCTCTAC 58.753 50.000 0.00 0.00 31.71 2.59
190 191 3.305403 CGCAGTCAAAACTCTCCTCTACA 60.305 47.826 0.00 0.00 31.71 2.74
191 192 4.241681 GCAGTCAAAACTCTCCTCTACAG 58.758 47.826 0.00 0.00 31.71 2.74
192 193 4.241681 CAGTCAAAACTCTCCTCTACAGC 58.758 47.826 0.00 0.00 31.71 4.40
193 194 3.259625 AGTCAAAACTCTCCTCTACAGCC 59.740 47.826 0.00 0.00 0.00 4.85
194 195 2.567615 TCAAAACTCTCCTCTACAGCCC 59.432 50.000 0.00 0.00 0.00 5.19
195 196 1.574263 AAACTCTCCTCTACAGCCCC 58.426 55.000 0.00 0.00 0.00 5.80
196 197 0.713579 AACTCTCCTCTACAGCCCCT 59.286 55.000 0.00 0.00 0.00 4.79
197 198 0.260523 ACTCTCCTCTACAGCCCCTC 59.739 60.000 0.00 0.00 0.00 4.30
198 199 0.555769 CTCTCCTCTACAGCCCCTCT 59.444 60.000 0.00 0.00 0.00 3.69
222 223 2.185608 GCCAGAAGCCTCGTCTCC 59.814 66.667 0.00 0.00 34.35 3.71
223 224 2.355193 GCCAGAAGCCTCGTCTCCT 61.355 63.158 0.00 0.00 34.35 3.69
224 225 1.893919 GCCAGAAGCCTCGTCTCCTT 61.894 60.000 0.00 0.00 34.35 3.36
225 226 0.610687 CCAGAAGCCTCGTCTCCTTT 59.389 55.000 0.00 0.00 0.00 3.11
226 227 1.825474 CCAGAAGCCTCGTCTCCTTTA 59.175 52.381 0.00 0.00 0.00 1.85
227 228 2.233922 CCAGAAGCCTCGTCTCCTTTAA 59.766 50.000 0.00 0.00 0.00 1.52
228 229 3.254892 CAGAAGCCTCGTCTCCTTTAAC 58.745 50.000 0.00 0.00 0.00 2.01
229 230 3.056465 CAGAAGCCTCGTCTCCTTTAACT 60.056 47.826 0.00 0.00 0.00 2.24
230 231 3.056465 AGAAGCCTCGTCTCCTTTAACTG 60.056 47.826 0.00 0.00 0.00 3.16
231 232 2.526432 AGCCTCGTCTCCTTTAACTGA 58.474 47.619 0.00 0.00 0.00 3.41
232 233 3.100671 AGCCTCGTCTCCTTTAACTGAT 58.899 45.455 0.00 0.00 0.00 2.90
233 234 3.515901 AGCCTCGTCTCCTTTAACTGATT 59.484 43.478 0.00 0.00 0.00 2.57
234 235 3.866327 GCCTCGTCTCCTTTAACTGATTC 59.134 47.826 0.00 0.00 0.00 2.52
235 236 4.620803 GCCTCGTCTCCTTTAACTGATTCA 60.621 45.833 0.00 0.00 0.00 2.57
236 237 5.479306 CCTCGTCTCCTTTAACTGATTCAA 58.521 41.667 0.00 0.00 0.00 2.69
237 238 5.578727 CCTCGTCTCCTTTAACTGATTCAAG 59.421 44.000 0.00 0.00 0.00 3.02
238 239 6.097915 TCGTCTCCTTTAACTGATTCAAGT 57.902 37.500 0.00 0.00 0.00 3.16
239 240 5.926542 TCGTCTCCTTTAACTGATTCAAGTG 59.073 40.000 0.00 0.00 0.00 3.16
240 241 5.926542 CGTCTCCTTTAACTGATTCAAGTGA 59.073 40.000 0.00 0.00 0.00 3.41
241 242 6.591834 CGTCTCCTTTAACTGATTCAAGTGAT 59.408 38.462 0.00 0.00 0.00 3.06
242 243 7.118390 CGTCTCCTTTAACTGATTCAAGTGATT 59.882 37.037 0.00 0.00 0.00 2.57
243 244 8.447053 GTCTCCTTTAACTGATTCAAGTGATTC 58.553 37.037 0.00 0.00 0.00 2.52
244 245 8.156820 TCTCCTTTAACTGATTCAAGTGATTCA 58.843 33.333 5.92 5.92 34.48 2.57
295 296 9.667107 AAAATTGGATTATCTAGAAACTCGTGA 57.333 29.630 0.00 0.00 0.00 4.35
296 297 9.667107 AAATTGGATTATCTAGAAACTCGTGAA 57.333 29.630 0.00 0.00 0.00 3.18
297 298 9.667107 AATTGGATTATCTAGAAACTCGTGAAA 57.333 29.630 0.00 0.00 0.00 2.69
298 299 9.667107 ATTGGATTATCTAGAAACTCGTGAAAA 57.333 29.630 0.00 0.00 0.00 2.29
299 300 9.667107 TTGGATTATCTAGAAACTCGTGAAAAT 57.333 29.630 0.00 0.00 0.00 1.82
300 301 9.098355 TGGATTATCTAGAAACTCGTGAAAATG 57.902 33.333 0.00 0.00 0.00 2.32
301 302 9.314321 GGATTATCTAGAAACTCGTGAAAATGA 57.686 33.333 0.00 0.00 0.00 2.57
303 304 9.653287 ATTATCTAGAAACTCGTGAAAATGACA 57.347 29.630 0.00 0.00 0.00 3.58
304 305 7.962964 ATCTAGAAACTCGTGAAAATGACAA 57.037 32.000 0.00 0.00 0.00 3.18
305 306 7.173863 TCTAGAAACTCGTGAAAATGACAAC 57.826 36.000 0.00 0.00 0.00 3.32
306 307 4.833126 AGAAACTCGTGAAAATGACAACG 58.167 39.130 0.00 0.00 0.00 4.10
307 308 2.663279 ACTCGTGAAAATGACAACGC 57.337 45.000 0.00 0.00 0.00 4.84
308 309 2.210116 ACTCGTGAAAATGACAACGCT 58.790 42.857 0.00 0.00 0.00 5.07
309 310 3.386486 ACTCGTGAAAATGACAACGCTA 58.614 40.909 0.00 0.00 0.00 4.26
310 311 3.805422 ACTCGTGAAAATGACAACGCTAA 59.195 39.130 0.00 0.00 0.00 3.09
311 312 4.271533 ACTCGTGAAAATGACAACGCTAAA 59.728 37.500 0.00 0.00 0.00 1.85
312 313 5.049680 ACTCGTGAAAATGACAACGCTAAAT 60.050 36.000 0.00 0.00 0.00 1.40
313 314 5.379003 TCGTGAAAATGACAACGCTAAATC 58.621 37.500 0.00 0.00 0.00 2.17
314 315 4.257447 CGTGAAAATGACAACGCTAAATCG 59.743 41.667 0.00 0.00 0.00 3.34
315 316 5.379003 GTGAAAATGACAACGCTAAATCGA 58.621 37.500 0.00 0.00 0.00 3.59
316 317 5.849081 GTGAAAATGACAACGCTAAATCGAA 59.151 36.000 0.00 0.00 0.00 3.71
317 318 6.358558 GTGAAAATGACAACGCTAAATCGAAA 59.641 34.615 0.00 0.00 0.00 3.46
318 319 6.577055 TGAAAATGACAACGCTAAATCGAAAG 59.423 34.615 0.00 0.00 0.00 2.62
319 320 5.607119 AATGACAACGCTAAATCGAAAGT 57.393 34.783 0.00 0.00 0.00 2.66
320 321 4.640805 TGACAACGCTAAATCGAAAGTC 57.359 40.909 0.00 0.00 0.00 3.01
321 322 3.430895 TGACAACGCTAAATCGAAAGTCC 59.569 43.478 0.00 0.00 32.15 3.85
322 323 3.660865 ACAACGCTAAATCGAAAGTCCT 58.339 40.909 0.00 0.00 0.00 3.85
323 324 4.062991 ACAACGCTAAATCGAAAGTCCTT 58.937 39.130 0.00 0.00 0.00 3.36
324 325 4.514066 ACAACGCTAAATCGAAAGTCCTTT 59.486 37.500 0.00 0.00 35.14 3.11
325 326 5.697633 ACAACGCTAAATCGAAAGTCCTTTA 59.302 36.000 0.00 0.00 32.11 1.85
326 327 6.370718 ACAACGCTAAATCGAAAGTCCTTTAT 59.629 34.615 0.00 0.00 32.11 1.40
327 328 6.980051 ACGCTAAATCGAAAGTCCTTTATT 57.020 33.333 0.00 0.00 32.11 1.40
328 329 7.373778 ACGCTAAATCGAAAGTCCTTTATTT 57.626 32.000 0.00 6.04 32.11 1.40
329 330 8.483307 ACGCTAAATCGAAAGTCCTTTATTTA 57.517 30.769 0.00 7.19 32.11 1.40
330 331 9.106070 ACGCTAAATCGAAAGTCCTTTATTTAT 57.894 29.630 0.00 0.00 29.73 1.40
