Multiple sequence alignment - TraesCS2D01G244200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G244200 chr2D 100.000 2339 0 0 1 2339 273017913 273020251 0.000000e+00 4320
1 TraesCS2D01G244200 chr2D 90.943 530 46 2 1810 2339 276922227 276921700 0.000000e+00 712
2 TraesCS2D01G244200 chr2D 93.478 368 16 8 1457 1820 119842284 119842647 7.350000e-150 540
3 TraesCS2D01G244200 chr7D 98.385 1362 20 2 1 1362 232924949 232926308 0.000000e+00 2392
4 TraesCS2D01G244200 chr7D 98.238 1362 23 1 1 1362 149106976 149105616 0.000000e+00 2381
5 TraesCS2D01G244200 chr7D 98.238 1362 23 1 1 1362 497912481 497911121 0.000000e+00 2381
6 TraesCS2D01G244200 chr3D 97.799 1363 27 3 1 1362 87390037 87391397 0.000000e+00 2348
7 TraesCS2D01G244200 chr3D 90.377 530 50 1 1810 2339 511411357 511410829 0.000000e+00 695
8 TraesCS2D01G244200 chr5A 97.285 1363 35 2 1 1363 635794531 635793171 0.000000e+00 2311
9 TraesCS2D01G244200 chr5A 89.454 531 54 2 1810 2339 574158706 574159235 0.000000e+00 669
10 TraesCS2D01G244200 chr2A 96.848 1364 38 5 1 1362 742309305 742307945 0.000000e+00 2276
11 TraesCS2D01G244200 chr2A 93.548 372 17 6 1453 1820 19352534 19352166 4.390000e-152 547
12 TraesCS2D01G244200 chr2A 93.923 362 16 5 1463 1820 16572041 16571682 2.040000e-150 542
13 TraesCS2D01G244200 chr2A 96.842 95 1 2 1364 1456 319020209 319020115 8.650000e-35 158
14 TraesCS2D01G244200 chr2A 95.789 95 2 2 1364 1456 319016382 319016288 4.030000e-33 152
15 TraesCS2D01G244200 chr6A 96.329 1362 43 6 2 1362 35542455 35543810 0.000000e+00 2231
16 TraesCS2D01G244200 chr6A 93.846 1365 77 5 1 1362 371337484 371338844 0.000000e+00 2049
17 TraesCS2D01G244200 chr3B 94.040 1359 73 6 1 1358 418735710 418734359 0.000000e+00 2054
18 TraesCS2D01G244200 chr5D 91.555 521 44 0 1819 2339 77437076 77437596 0.000000e+00 719
19 TraesCS2D01G244200 chr6D 90.943 530 44 3 1810 2339 89820241 89819716 0.000000e+00 710
20 TraesCS2D01G244200 chr5B 89.642 531 53 2 1810 2339 42244358 42244887 0.000000e+00 675
21 TraesCS2D01G244200 chr4A 89.454 531 54 2 1810 2339 476949852 476950381 0.000000e+00 669
22 TraesCS2D01G244200 chr4A 93.029 373 20 6 1453 1820 584736131 584736502 7.350000e-150 540
23 TraesCS2D01G244200 chr1B 89.454 531 54 2 1810 2339 12599591 12599062 0.000000e+00 669
24 TraesCS2D01G244200 chr1B 93.225 369 17 8 1455 1820 684678671 684678308 9.510000e-149 536
25 TraesCS2D01G244200 chr2B 89.266 531 54 3 1810 2339 87276922 87277450 0.000000e+00 662
26 TraesCS2D01G244200 chr2B 93.750 368 18 5 1457 1820 68371691 68371325 4.390000e-152 547
27 TraesCS2D01G244200 chrUn 94.054 370 16 6 1455 1820 12530961 12531328 7.300000e-155 556
28 TraesCS2D01G244200 chrUn 93.923 362 16 5 1463 1820 282690415 282690056 2.040000e-150 542
29 TraesCS2D01G244200 chr6B 93.460 367 20 4 1456 1820 452156475 452156111 2.040000e-150 542
30 TraesCS2D01G244200 chr1D 87.356 174 21 1 1189 1361 209742072 209742245 5.100000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G244200 chr2D 273017913 273020251 2338 False 4320 4320 100.000 1 2339 1 chr2D.!!$F2 2338
1 TraesCS2D01G244200 chr2D 276921700 276922227 527 True 712 712 90.943 1810 2339 1 chr2D.!!$R1 529
2 TraesCS2D01G244200 chr7D 232924949 232926308 1359 False 2392 2392 98.385 1 1362 1 chr7D.!!$F1 1361
3 TraesCS2D01G244200 chr7D 149105616 149106976 1360 True 2381 2381 98.238 1 1362 1 chr7D.!!$R1 1361
4 TraesCS2D01G244200 chr7D 497911121 497912481 1360 True 2381 2381 98.238 1 1362 1 chr7D.!!$R2 1361
5 TraesCS2D01G244200 chr3D 87390037 87391397 1360 False 2348 2348 97.799 1 1362 1 chr3D.!!$F1 1361
6 TraesCS2D01G244200 chr3D 511410829 511411357 528 True 695 695 90.377 1810 2339 1 chr3D.!!$R1 529
7 TraesCS2D01G244200 chr5A 635793171 635794531 1360 True 2311 2311 97.285 1 1363 1 chr5A.!!$R1 1362
8 TraesCS2D01G244200 chr5A 574158706 574159235 529 False 669 669 89.454 1810 2339 1 chr5A.!!$F1 529
9 TraesCS2D01G244200 chr2A 742307945 742309305 1360 True 2276 2276 96.848 1 1362 1 chr2A.!!$R3 1361
10 TraesCS2D01G244200 chr6A 35542455 35543810 1355 False 2231 2231 96.329 2 1362 1 chr6A.!!$F1 1360
11 TraesCS2D01G244200 chr6A 371337484 371338844 1360 False 2049 2049 93.846 1 1362 1 chr6A.!!$F2 1361
12 TraesCS2D01G244200 chr3B 418734359 418735710 1351 True 2054 2054 94.040 1 1358 1 chr3B.!!$R1 1357
13 TraesCS2D01G244200 chr5D 77437076 77437596 520 False 719 719 91.555 1819 2339 1 chr5D.!!$F1 520
14 TraesCS2D01G244200 chr6D 89819716 89820241 525 True 710 710 90.943 1810 2339 1 chr6D.!!$R1 529
15 TraesCS2D01G244200 chr5B 42244358 42244887 529 False 675 675 89.642 1810 2339 1 chr5B.!!$F1 529
16 TraesCS2D01G244200 chr4A 476949852 476950381 529 False 669 669 89.454 1810 2339 1 chr4A.!!$F1 529
17 TraesCS2D01G244200 chr1B 12599062 12599591 529 True 669 669 89.454 1810 2339 1 chr1B.!!$R1 529
18 TraesCS2D01G244200 chr2B 87276922 87277450 528 False 662 662 89.266 1810 2339 1 chr2B.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 614 1.063174 GCTTGTGAGATTGATCGTGCC 59.937 52.381 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1617 0.03582 TGCGGGGGATGTTGAGTAAC 60.036 55.0 0.0 0.0 37.32 2.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 2.840651 ACTAGGAAGATTGTGACCCCTG 59.159 50.000 0.00 0.00 0.00 4.45
566 575 3.399983 AGGTTTGGAAAAGGCTAGGGTTA 59.600 43.478 0.00 0.00 0.00 2.85
605 614 1.063174 GCTTGTGAGATTGATCGTGCC 59.937 52.381 0.00 0.00 0.00 5.01
