Multiple sequence alignment - TraesCS2D01G246500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G246500 chr2D 100.000 2762 0 0 1 2762 288164346 288161585 0.000000e+00 5101
1 TraesCS2D01G246500 chr2D 89.721 681 37 14 67 729 434178808 434178143 0.000000e+00 839
2 TraesCS2D01G246500 chr2D 90.706 581 32 20 69 633 477897287 477896713 0.000000e+00 754
3 TraesCS2D01G246500 chr2D 89.369 602 40 17 68 654 387277507 387278099 0.000000e+00 736
4 TraesCS2D01G246500 chr2D 87.480 631 35 23 1109 1731 36535194 36535788 0.000000e+00 688
5 TraesCS2D01G246500 chr2D 88.743 533 47 9 2233 2762 33338379 33337857 8.340000e-180 640
6 TraesCS2D01G246500 chr4D 98.356 2068 18 3 711 2762 188962436 188964503 0.000000e+00 3616
7 TraesCS2D01G246500 chr4D 85.466 633 27 14 1038 1669 146028915 146028347 1.420000e-167 599
8 TraesCS2D01G246500 chr5D 93.544 666 35 6 69 729 239632871 239632209 0.000000e+00 985
9 TraesCS2D01G246500 chr5D 93.920 625 31 6 65 686 239668033 239667413 0.000000e+00 937
10 TraesCS2D01G246500 chr5D 88.743 533 50 8 2233 2762 10495568 10495043 0.000000e+00 643
11 TraesCS2D01G246500 chr5D 90.760 487 27 5 1761 2236 148236531 148236052 3.880000e-178 634
12 TraesCS2D01G246500 chr7D 92.654 667 24 8 63 719 403408642 403407991 0.000000e+00 937
13 TraesCS2D01G246500 chr7D 93.651 630 27 5 69 687 385272018 385271391 0.000000e+00 929
14 TraesCS2D01G246500 chr7D 88.555 533 51 8 2233 2762 2872942 2872417 3.000000e-179 638
15 TraesCS2D01G246500 chr6D 91.176 680 35 19 69 729 135820531 135821204 0.000000e+00 900
16 TraesCS2D01G246500 chr6D 90.922 683 38 18 66 729 135812267 135812944 0.000000e+00 896
17 TraesCS2D01G246500 chr6D 95.000 520 25 1 2220 2738 443355392 443355911 0.000000e+00 815
18 TraesCS2D01G246500 chr6D 94.253 522 27 2 2220 2738 443464573 443465094 0.000000e+00 795
19 TraesCS2D01G246500 chr6D 91.166 566 38 11 69 626 142271475 142272036 0.000000e+00 758
20 TraesCS2D01G246500 chr6D 91.692 325 25 2 722 1045 23362211 23362534 1.510000e-122 449
21 TraesCS2D01G246500 chr6D 90.813 283 26 0 751 1033 462917924 462918206 2.010000e-101 379
22 TraesCS2D01G246500 chr1D 90.896 681 38 10 69 729 213782864 213783540 0.000000e+00 893
23 TraesCS2D01G246500 chr1D 92.744 317 22 1 729 1045 78365481 78365166 9.020000e-125 457
24 TraesCS2D01G246500 chr1D 78.173 197 35 7 1315 1507 316235338 316235530 4.830000e-23 119
25 TraesCS2D01G246500 chr5B 94.746 571 29 1 2193 2762 634279310 634278740 0.000000e+00 887
26 TraesCS2D01G246500 chr5B 91.848 552 34 5 1039 1581 634280302 634279753 0.000000e+00 760