353 354 9.772973 TTATATACAACACACACATATTCCTCC 57.227 33.333 0.00 0.00 0.00 4.30
354 355 3.686016 ACAACACACACATATTCCTCCC 58.314 45.455 0.00 0.00 0.00 4.30
355 356 3.330701 ACAACACACACATATTCCTCCCT 59.669 43.478 0.00 0.00 0.00 4.20
356 357 4.202567 ACAACACACACATATTCCTCCCTT 60.203 41.667 0.00 0.00 0.00 3.95
357 358 5.013704 ACAACACACACATATTCCTCCCTTA 59.986 40.000 0.00 0.00 0.00 2.69
358 359 5.099042 ACACACACATATTCCTCCCTTAC 57.901 43.478 0.00 0.00 0.00 2.34
359 360 4.119862 CACACACATATTCCTCCCTTACG 58.880 47.826 0.00 0.00 0.00 3.18
360 361 4.028131 ACACACATATTCCTCCCTTACGA 58.972 43.478 0.00 0.00 0.00 3.43
361 362 4.654262 ACACACATATTCCTCCCTTACGAT 59.346 41.667 0.00 0.00 0.00 3.73
362 363 5.836898 ACACACATATTCCTCCCTTACGATA 59.163 40.000 0.00 0.00 0.00 2.92
363 364 6.497259 ACACACATATTCCTCCCTTACGATAT 59.503 38.462 0.00 0.00 0.00 1.63
364 365 6.813649 CACACATATTCCTCCCTTACGATATG 59.186 42.308 0.00 0.00 34.98 1.78
365 366 6.724441 ACACATATTCCTCCCTTACGATATGA 59.276 38.462 7.83 0.00 33.73 2.15
366 367 7.036220 CACATATTCCTCCCTTACGATATGAC 58.964 42.308 7.83 0.00 33.73 3.06
367 368 6.724441 ACATATTCCTCCCTTACGATATGACA 59.276 38.462 7.83 0.00 33.73 3.58
368 369 7.234782 ACATATTCCTCCCTTACGATATGACAA 59.765 37.037 7.83 0.00 33.73 3.18
369 370 4.931661 TCCTCCCTTACGATATGACAAC 57.068 45.455 0.00 0.00 0.00 3.32
370 371 4.543689 TCCTCCCTTACGATATGACAACT 58.456 43.478 0.00 0.00 0.00 3.16
371 372 4.341235 TCCTCCCTTACGATATGACAACTG 59.659 45.833 0.00 0.00 0.00 3.16
372 373 4.099573 CCTCCCTTACGATATGACAACTGT 59.900 45.833 0.00 0.00 0.00 3.55
373 374 5.006153 TCCCTTACGATATGACAACTGTG 57.994 43.478 0.00 0.00 0.00 3.66
374 375 3.555956 CCCTTACGATATGACAACTGTGC 59.444 47.826 0.00 0.00 0.00 4.57
375 376 4.180817 CCTTACGATATGACAACTGTGCA 58.819 43.478 0.00 0.00 0.00 4.57
376 377 4.811024 CCTTACGATATGACAACTGTGCAT 59.189 41.667 0.00 0.00 0.00 3.96
377 378 5.294306 CCTTACGATATGACAACTGTGCATT 59.706 40.000 0.00 0.00 0.00 3.56
378 379 6.183360 CCTTACGATATGACAACTGTGCATTT 60.183 38.462 0.00 0.00 0.00 2.32
379 380 7.011016 CCTTACGATATGACAACTGTGCATTTA 59.989 37.037 0.00 0.00 0.00 1.40
380 381 6.925610 ACGATATGACAACTGTGCATTTAT 57.074 33.333 0.00 0.00 0.00 1.40
381 382 6.718388 ACGATATGACAACTGTGCATTTATG 58.282 36.000 0.00 0.00 0.00 1.90
382 383 6.316140 ACGATATGACAACTGTGCATTTATGT 59.684 34.615 0.00 0.00 0.00 2.29
383 384 7.494298 ACGATATGACAACTGTGCATTTATGTA 59.506 33.333 0.00 0.00 0.00 2.29
384 385 8.498358 CGATATGACAACTGTGCATTTATGTAT 58.502 33.333 0.00 0.00 0.00 2.29
389 390 9.830975 TGACAACTGTGCATTTATGTATATACT 57.169 29.630 13.89 2.84 0.00 2.12
391 392 9.830975 ACAACTGTGCATTTATGTATATACTGA 57.169 29.630 13.89 0.00 0.00 3.41
395 396 9.764870 CTGTGCATTTATGTATATACTGAATGC 57.235 33.333 29.63 29.63 41.29 3.56
396 397 8.729756 TGTGCATTTATGTATATACTGAATGCC 58.270 33.333 31.05 26.30 40.84 4.40
397 398 7.904977 GTGCATTTATGTATATACTGAATGCCG 59.095 37.037 31.05 15.36 40.84 5.69
398 399 7.606073 TGCATTTATGTATATACTGAATGCCGT 59.394 33.333 31.05 9.31 40.84 5.68
399 400 7.904977 GCATTTATGTATATACTGAATGCCGTG 59.095 37.037 28.11 14.34 38.67 4.94
400 401 7.899178 TTTATGTATATACTGAATGCCGTGG 57.101 36.000 13.89 0.00 0.00 4.94
401 402 5.738619 ATGTATATACTGAATGCCGTGGA 57.261 39.130 13.89 0.00 0.00 4.02
402 403 5.738619 TGTATATACTGAATGCCGTGGAT 57.261 39.130 13.89 0.00 0.00 3.41
403 404 6.844097 TGTATATACTGAATGCCGTGGATA 57.156 37.500 13.89 0.00 0.00 2.59
404 405 7.418337 TGTATATACTGAATGCCGTGGATAT 57.582 36.000 13.89 0.00 0.00 1.63
405 406 7.489160 TGTATATACTGAATGCCGTGGATATC 58.511 38.462 13.89 0.00 0.00 1.63
406 407 4.890158 ATACTGAATGCCGTGGATATCA 57.110 40.909 4.83 0.00 0.00 2.15
407 408 2.838736 ACTGAATGCCGTGGATATCAC 58.161 47.619 4.83 0.51 42.74 3.06
408 409 2.170397 ACTGAATGCCGTGGATATCACA 59.830 45.455 4.83 0.00 46.36 3.58
409 410 3.181451 ACTGAATGCCGTGGATATCACAT 60.181 43.478 4.83 0.00 46.36 3.21
410 411 4.040339 ACTGAATGCCGTGGATATCACATA 59.960 41.667 4.83 0.00 46.36 2.29
411 412 5.164620 TGAATGCCGTGGATATCACATAT 57.835 39.130 4.83 0.00 46.36 1.78
412 413 6.070824 ACTGAATGCCGTGGATATCACATATA 60.071 38.462 4.83 0.00 46.36 0.86
413 414 6.106003 TGAATGCCGTGGATATCACATATAC 58.894 40.000 4.83 0.00 46.36 1.47
414 415 4.465632 TGCCGTGGATATCACATATACC 57.534 45.455 4.83 0.00 46.36 2.73
415 416 3.835395 TGCCGTGGATATCACATATACCA 59.165 43.478 4.83 0.00 46.36 3.25
416 417 4.284746 TGCCGTGGATATCACATATACCAA 59.715 41.667 4.83 0.00 46.36 3.67
417 418 5.045942 TGCCGTGGATATCACATATACCAAT 60.046 40.000 4.83 0.00 46.36 3.16
418 419 5.294306 GCCGTGGATATCACATATACCAATG 59.706 44.000 4.83 0.00 46.36 2.82
419 420 6.406370 CCGTGGATATCACATATACCAATGT 58.594 40.000 4.83 0.00 46.36 2.71
420 421 7.552459 CCGTGGATATCACATATACCAATGTA 58.448 38.462 4.83 0.00 46.36 2.29
421 422 7.491372 CCGTGGATATCACATATACCAATGTAC 59.509 40.741 4.83 0.00 46.36 2.90
422 423 8.032451 CGTGGATATCACATATACCAATGTACA 58.968 37.037 4.83 0.00 46.36 2.90
423 424 9.890629 GTGGATATCACATATACCAATGTACAT 57.109 33.333 1.41 1.41 45.39 2.29
464 465 9.442047 AATATACAGCTATGGATTTGCTAAGAC 57.558 33.333 0.00 0.00 35.05 3.01
465 466 5.102953 ACAGCTATGGATTTGCTAAGACA 57.897 39.130 0.00 0.00 35.05 3.41
466 467 5.688807 ACAGCTATGGATTTGCTAAGACAT 58.311 37.500 0.00 5.67 35.05 3.06
467 468 6.125029 ACAGCTATGGATTTGCTAAGACATT 58.875 36.000 5.67 0.00 35.05 2.71