702 711 5.467035 AGAAATGGTAGCTATCTCTGCTC 57.533 43.478 5.42 0.00 41.46 4.26
753 762 7.615582 TTAGTGCATAAGGAATTCACTCAAG 57.384 36.000 7.93 0.00 38.71 3.02
789 799 4.662179 TCTCAATGGGGATCATAGCTCTTT 59.338 41.667 0.00 0.00 34.44 2.52
959 972 5.861727 AGACGACAAAGGTAGGTTTATTGT 58.138 37.500 0.00 0.00 36.96 2.71
1407 1421 8.931385 AATTATCCACAAGTGATTATGTTTGC 57.069 30.769 0.94 0.00 0.00 3.68
1408 1422 5.981088 ATCCACAAGTGATTATGTTTGCA 57.019 34.783 0.94 0.00 0.00 4.08
1409 1423 5.781210 TCCACAAGTGATTATGTTTGCAA 57.219 34.783 0.00 0.00 0.00 4.08
1410 1424 6.343716 TCCACAAGTGATTATGTTTGCAAT 57.656 33.333 0.00 0.00 0.00 3.56
1411 1425 6.757237 TCCACAAGTGATTATGTTTGCAATT 58.243 32.000 0.00 0.00 0.00 2.32
1412 1426 6.645827 TCCACAAGTGATTATGTTTGCAATTG 59.354 34.615 0.00 0.00 40.77 2.32
1413 1427 6.424509 CCACAAGTGATTATGTTTGCAATTGT 59.575 34.615 7.40 0.58 46.34 2.71
1414 1428 7.410800 ACAAGTGATTATGTTTGCAATTGTG 57.589 32.000 7.40 0.00 44.54 3.33
1415 1429 6.424509 ACAAGTGATTATGTTTGCAATTGTGG 59.575 34.615 7.40 0.00 44.54 4.17
1416 1430 6.100404 AGTGATTATGTTTGCAATTGTGGT 57.900 33.333 7.40 0.00 0.00 4.16
1417 1431 6.523840 AGTGATTATGTTTGCAATTGTGGTT 58.476 32.000 7.40 0.00 0.00 3.67
1418 1432 6.424509 AGTGATTATGTTTGCAATTGTGGTTG 59.575 34.615 7.40 0.00 0.00 3.77
1419 1433 6.202570 GTGATTATGTTTGCAATTGTGGTTGT 59.797 34.615 7.40 0.00 0.00 3.32
1420 1434 7.383572 GTGATTATGTTTGCAATTGTGGTTGTA 59.616 33.333 7.40 0.00 0.00 2.41
1421 1435 8.093307 TGATTATGTTTGCAATTGTGGTTGTAT 58.907 29.630 7.40 0.00 0.00 2.29
1422 1436 8.845413 ATTATGTTTGCAATTGTGGTTGTATT 57.155 26.923 7.40 0.00 0.00 1.89
1423 1437 8.668510 TTATGTTTGCAATTGTGGTTGTATTT 57.331 26.923 7.40 0.00 0.00 1.40
1424 1438 9.764363 TTATGTTTGCAATTGTGGTTGTATTTA 57.236 25.926 7.40 0.00 0.00 1.40
1425 1439 7.470289 TGTTTGCAATTGTGGTTGTATTTAC 57.530 32.000 7.40 0.00 0.00 2.01
1426 1440 6.480320 TGTTTGCAATTGTGGTTGTATTTACC 59.520 34.615 7.40 0.00 36.17 2.85
1427 1441 5.791336 TGCAATTGTGGTTGTATTTACCA 57.209 34.783 7.40 0.00 43.20 3.25
1428 1442 6.161855 TGCAATTGTGGTTGTATTTACCAA 57.838 33.333 7.40 0.00 46.62 3.67
1429 1443 5.986135 TGCAATTGTGGTTGTATTTACCAAC 59.014 36.000 7.40 0.00 46.62 3.77
1430 1444 5.986135 GCAATTGTGGTTGTATTTACCAACA 59.014 36.000 7.40 0.00 46.62 3.33
1431 1445 6.145371 GCAATTGTGGTTGTATTTACCAACAG 59.855 38.462 7.40 0.00 46.62 3.16
1432 1446 7.429633 CAATTGTGGTTGTATTTACCAACAGA 58.570 34.615 0.00 0.00 46.62 3.41
1433 1447 7.589958 ATTGTGGTTGTATTTACCAACAGAA 57.410 32.000 5.73 0.00 46.62 3.02
1434 1448 6.380095 TGTGGTTGTATTTACCAACAGAAC 57.620 37.500 5.73 2.18 46.62 3.01
1435 1449 5.886474 TGTGGTTGTATTTACCAACAGAACA 59.114 36.000 5.73 4.32 46.62 3.18
1436 1450 6.183360 TGTGGTTGTATTTACCAACAGAACAC 60.183 38.462 5.73 5.04 46.62 3.32
1437 1451 5.886474 TGGTTGTATTTACCAACAGAACACA 59.114 36.000 5.73 0.00 42.50 3.72
1438 1452 6.377429 TGGTTGTATTTACCAACAGAACACAA 59.623 34.615 5.73 0.00 42.50 3.33
1439 1453 7.093902 TGGTTGTATTTACCAACAGAACACAAA 60.094 33.333 5.73 0.00 42.50 2.83
1440 1454 7.434013 GGTTGTATTTACCAACAGAACACAAAG 59.566 37.037 5.73 0.00 35.67 2.77
1441 1455 7.867305 TGTATTTACCAACAGAACACAAAGA 57.133 32.000 0.00 0.00 0.00 2.52
1442 1456 8.458573 TGTATTTACCAACAGAACACAAAGAT 57.541 30.769 0.00 0.00 0.00 2.40
1443 1457 8.349245 TGTATTTACCAACAGAACACAAAGATG 58.651 33.333 0.00 0.00 0.00 2.90
1444 1458 7.581213 ATTTACCAACAGAACACAAAGATGA 57.419 32.000 0.00 0.00 0.00 2.92
1445 1459 7.581213 TTTACCAACAGAACACAAAGATGAT 57.419 32.000 0.00 0.00 0.00 2.45
1446 1460 5.695851 ACCAACAGAACACAAAGATGATC 57.304 39.130 0.00 0.00 0.00 2.92
1447 1461 4.214119 ACCAACAGAACACAAAGATGATCG 59.786 41.667 0.00 0.00 0.00 3.69
1448 1462 4.214119 CCAACAGAACACAAAGATGATCGT 59.786 41.667 0.00 0.00 0.00 3.73
1449 1463 5.277974 CCAACAGAACACAAAGATGATCGTT 60.278 40.000 0.00 0.00 0.00 3.85
1450 1464 5.348418 ACAGAACACAAAGATGATCGTTG 57.652 39.130 17.44 17.44 40.77 4.10
1451 1465 4.153986 CAGAACACAAAGATGATCGTTGC 58.846 43.478 18.65 5.02 39.02 4.17
1452 1466 3.189287 AGAACACAAAGATGATCGTTGCC 59.811 43.478 18.65 7.77 39.02 4.52
1453 1467 2.783135 ACACAAAGATGATCGTTGCCT 58.217 42.857 18.65 3.68 39.02 4.75
1454 1468 3.937814 ACACAAAGATGATCGTTGCCTA 58.062 40.909 18.65 0.00 39.02 3.93
1455 1469 4.517285 ACACAAAGATGATCGTTGCCTAT 58.483 39.130 18.65 0.00 39.02 2.57
1456 1470 4.943705 ACACAAAGATGATCGTTGCCTATT 59.056 37.500 18.65 0.00 39.02 1.73
1457 1471 5.163723 ACACAAAGATGATCGTTGCCTATTG 60.164 40.000 18.65 12.28 39.02 1.90
1458 1472 4.943705 ACAAAGATGATCGTTGCCTATTGT 59.056 37.500 18.65 0.00 39.02 2.71
1459 1473 5.415701 ACAAAGATGATCGTTGCCTATTGTT 59.584 36.000 18.65 0.00 39.02 2.83
1460 1474 5.490139 AAGATGATCGTTGCCTATTGTTG 57.510 39.130 0.00 0.00 0.00 3.33
1461 1475 4.769688 AGATGATCGTTGCCTATTGTTGA 58.230 39.130 0.00 0.00 0.00 3.18
1462 1476 5.185454 AGATGATCGTTGCCTATTGTTGAA 58.815 37.500 0.00 0.00 0.00 2.69
1463 1477 5.647658 AGATGATCGTTGCCTATTGTTGAAA 59.352 36.000 0.00 0.00 0.00 2.69
1464 1478 5.295431 TGATCGTTGCCTATTGTTGAAAG 57.705 39.130 0.00 0.00 0.00 2.62
1465 1479 4.155826 TGATCGTTGCCTATTGTTGAAAGG 59.844 41.667 0.00 0.00 0.00 3.11
1466 1480 3.482436 TCGTTGCCTATTGTTGAAAGGT 58.518 40.909 0.00 0.00 32.67 3.50
1467 1481 3.252215 TCGTTGCCTATTGTTGAAAGGTG 59.748 43.478 0.00 0.00 32.67 4.00
1468 1482 3.252215 CGTTGCCTATTGTTGAAAGGTGA 59.748 43.478 0.00 0.00 32.67 4.02