27 TraesCS2D01G246500 chr5B 86.517 534 61 9 2233 2762 76158356 76158882 6.630000e-161 577
28 TraesCS2D01G246500 chr5B 90.397 302 27 1 744 1045 634280649 634280350 1.990000e-106 396
29 TraesCS2D01G246500 chr5B 94.059 101 6 0 1660 1760 634279755 634279655 1.320000e-33 154
30 TraesCS2D01G246500 chr3A 89.489 666 46 16 68 712 294970348 294971010 0.000000e+00 821
31 TraesCS2D01G246500 chr3A 87.179 585 57 9 157 729 263489496 263490074 0.000000e+00 649
32 TraesCS2D01G246500 chr3A 90.164 488 35 6 1761 2236 589831379 589831865 8.400000e-175 623
33 TraesCS2D01G246500 chr3A 88.015 534 49 9 2233 2762 107617928 107617406 3.910000e-173 617
34 TraesCS2D01G246500 chr3A 96.000 225 9 0 812 1036 21101199 21101423 1.560000e-97 366
35 TraesCS2D01G246500 chrUn 90.563 604 37 6 1066 1669 427445403 427445986 0.000000e+00 782
36 TraesCS2D01G246500 chrUn 90.594 202 17 2 722 922 465772843 465772643 1.630000e-67 267
37 TraesCS2D01G246500 chr1A 90.924 595 34 6 1075 1669 514433969 514433395 0.000000e+00 782
38 TraesCS2D01G246500 chr1A 90.924 595 34 6 1075 1669 514503255 514502681 0.000000e+00 782
39 TraesCS2D01G246500 chr1A 85.033 608 58 16 1131 1731 236303444 236302863 3.060000e-164 588
40 TraesCS2D01G246500 chr5A 87.812 681 56 20 69 729 525949995 525949322 0.000000e+00 773
41 TraesCS2D01G246500 chr5A 89.549 488 37 7 1761 2236 37147125 37146640 8.460000e-170 606
42 TraesCS2D01G246500 chr2B 88.387 620 39 19 1135 1731 62546746 62547355 0.000000e+00 715
43 TraesCS2D01G246500 chr2A 86.928 612 53 16 1131 1731 40537623 40538218 0.000000e+00 662
44 TraesCS2D01G246500 chr2A 89.139 488 39 7 1761 2236 142697551 142698036 1.830000e-166 595
45 TraesCS2D01G246500 chr2A 91.692 325 24 3 722 1045 191876808 191877130 5.430000e-122 448
46 TraesCS2D01G246500 chr2A 85.507 207 10 6 839 1045 14901197 14901383 6.030000e-47 198
47 TraesCS2D01G246500 chr6A 90.722 485 32 6 1761 2233 603055825 603056308 3.880000e-178 634
48 TraesCS2D01G246500 chr7B 90.083 484 36 5 1761 2233 81406373 81406855 3.910000e-173 617
49 TraesCS2D01G246500 chr7A 89.549 488 38 6 1761 2236 461943568 461943082 8.460000e-170 606
50 TraesCS2D01G246500 chr7A 89.344 488 39 6 1761 2236 461938440 461937954 3.940000e-168 601
51 TraesCS2D01G246500 chr4A 89.590 317 32 1 729 1045 690154356 690154671 4.280000e-108 401
52 TraesCS2D01G246500 chr3B 88.012 342 29 7 1762 2092 819488883 819489223 7.170000e-106 394


