Multiple sequence alignment - TraesCS2D01G245300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G245300 chr2D 100.000 3240 0 0 1 3240 279057220 279053981 0.000000e+00 5984
1 TraesCS2D01G245300 chr2A 95.099 2122 57 15 268 2369 349720244 349722338 0.000000e+00 3299
2 TraesCS2D01G245300 chr2A 94.006 684 34 7 2561 3240 349723084 349723764 0.000000e+00 1029
3 TraesCS2D01G245300 chr2A 94.304 158 4 1 2416 2573 349722334 349722486 1.500000e-58 237
4 TraesCS2D01G245300 chr2B 96.056 1217 42 3 522 1733 318207272 318206057 0.000000e+00 1977
5 TraesCS2D01G245300 chr2B 95.332 557 22 2 1767 2323 318205003 318204451 0.000000e+00 881
6 TraesCS2D01G245300 chr2B 95.853 434 16 2 2325 2756 318204336 318203903 0.000000e+00 701
7 TraesCS2D01G245300 chr2B 92.292 480 21 9 2767 3240 318203689 318203220 0.000000e+00 667
8 TraesCS2D01G245300 chr2B 91.758 364 17 9 2877 3240 318151220 318150870 8.080000e-136 494
9 TraesCS2D01G245300 chr2B 82.479 234 27 6 307 526 318210617 318210384 3.300000e-45 193
10 TraesCS2D01G245300 chr7D 98.897 272 3 0 1 272 164124655 164124384 1.350000e-133 486
11 TraesCS2D01G245300 chr5D 98.195 277 4 1 1 276 412234541 412234817 1.750000e-132 483
12 TraesCS2D01G245300 chr3D 98.889 270 2 1 1 270 20890585 20890853 6.290000e-132 481
13 TraesCS2D01G245300 chr3D 97.417 271 6 1 1 270 500583179 500583449 8.190000e-126 460
14 TraesCS2D01G245300 chr1D 98.519 270 4 0 1 270 442410805 442410536 8.130000e-131 477
15 TraesCS2D01G245300 chr1D 97.133 279 7 1 1 279 409977311 409977588 1.360000e-128 470
16 TraesCS2D01G245300 chr6D 98.148 270 4 1 1 270 460560567 460560835 1.360000e-128 470
17 TraesCS2D01G245300 chr4D 97.786 271 6 0 1 271 346288305 346288575 4.890000e-128 468
18 TraesCS2D01G245300 chr4D 98.134 268 5 0 3 270 401519340 401519073 4.890000e-128 468
19 TraesCS2D01G245300 chr7B 82.639 144 21 4 422 563 157220383 157220242 1.220000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G245300 chr2D 279053981 279057220 3239 True 5984.000000 5984 100.000000 1 3240 1 chr2D.!!$R1 3239
1 TraesCS2D01G245300 chr2A 349720244 349723764 3520 False 1521.666667 3299 94.469667 268 3240 3 chr2A.!!$F1 2972
2 TraesCS2D01G245300 chr2B 318203220 318210617 7397 True 883.800000 1977 92.402400 307 3240 5 chr2B.!!$R2 2933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.109781 CACTTTACATGTGTGGCGCC 60.110 55.000 22.73 22.73 0.00 6.53 F
326 327 0.112801 GGTAGGAGGCCGGATCTACT 59.887 60.000 5.05 10.69 34.27 2.57 F
1060 4192 2.155279 CGAGGAAGATGGAGATCGCTA 58.845 52.381 0.00 0.00 33.34 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 4374 1.026182 TGCCATCGAGAACCATGCAC 61.026 55.000 0.00 0.00 0.00 4.57 R
1475 4607 3.075641 GTCTCCTCCGGTGGGTCC 61.076 72.222 22.07 6.61 33.83 4.46 R
2871 7962 0.258774 AGAGAGAGAGAGAGGCCACC 59.741 60.000 5.01 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.179764 ACATTACATGTGTGGCGCC 58.820 52.632 22.73 22.73 43.01 6.53
26 27 0.322456 ACATTACATGTGTGGCGCCT 60.322 50.000 29.70 7.80 43.01 5.52
27 28 1.065782 ACATTACATGTGTGGCGCCTA 60.066 47.619 29.70 14.39 43.01 3.93
28 29 1.599071 CATTACATGTGTGGCGCCTAG 59.401 52.381 29.70 12.91 0.00 3.02
47 48 2.747855 GGCTAGGCGCTGCACTTT 60.748 61.111 7.64 0.00 39.13 2.66
48 49 1.449601 GGCTAGGCGCTGCACTTTA 60.450 57.895 7.64 0.00 39.13 1.85
49 50 1.706287 GGCTAGGCGCTGCACTTTAC 61.706 60.000 7.64 0.00 39.13 2.01
50 51 1.019278 GCTAGGCGCTGCACTTTACA 61.019 55.000 7.64 0.00 35.14 2.41
51 52 1.656652 CTAGGCGCTGCACTTTACAT 58.343 50.000 7.64 0.00 0.00 2.29
52 53 1.328680 CTAGGCGCTGCACTTTACATG 59.671 52.381 7.64 0.00 0.00 3.21
53 54 0.606401 AGGCGCTGCACTTTACATGT 60.606 50.000 7.64 2.69 0.00 3.21
54 55 0.454957 GGCGCTGCACTTTACATGTG 60.455 55.000 9.11 0.00 38.36 3.21