468 469 6.039047 ACAGCTATGGATTTGCTAAGACATTG 59.961 38.462 5.67 5.49 35.05 2.82
469 470 5.533903 AGCTATGGATTTGCTAAGACATTGG 59.466 40.000 5.67 2.62 35.05 3.16
470 471 5.300286 GCTATGGATTTGCTAAGACATTGGT 59.700 40.000 5.67 0.00 0.00 3.67
471 472 5.587388 ATGGATTTGCTAAGACATTGGTG 57.413 39.130 0.00 0.00 0.00 4.17
472 473 4.406456 TGGATTTGCTAAGACATTGGTGT 58.594 39.130 0.00 0.00 42.49 4.16
473 474 4.832266 TGGATTTGCTAAGACATTGGTGTT 59.168 37.500 0.00 0.00 39.09 3.32
474 475 5.304101 TGGATTTGCTAAGACATTGGTGTTT 59.696 36.000 0.00 0.00 39.09 2.83
475 476 6.183360 TGGATTTGCTAAGACATTGGTGTTTT 60.183 34.615 0.00 0.00 39.09 2.43
476 477 6.366061 GGATTTGCTAAGACATTGGTGTTTTC 59.634 38.462 0.00 0.00 39.09 2.29
477 478 4.846779 TGCTAAGACATTGGTGTTTTCC 57.153 40.909 0.00 0.00 39.09 3.13
478 479 4.211125 TGCTAAGACATTGGTGTTTTCCA 58.789 39.130 0.00 0.00 39.09 3.53
479 480 4.832266 TGCTAAGACATTGGTGTTTTCCAT 59.168 37.500 0.00 0.00 39.09 3.41
480 481 5.163513 GCTAAGACATTGGTGTTTTCCATG 58.836 41.667 0.00 0.00 39.09 3.66
481 482 3.665745 AGACATTGGTGTTTTCCATGC 57.334 42.857 0.00 0.00 39.09 4.06
482 483 2.964464 AGACATTGGTGTTTTCCATGCA 59.036 40.909 0.00 0.00 39.09 3.96
483 484 3.006110 AGACATTGGTGTTTTCCATGCAG 59.994 43.478 0.00 0.00 39.09 4.41
484 485 2.699846 ACATTGGTGTTTTCCATGCAGT 59.300 40.909 0.00 0.00 37.33 4.40
485 486 3.134442 ACATTGGTGTTTTCCATGCAGTT 59.866 39.130 0.00 0.00 37.33 3.16
486 487 4.343526 ACATTGGTGTTTTCCATGCAGTTA 59.656 37.500 0.00 0.00 37.33 2.24
487 488 4.314740 TTGGTGTTTTCCATGCAGTTAC 57.685 40.909 0.00 0.00 37.33 2.50
488 489 3.291584 TGGTGTTTTCCATGCAGTTACA 58.708 40.909 0.00 0.00 31.96 2.41
489 490 3.067461 TGGTGTTTTCCATGCAGTTACAC 59.933 43.478 0.00 0.80 35.04 2.90
490 491 3.067461 GGTGTTTTCCATGCAGTTACACA 59.933 43.478 14.79 2.69 36.91 3.72
491 492 4.261994 GGTGTTTTCCATGCAGTTACACAT 60.262 41.667 14.79 0.00 36.91 3.21
492 493 4.917415 GTGTTTTCCATGCAGTTACACATC 59.083 41.667 0.00 0.00 35.66 3.06
493 494 4.582240 TGTTTTCCATGCAGTTACACATCA 59.418 37.500 0.00 0.00 0.00 3.07
494 495 5.243507 TGTTTTCCATGCAGTTACACATCAT 59.756 36.000 0.00 0.00 0.00 2.45
495 496 5.981088 TTTCCATGCAGTTACACATCATT 57.019 34.783 0.00 0.00 0.00 2.57
496 497 5.565592 TTCCATGCAGTTACACATCATTC 57.434 39.130 0.00 0.00 0.00 2.67
497 498 4.587891 TCCATGCAGTTACACATCATTCA 58.412 39.130 0.00 0.00 0.00 2.57
498 499 4.637091 TCCATGCAGTTACACATCATTCAG 59.363 41.667 0.00 0.00 0.00 3.02
499 500 4.397103 CCATGCAGTTACACATCATTCAGT 59.603 41.667 0.00 0.00 0.00 3.41
500 501 5.106038 CCATGCAGTTACACATCATTCAGTT 60.106 40.000 0.00 0.00 0.00 3.16
501 502 6.093909 CCATGCAGTTACACATCATTCAGTTA 59.906 38.462 0.00 0.00 0.00 2.24
502 503 6.480524 TGCAGTTACACATCATTCAGTTAC 57.519 37.500 0.00 0.00 0.00 2.50
503 504 6.230472 TGCAGTTACACATCATTCAGTTACT 58.770 36.000 0.00 0.00 0.00 2.24
504 505 6.368791 TGCAGTTACACATCATTCAGTTACTC 59.631 38.462 0.00 0.00 0.00 2.59
505 506 6.183360 GCAGTTACACATCATTCAGTTACTCC 60.183 42.308 0.00 0.00 0.00 3.85
506 507 7.099764 CAGTTACACATCATTCAGTTACTCCT 58.900 38.462 0.00 0.00 0.00 3.69
507 508 7.604164 CAGTTACACATCATTCAGTTACTCCTT 59.396 37.037 0.00 0.00 0.00 3.36
508 509 7.819900 AGTTACACATCATTCAGTTACTCCTTC 59.180 37.037 0.00 0.00 0.00 3.46
509 510 5.171476 ACACATCATTCAGTTACTCCTTCG 58.829 41.667 0.00 0.00 0.00 3.79
510 511 5.047306 ACACATCATTCAGTTACTCCTTCGA 60.047 40.000 0.00 0.00 0.00 3.71
511 512 5.518128 CACATCATTCAGTTACTCCTTCGAG 59.482 44.000 0.00 0.00 42.32 4.04
512 513 4.111375 TCATTCAGTTACTCCTTCGAGC 57.889 45.455 0.00 0.00 40.03 5.03
513 514 3.764434 TCATTCAGTTACTCCTTCGAGCT 59.236 43.478 0.00 0.00 40.03 4.09
514 515 3.851976 TTCAGTTACTCCTTCGAGCTC 57.148 47.619 2.73 2.73 40.03 4.09
515 516 2.093106 TCAGTTACTCCTTCGAGCTCC 58.907 52.381 8.47 0.00 40.03 4.70
516 517 2.096248 CAGTTACTCCTTCGAGCTCCT 58.904 52.381 8.47 0.00 40.03 3.69
517 518 3.054582 TCAGTTACTCCTTCGAGCTCCTA 60.055 47.826 8.47 0.00 40.03 2.94
518 519 3.886505 CAGTTACTCCTTCGAGCTCCTAT 59.113 47.826 8.47 0.00 40.03 2.57
519 520 3.886505 AGTTACTCCTTCGAGCTCCTATG 59.113 47.826 8.47 0.00 40.03 2.23
520 521 1.698506 ACTCCTTCGAGCTCCTATGG 58.301 55.000 8.47 8.55 40.03 2.74
521 522 1.215673 ACTCCTTCGAGCTCCTATGGA 59.784 52.381 8.47 12.22 40.03 3.41
522 523 2.311463 CTCCTTCGAGCTCCTATGGAA 58.689 52.381 8.47 4.50 0.00 3.53
523 524 2.295909 CTCCTTCGAGCTCCTATGGAAG 59.704 54.545 16.87 16.87 35.14 3.46
524 525 2.091830 TCCTTCGAGCTCCTATGGAAGA 60.092 50.000 22.47 10.89 36.99 2.87
525 526 2.035321 CCTTCGAGCTCCTATGGAAGAC 59.965 54.545 22.47 0.00 36.99 3.01
569 570 6.069331 CCATCCATCTCAATCCAAAATCTCT 58.931 40.000 0.00 0.00 0.00 3.10
675 676 5.105146 AGCAAGTTCCTATCGAGAACAAGAT 60.105 40.000 15.79 5.96 44.91 2.40
743 744 5.339990 GTGAAAAAGTGTTGCTTAGCTCAA 58.660 37.500 5.60 0.00 36.17 3.02
783 784 5.725362 AGAGAAAGTGTAGTGTGATAAGGC 58.275 41.667 0.00 0.00 0.00 4.35
890 892 2.210644 TCCCCTTTTTACCCATCGGAT 58.789 47.619 0.00 0.00 0.00 4.18
914 917 6.471233 TCGACTCACATTTTGATCTCCTAT 57.529 37.500 0.00 0.00 32.17 2.57
991 994 4.880537 CCGAGCCGAGCGAGCATT 62.881 66.667 0.00 0.00 0.00 3.56
1020 1023 5.961395 ATATGTTGATTGTACCGAACGAC 57.039 39.130 0.00 0.00 0.00 4.34
1050 1053 3.689161 CCTTATCACGAAAGCCACATTCA 59.311 43.478 0.00 0.00 0.00 2.57
1183 1189 3.168292 TCTCATCCTGCAGAAGACTCAA 58.832 45.455 17.39 0.00 0.00 3.02