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G246500 chr2D 288161585 288164346 2761 True 5101.00 5101 100.0000 1 2762 1 chr2D.!!$R2 2761
1 TraesCS2D01G246500 chr2D 434178143 434178808 665 True 839.00 839 89.7210 67 729 1 chr2D.!!$R3 662
2 TraesCS2D01G246500 chr2D 477896713 477897287 574 True 754.00 754 90.7060 69 633 1 chr2D.!!$R4 564
3 TraesCS2D01G246500 chr2D 387277507 387278099 592 False 736.00 736 89.3690 68 654 1 chr2D.!!$F2 586
4 TraesCS2D01G246500 chr2D 36535194 36535788 594 False 688.00 688 87.4800 1109 1731 1 chr2D.!!$F1 622
5 TraesCS2D01G246500 chr2D 33337857 33338379 522 True 640.00 640 88.7430 2233 2762 1 chr2D.!!$R1 529
6 TraesCS2D01G246500 chr4D 188962436 188964503 2067 False 3616.00 3616 98.3560 711 2762 1 chr4D.!!$F1 2051
7 TraesCS2D01G246500 chr4D 146028347 146028915 568 True 599.00 599 85.4660 1038 1669 1 chr4D.!!$R1 631
8 TraesCS2D01G246500 chr5D 239632209 239632871 662 True 985.00 985 93.5440 69 729 1 chr5D.!!$R3 660
9 TraesCS2D01G246500 chr5D 239667413 239668033 620 True 937.00 937 93.9200 65 686 1 chr5D.!!$R4 621
10 TraesCS2D01G246500 chr5D 10495043 10495568 525 True 643.00 643 88.7430 2233 2762 1 chr5D.!!$R1 529
11 TraesCS2D01G246500 chr7D 403407991 403408642 651 True 937.00 937 92.6540 63 719 1 chr7D.!!$R3 656
12 TraesCS2D01G246500 chr7D 385271391 385272018 627 True 929.00 929 93.6510 69 687 1 chr7D.!!$R2 618
13 TraesCS2D01G246500 chr7D 2872417 2872942 525 True 638.00 638 88.5550 2233 2762 1 chr7D.!!$R1 529
14 TraesCS2D01G246500 chr6D 135820531 135821204 673 False 900.00 900 91.1760 69 729 1 chr6D.!!$F3 660
15 TraesCS2D01G246500 chr6D 135812267 135812944 677 False 896.00 896 90.9220 66 729 1 chr6D.!!$F2 663
16 TraesCS2D01G246500 chr6D 443355392 443355911 519 False 815.00 815 95.0000 2220 2738 1 chr6D.!!$F5 518
17 TraesCS2D01G246500 chr6D 443464573 443465094 521 False 795.00 795 94.2530 2220 2738 1 chr6D.!!$F6 518
18 TraesCS2D01G246500 chr6D 142271475 142272036 561 False 758.00 758 91.1660 69 626 1 chr6D.!!$F4 557
19 TraesCS2D01G246500 chr1D 213782864 213783540 676 False 893.00 893 90.8960 69 729 1 chr1D.!!$F1 660
20 TraesCS2D01G246500 chr5B 76158356 76158882 526 False 577.00 577 86.5170 2233 2762 1 chr5B.!!$F1 529
21 TraesCS2D01G246500 chr5B 634278740 634280649 1909 True 549.25 887 92.7625 744 2762 4 chr5B.!!$R1 2018
22 TraesCS2D01G246500 chr3A 294970348 294971010 662 False 821.00 821 89.4890 68 712 1 chr3A.!!$F3 644
23 TraesCS2D01G246500 chr3A 263489496 263490074 578 False 649.00 649 87.1790 157 729 1 chr3A.!!$F2 572