55 56 0.238289 GCGCTGCACTTTACATGTGT 59.762 50.000 9.11 0.00 37.70 3.72
56 57 1.954437 CGCTGCACTTTACATGTGTG 58.046 50.000 9.11 9.51 37.70 3.82
57 58 1.400113 CGCTGCACTTTACATGTGTGG 60.400 52.381 9.11 0.35 37.70 4.17
58 59 1.666888 GCTGCACTTTACATGTGTGGC 60.667 52.381 9.11 4.63 37.70 5.01
59 60 0.590682 TGCACTTTACATGTGTGGCG 59.409 50.000 9.11 0.00 37.70 5.69
60 61 0.729140 GCACTTTACATGTGTGGCGC 60.729 55.000 9.11 0.00 37.70 6.53
61 62 0.109781 CACTTTACATGTGTGGCGCC 60.110 55.000 22.73 22.73 0.00 6.53
62 63 0.250727 ACTTTACATGTGTGGCGCCT 60.251 50.000 29.70 7.80 0.00 5.52
63 64 1.002659 ACTTTACATGTGTGGCGCCTA 59.997 47.619 29.70 14.39 0.00 3.93
64 65 1.665679 CTTTACATGTGTGGCGCCTAG 59.334 52.381 29.70 12.91 0.00 3.02
77 78 4.277593 CCTAGCTCGGAGGCGCTG 62.278 72.222 7.64 0.00 36.29 5.18
78 79 4.940593 CTAGCTCGGAGGCGCTGC 62.941 72.222 7.64 0.00 36.29 5.25
112 113 4.096003 CCAGGGGCTACCACGGTG 62.096 72.222 0.00 0.00 43.89 4.94
113 114 4.096003 CAGGGGCTACCACGGTGG 62.096 72.222 25.21 25.21 45.02 4.61
114 115 4.326227 AGGGGCTACCACGGTGGA 62.326 66.667 32.72 15.39 40.96 4.02
115 116 4.091939 GGGGCTACCACGGTGGAC 62.092 72.222 32.72 19.97 40.96 4.02
116 117 3.315949 GGGCTACCACGGTGGACA 61.316 66.667 32.72 18.22 40.96 4.02
117 118 2.264794 GGCTACCACGGTGGACAG 59.735 66.667 32.72 26.06 40.96 3.51
118 119 2.264794 GCTACCACGGTGGACAGG 59.735 66.667 32.72 18.42 40.96 4.00
119 120 2.280552 GCTACCACGGTGGACAGGA 61.281 63.158 32.72 11.35 40.96 3.86
120 121 1.890894 CTACCACGGTGGACAGGAG 59.109 63.158 32.72 16.33 40.96 3.69
121 122 0.898789 CTACCACGGTGGACAGGAGT 60.899 60.000 32.72 11.57 40.96 3.85
122 123 1.183030 TACCACGGTGGACAGGAGTG 61.183 60.000 32.72 3.96 40.96 3.51
123 124 2.357517 CACGGTGGACAGGAGTGC 60.358 66.667 0.00 0.00 36.51 4.40
124 125 2.842462 ACGGTGGACAGGAGTGCA 60.842 61.111 0.00 0.00 44.30 4.57
128 129 2.280797 TGGACAGGAGTGCAACGC 60.281 61.111 0.00 0.00 43.50 4.84
152 153 2.184322 GCTAGGCGCTGCACAGTA 59.816 61.111 7.64 0.00 35.14 2.74
153 154 1.880340 GCTAGGCGCTGCACAGTAG 60.880 63.158 7.64 0.00 35.14 2.57
154 155 1.227089 CTAGGCGCTGCACAGTAGG 60.227 63.158 7.64 0.00 0.00 3.18
155 156 2.635229 CTAGGCGCTGCACAGTAGGG 62.635 65.000 7.64 0.00 0.00 3.53
156 157 4.394712 GGCGCTGCACAGTAGGGT 62.395 66.667 7.64 0.00 0.00 4.34
157 158 3.121030 GCGCTGCACAGTAGGGTG 61.121 66.667 0.00 0.00 41.72 4.61
158 159 2.343758 CGCTGCACAGTAGGGTGT 59.656 61.111 0.00 0.00 40.89 4.16
160 161 1.672356 GCTGCACAGTAGGGTGTGG 60.672 63.158 6.16 0.00 46.73 4.17
161 162 1.672356 CTGCACAGTAGGGTGTGGC 60.672 63.158 6.16 0.03 46.73 5.01
162 163 2.742372 GCACAGTAGGGTGTGGCG 60.742 66.667 6.16 0.00 46.73 5.69
163 164 2.742372 CACAGTAGGGTGTGGCGC 60.742 66.667 0.00 0.00 43.56 6.53
164 165 4.016706 ACAGTAGGGTGTGGCGCC 62.017 66.667 22.73 22.73 0.00 6.53
186 187 4.627801 TGGCGGGCGCTACACAAA 62.628 61.111 7.64 0.00 41.60 2.83
187 188 3.358707 GGCGGGCGCTACACAAAA 61.359 61.111 7.64 0.00 41.60 2.44
188 189 2.175811 GCGGGCGCTACACAAAAG 59.824 61.111 7.64 0.00 38.26 2.27
189 190 2.867472 CGGGCGCTACACAAAAGG 59.133 61.111 7.64 0.00 0.00 3.11
190 191 2.686816 CGGGCGCTACACAAAAGGG 61.687 63.158 7.64 0.00 0.00 3.95
191 192 1.602605 GGGCGCTACACAAAAGGGT 60.603 57.895 7.64 0.00 0.00 4.34
192 193 1.583495 GGGCGCTACACAAAAGGGTC 61.583 60.000 7.64 0.00 0.00 4.46
193 194 0.887387 GGCGCTACACAAAAGGGTCA 60.887 55.000 7.64 0.00 32.25 4.02
194 195 0.517316 GCGCTACACAAAAGGGTCAG 59.483 55.000 0.00 0.00 0.00 3.51
195 196 1.156736 CGCTACACAAAAGGGTCAGG 58.843 55.000 0.00 0.00 0.00 3.86
196 197 1.534729 GCTACACAAAAGGGTCAGGG 58.465 55.000 0.00 0.00 0.00 4.45
197 198 1.886655 GCTACACAAAAGGGTCAGGGG 60.887 57.143 0.00 0.00 0.00 4.79
198 199 1.702957 CTACACAAAAGGGTCAGGGGA 59.297 52.381 0.00 0.00 0.00 4.81