1225 1231 1.739667 CTGGCCGTCGGATGTGATA 59.260 57.895 17.49 0.00 0.00 2.15
1231 1237 3.187700 GCCGTCGGATGTGATATATTCC 58.812 50.000 17.49 0.00 0.00 3.01
1243 1249 5.069781 TGTGATATATTCCCGTGTCACATCA 59.930 40.000 3.42 0.00 40.47 3.07
1369 1375 0.755686 TGAAAGGGTTGCCGCAAAAT 59.244 45.000 7.54 0.00 0.00 1.82
1400 1406 1.989430 GAGCGGTCTCTGAAAGTGAG 58.011 55.000 7.51 0.00 37.10 3.51
1406 1412 3.119779 CGGTCTCTGAAAGTGAGTAGGAC 60.120 52.174 0.00 0.00 37.10 3.85
1408 1414 3.082548 TCTCTGAAAGTGAGTAGGACCG 58.917 50.000 0.00 0.00 31.94 4.79
1470 1476 2.029365 GGTCTTCTCGCGCAAATAAGAC 59.971 50.000 23.24 23.24 43.32 3.01
1566 1572 5.010719 TCACAAGACAGAGAAAGATTACCGT 59.989 40.000 0.00 0.00 0.00 4.83
1691 1697 1.347707 AGATCAGGGTTGAACGAAGCA 59.652 47.619 0.00 0.00 36.78 3.91
1748 1755 6.387465 CGATTAGAAACCAGTGACTCTACAA 58.613 40.000 0.00 0.00 0.00 2.41
1827 1834 3.334691 TCTGTAGCCAGTTTCAATTCCG 58.665 45.455 0.00 0.00 39.82 4.30
1943 1950 1.066573 CAGGTCAGAGCTTGTGGTAGG 60.067 57.143 0.00 0.00 0.00 3.18
1982 1989 3.181471 CGCAGATCCACTCAACTAGGAAT 60.181 47.826 0.00 0.00 34.62 3.01
2022 2029 3.585862 TGACTGTTTGAACGATCCTAGC 58.414 45.455 0.00 0.00 0.00 3.42
2095 2102 0.397564 CCCCCAAAAGCAAAGCACAT 59.602 50.000 0.00 0.00 0.00 3.21
2316 2323 3.139077 GGGCCCGTATAGAAAGTCAATG 58.861 50.000 5.69 0.00 0.00 2.82
2317 2324 2.548480 GGCCCGTATAGAAAGTCAATGC 59.452 50.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.282569 GCTCATAAAGAGGATGAAACTGATAAT 57.717 33.333 0.00 0.00 44.86 1.28
24 25 7.716998 GGCTCATAAAGAGGATGAAACTGATAA 59.283 37.037 0.00 0.00 44.86 1.75
25 26 7.071698 AGGCTCATAAAGAGGATGAAACTGATA 59.928 37.037 0.00 0.00 44.86 2.15
26 27 6.060788 GGCTCATAAAGAGGATGAAACTGAT 58.939 40.000 0.00 0.00 44.86 2.90
27 28 5.190528 AGGCTCATAAAGAGGATGAAACTGA 59.809 40.000 0.00 0.00 44.86 3.41
28 29 5.296283 CAGGCTCATAAAGAGGATGAAACTG 59.704 44.000 0.00 0.00 44.86 3.16
29 30 5.190528 TCAGGCTCATAAAGAGGATGAAACT 59.809 40.000 0.00 0.00 44.86 2.66
30 31 5.431765 TCAGGCTCATAAAGAGGATGAAAC 58.568 41.667 0.00 0.00 44.86 2.78
31 32 5.426509 TCTCAGGCTCATAAAGAGGATGAAA 59.573 40.000 0.00 0.00 44.86 2.69
32 33 4.964897 TCTCAGGCTCATAAAGAGGATGAA 59.035 41.667 0.00 0.00 44.86 2.57
33 34 4.550669 TCTCAGGCTCATAAAGAGGATGA 58.449 43.478 0.00 0.00 44.86 2.92
34 35 4.952071 TCTCAGGCTCATAAAGAGGATG 57.048 45.455 0.00 0.00 44.86 3.51
35 36 5.153675 TGATCTCAGGCTCATAAAGAGGAT 58.846 41.667 0.00 0.00 44.86 3.24
36 37 4.550669 TGATCTCAGGCTCATAAAGAGGA 58.449 43.478 0.00 0.00 44.86 3.71
37 38 4.952071 TGATCTCAGGCTCATAAAGAGG 57.048 45.455 0.00 0.00 44.86 3.69
39 40 6.070366 CCCATATGATCTCAGGCTCATAAAGA 60.070 42.308 3.65 0.00 37.76 2.52
40 41 6.070366 TCCCATATGATCTCAGGCTCATAAAG 60.070 42.308 3.65 0.70 37.76 1.85
41 42 5.786975 TCCCATATGATCTCAGGCTCATAAA 59.213 40.000 3.65 0.00 37.76 1.40
42 43 5.344566 TCCCATATGATCTCAGGCTCATAA 58.655 41.667 3.65 0.00 37.76 1.90
43 44 4.951603 TCCCATATGATCTCAGGCTCATA 58.048 43.478 3.65 1.69 38.39 2.15
44 45 3.799719 TCCCATATGATCTCAGGCTCAT 58.200 45.455 3.65 0.00 36.19 2.90
45 46 3.264922 TCCCATATGATCTCAGGCTCA 57.735 47.619 3.65 0.00 0.00 4.26
46 47 4.630644 TTTCCCATATGATCTCAGGCTC 57.369 45.455 3.65 0.00 0.00 4.70
47 48 4.166725 TGTTTTCCCATATGATCTCAGGCT 59.833 41.667 3.65 0.00 0.00 4.58
48 49 4.464008 TGTTTTCCCATATGATCTCAGGC 58.536 43.478 3.65 0.00 0.00 4.85
49 50 7.592885 AATTGTTTTCCCATATGATCTCAGG 57.407 36.000 3.65 0.00 0.00 3.86
51 52 9.865152 TGATAATTGTTTTCCCATATGATCTCA 57.135 29.630 3.65 0.00 0.00 3.27
90 91 8.802267 GCTCACTTCCTTGAGAGTATATAATCT 58.198 37.037 12.34 12.34 45.19 2.40
91 92 8.032451 GGCTCACTTCCTTGAGAGTATATAATC 58.968 40.741 1.88 1.88 45.19 1.75
92 93 7.510685 TGGCTCACTTCCTTGAGAGTATATAAT 59.489 37.037 4.29 0.00 45.19 1.28
93 94 6.839134 TGGCTCACTTCCTTGAGAGTATATAA 59.161 38.462 4.29 0.00 45.19 0.98
94 95 6.265649 GTGGCTCACTTCCTTGAGAGTATATA 59.734 42.308 4.29 0.00 45.19 0.86
95 96 5.069781 GTGGCTCACTTCCTTGAGAGTATAT 59.930 44.000 4.29 0.00 45.19 0.86
96 97 4.402793 GTGGCTCACTTCCTTGAGAGTATA 59.597 45.833 4.29 0.00 45.19 1.47
97 98 3.196685 GTGGCTCACTTCCTTGAGAGTAT 59.803 47.826 4.29 0.00 45.19 2.12
98 99 2.563179 GTGGCTCACTTCCTTGAGAGTA 59.437 50.000 4.29 0.00 45.19 2.59
99 100 1.346068 GTGGCTCACTTCCTTGAGAGT 59.654 52.381 4.29 0.00 45.19 3.24
100 101 1.622811 AGTGGCTCACTTCCTTGAGAG 59.377 52.381 4.29 0.00 42.59 3.20
101 102 1.620819 GAGTGGCTCACTTCCTTGAGA 59.379 52.381 8.90 0.00 45.44 3.27
102 103 1.345741 TGAGTGGCTCACTTCCTTGAG 59.654 52.381 8.90 0.00 45.44 3.02
103 104 1.423584 TGAGTGGCTCACTTCCTTGA 58.576 50.000 8.90 0.00 45.44 3.02
104 105 1.876156 GTTGAGTGGCTCACTTCCTTG 59.124 52.381 8.90 0.00 45.44 3.61
105 106 1.202818 GGTTGAGTGGCTCACTTCCTT 60.203 52.381 8.90 0.00 45.44 3.36
106 107 0.398318 GGTTGAGTGGCTCACTTCCT 59.602 55.000 8.90 0.00 45.44 3.36
107 108 0.398318 AGGTTGAGTGGCTCACTTCC 59.602 55.000 8.90 11.05 45.44 3.46
108 109 1.070758 TGAGGTTGAGTGGCTCACTTC 59.929 52.381 8.90 3.95 45.44 3.01
109 110 1.071385 CTGAGGTTGAGTGGCTCACTT 59.929 52.381 8.90 0.00 45.44 3.16
111 112 0.952984 GCTGAGGTTGAGTGGCTCAC 60.953 60.000 0.00 0.00 40.46 3.51
112 113 1.372683 GCTGAGGTTGAGTGGCTCA 59.627 57.895 0.00 0.00 38.87 4.26
113 114 1.376553 GGCTGAGGTTGAGTGGCTC 60.377 63.158 0.00 0.00 0.00 4.70