24 TraesCS2D01G246500 chr3A 107617406 107617928 522 True 617.00 617 88.0150 2233 2762 1 chr3A.!!$R1 529
25 TraesCS2D01G246500 chrUn 427445403 427445986 583 False 782.00 782 90.5630 1066 1669 1 chrUn.!!$F1 603
26 TraesCS2D01G246500 chr1A 514433395 514433969 574 True 782.00 782 90.9240 1075 1669 1 chr1A.!!$R2 594
27 TraesCS2D01G246500 chr1A 514502681 514503255 574 True 782.00 782 90.9240 1075 1669 1 chr1A.!!$R3 594
28 TraesCS2D01G246500 chr1A 236302863 236303444 581 True 588.00 588 85.0330 1131 1731 1 chr1A.!!$R1 600
29 TraesCS2D01G246500 chr5A 525949322 525949995 673 True 773.00 773 87.8120 69 729 1 chr5A.!!$R2 660
30 TraesCS2D01G246500 chr2B 62546746 62547355 609 False 715.00 715 88.3870 1135 1731 1 chr2B.!!$F1 596
31 TraesCS2D01G246500 chr2A 40537623 40538218 595 False 662.00 662 86.9280 1131 1731 1 chr2A.!!$F2 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.593128 ATGGCGCAAAGTCTTCACAC 59.407 50.0 10.83 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2330 2.418714 GAGATTAAACGTTCGCTTGCG 58.581 47.619 8.87 8.87 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.180817 GTTGGTTTAGCAATTGGTATGGC 58.819 43.478 17.52 10.58 0.00 4.40
23 24 2.425312 TGGTTTAGCAATTGGTATGGCG 59.575 45.455 17.52 0.00 35.73 5.69
24 25 2.459934 GTTTAGCAATTGGTATGGCGC 58.540 47.619 17.52 0.00 35.73 6.53
25 26 1.756430 TTAGCAATTGGTATGGCGCA 58.244 45.000 17.52 0.00 35.73 6.09
26 27 1.756430 TAGCAATTGGTATGGCGCAA 58.244 45.000 13.22 0.00 35.73 4.85
27 28 0.894141 AGCAATTGGTATGGCGCAAA 59.106 45.000 10.83 0.00 35.73 3.68
28 29 1.135024 AGCAATTGGTATGGCGCAAAG 60.135 47.619 10.83 0.00 35.73 2.77
29 30 1.404047 GCAATTGGTATGGCGCAAAGT 60.404 47.619 10.83 0.00 0.00 2.66
30 31 2.529151 CAATTGGTATGGCGCAAAGTC 58.471 47.619 10.83 0.00 0.00 3.01
31 32 2.128771 ATTGGTATGGCGCAAAGTCT 57.871 45.000 10.83 0.00 0.00 3.24
32 33 1.904287 TTGGTATGGCGCAAAGTCTT 58.096 45.000 10.83 0.00 0.00 3.01
33 34 1.448985 TGGTATGGCGCAAAGTCTTC 58.551 50.000 10.83 0.00 0.00 2.87
34 35 1.271108 TGGTATGGCGCAAAGTCTTCA 60.271 47.619 10.83 0.00 0.00 3.02
35 36 1.130561 GGTATGGCGCAAAGTCTTCAC 59.869 52.381 10.83 0.00 0.00 3.18
36 37 1.804151 GTATGGCGCAAAGTCTTCACA 59.196 47.619 10.83 0.00 0.00 3.58
37 38 0.593128 ATGGCGCAAAGTCTTCACAC 59.407 50.000 10.83 0.00 0.00 3.82
38 39 1.082756 GGCGCAAAGTCTTCACACG 60.083 57.895 10.83 0.00 0.00 4.49
39 40 1.641677 GCGCAAAGTCTTCACACGT 59.358 52.632 0.30 0.00 0.00 4.49
40 41 0.856641 GCGCAAAGTCTTCACACGTA 59.143 50.000 0.30 0.00 0.00 3.57