199 200 0.478507 ACACAAAAGGGTCAGGGGAG 59.521 55.000 0.00 0.00 0.00 4.30
200 201 0.478507 CACAAAAGGGTCAGGGGAGT 59.521 55.000 0.00 0.00 0.00 3.85
201 202 0.478507 ACAAAAGGGTCAGGGGAGTG 59.521 55.000 0.00 0.00 0.00 3.51
202 203 0.771127 CAAAAGGGTCAGGGGAGTGA 59.229 55.000 0.00 0.00 0.00 3.41
203 204 1.144913 CAAAAGGGTCAGGGGAGTGAA 59.855 52.381 0.00 0.00 0.00 3.18
204 205 1.529744 AAAGGGTCAGGGGAGTGAAA 58.470 50.000 0.00 0.00 0.00 2.69
205 206 1.760405 AAGGGTCAGGGGAGTGAAAT 58.240 50.000 0.00 0.00 0.00 2.17
206 207 2.661176 AGGGTCAGGGGAGTGAAATA 57.339 50.000 0.00 0.00 0.00 1.40
207 208 2.482494 AGGGTCAGGGGAGTGAAATAG 58.518 52.381 0.00 0.00 0.00 1.73
208 209 2.197465 GGGTCAGGGGAGTGAAATAGT 58.803 52.381 0.00 0.00 0.00 2.12
209 210 2.576648 GGGTCAGGGGAGTGAAATAGTT 59.423 50.000 0.00 0.00 0.00 2.24
210 211 3.010250 GGGTCAGGGGAGTGAAATAGTTT 59.990 47.826 0.00 0.00 0.00 2.66
211 212 4.262617 GGTCAGGGGAGTGAAATAGTTTC 58.737 47.826 0.00 0.00 40.08 2.78
212 213 3.933332 GTCAGGGGAGTGAAATAGTTTCG 59.067 47.826 0.00 0.00 42.55 3.46
219 220 3.471495 GTGAAATAGTTTCGCACCCAG 57.529 47.619 10.21 0.00 46.56 4.45
220 221 2.812011 GTGAAATAGTTTCGCACCCAGT 59.188 45.455 10.21 0.00 46.56 4.00
221 222 3.252458 GTGAAATAGTTTCGCACCCAGTT 59.748 43.478 10.21 0.00 46.56 3.16
222 223 3.500680 TGAAATAGTTTCGCACCCAGTTC 59.499 43.478 0.00 0.00 42.55 3.01
223 224 2.851263 ATAGTTTCGCACCCAGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
224 225 2.851263 TAGTTTCGCACCCAGTTCAT 57.149 45.000 0.00 0.00 0.00 2.57
225 226 1.981256 AGTTTCGCACCCAGTTCATT 58.019 45.000 0.00 0.00 0.00 2.57
226 227 1.880027 AGTTTCGCACCCAGTTCATTC 59.120 47.619 0.00 0.00 0.00 2.67
227 228 1.880027 GTTTCGCACCCAGTTCATTCT 59.120 47.619 0.00 0.00 0.00 2.40
228 229 1.522668 TTCGCACCCAGTTCATTCTG 58.477 50.000 0.00 0.00 35.45 3.02
229 230 0.396435 TCGCACCCAGTTCATTCTGT 59.604 50.000 0.00 0.00 34.02 3.41
230 231 0.518636 CGCACCCAGTTCATTCTGTG 59.481 55.000 0.00 0.00 34.02 3.66
231 232 1.877680 CGCACCCAGTTCATTCTGTGA 60.878 52.381 0.00 0.00 34.02 3.58
232 233 2.229792 GCACCCAGTTCATTCTGTGAA 58.770 47.619 0.00 0.00 44.36 3.18
244 245 6.182039 TCATTCTGTGAAATGATTTCGTCC 57.818 37.500 12.72 4.65 39.98 4.79
245 246 5.123820 TCATTCTGTGAAATGATTTCGTCCC 59.876 40.000 12.72 2.46 39.98 4.46
246 247 3.000041 TCTGTGAAATGATTTCGTCCCG 59.000 45.455 12.72 1.49 42.55 5.14
247 248 3.000041 CTGTGAAATGATTTCGTCCCGA 59.000 45.455 12.72 0.00 42.55 5.14
248 249 3.000041 TGTGAAATGATTTCGTCCCGAG 59.000 45.455 12.72 0.00 42.55 4.63
249 250 2.351726 GTGAAATGATTTCGTCCCGAGG 59.648 50.000 12.72 0.00 42.55 4.63
250 251 2.027561 TGAAATGATTTCGTCCCGAGGT 60.028 45.455 12.72 0.00 42.55 3.85
251 252 2.311124 AATGATTTCGTCCCGAGGTC 57.689 50.000 0.00 0.00 37.14 3.85
252 253 1.191535 ATGATTTCGTCCCGAGGTCA 58.808 50.000 5.81 5.81 37.14 4.02
253 254 0.970640 TGATTTCGTCCCGAGGTCAA 59.029 50.000 0.00 0.00 37.14 3.18
254 255 1.345089 TGATTTCGTCCCGAGGTCAAA 59.655 47.619 0.00 0.00 37.14 2.69
255 256 2.224329 TGATTTCGTCCCGAGGTCAAAA 60.224 45.455 0.00 0.00 37.14 2.44
256 257 2.554370 TTTCGTCCCGAGGTCAAAAT 57.446 45.000 0.00 0.00 37.14 1.82
257 258 2.554370 TTCGTCCCGAGGTCAAAATT 57.446 45.000 0.00 0.00 37.14 1.82
258 259 1.803334 TCGTCCCGAGGTCAAAATTG 58.197 50.000 0.00 0.00 0.00 2.32
259 260 1.071071 TCGTCCCGAGGTCAAAATTGT 59.929 47.619 0.00 0.00 0.00 2.71
260 261 1.463444 CGTCCCGAGGTCAAAATTGTC 59.537 52.381 0.00 0.00 0.00 3.18
261 262 2.500229 GTCCCGAGGTCAAAATTGTCA 58.500 47.619 0.00 0.00 0.00 3.58
262 263 2.882137 GTCCCGAGGTCAAAATTGTCAA 59.118 45.455 0.00 0.00 0.00 3.18
263 264 3.316868 GTCCCGAGGTCAAAATTGTCAAA 59.683 43.478 0.00 0.00 0.00 2.69
264 265 4.022329 GTCCCGAGGTCAAAATTGTCAAAT 60.022 41.667 0.00 0.00 0.00 2.32