114 115 0.545309 TAGGCTGAGGTTGAGTGGCT 60.545 55.000 0.00 0.00 37.33 4.75
115 116 0.107945 CTAGGCTGAGGTTGAGTGGC 60.108 60.000 0.00 0.00 0.00 5.01
116 117 0.107945 GCTAGGCTGAGGTTGAGTGG 60.108 60.000 0.00 0.00 0.00 4.00
117 118 0.459237 CGCTAGGCTGAGGTTGAGTG 60.459 60.000 0.00 0.00 0.00 3.51
118 119 1.608717 CCGCTAGGCTGAGGTTGAGT 61.609 60.000 0.00 0.00 0.00 3.41
119 120 1.142748 CCGCTAGGCTGAGGTTGAG 59.857 63.158 0.00 0.00 0.00 3.02
120 121 0.687757 ATCCGCTAGGCTGAGGTTGA 60.688 55.000 0.00 0.00 37.47 3.18
121 122 0.179000 AATCCGCTAGGCTGAGGTTG 59.821 55.000 0.00 0.00 37.47 3.77
122 123 0.466124 GAATCCGCTAGGCTGAGGTT 59.534 55.000 0.00 0.00 37.47 3.50
123 124 0.397816 AGAATCCGCTAGGCTGAGGT 60.398 55.000 0.00 0.00 37.47 3.85
124 125 0.316841 GAGAATCCGCTAGGCTGAGG 59.683 60.000 0.00 0.00 37.47 3.86
125 126 3.883997 GAGAATCCGCTAGGCTGAG 57.116 57.895 0.00 0.00 37.47 3.35
137 138 1.138464 GTCCAGGTTACGGGGAGAATC 59.862 57.143 0.00 0.00 32.25 2.52
138 139 1.201424 GTCCAGGTTACGGGGAGAAT 58.799 55.000 0.00 0.00 32.25 2.40
139 140 0.906282 GGTCCAGGTTACGGGGAGAA 60.906 60.000 0.00 0.00 32.25 2.87
140 141 1.305549 GGTCCAGGTTACGGGGAGA 60.306 63.158 0.00 0.00 32.25 3.71
141 142 1.305887 AGGTCCAGGTTACGGGGAG 60.306 63.158 0.00 0.00 32.25 4.30
142 143 1.611261 CAGGTCCAGGTTACGGGGA 60.611 63.158 0.00 0.00 32.25 4.81
143 144 2.987125 CAGGTCCAGGTTACGGGG 59.013 66.667 0.00 0.00 32.25 5.73
144 145 2.267961 GCAGGTCCAGGTTACGGG 59.732 66.667 0.00 0.00 0.00 5.28
145 146 2.240162 GAGGCAGGTCCAGGTTACGG 62.240 65.000 0.00 0.00 37.29 4.02
146 147 1.218316 GAGGCAGGTCCAGGTTACG 59.782 63.158 0.00 0.00 37.29 3.18
147 148 0.537653 GAGAGGCAGGTCCAGGTTAC 59.462 60.000 0.00 0.00 37.29 2.50
148 149 0.617820 GGAGAGGCAGGTCCAGGTTA 60.618 60.000 0.00 0.00 37.29 2.85
149 150 1.920835 GGAGAGGCAGGTCCAGGTT 60.921 63.158 0.00 0.00 37.29 3.50
150 151 2.284995 GGAGAGGCAGGTCCAGGT 60.285 66.667 0.00 0.00 37.29 4.00
151 152 3.086600 GGGAGAGGCAGGTCCAGG 61.087 72.222 0.00 0.00 37.29 4.45
152 153 3.465403 CGGGAGAGGCAGGTCCAG 61.465 72.222 0.00 0.00 37.29 3.86
159 160 2.050836 TTTTGACTGCGGGAGAGGCA 62.051 55.000 2.65 0.00 38.92 4.75
160 161 1.302511 TTTTGACTGCGGGAGAGGC 60.303 57.895 2.65 0.00 0.00 4.70
161 162 0.035458 AGTTTTGACTGCGGGAGAGG 59.965 55.000 2.65 0.00 0.00 3.69
162 163 1.001406 AGAGTTTTGACTGCGGGAGAG 59.999 52.381 2.65 0.00 0.00 3.20
163 164 1.000955 GAGAGTTTTGACTGCGGGAGA 59.999 52.381 2.65 0.00 0.00 3.71
164 165 1.433534 GAGAGTTTTGACTGCGGGAG 58.566 55.000 0.00 0.00 0.00 4.30
165 166 0.034896 GGAGAGTTTTGACTGCGGGA 59.965 55.000 0.00 0.00 0.00 5.14
166 167 0.035458 AGGAGAGTTTTGACTGCGGG 59.965 55.000 0.00 0.00 0.00 6.13
167 168 1.001406 AGAGGAGAGTTTTGACTGCGG 59.999 52.381 0.00 0.00 0.00 5.69
168 169 2.447244 AGAGGAGAGTTTTGACTGCG 57.553 50.000 0.00 0.00 0.00 5.18
169 170 4.241681 CTGTAGAGGAGAGTTTTGACTGC 58.758 47.826 0.00 0.00 0.00 4.40
170 171 4.241681 GCTGTAGAGGAGAGTTTTGACTG 58.758 47.826 0.00 0.00 0.00 3.51
171 172 3.259625 GGCTGTAGAGGAGAGTTTTGACT 59.740 47.826 0.00 0.00 0.00 3.41
172 173 3.591023 GGCTGTAGAGGAGAGTTTTGAC 58.409 50.000 0.00 0.00 0.00 3.18
173 174 2.567615 GGGCTGTAGAGGAGAGTTTTGA 59.432 50.000 0.00 0.00 0.00 2.69
174 175 2.355209 GGGGCTGTAGAGGAGAGTTTTG 60.355 54.545 0.00 0.00 0.00 2.44
175 176 1.909986 GGGGCTGTAGAGGAGAGTTTT 59.090 52.381 0.00 0.00 0.00 2.43
176 177 1.079658 AGGGGCTGTAGAGGAGAGTTT 59.920 52.381 0.00 0.00 0.00 2.66
177 178 0.713579 AGGGGCTGTAGAGGAGAGTT 59.286 55.000 0.00 0.00 0.00 3.01
178 179 0.260523 GAGGGGCTGTAGAGGAGAGT 59.739 60.000 0.00 0.00 0.00 3.24
179 180 0.555769 AGAGGGGCTGTAGAGGAGAG 59.444 60.000 0.00 0.00 0.00 3.20
180 181 0.260230 CAGAGGGGCTGTAGAGGAGA 59.740 60.000 0.00 0.00 39.85 3.71
181 182 0.758685 CCAGAGGGGCTGTAGAGGAG 60.759 65.000 0.00 0.00 43.33 3.69
182 183 1.311403 CCAGAGGGGCTGTAGAGGA 59.689 63.158 0.00 0.00 43.33 3.71
183 184 3.962557 CCAGAGGGGCTGTAGAGG 58.037 66.667 0.00 0.00 43.33 3.69
205 206 1.893919 AAGGAGACGAGGCTTCTGGC 61.894 60.000 0.00 0.00 40.90 4.85
206 207 0.610687 AAAGGAGACGAGGCTTCTGG 59.389 55.000 0.00 0.00 0.00 3.86
207 208 3.056465 AGTTAAAGGAGACGAGGCTTCTG 60.056 47.826 0.00 0.00 0.00 3.02
208 209 3.056465 CAGTTAAAGGAGACGAGGCTTCT 60.056 47.826 0.00 0.00 0.00 2.85
209 210 3.056749 TCAGTTAAAGGAGACGAGGCTTC 60.057 47.826 0.00 0.00 0.00 3.86
210 211 2.897969 TCAGTTAAAGGAGACGAGGCTT 59.102 45.455 0.00 0.00 0.00 4.35
211 212 2.526432 TCAGTTAAAGGAGACGAGGCT 58.474 47.619 0.00 0.00 0.00 4.58
212 213 3.528597 ATCAGTTAAAGGAGACGAGGC 57.471 47.619 0.00 0.00 0.00 4.70
213 214 5.073311 TGAATCAGTTAAAGGAGACGAGG 57.927 43.478 0.00 0.00 0.00 4.63
214 215 6.090088 CACTTGAATCAGTTAAAGGAGACGAG 59.910 42.308 0.00 0.00 31.06 4.18
215 216 5.926542 CACTTGAATCAGTTAAAGGAGACGA 59.073 40.000 0.00 0.00 31.06 4.20
216 217 5.926542 TCACTTGAATCAGTTAAAGGAGACG 59.073 40.000 0.00 0.00 31.06 4.18
217 218 7.913674 ATCACTTGAATCAGTTAAAGGAGAC 57.086 36.000 0.00 0.00 31.06 3.36
218 219 8.156820 TGAATCACTTGAATCAGTTAAAGGAGA 58.843 33.333 0.00 0.00 31.06 3.71
219 220 8.327941 TGAATCACTTGAATCAGTTAAAGGAG 57.672 34.615 0.00 0.00 31.06 3.69
220 221 8.327941 CTGAATCACTTGAATCAGTTAAAGGA 57.672 34.615 13.95 0.00 43.56 3.36
269 270 9.667107 TCACGAGTTTCTAGATAATCCAATTTT 57.333 29.630 5.27 0.00 0.00 1.82