41 42 1.459592 GCGCAAAGTCTTCACACGTAT 59.540 47.619 0.30 0.00 0.00 3.06
42 43 2.721797 GCGCAAAGTCTTCACACGTATG 60.722 50.000 0.30 0.00 0.00 2.39
43 44 2.475111 CGCAAAGTCTTCACACGTATGT 59.525 45.455 0.00 0.00 40.80 2.29
44 45 3.671459 CGCAAAGTCTTCACACGTATGTA 59.329 43.478 0.00 0.00 36.72 2.29
45 46 4.201494 CGCAAAGTCTTCACACGTATGTAG 60.201 45.833 0.00 0.00 36.72 2.74
46 47 4.684703 GCAAAGTCTTCACACGTATGTAGT 59.315 41.667 0.22 0.00 36.72 2.73
47 48 5.164080 GCAAAGTCTTCACACGTATGTAGTC 60.164 44.000 0.22 0.00 36.72 2.59
48 49 4.337985 AGTCTTCACACGTATGTAGTCG 57.662 45.455 0.22 0.00 36.72 4.18
49 50 3.126514 AGTCTTCACACGTATGTAGTCGG 59.873 47.826 0.22 0.00 36.72 4.79
50 51 3.125829 GTCTTCACACGTATGTAGTCGGA 59.874 47.826 0.22 0.00 36.72 4.55
51 52 3.943381 TCTTCACACGTATGTAGTCGGAT 59.057 43.478 0.22 0.00 36.72 4.18
52 53 3.957671 TCACACGTATGTAGTCGGATC 57.042 47.619 0.00 0.00 36.72 3.36
53 54 3.272581 TCACACGTATGTAGTCGGATCA 58.727 45.455 0.00 0.00 36.72 2.92
54 55 3.881089 TCACACGTATGTAGTCGGATCAT 59.119 43.478 0.00 0.00 36.72 2.45
55 56 4.024302 TCACACGTATGTAGTCGGATCATC 60.024 45.833 0.00 0.00 36.72 2.92
56 57 3.881089 ACACGTATGTAGTCGGATCATCA 59.119 43.478 0.00 0.00 37.26 3.07
57 58 4.337274 ACACGTATGTAGTCGGATCATCAA 59.663 41.667 0.00 0.00 37.26 2.57
58 59 5.163591 ACACGTATGTAGTCGGATCATCAAA 60.164 40.000 0.00 0.00 37.26 2.69
59 60 5.399596 CACGTATGTAGTCGGATCATCAAAG 59.600 44.000 0.00 0.00 0.00 2.77
60 61 5.067413 ACGTATGTAGTCGGATCATCAAAGT 59.933 40.000 0.00 0.00 0.00 2.66
61 62 5.977725 CGTATGTAGTCGGATCATCAAAGTT 59.022 40.000 0.00 0.00 0.00 2.66
62 63 6.074835 CGTATGTAGTCGGATCATCAAAGTTG 60.075 42.308 0.00 0.00 0.00 3.16
63 64 5.400066 TGTAGTCGGATCATCAAAGTTGA 57.600 39.130 0.00 0.00 42.14 3.18
64 65 5.168569 TGTAGTCGGATCATCAAAGTTGAC 58.831 41.667 0.00 0.00 40.49 3.18
65 66 4.543590 AGTCGGATCATCAAAGTTGACT 57.456 40.909 0.00 0.00 40.49 3.41
82 83 5.531287 AGTTGACTTCTGTAACATCCCAAAC 59.469 40.000 0.00 0.00 0.00 2.93
788 851 1.357334 CGACTCTTCCTAGCCGCTC 59.643 63.158 0.00 0.00 0.00 5.03
1824 2027 1.828224 GTCAAATCCCCATCCCGCC 60.828 63.158 0.00 0.00 0.00 6.13
2115 2330 0.468771 CCTGGGATTCATCAAGGGCC 60.469 60.000 0.00 0.00 31.86 5.80
2147 2362 5.727434 ACGTTTAATCTCGGTATTCTTGGT 58.273 37.500 0.00 0.00 0.00 3.67
2315 2530 0.992802 GTTCATCGCCTCTCAACGAC 59.007 55.000 0.00 0.00 41.76 4.34
2442 2657 5.066117 GGTGCTATGATGATGATTGCCTATG 59.934 44.000 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.798145 GCGCCATACCAATTGCTAAACC 60.798 50.000 0.00 0.00 0.00 3.27