265 266 4.586841 TCCCGAGGTCAAAATTGTCAAATT 59.413 37.500 0.00 0.00 37.61 1.82
266 267 5.069781 TCCCGAGGTCAAAATTGTCAAATTT 59.930 36.000 0.00 0.00 45.81 1.82
267 268 5.177327 CCCGAGGTCAAAATTGTCAAATTTG 59.823 40.000 16.75 16.75 43.63 2.32
268 269 5.333263 CCGAGGTCAAAATTGTCAAATTTGC 60.333 40.000 17.69 13.41 43.63 3.68
269 270 5.333263 CGAGGTCAAAATTGTCAAATTTGCC 60.333 40.000 17.69 19.32 43.63 4.52
326 327 0.112801 GGTAGGAGGCCGGATCTACT 59.887 60.000 5.05 10.69 34.27 2.57
359 360 2.359354 CGATGTTCCGGTGGGCAA 60.359 61.111 0.00 0.00 0.00 4.52
362 363 3.505790 ATGTTCCGGTGGGCAAGCA 62.506 57.895 0.00 0.00 0.00 3.91
414 423 2.427410 GCGGCTGCGTTTTCACAG 60.427 61.111 0.00 0.00 36.96 3.66
514 528 5.443283 TCTACATCGTGTATTGGAGGTACT 58.557 41.667 0.00 0.00 34.40 2.73
641 3773 6.034044 CGCTCTGACTAATTAAGAACACACTC 59.966 42.308 0.00 0.00 0.00 3.51
733 3865 5.410924 GCAAAATGTCCAGGTTAAGGAATC 58.589 41.667 0.00 0.00 36.80 2.52
746 3878 7.829211 CAGGTTAAGGAATCATAAAGGAGAACA 59.171 37.037 0.00 0.00 0.00 3.18
807 3939 3.133362 CACATGCATAAAGCCCTTTCCAT 59.867 43.478 0.00 0.00 44.83 3.41
994 4126 2.491675 TTCCTCTCTGAGACGTAGCA 57.508 50.000 2.58 0.00 0.00 3.49
1060 4192 2.155279 CGAGGAAGATGGAGATCGCTA 58.845 52.381 0.00 0.00 33.34 4.26
1105 4237 2.548127 GATTGCCTCCAAAGCCGCAC 62.548 60.000 0.00 0.00 34.05 5.34
1475 4607 3.429141 CCAGCAACAGCGCCAGAG 61.429 66.667 2.29 0.00 0.00 3.35
1983 6145 3.624326 TGGACAGTTTCATTTTCTGCG 57.376 42.857 0.00 0.00 33.12 5.18
2099 6261 3.439857 AGAAGCCAATTAACTCCAGCA 57.560 42.857 0.00 0.00 0.00 4.41
2138 6300 7.933396 TGAATTAACACGTATAGCTAGCTACA 58.067 34.615 26.41 13.28 0.00 2.74
2199 6361 8.842280 TGGTATTTTCGAGTTATCAAACTGTTT 58.158 29.630 0.00 0.00 46.09 2.83
2215 6377 9.176181 TCAAACTGTTTCGCAAGTAATTATTTC 57.824 29.630 2.13 0.00 39.48 2.17
2405 6680 5.253330 TCTTCTCCATAATTTGTCCCACAC 58.747 41.667 0.00 0.00 0.00 3.82
2498 6773 5.010314 TGCTCATTTCATGAAAGCAAGAACT 59.990 36.000 24.29 5.95 37.47 3.01
2550 6825 0.326264 GGCCTCCTAGGTATGCATGG 59.674 60.000 10.16 0.89 37.80 3.66
2553 6828 0.987294 CTCCTAGGTATGCATGGGGG 59.013 60.000 10.16 4.69 0.00 5.40
2759 7646 2.254546 AAGCATCCAAGTCGTTCACA 57.745 45.000 0.00 0.00 0.00 3.58
2817 7908 1.227823 TGAGGCAAGTTGACCACCG 60.228 57.895 4.68 0.00 0.00 4.94
2853 7944 8.711457 CAATATTTTGAACAAAACACCCTGATC 58.289 33.333 13.64 0.00 42.32 2.92
2857 7948 5.930837 TGAACAAAACACCCTGATCTTTT 57.069 34.783 0.00 0.00 0.00 2.27
2861 7952 4.202151 ACAAAACACCCTGATCTTTTGCTC 60.202 41.667 12.84 0.00 37.18 4.26
2866 7957 3.439476 CACCCTGATCTTTTGCTCTTCTG 59.561 47.826 0.00 0.00 0.00 3.02
2871 7962 6.323266 CCTGATCTTTTGCTCTTCTGATTTG 58.677 40.000 0.00 0.00 0.00 2.32
2895 8011 2.173569 GGCCTCTCTCTCTCTCTCTCTT 59.826 54.545 0.00 0.00 0.00 2.85
2896 8012 3.471680 GCCTCTCTCTCTCTCTCTCTTC 58.528 54.545 0.00 0.00 0.00 2.87
2897 8013 3.135530 GCCTCTCTCTCTCTCTCTCTTCT 59.864 52.174 0.00 0.00 0.00 2.85
2898 8014 4.742138 GCCTCTCTCTCTCTCTCTCTTCTC 60.742 54.167 0.00 0.00 0.00 2.87
2900 8016 4.361783 TCTCTCTCTCTCTCTCTTCTCCA 58.638 47.826 0.00 0.00 0.00 3.86
2901 8017 4.782691 TCTCTCTCTCTCTCTCTTCTCCAA 59.217 45.833 0.00 0.00 0.00 3.53
2902 8018 4.843728 TCTCTCTCTCTCTCTTCTCCAAC 58.156 47.826 0.00 0.00 0.00 3.77
2903 8019 4.536090 TCTCTCTCTCTCTCTTCTCCAACT 59.464 45.833 0.00 0.00 0.00 3.16
2904 8020 4.588899 TCTCTCTCTCTCTTCTCCAACTG 58.411 47.826 0.00 0.00 0.00 3.16
2907 8023 3.088532 TCTCTCTCTTCTCCAACTGCTC 58.911 50.000 0.00 0.00 0.00 4.26
2908 8024 3.091545 CTCTCTCTTCTCCAACTGCTCT 58.908 50.000 0.00 0.00 0.00 4.09
2909 8025 3.088532 TCTCTCTTCTCCAACTGCTCTC 58.911 50.000 0.00 0.00 0.00 3.20
2910 8026 3.091545 CTCTCTTCTCCAACTGCTCTCT 58.908 50.000 0.00 0.00 0.00 3.10
2911 8027 3.088532 TCTCTTCTCCAACTGCTCTCTC 58.911 50.000 0.00 0.00 0.00 3.20