1469 1483 4.613622 CGTTGCCTATTGTTGAAAGGTGAG 60.614 45.833 0.00 0.00 32.67 3.51
1470 1484 4.365514 TGCCTATTGTTGAAAGGTGAGA 57.634 40.909 0.00 0.00 32.67 3.27
1471 1485 4.724399 TGCCTATTGTTGAAAGGTGAGAA 58.276 39.130 0.00 0.00 32.67 2.87
1472 1486 4.761739 TGCCTATTGTTGAAAGGTGAGAAG 59.238 41.667 0.00 0.00 32.67 2.85
1473 1487 4.156739 GCCTATTGTTGAAAGGTGAGAAGG 59.843 45.833 0.00 0.00 32.67 3.46
1474 1488 4.702131 CCTATTGTTGAAAGGTGAGAAGGG 59.298 45.833 0.00 0.00 0.00 3.95
1475 1489 3.943671 TTGTTGAAAGGTGAGAAGGGA 57.056 42.857 0.00 0.00 0.00 4.20
1476 1490 4.453480 TTGTTGAAAGGTGAGAAGGGAT 57.547 40.909 0.00 0.00 0.00 3.85
1477 1491 4.453480 TGTTGAAAGGTGAGAAGGGATT 57.547 40.909 0.00 0.00 0.00 3.01
1478 1492 4.803452 TGTTGAAAGGTGAGAAGGGATTT 58.197 39.130 0.00 0.00 0.00 2.17
1479 1493 4.584325 TGTTGAAAGGTGAGAAGGGATTTG 59.416 41.667 0.00 0.00 0.00 2.32
1480 1494 3.766545 TGAAAGGTGAGAAGGGATTTGG 58.233 45.455 0.00 0.00 0.00 3.28
1481 1495 3.140144 TGAAAGGTGAGAAGGGATTTGGT 59.860 43.478 0.00 0.00 0.00 3.67
1482 1496 2.887151 AGGTGAGAAGGGATTTGGTG 57.113 50.000 0.00 0.00 0.00 4.17
1483 1497 2.348472 AGGTGAGAAGGGATTTGGTGA 58.652 47.619 0.00 0.00 0.00 4.02
1484 1498 2.716424 AGGTGAGAAGGGATTTGGTGAA 59.284 45.455 0.00 0.00 0.00 3.18
1485 1499 3.140144 AGGTGAGAAGGGATTTGGTGAAA 59.860 43.478 0.00 0.00 0.00 2.69
1486 1500 4.089361 GGTGAGAAGGGATTTGGTGAAAT 58.911 43.478 0.00 0.00 34.29 2.17
1487 1501 5.015178 AGGTGAGAAGGGATTTGGTGAAATA 59.985 40.000 0.00 0.00 31.58 1.40
1488 1502 5.358160 GGTGAGAAGGGATTTGGTGAAATAG 59.642 44.000 0.00 0.00 31.58 1.73
1489 1503 5.946377 GTGAGAAGGGATTTGGTGAAATAGT 59.054 40.000 0.00 0.00 31.58 2.12
1490 1504 6.434340 GTGAGAAGGGATTTGGTGAAATAGTT 59.566 38.462 0.00 0.00 31.58 2.24
1491 1505 7.010160 TGAGAAGGGATTTGGTGAAATAGTTT 58.990 34.615 0.00 0.00 31.58 2.66
1492 1506 7.039784 TGAGAAGGGATTTGGTGAAATAGTTTG 60.040 37.037 0.00 0.00 31.58 2.93
1493 1507 6.782494 AGAAGGGATTTGGTGAAATAGTTTGT 59.218 34.615 0.00 0.00 31.58 2.83
1494 1508 6.994421 AGGGATTTGGTGAAATAGTTTGTT 57.006 33.333 0.00 0.00 31.58 2.83
1495 1509 6.758254 AGGGATTTGGTGAAATAGTTTGTTG 58.242 36.000 0.00 0.00 31.58 3.33
1496 1510 6.326323 AGGGATTTGGTGAAATAGTTTGTTGT 59.674 34.615 0.00 0.00 31.58 3.32
1497 1511 7.507616 AGGGATTTGGTGAAATAGTTTGTTGTA 59.492 33.333 0.00 0.00 31.58 2.41
1498 1512 8.311109 GGGATTTGGTGAAATAGTTTGTTGTAT 58.689 33.333 0.00 0.00 31.58 2.29
1499 1513 9.705290 GGATTTGGTGAAATAGTTTGTTGTATT 57.295 29.630 0.00 0.00 31.58 1.89
1501 1515 7.938563 TTGGTGAAATAGTTTGTTGTATTGC 57.061 32.000 0.00 0.00 0.00 3.56
1502 1516 7.283625 TGGTGAAATAGTTTGTTGTATTGCT 57.716 32.000 0.00 0.00 0.00 3.91
1503 1517 7.721402 TGGTGAAATAGTTTGTTGTATTGCTT 58.279 30.769 0.00 0.00 0.00 3.91
1504 1518 7.651304 TGGTGAAATAGTTTGTTGTATTGCTTG 59.349 33.333 0.00 0.00 0.00 4.01
1505 1519 7.865385 GGTGAAATAGTTTGTTGTATTGCTTGA 59.135 33.333 0.00 0.00 0.00 3.02
1506 1520 8.905702 GTGAAATAGTTTGTTGTATTGCTTGAG 58.094 33.333 0.00 0.00 0.00 3.02
1507 1521 7.594758 TGAAATAGTTTGTTGTATTGCTTGAGC 59.405 33.333 0.00 0.00 42.50 4.26
1508 1522 4.243007 AGTTTGTTGTATTGCTTGAGCC 57.757 40.909 0.00 0.00 41.18 4.70
1509 1523 3.891366 AGTTTGTTGTATTGCTTGAGCCT 59.109 39.130 0.00 0.00 41.18 4.58
1510 1524 4.022849 AGTTTGTTGTATTGCTTGAGCCTC 60.023 41.667 0.00 0.00 41.18 4.70
1511 1525 2.076100 TGTTGTATTGCTTGAGCCTCG 58.924 47.619 0.00 0.00 41.18 4.63
1512 1526 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
1513 1527 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
1514 1528 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
1515 1529 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
1527 1541 3.526931 CCTCGTGGGCATACATATAGG 57.473 52.381 0.00 0.00 0.00 2.57
1528 1542 3.096852 CCTCGTGGGCATACATATAGGA 58.903 50.000 0.00 0.00 0.00 2.94
1529 1543 3.131223 CCTCGTGGGCATACATATAGGAG 59.869 52.174 0.00 0.00 0.00 3.69
1530 1544 3.764434 CTCGTGGGCATACATATAGGAGT 59.236 47.826 0.00 0.00 0.00 3.85
1531 1545 4.925836 TCGTGGGCATACATATAGGAGTA 58.074 43.478 0.00 0.00 0.00 2.59
1532 1546 4.703575 TCGTGGGCATACATATAGGAGTAC 59.296 45.833 0.00 0.00 0.00 2.73
1533 1547 4.461431 CGTGGGCATACATATAGGAGTACA 59.539 45.833 0.00 0.00 0.00 2.90
1534 1548 5.127194 CGTGGGCATACATATAGGAGTACAT 59.873 44.000 0.00 0.00 0.00 2.29
1535 1549 6.341316 GTGGGCATACATATAGGAGTACATG 58.659 44.000 0.00 0.00 0.00 3.21
1536 1550 6.154534 GTGGGCATACATATAGGAGTACATGA 59.845 42.308 0.00 0.00 0.00 3.07
1537 1551 6.902974 TGGGCATACATATAGGAGTACATGAT 59.097 38.462 0.00 0.00 0.00 2.45
1538 1552 7.069950 TGGGCATACATATAGGAGTACATGATC 59.930 40.741 0.00 0.00 0.00 2.92
1539 1553 7.288852 GGGCATACATATAGGAGTACATGATCT 59.711 40.741 0.00 0.00 0.00 2.75
1540 1554 9.355916 GGCATACATATAGGAGTACATGATCTA 57.644 37.037 0.00 0.00 0.00 1.98
1545 1559 9.249053 ACATATAGGAGTACATGATCTACTTGG 57.751 37.037 0.00 0.00 0.00 3.61
1546 1560 9.467796 CATATAGGAGTACATGATCTACTTGGA 57.532 37.037 0.00 0.00 0.00 3.53
1547 1561 9.693739 ATATAGGAGTACATGATCTACTTGGAG 57.306 37.037 0.00 0.00 0.00 3.86
1548 1562 5.772004 AGGAGTACATGATCTACTTGGAGT 58.228 41.667 0.00 0.00 0.00 3.85
1549 1563 6.912426 AGGAGTACATGATCTACTTGGAGTA 58.088 40.000 0.00 0.00 0.00 2.59
1550 1564 6.773685 AGGAGTACATGATCTACTTGGAGTAC 59.226 42.308 0.00 0.00 0.00 2.73
1551 1565 6.546403 GGAGTACATGATCTACTTGGAGTACA 59.454 42.308 0.00 0.00 0.00 2.90
1552 1566 7.068348 GGAGTACATGATCTACTTGGAGTACAA 59.932 40.741 0.00 0.00 37.55 2.41