4 5 2.159310 TGCGCCATACCAATTGCTAAAC 60.159 45.455 4.18 0.00 0.00 2.01
5 6 2.095461 TGCGCCATACCAATTGCTAAA 58.905 42.857 4.18 0.00 0.00 1.85
7 8 1.756430 TTGCGCCATACCAATTGCTA 58.244 45.000 4.18 0.00 0.00 3.49
8 9 0.894141 TTTGCGCCATACCAATTGCT 59.106 45.000 4.18 0.00 0.00 3.91
9 10 1.280066 CTTTGCGCCATACCAATTGC 58.720 50.000 4.18 0.00 0.00 3.56
10 11 2.164219 AGACTTTGCGCCATACCAATTG 59.836 45.455 4.18 0.00 0.00 2.32
11 12 2.446435 AGACTTTGCGCCATACCAATT 58.554 42.857 4.18 0.00 0.00 2.32
12 13 2.128771 AGACTTTGCGCCATACCAAT 57.871 45.000 4.18 0.00 0.00 3.16
13 14 1.810151 GAAGACTTTGCGCCATACCAA 59.190 47.619 4.18 0.00 0.00 3.67
14 15 1.271108 TGAAGACTTTGCGCCATACCA 60.271 47.619 4.18 0.00 0.00 3.25
15 16 1.130561 GTGAAGACTTTGCGCCATACC 59.869 52.381 4.18 0.00 0.00 2.73
16 17 1.804151 TGTGAAGACTTTGCGCCATAC 59.196 47.619 4.18 0.00 0.00 2.39
17 18 1.804151 GTGTGAAGACTTTGCGCCATA 59.196 47.619 4.18 0.00 0.00 2.74
18 19 0.593128 GTGTGAAGACTTTGCGCCAT 59.407 50.000 4.18 0.00 0.00 4.40
19 20 1.771073 CGTGTGAAGACTTTGCGCCA 61.771 55.000 4.18 0.00 0.00 5.69
20 21 1.082756 CGTGTGAAGACTTTGCGCC 60.083 57.895 4.18 0.00 0.00 6.53
21 22 0.856641 TACGTGTGAAGACTTTGCGC 59.143 50.000 0.00 0.00 0.00 6.09
22 23 2.475111 ACATACGTGTGAAGACTTTGCG 59.525 45.455 19.87 0.00 37.14 4.85
23 24 4.684703 ACTACATACGTGTGAAGACTTTGC 59.315 41.667 19.87 0.00 39.39 3.68
24 25 5.059343 CGACTACATACGTGTGAAGACTTTG 59.941 44.000 19.87 0.00 39.39 2.77
25 26 5.152097 CGACTACATACGTGTGAAGACTTT 58.848 41.667 19.87 0.00 39.39 2.66
26 27 4.379186 CCGACTACATACGTGTGAAGACTT 60.379 45.833 19.87 0.00 39.39 3.01
27 28 3.126514 CCGACTACATACGTGTGAAGACT 59.873 47.826 19.87 0.00 39.39 3.24
28 29 3.125829 TCCGACTACATACGTGTGAAGAC 59.874 47.826 19.87 6.75 39.39 3.01
29 30 3.337358 TCCGACTACATACGTGTGAAGA 58.663 45.455 19.87 2.97 39.39 2.87
30 31 3.752412 TCCGACTACATACGTGTGAAG 57.248 47.619 19.87 3.86 39.39 3.02
31 32 3.690628 TGATCCGACTACATACGTGTGAA 59.309 43.478 19.87 0.00 39.39 3.18
32 33 3.272581 TGATCCGACTACATACGTGTGA 58.727 45.455 19.87 2.00 39.39 3.58
33 34 3.685836 TGATCCGACTACATACGTGTG 57.314 47.619 11.09 11.09 39.39 3.82
34 35 3.881089 TGATGATCCGACTACATACGTGT 59.119 43.478 0.00 0.00 42.39 4.49
35 36 4.483476 TGATGATCCGACTACATACGTG 57.517 45.455 0.00 0.00 0.00 4.49
36 37 5.067413 ACTTTGATGATCCGACTACATACGT 59.933 40.000 0.00 0.00 0.00 3.57
37 38 5.520632 ACTTTGATGATCCGACTACATACG 58.479 41.667 0.00 0.00 0.00 3.06
38 39 6.978659 TCAACTTTGATGATCCGACTACATAC 59.021 38.462 0.00 0.00 31.01 2.39