2912 8028 2.824936 CTCTTCTCCAACTGCTCTCTCA 59.175 50.000 0.00 0.00 0.00 3.27
2913 8029 3.234353 TCTTCTCCAACTGCTCTCTCAA 58.766 45.455 0.00 0.00 0.00 3.02
2914 8030 3.643320 TCTTCTCCAACTGCTCTCTCAAA 59.357 43.478 0.00 0.00 0.00 2.69
2915 8031 3.393089 TCTCCAACTGCTCTCTCAAAC 57.607 47.619 0.00 0.00 0.00 2.93
2916 8032 2.037772 TCTCCAACTGCTCTCTCAAACC 59.962 50.000 0.00 0.00 0.00 3.27
2917 8033 1.072331 TCCAACTGCTCTCTCAAACCC 59.928 52.381 0.00 0.00 0.00 4.11
2918 8034 1.202806 CCAACTGCTCTCTCAAACCCA 60.203 52.381 0.00 0.00 0.00 4.51
2919 8035 1.876156 CAACTGCTCTCTCAAACCCAC 59.124 52.381 0.00 0.00 0.00 4.61
3106 8227 5.107109 TCATTCATACACACAAGCACAAC 57.893 39.130 0.00 0.00 0.00 3.32
3186 8307 2.396157 CGGGCCCGTTTAAGCAGAC 61.396 63.158 36.64 0.00 34.35 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.953559 CTAGGCGCCACACATGTAAT 58.046 50.000 31.54 5.89 0.00 1.89
10 11 0.742990 GCTAGGCGCCACACATGTAA 60.743 55.000 31.54 0.72 0.00 2.41
11 12 1.153449 GCTAGGCGCCACACATGTA 60.153 57.895 31.54 9.35 0.00 2.29
12 13 2.436646 GCTAGGCGCCACACATGT 60.437 61.111 31.54 8.51 0.00 3.21
32 33 1.328680 CATGTAAAGTGCAGCGCCTAG 59.671 52.381 2.29 0.00 0.00 3.02
33 34 1.338674 ACATGTAAAGTGCAGCGCCTA 60.339 47.619 2.29 0.00 0.00 3.93
34 35 0.606401 ACATGTAAAGTGCAGCGCCT 60.606 50.000 2.29 0.00 0.00 5.52
35 36 0.454957 CACATGTAAAGTGCAGCGCC 60.455 55.000 2.29 0.00 0.00 6.53
36 37 0.238289 ACACATGTAAAGTGCAGCGC 59.762 50.000 0.00 0.00 40.59 5.92
37 38 1.400113 CCACACATGTAAAGTGCAGCG 60.400 52.381 8.85 0.00 40.59 5.18
38 39 1.666888 GCCACACATGTAAAGTGCAGC 60.667 52.381 8.85 5.19 40.59 5.25
39 40 1.400113 CGCCACACATGTAAAGTGCAG 60.400 52.381 8.85 2.54 40.59 4.41
40 41 0.590682 CGCCACACATGTAAAGTGCA 59.409 50.000 8.85 0.00 40.59 4.57
41 42 0.729140 GCGCCACACATGTAAAGTGC 60.729 55.000 8.85 9.41 40.59 4.40
42 43 0.109781 GGCGCCACACATGTAAAGTG 60.110 55.000 24.80 2.61 42.56 3.16
43 44 0.250727 AGGCGCCACACATGTAAAGT 60.251 50.000 31.54 0.00 0.00 2.66
44 45 1.665679 CTAGGCGCCACACATGTAAAG 59.334 52.381 31.54 5.66 0.00 1.85
45 46 1.732941 CTAGGCGCCACACATGTAAA 58.267 50.000 31.54 0.00 0.00 2.01
46 47 0.742990 GCTAGGCGCCACACATGTAA 60.743 55.000 31.54 0.72 0.00 2.41
47 48 1.153449 GCTAGGCGCCACACATGTA 60.153 57.895 31.54 9.35 0.00 2.29
48 49 2.436646 GCTAGGCGCCACACATGT 60.437 61.111 31.54 8.51 0.00 3.21
49 50 2.124983 AGCTAGGCGCCACACATG 60.125 61.111 31.54 12.28 40.39 3.21
50 51 2.187946 GAGCTAGGCGCCACACAT 59.812 61.111 31.54 10.27 40.39 3.21
51 52 4.435436 CGAGCTAGGCGCCACACA 62.435 66.667 31.54 9.67 40.39 3.72
54 55 4.577246 CTCCGAGCTAGGCGCCAC 62.577 72.222 31.54 17.93 40.39 5.01
60 61 4.277593 CAGCGCCTCCGAGCTAGG 62.278 72.222 6.52 6.52 44.07 3.02
61 62 4.940593 GCAGCGCCTCCGAGCTAG 62.941 72.222 2.29 0.00 44.07 3.42
95 96 4.096003 CACCGTGGTAGCCCCTGG 62.096 72.222 0.00 0.00 36.03 4.45
96 97 4.096003 CCACCGTGGTAGCCCCTG 62.096 72.222 9.64 0.00 31.35 4.45
97 98 4.326227 TCCACCGTGGTAGCCCCT 62.326 66.667 17.32 0.00 39.03 4.79
98 99 4.091939 GTCCACCGTGGTAGCCCC 62.092 72.222 17.32 0.00 39.03 5.80
99 100 3.310860 CTGTCCACCGTGGTAGCCC 62.311 68.421 17.32 2.86 39.03 5.19
100 101 2.264794 CTGTCCACCGTGGTAGCC 59.735 66.667 17.32 5.14 39.03 3.93
101 102 2.227089 CTCCTGTCCACCGTGGTAGC 62.227 65.000 17.32 9.48 39.03 3.58
102 103 0.898789 ACTCCTGTCCACCGTGGTAG 60.899 60.000 17.32 15.41 39.03 3.18
103 104 1.154454 ACTCCTGTCCACCGTGGTA 59.846 57.895 17.32 7.20 39.03 3.25
104 105 2.122989 ACTCCTGTCCACCGTGGT 60.123 61.111 17.32 0.00 39.03 4.16
105 106 2.343758 CACTCCTGTCCACCGTGG 59.656 66.667 11.73 11.73 39.43 4.94
106 107 2.357517 GCACTCCTGTCCACCGTG 60.358 66.667 0.00 0.00 0.00 4.94
107 108 2.439960 TTGCACTCCTGTCCACCGT 61.440 57.895 0.00 0.00 0.00 4.83