270 271 9.667107 TTCACGAGTTTCTAGATAATCCAATTT 57.333 29.630 5.27 0.00 0.00 1.82
271 272 9.667107 TTTCACGAGTTTCTAGATAATCCAATT 57.333 29.630 5.27 0.00 0.00 2.32
272 273 9.667107 TTTTCACGAGTTTCTAGATAATCCAAT 57.333 29.630 5.27 0.00 0.00 3.16
273 274 9.667107 ATTTTCACGAGTTTCTAGATAATCCAA 57.333 29.630 5.27 0.00 0.00 3.53
274 275 9.098355 CATTTTCACGAGTTTCTAGATAATCCA 57.902 33.333 5.27 0.00 0.00 3.41
275 276 9.314321 TCATTTTCACGAGTTTCTAGATAATCC 57.686 33.333 5.27 0.00 0.00 3.01
277 278 9.653287 TGTCATTTTCACGAGTTTCTAGATAAT 57.347 29.630 0.00 0.00 0.00 1.28
278 279 9.483916 TTGTCATTTTCACGAGTTTCTAGATAA 57.516 29.630 0.00 0.00 0.00 1.75
279 280 8.922676 GTTGTCATTTTCACGAGTTTCTAGATA 58.077 33.333 0.00 0.00 0.00 1.98
280 281 7.359264 CGTTGTCATTTTCACGAGTTTCTAGAT 60.359 37.037 0.00 0.00 0.00 1.98
281 282 6.074516 CGTTGTCATTTTCACGAGTTTCTAGA 60.075 38.462 0.00 0.00 0.00 2.43
282 283 6.065153 CGTTGTCATTTTCACGAGTTTCTAG 58.935 40.000 0.00 0.00 0.00 2.43
283 284 5.557514 GCGTTGTCATTTTCACGAGTTTCTA 60.558 40.000 0.00 0.00 0.00 2.10
284 285 4.785341 GCGTTGTCATTTTCACGAGTTTCT 60.785 41.667 0.00 0.00 0.00 2.52
285 286 3.417645 GCGTTGTCATTTTCACGAGTTTC 59.582 43.478 0.00 0.00 0.00 2.78
286 287 3.064820 AGCGTTGTCATTTTCACGAGTTT 59.935 39.130 0.00 0.00 0.00 2.66
287 288 2.612212 AGCGTTGTCATTTTCACGAGTT 59.388 40.909 0.00 0.00 0.00 3.01
288 289 2.210116 AGCGTTGTCATTTTCACGAGT 58.790 42.857 0.00 0.00 0.00 4.18
289 290 2.949714 AGCGTTGTCATTTTCACGAG 57.050 45.000 0.00 0.00 0.00 4.18
290 291 4.797693 TTTAGCGTTGTCATTTTCACGA 57.202 36.364 0.00 0.00 0.00 4.35
291 292 4.257447 CGATTTAGCGTTGTCATTTTCACG 59.743 41.667 0.00 0.00 0.00 4.35
292 293 5.379003 TCGATTTAGCGTTGTCATTTTCAC 58.621 37.500 0.00 0.00 0.00 3.18
293 294 5.599359 TCGATTTAGCGTTGTCATTTTCA 57.401 34.783 0.00 0.00 0.00 2.69
294 295 6.577427 ACTTTCGATTTAGCGTTGTCATTTTC 59.423 34.615 0.00 0.00 0.00 2.29
295 296 6.435428 ACTTTCGATTTAGCGTTGTCATTTT 58.565 32.000 0.00 0.00 0.00 1.82
296 297 5.997385 ACTTTCGATTTAGCGTTGTCATTT 58.003 33.333 0.00 0.00 0.00 2.32
297 298 5.390567 GGACTTTCGATTTAGCGTTGTCATT 60.391 40.000 0.00 0.00 32.46 2.57
298 299 4.092968 GGACTTTCGATTTAGCGTTGTCAT 59.907 41.667 0.00 0.00 32.46 3.06
299 300 3.430895 GGACTTTCGATTTAGCGTTGTCA 59.569 43.478 0.00 0.00 32.46 3.58
300 301 3.678548 AGGACTTTCGATTTAGCGTTGTC 59.321 43.478 0.00 0.00 0.00 3.18
301 302 3.660865 AGGACTTTCGATTTAGCGTTGT 58.339 40.909 0.00 0.00 0.00 3.32
302 303 4.663636 AAGGACTTTCGATTTAGCGTTG 57.336 40.909 0.00 0.00 0.00 4.10
303 304 6.980051 ATAAAGGACTTTCGATTTAGCGTT 57.020 33.333 0.00 0.00 34.23 4.84
304 305 6.980051 AATAAAGGACTTTCGATTTAGCGT 57.020 33.333 0.00 0.00 34.23 5.07
327 328 9.772973 GGAGGAATATGTGTGTGTTGTATATAA 57.227 33.333 0.00 0.00 0.00 0.98
328 329 8.372459 GGGAGGAATATGTGTGTGTTGTATATA 58.628 37.037 0.00 0.00 0.00 0.86
329 330 7.072454 AGGGAGGAATATGTGTGTGTTGTATAT 59.928 37.037 0.00 0.00 0.00 0.86
330 331 6.385759 AGGGAGGAATATGTGTGTGTTGTATA 59.614 38.462 0.00 0.00 0.00 1.47
331 332 5.191722 AGGGAGGAATATGTGTGTGTTGTAT 59.808 40.000 0.00 0.00 0.00 2.29
332 333 4.534500 AGGGAGGAATATGTGTGTGTTGTA 59.466 41.667 0.00 0.00 0.00 2.41
333 334 3.330701 AGGGAGGAATATGTGTGTGTTGT 59.669 43.478 0.00 0.00 0.00 3.32
334 335 3.955471 AGGGAGGAATATGTGTGTGTTG 58.045 45.455 0.00 0.00 0.00 3.33
335 336 4.657814 AAGGGAGGAATATGTGTGTGTT 57.342 40.909 0.00 0.00 0.00 3.32
336 337 4.382685 CGTAAGGGAGGAATATGTGTGTGT 60.383 45.833 0.00 0.00 0.00 3.72
337 338 4.119862 CGTAAGGGAGGAATATGTGTGTG 58.880 47.826 0.00 0.00 0.00 3.82
338 339 4.028131 TCGTAAGGGAGGAATATGTGTGT 58.972 43.478 0.00 0.00 38.47 3.72
339 340 4.665833 TCGTAAGGGAGGAATATGTGTG 57.334 45.455 0.00 0.00 38.47 3.82
340 341 6.724441 TCATATCGTAAGGGAGGAATATGTGT 59.276 38.462 0.00 0.00 38.47 3.72
341 342 7.036220 GTCATATCGTAAGGGAGGAATATGTG 58.964 42.308 0.00 0.00 38.47 3.21
342 343 6.724441 TGTCATATCGTAAGGGAGGAATATGT 59.276 38.462 0.00 0.00 38.47 2.29
343 344 7.170393 TGTCATATCGTAAGGGAGGAATATG 57.830 40.000 0.00 0.00 38.47 1.78
344 345 7.455008 AGTTGTCATATCGTAAGGGAGGAATAT 59.545 37.037 0.00 0.00 38.47 1.28
345 346 6.781014 AGTTGTCATATCGTAAGGGAGGAATA 59.219 38.462 0.00 0.00 38.47 1.75
346 347 5.602978 AGTTGTCATATCGTAAGGGAGGAAT 59.397 40.000 0.00 0.00 38.47 3.01
347 348 4.960469 AGTTGTCATATCGTAAGGGAGGAA 59.040 41.667 0.00 0.00 38.47 3.36
348 349 4.341235 CAGTTGTCATATCGTAAGGGAGGA 59.659 45.833 0.00 0.00 38.47 3.71
349 350 4.099573 ACAGTTGTCATATCGTAAGGGAGG 59.900 45.833 0.00 0.00 38.47 4.30
350 351 5.043903 CACAGTTGTCATATCGTAAGGGAG 58.956 45.833 0.00 0.00 38.47 4.30
351 352 4.679639 GCACAGTTGTCATATCGTAAGGGA 60.680 45.833 0.00 0.00 38.47 4.20
352 353 3.555956 GCACAGTTGTCATATCGTAAGGG 59.444 47.826 0.00 0.00 38.47 3.95
353 354 4.180817 TGCACAGTTGTCATATCGTAAGG 58.819 43.478 0.00 0.00 38.47 2.69
354 355 5.973651 ATGCACAGTTGTCATATCGTAAG 57.026 39.130 0.00 0.00 0.00 2.34
355 356 6.735678 AAATGCACAGTTGTCATATCGTAA 57.264 33.333 0.00 0.00 0.00 3.18
356 357 7.494298 ACATAAATGCACAGTTGTCATATCGTA 59.506 33.333 0.00 0.00 0.00 3.43
357 358 6.316140 ACATAAATGCACAGTTGTCATATCGT 59.684 34.615 0.00 0.00 0.00 3.73
358 359 6.718388 ACATAAATGCACAGTTGTCATATCG 58.282 36.000 0.00 0.00 0.00 2.92
363 364 9.830975 AGTATATACATAAATGCACAGTTGTCA 57.169 29.630 15.18 0.00 0.00 3.58