39 40 6.978659 GTCAACTTTGATGATCCGACTACATA 59.021 38.462 0.00 0.00 39.73 2.29
40 41 5.812642 GTCAACTTTGATGATCCGACTACAT 59.187 40.000 0.00 0.00 39.73 2.29
41 42 5.047306 AGTCAACTTTGATGATCCGACTACA 60.047 40.000 0.00 0.00 39.73 2.74
42 43 5.411781 AGTCAACTTTGATGATCCGACTAC 58.588 41.667 0.00 0.00 39.73 2.73
43 44 5.661056 AGTCAACTTTGATGATCCGACTA 57.339 39.130 0.00 0.00 39.73 2.59
44 45 4.543590 AGTCAACTTTGATGATCCGACT 57.456 40.909 0.00 0.00 39.73 4.18
45 46 4.932200 AGAAGTCAACTTTGATGATCCGAC 59.068 41.667 0.00 0.00 39.73 4.79
46 47 4.931601 CAGAAGTCAACTTTGATGATCCGA 59.068 41.667 0.00 0.00 39.73 4.55
47 48 4.692625 ACAGAAGTCAACTTTGATGATCCG 59.307 41.667 0.00 0.00 39.73 4.18
48 49 7.173218 TGTTACAGAAGTCAACTTTGATGATCC 59.827 37.037 0.00 0.00 39.73 3.36
49 50 8.087982 TGTTACAGAAGTCAACTTTGATGATC 57.912 34.615 0.00 0.00 39.73 2.92
50 51 8.627208 ATGTTACAGAAGTCAACTTTGATGAT 57.373 30.769 0.00 0.00 39.73 2.45
51 52 7.173218 GGATGTTACAGAAGTCAACTTTGATGA 59.827 37.037 0.00 0.00 39.73 2.92
52 53 7.301054 GGATGTTACAGAAGTCAACTTTGATG 58.699 38.462 0.00 0.54 39.73 3.07
53 54 6.431234 GGGATGTTACAGAAGTCAACTTTGAT 59.569 38.462 0.00 0.00 39.73 2.57
54 55 5.763204 GGGATGTTACAGAAGTCAACTTTGA 59.237 40.000 0.00 0.00 36.11 2.69
55 56 5.530915 TGGGATGTTACAGAAGTCAACTTTG 59.469 40.000 0.00 1.24 36.11 2.77
56 57 5.690865 TGGGATGTTACAGAAGTCAACTTT 58.309 37.500 0.00 0.00 36.11 2.66
57 58 5.304686 TGGGATGTTACAGAAGTCAACTT 57.695 39.130 0.00 0.00 39.23 2.66
58 59 4.974645 TGGGATGTTACAGAAGTCAACT 57.025 40.909 0.00 0.00 0.00 3.16
59 60 5.531287 AGTTTGGGATGTTACAGAAGTCAAC 59.469 40.000 0.00 0.00 0.00 3.18
60 61 5.690865 AGTTTGGGATGTTACAGAAGTCAA 58.309 37.500 0.00 0.00 0.00 3.18
61 62 5.304686 AGTTTGGGATGTTACAGAAGTCA 57.695 39.130 0.00 0.00 0.00 3.41
62 63 6.262273 TGAAAGTTTGGGATGTTACAGAAGTC 59.738 38.462 0.00 0.00 0.00 3.01
63 64 6.126409 TGAAAGTTTGGGATGTTACAGAAGT 58.874 36.000 0.00 0.00 0.00 3.01
64 65 6.633500 TGAAAGTTTGGGATGTTACAGAAG 57.367 37.500 0.00 0.00 0.00 2.85
65 66 7.595819 ATTGAAAGTTTGGGATGTTACAGAA 57.404 32.000 0.00 0.00 0.00 3.02
216 219 8.915654 CCCTTTTCAGTATTTGAGAAAATTTCG 58.084 33.333 0.00 0.00 39.61 3.46
2115 2330 2.418714 GAGATTAAACGTTCGCTTGCG 58.581 47.619 8.87 8.87 0.00 4.85
2147 2362 3.321396 TGCTTCAAATCATTCAGGCACAA 59.679 39.130 0.00 0.00 0.00 3.33
2335 2550 1.882989 GCTCTGAACTGAGAGGCCGT 61.883 60.000 11.75 0.00 40.04 5.68
2442 2657 1.000274 GATGAACCCACACCAAAGCAC 60.000 52.381 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.