108 109 1.961277 GTTGCACTCCTGTCCACCG 60.961 63.158 0.00 0.00 0.00 4.94
109 110 1.961277 CGTTGCACTCCTGTCCACC 60.961 63.158 0.00 0.00 0.00 4.61
110 111 2.607892 GCGTTGCACTCCTGTCCAC 61.608 63.158 0.00 0.00 0.00 4.02
111 112 2.280797 GCGTTGCACTCCTGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
112 113 3.050275 GGCGTTGCACTCCTGTCC 61.050 66.667 0.00 0.00 0.00 4.02
113 114 3.414700 CGGCGTTGCACTCCTGTC 61.415 66.667 0.00 0.00 0.00 3.51
136 137 1.227089 CCTACTGTGCAGCGCCTAG 60.227 63.158 2.29 2.36 0.00 3.02
137 138 2.721167 CCCTACTGTGCAGCGCCTA 61.721 63.158 2.29 0.00 0.00 3.93
138 139 4.087892 CCCTACTGTGCAGCGCCT 62.088 66.667 2.29 0.00 0.00 5.52
139 140 4.394712 ACCCTACTGTGCAGCGCC 62.395 66.667 2.29 0.00 0.00 6.53
140 141 3.121030 CACCCTACTGTGCAGCGC 61.121 66.667 0.00 0.00 0.00 5.92
141 142 2.029288 CACACCCTACTGTGCAGCG 61.029 63.158 0.00 0.00 39.93 5.18
142 143 1.672356 CCACACCCTACTGTGCAGC 60.672 63.158 0.00 0.00 40.33 5.25
143 144 1.672356 GCCACACCCTACTGTGCAG 60.672 63.158 0.00 0.00 40.33 4.41
144 145 2.429930 GCCACACCCTACTGTGCA 59.570 61.111 0.00 0.00 40.33 4.57
145 146 2.742372 CGCCACACCCTACTGTGC 60.742 66.667 0.00 0.00 40.33 4.57
146 147 2.742372 GCGCCACACCCTACTGTG 60.742 66.667 0.00 0.00 41.19 3.66
147 148 4.016706 GGCGCCACACCCTACTGT 62.017 66.667 24.80 0.00 0.00 3.55
169 170 4.627801 TTTGTGTAGCGCCCGCCA 62.628 61.111 2.29 0.00 43.17 5.69
170 171 3.322706 CTTTTGTGTAGCGCCCGCC 62.323 63.158 2.29 0.00 43.17 6.13
171 172 2.175811 CTTTTGTGTAGCGCCCGC 59.824 61.111 2.29 4.20 42.33 6.13
172 173 2.686816 CCCTTTTGTGTAGCGCCCG 61.687 63.158 2.29 0.00 0.00 6.13
173 174 1.583495 GACCCTTTTGTGTAGCGCCC 61.583 60.000 2.29 0.00 0.00 6.13
174 175 0.887387 TGACCCTTTTGTGTAGCGCC 60.887 55.000 2.29 0.00 0.00 6.53
175 176 0.517316 CTGACCCTTTTGTGTAGCGC 59.483 55.000 0.00 0.00 0.00 5.92
176 177 1.156736 CCTGACCCTTTTGTGTAGCG 58.843 55.000 0.00 0.00 0.00 4.26
177 178 1.534729 CCCTGACCCTTTTGTGTAGC 58.465 55.000 0.00 0.00 0.00 3.58
178 179 1.702957 TCCCCTGACCCTTTTGTGTAG 59.297 52.381 0.00 0.00 0.00 2.74
179 180 1.702957 CTCCCCTGACCCTTTTGTGTA 59.297 52.381 0.00 0.00 0.00 2.90
180 181 0.478507 CTCCCCTGACCCTTTTGTGT 59.521 55.000 0.00 0.00 0.00 3.72
181 182 0.478507 ACTCCCCTGACCCTTTTGTG 59.521 55.000 0.00 0.00 0.00 3.33
182 183 0.478507 CACTCCCCTGACCCTTTTGT 59.521 55.000 0.00 0.00 0.00 2.83
183 184 0.771127 TCACTCCCCTGACCCTTTTG 59.229 55.000 0.00 0.00 0.00 2.44
184 185 1.529744 TTCACTCCCCTGACCCTTTT 58.470 50.000 0.00 0.00 0.00 2.27
185 186 1.529744 TTTCACTCCCCTGACCCTTT 58.470 50.000 0.00 0.00 0.00 3.11
186 187 1.760405 ATTTCACTCCCCTGACCCTT 58.240 50.000 0.00 0.00 0.00 3.95
187 188 2.225908 ACTATTTCACTCCCCTGACCCT 60.226 50.000 0.00 0.00 0.00 4.34
188 189 2.197465 ACTATTTCACTCCCCTGACCC 58.803 52.381 0.00 0.00 0.00 4.46
189 190 4.262617 GAAACTATTTCACTCCCCTGACC 58.737 47.826 0.00 0.00 39.45 4.02
190 191 3.933332 CGAAACTATTTCACTCCCCTGAC 59.067 47.826 2.50 0.00 39.63 3.51
191 192 3.618997 GCGAAACTATTTCACTCCCCTGA 60.619 47.826 2.50 0.00 39.63 3.86
192 193 2.678336 GCGAAACTATTTCACTCCCCTG 59.322 50.000 2.50 0.00 39.63 4.45
193 194 2.304761 TGCGAAACTATTTCACTCCCCT 59.695 45.455 2.50 0.00 39.63 4.79
194 195 2.418976 GTGCGAAACTATTTCACTCCCC 59.581 50.000 2.50 0.00 39.63 4.81
195 196 2.418976 GGTGCGAAACTATTTCACTCCC 59.581 50.000 2.50 0.00 39.63 4.30
196 197 2.418976 GGGTGCGAAACTATTTCACTCC 59.581 50.000 2.50 2.81 39.63 3.85
197 198 3.071479 TGGGTGCGAAACTATTTCACTC 58.929 45.455 2.50 0.00 39.63 3.51
198 199 3.074412 CTGGGTGCGAAACTATTTCACT 58.926 45.455 2.50 0.00 39.63 3.41
199 200 2.812011 ACTGGGTGCGAAACTATTTCAC 59.188 45.455 2.50 0.00 39.63 3.18
200 201 3.134574 ACTGGGTGCGAAACTATTTCA 57.865 42.857 2.50 0.00 39.63 2.69
201 202 3.500680 TGAACTGGGTGCGAAACTATTTC 59.499 43.478 0.00 0.00 36.32 2.17