1560 1574 3.339547 TTGGAGTACAAGGCAAGCC 57.660 52.632 2.02 2.02 33.18 4.35
1561 1575 0.476338 TTGGAGTACAAGGCAAGCCA 59.524 50.000 14.40 0.00 38.92 4.75
1562 1576 0.036732 TGGAGTACAAGGCAAGCCAG 59.963 55.000 14.40 7.89 38.92 4.85
1563 1577 0.324943 GGAGTACAAGGCAAGCCAGA 59.675 55.000 14.40 0.00 38.92 3.86
1564 1578 1.271379 GGAGTACAAGGCAAGCCAGAA 60.271 52.381 14.40 0.00 38.92 3.02
1565 1579 2.619074 GGAGTACAAGGCAAGCCAGAAT 60.619 50.000 14.40 0.00 38.92 2.40
1566 1580 3.370527 GGAGTACAAGGCAAGCCAGAATA 60.371 47.826 14.40 0.00 38.92 1.75
1567 1581 4.455606 GAGTACAAGGCAAGCCAGAATAT 58.544 43.478 14.40 0.00 38.92 1.28
1568 1582 4.860022 AGTACAAGGCAAGCCAGAATATT 58.140 39.130 14.40 0.00 38.92 1.28
1569 1583 5.264395 AGTACAAGGCAAGCCAGAATATTT 58.736 37.500 14.40 0.00 38.92 1.40
1570 1584 4.725790 ACAAGGCAAGCCAGAATATTTC 57.274 40.909 14.40 0.00 38.92 2.17
1571 1585 3.448660 ACAAGGCAAGCCAGAATATTTCC 59.551 43.478 14.40 0.00 38.92 3.13
1572 1586 3.677156 AGGCAAGCCAGAATATTTCCT 57.323 42.857 14.40 0.00 38.92 3.36
1573 1587 4.796110 AGGCAAGCCAGAATATTTCCTA 57.204 40.909 14.40 0.00 38.92 2.94
1574 1588 4.723309 AGGCAAGCCAGAATATTTCCTAG 58.277 43.478 14.40 0.00 38.92 3.02
1575 1589 4.166919 AGGCAAGCCAGAATATTTCCTAGT 59.833 41.667 14.40 0.00 38.92 2.57
1576 1590 4.517075 GGCAAGCCAGAATATTTCCTAGTC 59.483 45.833 6.14 0.00 35.81 2.59
1577 1591 5.372373 GCAAGCCAGAATATTTCCTAGTCT 58.628 41.667 0.00 0.00 35.19 3.24
1578 1592 6.464465 GGCAAGCCAGAATATTTCCTAGTCTA 60.464 42.308 6.14 0.00 33.14 2.59
1579 1593 6.992715 GCAAGCCAGAATATTTCCTAGTCTAA 59.007 38.462 0.00 0.00 33.14 2.10
1580 1594 7.041712 GCAAGCCAGAATATTTCCTAGTCTAAC 60.042 40.741 0.00 0.00 33.14 2.34
1581 1595 7.676683 AGCCAGAATATTTCCTAGTCTAACA 57.323 36.000 0.00 0.00 33.14 2.41
1582 1596 8.268878 AGCCAGAATATTTCCTAGTCTAACAT 57.731 34.615 0.00 0.00 33.14 2.71
1583 1597 9.381038 AGCCAGAATATTTCCTAGTCTAACATA 57.619 33.333 0.00 0.00 33.14 2.29
1604 1618 8.958119 ACATATGTTTCCTAATACAATCACGT 57.042 30.769 1.41 0.00 0.00 4.49
1605 1619 9.391006 ACATATGTTTCCTAATACAATCACGTT 57.609 29.630 1.41 0.00 0.00 3.99
1609 1623 8.470040 TGTTTCCTAATACAATCACGTTACTC 57.530 34.615 0.00 0.00 0.00 2.59
1610 1624 8.089597 TGTTTCCTAATACAATCACGTTACTCA 58.910 33.333 0.00 0.00 0.00 3.41
1611 1625 8.928733 GTTTCCTAATACAATCACGTTACTCAA 58.071 33.333 0.00 0.00 0.00 3.02
1612 1626 8.470040 TTCCTAATACAATCACGTTACTCAAC 57.530 34.615 0.00 0.00 0.00 3.18
1613 1627 7.604549 TCCTAATACAATCACGTTACTCAACA 58.395 34.615 0.00 0.00 34.05 3.33
1614 1628 8.255206 TCCTAATACAATCACGTTACTCAACAT 58.745 33.333 0.00 0.00 34.05 2.71
1615 1629 8.540492 CCTAATACAATCACGTTACTCAACATC 58.460 37.037 0.00 0.00 34.05 3.06
1616 1630 6.903883 ATACAATCACGTTACTCAACATCC 57.096 37.500 0.00 0.00 34.05 3.51
1617 1631 4.000988 ACAATCACGTTACTCAACATCCC 58.999 43.478 0.00 0.00 34.05 3.85
1618 1632 2.754946 TCACGTTACTCAACATCCCC 57.245 50.000 0.00 0.00 34.05 4.81
1619 1633 1.276989 TCACGTTACTCAACATCCCCC 59.723 52.381 0.00 0.00 34.05 5.40
1620 1634 0.248289 ACGTTACTCAACATCCCCCG 59.752 55.000 0.00 0.00 34.05 5.73
1621 1635 1.087771 CGTTACTCAACATCCCCCGC 61.088 60.000 0.00 0.00 34.05 6.13
1622 1636 0.035820 GTTACTCAACATCCCCCGCA 60.036 55.000 0.00 0.00 34.60 5.69
1623 1637 0.251916 TTACTCAACATCCCCCGCAG 59.748 55.000 0.00 0.00 0.00 5.18
1624 1638 0.907704 TACTCAACATCCCCCGCAGT 60.908 55.000 0.00 0.00 0.00 4.40
1625 1639 1.450312 CTCAACATCCCCCGCAGTC 60.450 63.158 0.00 0.00 0.00 3.51
1626 1640 2.184020 CTCAACATCCCCCGCAGTCA 62.184 60.000 0.00 0.00 0.00 3.41
1627 1641 2.040544 CAACATCCCCCGCAGTCAC 61.041 63.158 0.00 0.00 0.00 3.67
1628 1642 2.525124 AACATCCCCCGCAGTCACA 61.525 57.895 0.00 0.00 0.00 3.58
1629 1643 2.063015 AACATCCCCCGCAGTCACAA 62.063 55.000 0.00 0.00 0.00 3.33
1630 1644 2.040544 CATCCCCCGCAGTCACAAC 61.041 63.158 0.00 0.00 0.00 3.32
1631 1645 3.605749 ATCCCCCGCAGTCACAACG 62.606 63.158 0.00 0.00 0.00 4.10
1633 1647 4.619227 CCCCGCAGTCACAACGGT 62.619 66.667 7.64 0.00 45.49 4.83
1634 1648 2.340809 CCCGCAGTCACAACGGTA 59.659 61.111 7.64 0.00 45.49 4.02
1635 1649 1.736645 CCCGCAGTCACAACGGTAG 60.737 63.158 7.64 0.00 45.49 3.18
1636 1650 2.380410 CCGCAGTCACAACGGTAGC 61.380 63.158 0.43 0.00 42.01 3.58
1637 1651 2.716828 CGCAGTCACAACGGTAGCG 61.717 63.158 13.69 13.69 37.68 4.26
1638 1652 1.372499 GCAGTCACAACGGTAGCGA 60.372 57.895 22.88 0.00 0.00 4.93
1639 1653 1.615107 GCAGTCACAACGGTAGCGAC 61.615 60.000 22.88 8.20 0.00 5.19
1640 1654 1.081641 AGTCACAACGGTAGCGACG 60.082 57.895 22.88 13.36 37.36 5.12
1641 1655 2.429571 TCACAACGGTAGCGACGC 60.430 61.111 22.88 13.03 34.00 5.19
1642 1656 3.823421 CACAACGGTAGCGACGCG 61.823 66.667 22.88 3.53 34.00 6.01
1644 1658 4.764336 CAACGGTAGCGACGCGGA 62.764 66.667 22.88 3.49 34.00 5.54
1645 1659 4.766088 AACGGTAGCGACGCGGAC 62.766 66.667 22.88 16.05 34.00 4.79
1654 1668 3.735029 GACGCGGACGGTGAGACT 61.735 66.667 12.47 0.00 46.04 3.24
1655 1669 3.948086 GACGCGGACGGTGAGACTG 62.948 68.421 12.47 0.00 46.04 3.51
1656 1670 4.778415 CGCGGACGGTGAGACTGG 62.778 72.222 0.00 0.00 34.97 4.00
1657 1671 3.371063 GCGGACGGTGAGACTGGA 61.371 66.667 0.00 0.00 0.00 3.86
1658 1672 2.878429 CGGACGGTGAGACTGGAG 59.122 66.667 0.00 0.00 0.00 3.86
1659 1673 1.674651 CGGACGGTGAGACTGGAGA 60.675 63.158 0.00 0.00 0.00 3.71
1660 1674 1.241990 CGGACGGTGAGACTGGAGAA 61.242 60.000 0.00 0.00 0.00 2.87
1661 1675 0.528470 GGACGGTGAGACTGGAGAAG 59.472 60.000 0.00 0.00 0.00 2.85