365 366 9.830975 TCAGTATATACATAAATGCACAGTTGT 57.169 29.630 15.18 0.00 0.00 3.32
369 370 9.764870 GCATTCAGTATATACATAAATGCACAG 57.235 33.333 30.49 13.88 0.00 3.66
370 371 8.729756 GGCATTCAGTATATACATAAATGCACA 58.270 33.333 32.85 11.52 32.43 4.57
371 372 7.904977 CGGCATTCAGTATATACATAAATGCAC 59.095 37.037 32.85 26.49 32.43 4.57
372 373 7.606073 ACGGCATTCAGTATATACATAAATGCA 59.394 33.333 32.85 13.88 32.43 3.96
373 374 7.904977 CACGGCATTCAGTATATACATAAATGC 59.095 37.037 29.21 29.21 0.00 3.56
374 375 8.390354 CCACGGCATTCAGTATATACATAAATG 58.610 37.037 15.18 18.18 0.00 2.32
375 376 8.318412 TCCACGGCATTCAGTATATACATAAAT 58.682 33.333 15.18 8.23 0.00 1.40
376 377 7.672240 TCCACGGCATTCAGTATATACATAAA 58.328 34.615 15.18 6.39 0.00 1.40
377 378 7.234661 TCCACGGCATTCAGTATATACATAA 57.765 36.000 15.18 8.67 0.00 1.90
378 379 6.844097 TCCACGGCATTCAGTATATACATA 57.156 37.500 15.18 0.00 0.00 2.29
379 380 5.738619 TCCACGGCATTCAGTATATACAT 57.261 39.130 15.18 0.00 0.00 2.29
380 381 5.738619 ATCCACGGCATTCAGTATATACA 57.261 39.130 15.18 0.00 0.00 2.29
381 382 7.435488 GTGATATCCACGGCATTCAGTATATAC 59.565 40.741 4.60 4.60 35.86 1.47
382 383 7.489160 GTGATATCCACGGCATTCAGTATATA 58.511 38.462 0.00 0.00 35.86 0.86
383 384 6.341316 GTGATATCCACGGCATTCAGTATAT 58.659 40.000 0.00 0.00 35.86 0.86
384 385 5.720202 GTGATATCCACGGCATTCAGTATA 58.280 41.667 0.00 0.00 35.86 1.47
385 386 4.569943 GTGATATCCACGGCATTCAGTAT 58.430 43.478 0.00 0.00 35.86 2.12
386 387 3.990092 GTGATATCCACGGCATTCAGTA 58.010 45.455 0.00 0.00 35.86 2.74
387 388 2.838736 GTGATATCCACGGCATTCAGT 58.161 47.619 0.00 0.00 35.86 3.41
397 398 9.890629 ATGTACATTGGTATATGTGATATCCAC 57.109 33.333 1.41 0.00 45.88 4.02
438 439 9.442047 GTCTTAGCAAATCCATAGCTGTATATT 57.558 33.333 0.00 0.00 39.30 1.28
439 440 8.597167 TGTCTTAGCAAATCCATAGCTGTATAT 58.403 33.333 0.00 0.00 39.30 0.86
440 441 7.962441 TGTCTTAGCAAATCCATAGCTGTATA 58.038 34.615 0.00 0.00 39.30 1.47
441 442 6.830912 TGTCTTAGCAAATCCATAGCTGTAT 58.169 36.000 0.00 0.00 39.30 2.29
442 443 6.233905 TGTCTTAGCAAATCCATAGCTGTA 57.766 37.500 0.00 0.00 39.30 2.74
443 444 5.102953 TGTCTTAGCAAATCCATAGCTGT 57.897 39.130 0.00 0.00 39.30 4.40
444 445 6.436261 CAATGTCTTAGCAAATCCATAGCTG 58.564 40.000 0.00 0.00 39.30 4.24
445 446 5.533903 CCAATGTCTTAGCAAATCCATAGCT 59.466 40.000 0.00 0.00 42.14 3.32
446 447 5.300286 ACCAATGTCTTAGCAAATCCATAGC 59.700 40.000 0.00 0.00 0.00 2.97
447 448 6.319658 ACACCAATGTCTTAGCAAATCCATAG 59.680 38.462 0.00 0.00 31.55 2.23
448 449 6.186957 ACACCAATGTCTTAGCAAATCCATA 58.813 36.000 0.00 0.00 31.55 2.74
449 450 5.018809 ACACCAATGTCTTAGCAAATCCAT 58.981 37.500 0.00 0.00 31.55 3.41
450 451 4.406456 ACACCAATGTCTTAGCAAATCCA 58.594 39.130 0.00 0.00 31.55 3.41
451 452 5.391312 AACACCAATGTCTTAGCAAATCC 57.609 39.130 0.00 0.00 38.45 3.01
452 453 6.366061 GGAAAACACCAATGTCTTAGCAAATC 59.634 38.462 0.00 0.00 38.45 2.17
453 454 6.183360 TGGAAAACACCAATGTCTTAGCAAAT 60.183 34.615 0.00 0.00 38.45 2.32
454 455 5.127845 TGGAAAACACCAATGTCTTAGCAAA 59.872 36.000 0.00 0.00 38.45 3.68
455 456 4.646945 TGGAAAACACCAATGTCTTAGCAA 59.353 37.500 0.00 0.00 38.45 3.91
456 457 4.211125 TGGAAAACACCAATGTCTTAGCA 58.789 39.130 0.00 0.00 38.45 3.49
457 458 4.846779 TGGAAAACACCAATGTCTTAGC 57.153 40.909 0.00 0.00 38.45 3.09
458 459 5.163513 GCATGGAAAACACCAATGTCTTAG 58.836 41.667 0.00 0.00 43.47 2.18
459 460 4.586421 TGCATGGAAAACACCAATGTCTTA 59.414 37.500 0.00 0.00 43.47 2.10
460 461 3.387374 TGCATGGAAAACACCAATGTCTT 59.613 39.130 0.00 0.00 43.47 3.01
461 462 2.964464 TGCATGGAAAACACCAATGTCT 59.036 40.909 0.00 0.00 43.47 3.41
462 463 3.243839 ACTGCATGGAAAACACCAATGTC 60.244 43.478 0.00 0.00 43.47 3.06
463 464 2.699846 ACTGCATGGAAAACACCAATGT 59.300 40.909 0.00 0.00 43.47 2.71
464 465 3.389925 ACTGCATGGAAAACACCAATG 57.610 42.857 0.00 0.00 43.47 2.82
465 466 4.343526 TGTAACTGCATGGAAAACACCAAT 59.656 37.500 0.00 0.00 43.47 3.16
466 467 3.701542 TGTAACTGCATGGAAAACACCAA 59.298 39.130 0.00 0.00 43.47 3.67
467 468 3.067461 GTGTAACTGCATGGAAAACACCA 59.933 43.478 12.54 0.00 44.41 4.17
468 469 3.067461 TGTGTAACTGCATGGAAAACACC 59.933 43.478 17.76 6.48 38.04 4.16
469 470 4.300189 TGTGTAACTGCATGGAAAACAC 57.700 40.909 15.22 15.22 38.04 3.32
470 471 4.582240 TGATGTGTAACTGCATGGAAAACA 59.418 37.500 0.00 0.00 38.04 2.83
471 472 5.119931 TGATGTGTAACTGCATGGAAAAC 57.880 39.130 0.00 0.00 38.04 2.43
472 473 5.981088 ATGATGTGTAACTGCATGGAAAA 57.019 34.783 0.00 0.00 38.04 2.29
473 474 5.476254 TGAATGATGTGTAACTGCATGGAAA 59.524 36.000 0.00 0.00 38.04 3.13
474 475 5.008980 TGAATGATGTGTAACTGCATGGAA 58.991 37.500 0.00 0.00 38.04 3.53
475 476 4.587891 TGAATGATGTGTAACTGCATGGA 58.412 39.130 0.00 0.00 38.04 3.41
476 477 4.397103 ACTGAATGATGTGTAACTGCATGG 59.603 41.667 0.00 0.00 38.04 3.66
477 478 5.556355 ACTGAATGATGTGTAACTGCATG 57.444 39.130 0.00 0.00 38.04 4.06
478 479 6.881065 AGTAACTGAATGATGTGTAACTGCAT 59.119 34.615 0.00 0.00 38.04 3.96
479 480 6.230472 AGTAACTGAATGATGTGTAACTGCA 58.770 36.000 0.00 0.00 38.04 4.41
480 481 6.183360 GGAGTAACTGAATGATGTGTAACTGC 60.183 42.308 0.00 0.00 38.04 4.40
481 482 7.099764 AGGAGTAACTGAATGATGTGTAACTG 58.900 38.462 0.00 0.00 38.04 3.16
482 483 7.246171 AGGAGTAACTGAATGATGTGTAACT 57.754 36.000 0.00 0.00 38.04 2.24
483 484 7.201444 CGAAGGAGTAACTGAATGATGTGTAAC 60.201 40.741 0.00 0.00 37.35 2.50