202 203 3.482436 TGAACTGGGTGCGAAACTATTT 58.518 40.909 0.00 0.00 0.00 1.40
203 204 3.134574 TGAACTGGGTGCGAAACTATT 57.865 42.857 0.00 0.00 0.00 1.73
204 205 2.851263 TGAACTGGGTGCGAAACTAT 57.149 45.000 0.00 0.00 0.00 2.12
205 206 2.851263 ATGAACTGGGTGCGAAACTA 57.149 45.000 0.00 0.00 0.00 2.24
206 207 1.880027 GAATGAACTGGGTGCGAAACT 59.120 47.619 0.00 0.00 0.00 2.66
207 208 1.880027 AGAATGAACTGGGTGCGAAAC 59.120 47.619 0.00 0.00 0.00 2.78
208 209 1.879380 CAGAATGAACTGGGTGCGAAA 59.121 47.619 0.00 0.00 39.69 3.46
209 210 1.202758 ACAGAATGAACTGGGTGCGAA 60.203 47.619 0.00 0.00 39.69 4.70
210 211 0.396435 ACAGAATGAACTGGGTGCGA 59.604 50.000 0.00 0.00 39.69 5.10
211 212 0.518636 CACAGAATGAACTGGGTGCG 59.481 55.000 0.00 0.00 39.69 5.34
212 213 1.896220 TCACAGAATGAACTGGGTGC 58.104 50.000 0.00 0.00 41.49 5.01
220 221 6.349280 GGGACGAAATCATTTCACAGAATGAA 60.349 38.462 10.76 0.00 45.96 2.57
221 222 5.123820 GGGACGAAATCATTTCACAGAATGA 59.876 40.000 10.76 3.12 46.64 2.57
222 223 5.335127 GGGACGAAATCATTTCACAGAATG 58.665 41.667 10.76 0.00 39.63 2.67
223 224 5.567138 GGGACGAAATCATTTCACAGAAT 57.433 39.130 10.76 0.00 39.63 2.40
241 242 2.500229 TGACAATTTTGACCTCGGGAC 58.500 47.619 0.00 0.00 0.00 4.46
242 243 2.940994 TGACAATTTTGACCTCGGGA 57.059 45.000 0.00 0.00 0.00 5.14
243 244 4.519540 ATTTGACAATTTTGACCTCGGG 57.480 40.909 0.00 0.00 0.00 5.14
244 245 5.333263 GCAAATTTGACAATTTTGACCTCGG 60.333 40.000 27.56 9.61 40.09 4.63
245 246 5.333263 GGCAAATTTGACAATTTTGACCTCG 60.333 40.000 27.56 10.13 40.09 4.63
246 247 5.049474 GGGCAAATTTGACAATTTTGACCTC 60.049 40.000 33.72 22.32 40.09 3.85
247 248 4.821260 GGGCAAATTTGACAATTTTGACCT 59.179 37.500 33.72 5.89 40.09 3.85
248 249 4.821260 AGGGCAAATTTGACAATTTTGACC 59.179 37.500 33.90 33.90 40.09 4.02
249 250 6.375945 AAGGGCAAATTTGACAATTTTGAC 57.624 33.333 27.56 25.82 40.09 3.18
250 251 6.238320 CGAAAGGGCAAATTTGACAATTTTGA 60.238 34.615 27.56 0.07 40.09 2.69
251 252 5.908499 CGAAAGGGCAAATTTGACAATTTTG 59.092 36.000 25.05 21.51 40.09 2.44
252 253 5.819901 TCGAAAGGGCAAATTTGACAATTTT 59.180 32.000 25.05 19.76 40.09 1.82
253 254 5.363939 TCGAAAGGGCAAATTTGACAATTT 58.636 33.333 25.05 22.42 42.37 1.82
254 255 4.954875 TCGAAAGGGCAAATTTGACAATT 58.045 34.783 25.05 18.03 38.18 2.32
255 256 4.559153 CTCGAAAGGGCAAATTTGACAAT 58.441 39.130 25.05 10.59 38.18 2.71
256 257 3.243704 CCTCGAAAGGGCAAATTTGACAA 60.244 43.478 25.05 2.84 38.18 3.18
257 258 2.295909 CCTCGAAAGGGCAAATTTGACA 59.704 45.455 25.05 2.84 38.18 3.58
258 259 2.926586 GCCTCGAAAGGGCAAATTTGAC 60.927 50.000 22.31 19.34 43.58 3.18
259 260 1.272212 GCCTCGAAAGGGCAAATTTGA 59.728 47.619 22.31 0.00 43.58 2.69
260 261 1.713597 GCCTCGAAAGGGCAAATTTG 58.286 50.000 14.03 14.03 43.58 2.32
261 262 0.243636 CGCCTCGAAAGGGCAAATTT 59.756 50.000 13.90 0.00 44.48 1.82
262 263 0.893727 ACGCCTCGAAAGGGCAAATT 60.894 50.000 13.90 0.00 44.48 1.82
263 264 1.303317 ACGCCTCGAAAGGGCAAAT 60.303 52.632 13.90 0.00 44.48 2.32
264 265 2.112297 ACGCCTCGAAAGGGCAAA 59.888 55.556 13.90 0.00 44.48 3.68
265 266 2.668212 CACGCCTCGAAAGGGCAA 60.668 61.111 13.90 0.00 44.48 4.52
266 267 4.697756 CCACGCCTCGAAAGGGCA 62.698 66.667 13.90 0.00 44.48 5.36
268 269 4.016706 ACCCACGCCTCGAAAGGG 62.017 66.667 11.99 11.99 43.58 3.95
269 270 2.742372 CACCCACGCCTCGAAAGG 60.742 66.667 0.00 0.00 46.44 3.11
305 306 1.365894 TAGATCCGGCCTCCTACCCA 61.366 60.000 0.00 0.00 0.00 4.51
326 327 2.736579 ATCGCTGCACCTTGCTGTCA 62.737 55.000 0.00 0.00 45.31 3.58
354 355 4.446413 GCACCATGCTGCTTGCCC 62.446 66.667 5.72 0.00 40.96 5.36
362 363 4.790962 CTCCTGCCGCACCATGCT 62.791 66.667 0.00 0.00 42.25 3.79
413 422 2.113860 AACATACATCACTTGGCGCT 57.886 45.000 7.64 0.00 0.00 5.92