1662 1676 1.535833 GACGGTGAGACTGGAGAAGA 58.464 55.000 0.00 0.00 0.00 2.87
1663 1677 1.887198 GACGGTGAGACTGGAGAAGAA 59.113 52.381 0.00 0.00 0.00 2.52
1664 1678 2.494073 GACGGTGAGACTGGAGAAGAAT 59.506 50.000 0.00 0.00 0.00 2.40
1665 1679 2.494073 ACGGTGAGACTGGAGAAGAATC 59.506 50.000 0.00 0.00 0.00 2.52
1666 1680 2.159170 CGGTGAGACTGGAGAAGAATCC 60.159 54.545 0.00 0.00 40.03 3.01
1667 1681 2.159170 GGTGAGACTGGAGAAGAATCCG 60.159 54.545 0.00 0.00 42.77 4.18
1668 1682 2.755655 GTGAGACTGGAGAAGAATCCGA 59.244 50.000 0.00 0.00 42.77 4.55
1669 1683 3.193691 GTGAGACTGGAGAAGAATCCGAA 59.806 47.826 0.00 0.00 42.77 4.30
1670 1684 3.445450 TGAGACTGGAGAAGAATCCGAAG 59.555 47.826 0.00 0.00 42.77 3.79
1682 1696 2.048222 CCGAAGGCAAGCTGACGA 60.048 61.111 0.00 0.00 46.14 4.20
1683 1697 1.667830 CCGAAGGCAAGCTGACGAA 60.668 57.895 0.00 0.00 46.14 3.85
1684 1698 1.493311 CGAAGGCAAGCTGACGAAC 59.507 57.895 0.00 0.00 0.00 3.95
1685 1699 1.221466 CGAAGGCAAGCTGACGAACA 61.221 55.000 0.00 0.00 0.00 3.18
1686 1700 0.235926 GAAGGCAAGCTGACGAACAC 59.764 55.000 0.00 0.00 0.00 3.32
1687 1701 1.166531 AAGGCAAGCTGACGAACACC 61.167 55.000 0.00 0.00 0.00 4.16
1688 1702 2.617274 GGCAAGCTGACGAACACCC 61.617 63.158 0.00 0.00 0.00 4.61
1689 1703 2.617274 GCAAGCTGACGAACACCCC 61.617 63.158 0.00 0.00 0.00 4.95
1690 1704 1.966451 CAAGCTGACGAACACCCCC 60.966 63.158 0.00 0.00 0.00 5.40
1704 1718 2.263540 CCCCCACAGTCGTAACGG 59.736 66.667 0.00 0.00 0.00 4.44
1705 1719 2.576832 CCCCCACAGTCGTAACGGT 61.577 63.158 0.00 0.00 33.83 4.83
1706 1720 1.080298 CCCCACAGTCGTAACGGTC 60.080 63.158 0.00 0.00 30.93 4.79
1707 1721 1.443194 CCCACAGTCGTAACGGTCG 60.443 63.158 0.00 0.00 30.93 4.79
1708 1722 1.575922 CCACAGTCGTAACGGTCGA 59.424 57.895 0.00 0.00 30.93 4.20
1725 1739 2.500442 GACGCATCGCAGAGTCGTG 61.500 63.158 10.59 0.00 45.40 4.35
1726 1740 3.250323 CGCATCGCAGAGTCGTGG 61.250 66.667 0.00 0.00 43.63 4.94
1727 1741 3.558411 GCATCGCAGAGTCGTGGC 61.558 66.667 0.00 0.00 43.63 5.01
1728 1742 2.182791 CATCGCAGAGTCGTGGCT 59.817 61.111 3.60 0.00 43.63 4.75
1729 1743 2.163390 CATCGCAGAGTCGTGGCTG 61.163 63.158 0.00 0.00 43.63 4.85
1730 1744 3.362399 ATCGCAGAGTCGTGGCTGG 62.362 63.158 0.00 0.00 43.63 4.85
1731 1745 4.056125 CGCAGAGTCGTGGCTGGA 62.056 66.667 0.00 0.00 32.83 3.86
1732 1746 2.125753 GCAGAGTCGTGGCTGGAG 60.126 66.667 0.00 0.00 32.83 3.86
1733 1747 2.936912 GCAGAGTCGTGGCTGGAGT 61.937 63.158 0.00 0.00 32.83 3.85
1734 1748 1.080230 CAGAGTCGTGGCTGGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
1735 1749 2.262915 GAGTCGTGGCTGGAGTGG 59.737 66.667 0.00 0.00 0.00 4.00
1736 1750 3.941657 GAGTCGTGGCTGGAGTGGC 62.942 68.421 0.00 0.00 0.00 5.01
1737 1751 4.314440 GTCGTGGCTGGAGTGGCA 62.314 66.667 0.00 0.00 40.25 4.92
1738 1752 3.555324 TCGTGGCTGGAGTGGCAA 61.555 61.111 0.00 0.00 44.02 4.52
1739 1753 3.357079 CGTGGCTGGAGTGGCAAC 61.357 66.667 0.00 0.00 44.02 4.17
1740 1754 2.985847 GTGGCTGGAGTGGCAACC 60.986 66.667 5.21 5.21 44.02 3.77
1741 1755 4.641645 TGGCTGGAGTGGCAACCG 62.642 66.667 7.33 4.29 39.58 4.44
1742 1756 4.329545 GGCTGGAGTGGCAACCGA 62.330 66.667 7.33 0.00 0.00 4.69
1743 1757 3.050275 GCTGGAGTGGCAACCGAC 61.050 66.667 7.33 0.00 0.00 4.79
1744 1758 2.738521 CTGGAGTGGCAACCGACG 60.739 66.667 7.33 0.00 0.00 5.12
1745 1759 3.220999 CTGGAGTGGCAACCGACGA 62.221 63.158 0.00 0.00 0.00 4.20
1746 1760 2.432628 GGAGTGGCAACCGACGAG 60.433 66.667 0.00 0.00 0.00 4.18
1747 1761 2.649034 GAGTGGCAACCGACGAGA 59.351 61.111 0.00 0.00 0.00 4.04
1748 1762 1.215647 GAGTGGCAACCGACGAGAT 59.784 57.895 0.00 0.00 0.00 2.75
1749 1763 0.389948 GAGTGGCAACCGACGAGATT 60.390 55.000 0.00 0.00 0.00 2.40
1750 1764 0.670546 AGTGGCAACCGACGAGATTG 60.671 55.000 0.00 0.00 0.00 2.67
1752 1766 3.876300 GCAACCGACGAGATTGCT 58.124 55.556 18.33 0.00 45.94 3.91
1753 1767 1.710339 GCAACCGACGAGATTGCTC 59.290 57.895 18.33 0.00 45.94 4.26
1754 1768 1.014044 GCAACCGACGAGATTGCTCA 61.014 55.000 18.33 0.00 45.94 4.26
1755 1769 1.428448 CAACCGACGAGATTGCTCAA 58.572 50.000 0.00 0.00 41.36 3.02
1756 1770 1.391485 CAACCGACGAGATTGCTCAAG 59.609 52.381 0.00 0.00 41.36 3.02
1757 1771 0.737715 ACCGACGAGATTGCTCAAGC 60.738 55.000 0.00 0.00 41.36 4.01
1767 1781 3.490890 GCTCAAGCAAGGCGGTAG 58.509 61.111 0.00 0.00 41.59 3.18
1768 1782 1.376037 GCTCAAGCAAGGCGGTAGT 60.376 57.895 0.00 0.00 41.59 2.73
1769 1783 1.362406 GCTCAAGCAAGGCGGTAGTC 61.362 60.000 0.00 0.00 41.59 2.59
1770 1784 0.741221 CTCAAGCAAGGCGGTAGTCC 60.741 60.000 0.00 0.00 0.00 3.85
1771 1785 1.192146 TCAAGCAAGGCGGTAGTCCT 61.192 55.000 0.00 0.00 34.90 3.85
1772 1786 0.321653 CAAGCAAGGCGGTAGTCCTT 60.322 55.000 0.00 0.00 44.31 3.36
1773 1787 0.400594 AAGCAAGGCGGTAGTCCTTT 59.599 50.000 0.00 0.00 41.73 3.11
1774 1788 0.321653 AGCAAGGCGGTAGTCCTTTG 60.322 55.000 0.00 0.00 41.73 2.77
1775 1789 0.605589 GCAAGGCGGTAGTCCTTTGT 60.606 55.000 0.00 0.00 41.73 2.83
1776 1790 1.156736 CAAGGCGGTAGTCCTTTGTG 58.843 55.000 0.00 0.00 41.73 3.33
1777 1791 0.605589 AAGGCGGTAGTCCTTTGTGC 60.606 55.000 0.00 0.00 40.87 4.57
1778 1792 2.038837 GGCGGTAGTCCTTTGTGCC 61.039 63.158 0.00 0.00 0.00 5.01
1779 1793 2.388232 GCGGTAGTCCTTTGTGCCG 61.388 63.158 0.00 0.00 41.79 5.69
1780 1794 1.005394 CGGTAGTCCTTTGTGCCGT 60.005 57.895 0.00 0.00 35.11 5.68
1781 1795 0.601841 CGGTAGTCCTTTGTGCCGTT 60.602 55.000 0.00 0.00 35.11 4.44
1782 1796 1.601166 GGTAGTCCTTTGTGCCGTTT 58.399 50.000 0.00 0.00 0.00 3.60