484 485 6.811665 CGAAGGAGTAACTGAATGATGTGTAA 59.188 38.462 0.00 0.00 0.00 2.41
485 486 6.152154 TCGAAGGAGTAACTGAATGATGTGTA 59.848 38.462 0.00 0.00 0.00 2.90
486 487 5.047306 TCGAAGGAGTAACTGAATGATGTGT 60.047 40.000 0.00 0.00 0.00 3.72
487 488 5.410924 TCGAAGGAGTAACTGAATGATGTG 58.589 41.667 0.00 0.00 0.00 3.21
488 489 5.655488 CTCGAAGGAGTAACTGAATGATGT 58.345 41.667 0.00 0.00 35.48 3.06
489 490 4.505922 GCTCGAAGGAGTAACTGAATGATG 59.494 45.833 0.00 0.00 42.53 3.07
490 491 4.404073 AGCTCGAAGGAGTAACTGAATGAT 59.596 41.667 0.00 0.00 42.53 2.45
491 492 3.764434 AGCTCGAAGGAGTAACTGAATGA 59.236 43.478 0.00 0.00 42.53 2.57
492 493 4.109050 GAGCTCGAAGGAGTAACTGAATG 58.891 47.826 0.00 0.00 42.53 2.67
493 494 3.131400 GGAGCTCGAAGGAGTAACTGAAT 59.869 47.826 7.83 0.00 42.53 2.57
494 495 2.492484 GGAGCTCGAAGGAGTAACTGAA 59.508 50.000 7.83 0.00 42.53 3.02
495 496 2.093106 GGAGCTCGAAGGAGTAACTGA 58.907 52.381 7.83 0.00 42.53 3.41
496 497 2.096248 AGGAGCTCGAAGGAGTAACTG 58.904 52.381 7.83 0.00 42.53 3.16
497 498 2.517998 AGGAGCTCGAAGGAGTAACT 57.482 50.000 7.83 0.00 42.53 2.24
498 499 3.004944 CCATAGGAGCTCGAAGGAGTAAC 59.995 52.174 7.83 0.00 42.53 2.50
499 500 3.117625 TCCATAGGAGCTCGAAGGAGTAA 60.118 47.826 7.83 0.00 42.53 2.24
500 501 2.442126 TCCATAGGAGCTCGAAGGAGTA 59.558 50.000 7.83 0.00 42.53 2.59
501 502 1.215673 TCCATAGGAGCTCGAAGGAGT 59.784 52.381 7.83 0.00 42.53 3.85
502 503 1.988293 TCCATAGGAGCTCGAAGGAG 58.012 55.000 7.83 0.00 43.46 3.69
503 504 2.091830 TCTTCCATAGGAGCTCGAAGGA 60.092 50.000 21.04 16.26 32.58 3.36
504 505 2.035321 GTCTTCCATAGGAGCTCGAAGG 59.965 54.545 21.04 14.61 32.58 3.46
505 506 2.035321 GGTCTTCCATAGGAGCTCGAAG 59.965 54.545 17.43 17.43 31.21 3.79
506 507 2.032620 GGTCTTCCATAGGAGCTCGAA 58.967 52.381 7.83 4.27 31.21 3.71
507 508 1.215673 AGGTCTTCCATAGGAGCTCGA 59.784 52.381 7.83 0.00 35.75 4.04
508 509 1.611491 GAGGTCTTCCATAGGAGCTCG 59.389 57.143 7.83 0.00 43.71 5.03
509 510 1.611491 CGAGGTCTTCCATAGGAGCTC 59.389 57.143 4.71 4.71 46.92 4.09
510 511 1.063567 ACGAGGTCTTCCATAGGAGCT 60.064 52.381 0.00 0.00 42.02 4.09
511 512 1.404843 ACGAGGTCTTCCATAGGAGC 58.595 55.000 0.00 0.00 35.89 4.70
512 513 4.208746 AGTTACGAGGTCTTCCATAGGAG 58.791 47.826 0.00 0.00 35.89 3.69
513 514 4.246712 AGTTACGAGGTCTTCCATAGGA 57.753 45.455 0.00 0.00 35.89 2.94
514 515 4.401519 TGAAGTTACGAGGTCTTCCATAGG 59.598 45.833 0.00 0.00 37.39 2.57
515 516 5.578005 TGAAGTTACGAGGTCTTCCATAG 57.422 43.478 0.00 0.00 37.39 2.23
516 517 5.623824 GCTTGAAGTTACGAGGTCTTCCATA 60.624 44.000 0.00 0.00 37.39 2.74
517 518 4.822026 CTTGAAGTTACGAGGTCTTCCAT 58.178 43.478 0.00 0.00 37.39 3.41
518 519 3.554337 GCTTGAAGTTACGAGGTCTTCCA 60.554 47.826 0.00 0.00 37.39 3.53
519 520 2.994578 GCTTGAAGTTACGAGGTCTTCC 59.005 50.000 0.00 0.00 37.39 3.46
520 521 3.429207 GTGCTTGAAGTTACGAGGTCTTC 59.571 47.826 0.00 0.00 38.30 2.87
521 522 3.181469 TGTGCTTGAAGTTACGAGGTCTT 60.181 43.478 0.00 0.00 0.00 3.01
522 523 2.364324 TGTGCTTGAAGTTACGAGGTCT 59.636 45.455 0.00 0.00 0.00 3.85
523 524 2.750948 TGTGCTTGAAGTTACGAGGTC 58.249 47.619 0.00 0.00 0.00 3.85
524 525 2.870411 GTTGTGCTTGAAGTTACGAGGT 59.130 45.455 0.00 0.00 0.00 3.85
525 526 2.223377 GGTTGTGCTTGAAGTTACGAGG 59.777 50.000 0.00 0.00 0.00 4.63
569 570 2.354704 GGGTTTGGATCACAGACGATCA 60.355 50.000 0.00 0.00 43.07 2.92
743 744 8.964772 CACTTTCTCTTCCTTATTCCATTTCAT 58.035 33.333 0.00 0.00 0.00 2.57
783 784 5.535333 ACCTCAAAATTGACTTGCATCTTG 58.465 37.500 0.00 0.00 32.90 3.02
890 892 5.152623 AGGAGATCAAAATGTGAGTCGAA 57.847 39.130 0.00 0.00 40.43 3.71
1020 1023 3.788797 GCTTTCGTGATAAGGCAAATCCG 60.789 47.826 0.00 0.00 40.77 4.18
1050 1053 4.813296 GTGTGACTTCCTCAAACGAAAT 57.187 40.909 0.00 0.00 26.84 2.17
1111 1116 3.525609 GGAGGAAGAAGAGGGGATTTCTT 59.474 47.826 0.00 0.00 44.10 2.52
1183 1189 4.511527 CATGCCATTAGATAGATCCGCTT 58.488 43.478 0.00 0.00 0.00 4.68
1212 1218 3.119602 ACGGGAATATATCACATCCGACG 60.120 47.826 14.61 8.01 39.31 5.12
1225 1231 4.487714 AAGTGATGTGACACGGGAATAT 57.512 40.909 0.00 0.00 44.35 1.28
1231 1237 3.809832 AGAAAGAAAGTGATGTGACACGG 59.190 43.478 0.22 0.00 44.35 4.94
1243 1249 5.590976 AATGGAGGGAGAAGAAAGAAAGT 57.409 39.130 0.00 0.00 0.00 2.66
1369 1375 2.048222 CCGCTCTGAGTTTGCCGA 60.048 61.111 6.53 0.00 0.00 5.54
1408 1414 1.560860 GGCTTCGATGATGCCGCTAC 61.561 60.000 7.81 0.00 41.68 3.58
1422 1428 1.149148 GAGGAGACGTGTTTGGCTTC 58.851 55.000 0.00 0.00 0.00 3.86
1470 1476 8.293114 AGCGAAATTAGTTGTTATGTTTTTGG 57.707 30.769 0.00 0.00 0.00 3.28
1566 1572 7.721409 TCTGATCAAATTGGATTGGATGAAA 57.279 32.000 0.00 0.00 33.11 2.69
1827 1834 1.469917 CGCATGTCGGCAAATGATTC 58.530 50.000 0.00 0.00 33.78 2.52
1898 1905 4.157849 TGTTGTACTTGATTCACCCACA 57.842 40.909 0.00 0.00 0.00 4.17
1943 1950 3.280920 CGTAGCAGAGCCCAATCTC 57.719 57.895 0.00 0.00 0.00 2.75
1982 1989 2.068519 CAGTCAGCAATGCGTACTTCA 58.931 47.619 11.77 0.00 0.00 3.02
2022 2029 8.671384 ACTCTGACTTGATTAGCTACTAGTAG 57.329 38.462 23.25 23.25 36.29 2.57
2095 2102 0.321919 ACGCGTGGGTGAGTAGAGTA 60.322 55.000 12.93 0.00 0.00 2.59
2192 2199 1.265454 CGGCCTCCTTAGTCACCCTT 61.265 60.000 0.00 0.00 0.00 3.95
2256 2263 6.763135 CCTAACTAACAATTATGCTGCTCTCA 59.237 38.462 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.