414 423 2.518949 CAAACATACATCACTTGGCGC 58.481 47.619 0.00 0.00 0.00 6.53
415 424 2.095314 TGCAAACATACATCACTTGGCG 60.095 45.455 0.00 0.00 0.00 5.69
733 3865 2.932614 CCAGTCGCTGTTCTCCTTTATG 59.067 50.000 6.19 0.00 0.00 1.90
746 3878 0.250338 GTTTCTCCCAACCAGTCGCT 60.250 55.000 0.00 0.00 0.00 4.93
807 3939 6.038603 GGTCTATTGTTGCAGCATTCTAATCA 59.961 38.462 3.36 0.00 0.00 2.57
994 4126 8.177119 ACAATGCCGGTAATTAATATCACAAT 57.823 30.769 1.90 0.00 0.00 2.71
1060 4192 2.246719 GCCAGAATAAGAGCGATGGT 57.753 50.000 0.00 0.00 0.00 3.55
1242 4374 1.026182 TGCCATCGAGAACCATGCAC 61.026 55.000 0.00 0.00 0.00 4.57
1475 4607 3.075641 GTCTCCTCCGGTGGGTCC 61.076 72.222 22.07 6.61 33.83 4.46
1582 4724 7.761409 TGATCTTGCATTTTGTACAGGATAAC 58.239 34.615 0.00 0.00 31.13 1.89
1585 4727 6.839124 TTGATCTTGCATTTTGTACAGGAT 57.161 33.333 0.00 0.00 33.37 3.24
1753 4911 3.951037 AGACTACTGCTGATCTCATCGTT 59.049 43.478 0.00 0.00 0.00 3.85
2099 6261 7.148255 ACGTGTTAATTCATGTTATGCACATCT 60.148 33.333 0.00 0.00 43.17 2.90
2199 6361 6.148150 ACGAAACCTGAAATAATTACTTGCGA 59.852 34.615 0.00 0.00 0.00 5.10
2215 6377 3.958704 TGTTATGCACAAACGAAACCTG 58.041 40.909 8.72 0.00 29.87 4.00
2405 6680 1.714794 ACTTCAATTCTGCGTCTCCG 58.285 50.000 0.00 0.00 37.07 4.63
2550 6825 1.276989 TGTTTCACCGTATCTGTCCCC 59.723 52.381 0.00 0.00 0.00 4.81
2553 6828 4.312443 TCCTTTGTTTCACCGTATCTGTC 58.688 43.478 0.00 0.00 0.00 3.51
2759 7646 0.690411 AGAGCTGCATAGGACCTGCT 60.690 55.000 3.53 3.24 40.34 4.24
2853 7944 4.553323 CCACCAAATCAGAAGAGCAAAAG 58.447 43.478 0.00 0.00 0.00 2.27
2857 7948 1.538047 GCCACCAAATCAGAAGAGCA 58.462 50.000 0.00 0.00 0.00 4.26
2861 7952 2.026449 AGAGAGGCCACCAAATCAGAAG 60.026 50.000 5.01 0.00 0.00 2.85
2866 7957 1.836802 AGAGAGAGAGGCCACCAAATC 59.163 52.381 5.01 0.00 0.00 2.17
2871 7962 0.258774 AGAGAGAGAGAGAGGCCACC 59.741 60.000 5.01 0.00 0.00 4.61
2895 8011 2.037772 GGTTTGAGAGAGCAGTTGGAGA 59.962 50.000 0.00 0.00 0.00 3.71
2896 8012 2.421619 GGTTTGAGAGAGCAGTTGGAG 58.578 52.381 0.00 0.00 0.00 3.86
2897 8013 1.072331 GGGTTTGAGAGAGCAGTTGGA 59.928 52.381 0.00 0.00 0.00 3.53
2898 8014 1.202806 TGGGTTTGAGAGAGCAGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
2900 8016 1.771255 AGTGGGTTTGAGAGAGCAGTT 59.229 47.619 0.00 0.00 0.00 3.16
2901 8017 1.346068 GAGTGGGTTTGAGAGAGCAGT 59.654 52.381 0.00 0.00 0.00 4.40
2902 8018 1.345741 TGAGTGGGTTTGAGAGAGCAG 59.654 52.381 0.00 0.00 0.00 4.24
2903 8019 1.070758 GTGAGTGGGTTTGAGAGAGCA 59.929 52.381 0.00 0.00 0.00 4.26
2904 8020 1.070758 TGTGAGTGGGTTTGAGAGAGC 59.929 52.381 0.00 0.00 0.00 4.09
2907 8023 3.070018 GTGATGTGAGTGGGTTTGAGAG 58.930 50.000 0.00 0.00 0.00 3.20
2908 8024 2.437651 TGTGATGTGAGTGGGTTTGAGA 59.562 45.455 0.00 0.00 0.00 3.27
2909 8025 2.849942 TGTGATGTGAGTGGGTTTGAG 58.150 47.619 0.00 0.00 0.00 3.02
2910 8026 3.411446 GATGTGATGTGAGTGGGTTTGA 58.589 45.455 0.00 0.00 0.00 2.69
2911 8027 2.489329 GGATGTGATGTGAGTGGGTTTG 59.511 50.000 0.00 0.00 0.00 2.93
2912 8028 2.555227 GGGATGTGATGTGAGTGGGTTT 60.555 50.000 0.00 0.00 0.00 3.27
2913 8029 1.004745 GGGATGTGATGTGAGTGGGTT 59.995 52.381 0.00 0.00 0.00 4.11
2914 8030 0.620556 GGGATGTGATGTGAGTGGGT 59.379 55.000 0.00 0.00 0.00 4.51
2915 8031 0.620030 TGGGATGTGATGTGAGTGGG 59.380 55.000 0.00 0.00 0.00 4.61
2916 8032 1.280133 ACTGGGATGTGATGTGAGTGG 59.720 52.381 0.00 0.00 0.00 4.00
2917 8033 2.027837 TGACTGGGATGTGATGTGAGTG 60.028 50.000 0.00 0.00 0.00 3.51
2918 8034 2.235650 CTGACTGGGATGTGATGTGAGT 59.764 50.000 0.00 0.00 0.00 3.41
2919 8035 2.902523 CTGACTGGGATGTGATGTGAG 58.097 52.381 0.00 0.00 0.00 3.51
3106 8227 1.153208 GACTCTGCCTGGAGCCATG 60.153 63.158 0.00 0.00 42.71 3.66
3186 8307 3.876274 TTTCTTCTCTCCGTCCATCTG 57.124 47.619 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.