1783 1797 1.265905 GGTAGTCCTTTGTGCCGTTTG 59.734 52.381 0.00 0.00 0.00 2.93
1784 1798 1.944709 GTAGTCCTTTGTGCCGTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
1785 1799 1.021968 AGTCCTTTGTGCCGTTTGTC 58.978 50.000 0.00 0.00 0.00 3.18
1786 1800 0.316689 GTCCTTTGTGCCGTTTGTCG 60.317 55.000 0.00 0.00 39.52 4.35
1787 1801 0.462225 TCCTTTGTGCCGTTTGTCGA 60.462 50.000 0.00 0.00 42.86 4.20
1788 1802 0.041312 CCTTTGTGCCGTTTGTCGAG 60.041 55.000 0.00 0.00 42.86 4.04
1789 1803 0.041312 CTTTGTGCCGTTTGTCGAGG 60.041 55.000 0.00 0.00 42.86 4.63
1790 1804 0.745128 TTTGTGCCGTTTGTCGAGGT 60.745 50.000 0.00 0.00 42.86 3.85
1791 1805 0.104487 TTGTGCCGTTTGTCGAGGTA 59.896 50.000 0.00 0.00 42.86 3.08
1792 1806 0.319211 TGTGCCGTTTGTCGAGGTAG 60.319 55.000 0.00 0.00 42.86 3.18
1793 1807 1.373748 TGCCGTTTGTCGAGGTAGC 60.374 57.895 0.00 0.00 42.86 3.58
1794 1808 2.098831 GCCGTTTGTCGAGGTAGCC 61.099 63.158 0.00 0.00 42.86 3.93
1795 1809 1.804326 CCGTTTGTCGAGGTAGCCG 60.804 63.158 0.00 0.00 42.86 5.52
1796 1810 1.210931 CGTTTGTCGAGGTAGCCGA 59.789 57.895 2.07 2.07 42.86 5.54
1797 1811 0.797249 CGTTTGTCGAGGTAGCCGAG 60.797 60.000 5.87 0.00 42.86 4.63
1798 1812 0.524862 GTTTGTCGAGGTAGCCGAGA 59.475 55.000 5.87 2.84 36.66 4.04
1799 1813 0.809385 TTTGTCGAGGTAGCCGAGAG 59.191 55.000 5.87 0.00 36.66 3.20
1800 1814 1.654954 TTGTCGAGGTAGCCGAGAGC 61.655 60.000 5.87 0.00 44.25 4.09
1809 1823 4.148825 GCCGAGAGCGTGGGTGAT 62.149 66.667 0.00 0.00 35.23 3.06
1810 1824 2.202797 CCGAGAGCGTGGGTGATG 60.203 66.667 0.00 0.00 35.23 3.07
1811 1825 2.202797 CGAGAGCGTGGGTGATGG 60.203 66.667 0.00 0.00 0.00 3.51
1812 1826 2.710902 CGAGAGCGTGGGTGATGGA 61.711 63.158 0.00 0.00 0.00 3.41
1813 1827 1.142748 GAGAGCGTGGGTGATGGAG 59.857 63.158 0.00 0.00 0.00 3.86
1814 1828 2.512515 GAGCGTGGGTGATGGAGC 60.513 66.667 0.00 0.00 0.00 4.70
1895 1909 4.388499 GCGAAAGACCTCGGGGCA 62.388 66.667 0.00 0.00 39.27 5.36
2027 2041 3.900892 CACTCGCTACGGCCCGAT 61.901 66.667 11.71 0.00 32.52 4.18
2180 2194 0.896226 GTGTAGCCGGGAGAAGAACT 59.104 55.000 2.18 0.00 0.00 3.01
2188 2202 1.262640 GGGAGAAGAACTACGGGGCA 61.263 60.000 0.00 0.00 0.00 5.36
2280 2295 1.534235 AGACAGTCTTCACGGGGCT 60.534 57.895 0.00 0.00 0.00 5.19
2309 2324 3.660111 GCACAACAGACGGGCCAC 61.660 66.667 4.39 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 3.825908 TGATAATAAATGCCCCCTCCC 57.174 47.619 0.00 0.00 0.00 4.30
566 575 8.868103 TCACAAGCTCTCTCAATAATCATATCT 58.132 33.333 0.00 0.00 0.00 1.98
605 614 0.474184 ATTCCAGTATTGCCTCCCCG 59.526 55.000 0.00 0.00 0.00 5.73
702 711 4.503296 CCTTCTTTCCCACCATAGATACCG 60.503 50.000 0.00 0.00 0.00 4.02
753 762 3.058450 CCATTGAGATCTGAGTCGCATC 58.942 50.000 0.00 0.00 0.00 3.91
959 972 6.044411 AGTCTATCTTTCCATTCCCTCCTA 57.956 41.667 0.00 0.00 0.00 2.94
1381 1395 9.023967 GCAAACATAATCACTTGTGGATAATTC 57.976 33.333 0.64 0.00 0.00 2.17
1382 1396 8.530311 TGCAAACATAATCACTTGTGGATAATT 58.470 29.630 0.64 0.00 0.00 1.40
1383 1397 8.065473 TGCAAACATAATCACTTGTGGATAAT 57.935 30.769 0.64 0.00 0.00 1.28
1384 1398 7.459795 TGCAAACATAATCACTTGTGGATAA 57.540 32.000 0.64 0.00 0.00 1.75
1385 1399 7.459795 TTGCAAACATAATCACTTGTGGATA 57.540 32.000 0.00 0.00 0.00 2.59
1386 1400 5.981088 TGCAAACATAATCACTTGTGGAT 57.019 34.783 0.64 0.00 0.00 3.41
1387 1401 5.781210 TTGCAAACATAATCACTTGTGGA 57.219 34.783 0.00 0.00 0.00 4.02
1388 1402 6.424509 ACAATTGCAAACATAATCACTTGTGG 59.575 34.615 1.71 0.00 33.22 4.17
1389 1403 7.285069 CACAATTGCAAACATAATCACTTGTG 58.715 34.615 16.31 16.31 40.77 3.33
1390 1404 6.424509 CCACAATTGCAAACATAATCACTTGT 59.575 34.615 1.71 2.36 34.23 3.16
1391 1405 6.424509 ACCACAATTGCAAACATAATCACTTG 59.575 34.615 1.71 1.66 0.00 3.16
1392 1406 6.523840 ACCACAATTGCAAACATAATCACTT 58.476 32.000 1.71 0.00 0.00 3.16
1393 1407 6.100404 ACCACAATTGCAAACATAATCACT 57.900 33.333 1.71 0.00 0.00 3.41
1394 1408 6.202570 ACAACCACAATTGCAAACATAATCAC 59.797 34.615 1.71 0.00 32.47 3.06
1395 1409 6.286758 ACAACCACAATTGCAAACATAATCA 58.713 32.000 1.71 0.00 32.47 2.57
1396 1410 6.783892 ACAACCACAATTGCAAACATAATC 57.216 33.333 1.71 0.00 32.47 1.75
1397 1411 8.845413 AATACAACCACAATTGCAAACATAAT 57.155 26.923 1.71 0.00 32.47 1.28
1398 1412 8.668510 AAATACAACCACAATTGCAAACATAA 57.331 26.923 1.71 0.00 32.47 1.90
1399 1413 9.197694 GTAAATACAACCACAATTGCAAACATA 57.802 29.630 1.71 0.00 32.47 2.29
1400 1414 7.172361 GGTAAATACAACCACAATTGCAAACAT 59.828 33.333 1.71 0.00 36.96 2.71
1401 1415 6.480320 GGTAAATACAACCACAATTGCAAACA 59.520 34.615 1.71 0.00 36.96 2.83
1402 1416 6.480320 TGGTAAATACAACCACAATTGCAAAC 59.520 34.615 1.71 0.00 42.10 2.93
1403 1417 6.582636 TGGTAAATACAACCACAATTGCAAA 58.417 32.000 1.71 0.00 42.10 3.68
1404 1418 6.161855 TGGTAAATACAACCACAATTGCAA 57.838 33.333 5.05 0.00 42.10 4.08
1405 1419 5.791336 TGGTAAATACAACCACAATTGCA 57.209 34.783 5.05 0.00 42.10 4.08
1406 1420 5.986135 TGTTGGTAAATACAACCACAATTGC 59.014 36.000 5.05 0.00 46.56 3.56
1407 1421 7.429633 TCTGTTGGTAAATACAACCACAATTG 58.570 34.615 3.24 3.24 46.56 2.32
1408 1422 7.589958 TCTGTTGGTAAATACAACCACAATT 57.410 32.000 5.92 0.00 46.56 2.32
1409 1423 7.068839 TGTTCTGTTGGTAAATACAACCACAAT 59.931 33.333 5.92 0.00 46.56 2.71
1410 1424 6.377429 TGTTCTGTTGGTAAATACAACCACAA 59.623 34.615 5.92 0.00 46.56 3.33
1411 1425 5.886474 TGTTCTGTTGGTAAATACAACCACA 59.114 36.000 5.92 4.13 46.56 4.17
1412 1426 6.183360 TGTGTTCTGTTGGTAAATACAACCAC 60.183 38.462 5.92 7.02 46.56 4.16
1413 1427 5.886474 TGTGTTCTGTTGGTAAATACAACCA 59.114 36.000 5.92 0.00 45.72 3.67
1414 1428 6.380095 TGTGTTCTGTTGGTAAATACAACC 57.620 37.500 5.92 0.00 45.72 3.77
1415 1429 8.185505 TCTTTGTGTTCTGTTGGTAAATACAAC 58.814 33.333 0.00 0.00 46.30 3.32
1416 1430 8.282455 TCTTTGTGTTCTGTTGGTAAATACAA 57.718 30.769 0.00 0.00 33.85 2.41
1417 1431 7.867305 TCTTTGTGTTCTGTTGGTAAATACA 57.133 32.000 0.00 0.00 0.00 2.29
1418 1432 8.564574 TCATCTTTGTGTTCTGTTGGTAAATAC 58.435 33.333 0.00 0.00 0.00 1.89
1419 1433 8.684386 TCATCTTTGTGTTCTGTTGGTAAATA 57.316 30.769 0.00 0.00 0.00 1.40
1420 1434 7.581213 TCATCTTTGTGTTCTGTTGGTAAAT 57.419 32.000 0.00 0.00 0.00 1.40
1421 1435 7.519809 CGATCATCTTTGTGTTCTGTTGGTAAA 60.520 37.037 0.00 0.00 0.00 2.01
1422 1436 6.073276 CGATCATCTTTGTGTTCTGTTGGTAA 60.073 38.462 0.00 0.00 0.00 2.85
1423 1437 5.408299 CGATCATCTTTGTGTTCTGTTGGTA 59.592 40.000 0.00 0.00 0.00 3.25
1424 1438 4.214119 CGATCATCTTTGTGTTCTGTTGGT 59.786 41.667 0.00 0.00 0.00 3.67
1425 1439 4.214119 ACGATCATCTTTGTGTTCTGTTGG 59.786 41.667 0.00 0.00 0.00 3.77
1426 1440 5.348418 ACGATCATCTTTGTGTTCTGTTG 57.652 39.130 0.00 0.00 0.00 3.33
1427 1441 5.751680 CAACGATCATCTTTGTGTTCTGTT 58.248 37.500 0.00 0.00 0.00 3.16
1428 1442 4.319766 GCAACGATCATCTTTGTGTTCTGT 60.320 41.667 5.81 0.00 29.53 3.41
1429 1443 4.153986 GCAACGATCATCTTTGTGTTCTG 58.846 43.478 5.81 0.00 29.53 3.02
1430 1444 3.189287 GGCAACGATCATCTTTGTGTTCT 59.811 43.478 5.81 0.00 29.53 3.01
1431 1445 3.189287 AGGCAACGATCATCTTTGTGTTC 59.811 43.478 5.81 0.00 46.39 3.18
1432 1446 3.149196 AGGCAACGATCATCTTTGTGTT 58.851 40.909 5.81 0.00 46.39 3.32
1433 1447 2.783135 AGGCAACGATCATCTTTGTGT 58.217 42.857 5.81 0.00 46.39 3.72
1434 1448 5.163723 ACAATAGGCAACGATCATCTTTGTG 60.164 40.000 5.81 0.00 46.39 3.33
1435 1449 4.943705 ACAATAGGCAACGATCATCTTTGT 59.056 37.500 5.81 0.00 46.39 2.83
1436 1450 5.490139 ACAATAGGCAACGATCATCTTTG 57.510 39.130 0.00 0.00 46.39 2.77
1437 1451 5.647658 TCAACAATAGGCAACGATCATCTTT 59.352 36.000 0.00 0.00 46.39 2.52
1438 1452 5.185454 TCAACAATAGGCAACGATCATCTT 58.815 37.500 0.00 0.00 46.39 2.40
1439 1453 4.769688 TCAACAATAGGCAACGATCATCT 58.230 39.130 0.00 0.00 46.39 2.90
1440 1454 5.484173 TTCAACAATAGGCAACGATCATC 57.516 39.130 0.00 0.00 46.39 2.92
1441 1455 5.163622 CCTTTCAACAATAGGCAACGATCAT 60.164 40.000 0.00 0.00 46.39 2.45
1442 1456 4.155826 CCTTTCAACAATAGGCAACGATCA 59.844 41.667 0.00 0.00 46.39 2.92
1443 1457 4.156008 ACCTTTCAACAATAGGCAACGATC 59.844 41.667 0.00 0.00 46.39 3.69
1444 1458 4.079253 ACCTTTCAACAATAGGCAACGAT 58.921 39.130 0.00 0.00 46.39 3.73
1445 1459 3.252215 CACCTTTCAACAATAGGCAACGA 59.748 43.478 0.00 0.00 46.39 3.85
1446 1460 3.252215 TCACCTTTCAACAATAGGCAACG 59.748 43.478 0.00 0.00 46.39 4.10
1447 1461 4.518970 TCTCACCTTTCAACAATAGGCAAC 59.481 41.667 0.00 0.00 32.08 4.17
1448 1462 4.724399 TCTCACCTTTCAACAATAGGCAA 58.276 39.130 0.00 0.00 32.08 4.52
1449 1463 4.365514 TCTCACCTTTCAACAATAGGCA 57.634 40.909 0.00 0.00 32.08 4.75
1450 1464 4.156739 CCTTCTCACCTTTCAACAATAGGC 59.843 45.833 0.00 0.00 32.08 3.93
1451 1465 4.702131 CCCTTCTCACCTTTCAACAATAGG 59.298 45.833 0.00 0.00 35.14 2.57
1452 1466 5.560724 TCCCTTCTCACCTTTCAACAATAG 58.439 41.667 0.00 0.00 0.00 1.73
1453 1467 5.576563 TCCCTTCTCACCTTTCAACAATA 57.423 39.130 0.00 0.00 0.00 1.90
1454 1468 4.453480 TCCCTTCTCACCTTTCAACAAT 57.547 40.909 0.00 0.00 0.00 2.71
1455 1469 3.943671 TCCCTTCTCACCTTTCAACAA 57.056 42.857 0.00 0.00 0.00 2.83
1456 1470 4.453480 AATCCCTTCTCACCTTTCAACA 57.547 40.909 0.00 0.00 0.00 3.33
1457 1471 4.021981 CCAAATCCCTTCTCACCTTTCAAC 60.022 45.833 0.00 0.00 0.00 3.18
1458 1472 4.151883 CCAAATCCCTTCTCACCTTTCAA 58.848 43.478 0.00 0.00 0.00 2.69
1459 1473 3.140144 ACCAAATCCCTTCTCACCTTTCA 59.860 43.478 0.00 0.00 0.00 2.69
1460 1474 3.507622 CACCAAATCCCTTCTCACCTTTC 59.492 47.826 0.00 0.00 0.00 2.62
1461 1475 3.140144 TCACCAAATCCCTTCTCACCTTT 59.860 43.478 0.00 0.00 0.00 3.11
1462 1476 2.716424 TCACCAAATCCCTTCTCACCTT 59.284 45.455 0.00 0.00 0.00 3.50
1463 1477 2.348472 TCACCAAATCCCTTCTCACCT 58.652 47.619 0.00 0.00 0.00 4.00
1464 1478 2.879103 TCACCAAATCCCTTCTCACC 57.121 50.000 0.00 0.00 0.00 4.02
1465 1479 5.946377 ACTATTTCACCAAATCCCTTCTCAC 59.054 40.000 0.00 0.00 33.95 3.51
1466 1480 6.139679 ACTATTTCACCAAATCCCTTCTCA 57.860 37.500 0.00 0.00 33.95 3.27
1467 1481 7.039714 ACAAACTATTTCACCAAATCCCTTCTC 60.040 37.037 0.00 0.00 33.95 2.87
1468 1482 6.782494 ACAAACTATTTCACCAAATCCCTTCT 59.218 34.615 0.00 0.00 33.95 2.85
1469 1483 6.993079 ACAAACTATTTCACCAAATCCCTTC 58.007 36.000 0.00 0.00 33.95 3.46
1470 1484 6.994421 ACAAACTATTTCACCAAATCCCTT 57.006 33.333 0.00 0.00 33.95 3.95
1471 1485 6.326323 ACAACAAACTATTTCACCAAATCCCT 59.674 34.615 0.00 0.00 33.95 4.20
1472 1486 6.521162 ACAACAAACTATTTCACCAAATCCC 58.479 36.000 0.00 0.00 33.95 3.85
1473 1487 9.705290 AATACAACAAACTATTTCACCAAATCC 57.295 29.630 0.00 0.00 33.95 3.01
1475 1489 8.987890 GCAATACAACAAACTATTTCACCAAAT 58.012 29.630 0.00 0.00 36.18 2.32
1476 1490 8.200792 AGCAATACAACAAACTATTTCACCAAA 58.799 29.630 0.00 0.00 0.00 3.28
1477 1491 7.721402 AGCAATACAACAAACTATTTCACCAA 58.279 30.769 0.00 0.00 0.00 3.67
1478 1492 7.283625 AGCAATACAACAAACTATTTCACCA 57.716 32.000 0.00 0.00 0.00 4.17
1479 1493 7.865385 TCAAGCAATACAACAAACTATTTCACC 59.135 33.333 0.00 0.00 0.00 4.02
1480 1494 8.795786 TCAAGCAATACAACAAACTATTTCAC 57.204 30.769 0.00 0.00 0.00 3.18
1481 1495 7.594758 GCTCAAGCAATACAACAAACTATTTCA 59.405 33.333 0.00 0.00 41.59 2.69
1482 1496 7.062255 GGCTCAAGCAATACAACAAACTATTTC 59.938 37.037 4.13 0.00 44.36 2.17
1483 1497 6.868339 GGCTCAAGCAATACAACAAACTATTT 59.132 34.615 4.13 0.00 44.36 1.40
1484 1498 6.209391 AGGCTCAAGCAATACAACAAACTATT 59.791 34.615 4.13 0.00 44.36 1.73
1485 1499 5.711976 AGGCTCAAGCAATACAACAAACTAT 59.288 36.000 4.13 0.00 44.36 2.12
1486 1500 5.070001 AGGCTCAAGCAATACAACAAACTA 58.930 37.500 4.13 0.00 44.36 2.24
1487 1501 3.891366 AGGCTCAAGCAATACAACAAACT 59.109 39.130 4.13 0.00 44.36 2.66
1488 1502 4.229876 GAGGCTCAAGCAATACAACAAAC 58.770 43.478 10.25 0.00 44.36 2.93
1489 1503 3.058293 CGAGGCTCAAGCAATACAACAAA 60.058 43.478 15.95 0.00 44.36 2.83
1490 1504 2.483877 CGAGGCTCAAGCAATACAACAA 59.516 45.455 15.95 0.00 44.36 2.83
1491 1505 2.076100 CGAGGCTCAAGCAATACAACA 58.924 47.619 15.95 0.00 44.36 3.33
1492 1506 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
1493 1507 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
1494 1508 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
1495 1509 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
1496 1510 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
1497 1511 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
1498 1512 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
1507 1521 3.096852 TCCTATATGTATGCCCACGAGG 58.903 50.000 0.00 0.00 39.47 4.63
1508 1522 3.764434 ACTCCTATATGTATGCCCACGAG 59.236 47.826 0.00 0.00 0.00 4.18
1509 1523 3.774734 ACTCCTATATGTATGCCCACGA 58.225 45.455 0.00 0.00 0.00 4.35
1510 1524 4.461431 TGTACTCCTATATGTATGCCCACG 59.539 45.833 0.00 0.00 0.00 4.94
1511 1525 5.995565 TGTACTCCTATATGTATGCCCAC 57.004 43.478 0.00 0.00 0.00 4.61
1512 1526 6.260663 TCATGTACTCCTATATGTATGCCCA 58.739 40.000 0.00 0.00 0.00 5.36
1513 1527 6.791867 TCATGTACTCCTATATGTATGCCC 57.208 41.667 0.00 0.00 0.00 5.36
1514 1528 8.243961 AGATCATGTACTCCTATATGTATGCC 57.756 38.462 0.00 0.00 0.00 4.40
1519 1533 9.249053 CCAAGTAGATCATGTACTCCTATATGT 57.751 37.037 0.00 0.00 30.11 2.29
1520 1534 9.467796 TCCAAGTAGATCATGTACTCCTATATG 57.532 37.037 0.00 0.00 30.11 1.78
1521 1535 9.693739 CTCCAAGTAGATCATGTACTCCTATAT 57.306 37.037 0.00 0.00 30.11 0.86
1522 1536 8.670490 ACTCCAAGTAGATCATGTACTCCTATA 58.330 37.037 0.00 0.00 30.11 1.31
1523 1537 7.531317 ACTCCAAGTAGATCATGTACTCCTAT 58.469 38.462 0.00 0.00 30.11 2.57
1524 1538 6.912426 ACTCCAAGTAGATCATGTACTCCTA 58.088 40.000 0.00 0.00 30.11 2.94
1525 1539 5.772004 ACTCCAAGTAGATCATGTACTCCT 58.228 41.667 0.00 0.00 30.11 3.69
1526 1540 6.546403 TGTACTCCAAGTAGATCATGTACTCC 59.454 42.308 0.00 0.00 30.12 3.85
1527 1541 7.569639 TGTACTCCAAGTAGATCATGTACTC 57.430 40.000 0.00 0.00 30.12 2.59
1528 1542 7.956328 TTGTACTCCAAGTAGATCATGTACT 57.044 36.000 0.00 0.00 30.12 2.73
1542 1556 0.476338 TGGCTTGCCTTGTACTCCAA 59.524 50.000 13.18 0.00 0.00 3.53
1543 1557 0.036732 CTGGCTTGCCTTGTACTCCA 59.963 55.000 13.18 0.00 0.00 3.86
1544 1558 0.324943 TCTGGCTTGCCTTGTACTCC 59.675 55.000 13.18 0.00 0.00 3.85
1545 1559 2.185004 TTCTGGCTTGCCTTGTACTC 57.815 50.000 13.18 0.00 0.00 2.59
1546 1560 2.887151 ATTCTGGCTTGCCTTGTACT 57.113 45.000 13.18 0.00 0.00 2.73
1547 1561 5.450550 GGAAATATTCTGGCTTGCCTTGTAC 60.451 44.000 13.18 0.00 0.00 2.90
1548 1562 4.644685 GGAAATATTCTGGCTTGCCTTGTA 59.355 41.667 13.18 0.81 0.00 2.41
1549 1563 3.448660 GGAAATATTCTGGCTTGCCTTGT 59.551 43.478 13.18 0.00 0.00 3.16
1550 1564 3.703052 AGGAAATATTCTGGCTTGCCTTG 59.297 43.478 13.18 6.10 0.00 3.61
1551 1565 3.986435 AGGAAATATTCTGGCTTGCCTT 58.014 40.909 13.18 0.00 0.00 4.35
1552 1566 3.677156 AGGAAATATTCTGGCTTGCCT 57.323 42.857 13.18 0.00 0.00 4.75
1553 1567 4.464947 ACTAGGAAATATTCTGGCTTGCC 58.535 43.478 4.43 4.43 0.00 4.52
1554 1568 5.372373 AGACTAGGAAATATTCTGGCTTGC 58.628 41.667 0.00 0.00 0.00 4.01
1555 1569 7.987458 TGTTAGACTAGGAAATATTCTGGCTTG 59.013 37.037 0.00 0.00 0.00 4.01
1556 1570 8.090788 TGTTAGACTAGGAAATATTCTGGCTT 57.909 34.615 0.00 0.00 0.00 4.35
1557 1571 7.676683 TGTTAGACTAGGAAATATTCTGGCT 57.323 36.000 0.00 0.00 0.00 4.75
1578 1592 9.391006 ACGTGATTGTATTAGGAAACATATGTT 57.609 29.630 15.47 15.47 40.50 2.71
1579 1593 8.958119 ACGTGATTGTATTAGGAAACATATGT 57.042 30.769 1.41 1.41 0.00 2.29
1583 1597 9.095065 GAGTAACGTGATTGTATTAGGAAACAT 57.905 33.333 0.00 0.00 0.00 2.71
1584 1598 8.089597 TGAGTAACGTGATTGTATTAGGAAACA 58.910 33.333 0.00 0.00 0.00 2.83
1585 1599 8.470040 TGAGTAACGTGATTGTATTAGGAAAC 57.530 34.615 0.00 0.00 0.00 2.78
1586 1600 8.928733 GTTGAGTAACGTGATTGTATTAGGAAA 58.071 33.333 0.00 0.00 0.00 3.13
1587 1601 8.089597 TGTTGAGTAACGTGATTGTATTAGGAA 58.910 33.333 0.00 0.00 39.71 3.36
1588 1602 7.604549 TGTTGAGTAACGTGATTGTATTAGGA 58.395 34.615 0.00 0.00 39.71 2.94
1589 1603 7.821595 TGTTGAGTAACGTGATTGTATTAGG 57.178 36.000 0.00 0.00 39.71 2.69
1590 1604 8.540492 GGATGTTGAGTAACGTGATTGTATTAG 58.460 37.037 0.00 0.00 39.71 1.73
1591 1605 7.493320 GGGATGTTGAGTAACGTGATTGTATTA 59.507 37.037 0.00 0.00 39.71 0.98
1592 1606 6.315393 GGGATGTTGAGTAACGTGATTGTATT 59.685 38.462 0.00 0.00 39.71 1.89
1593 1607 5.815740 GGGATGTTGAGTAACGTGATTGTAT 59.184 40.000 0.00 0.00 39.71 2.29
1594 1608 5.172934 GGGATGTTGAGTAACGTGATTGTA 58.827 41.667 0.00 0.00 39.71 2.41
1595 1609 4.000988 GGGATGTTGAGTAACGTGATTGT 58.999 43.478 0.00 0.00 39.71 2.71
1596 1610 3.374058 GGGGATGTTGAGTAACGTGATTG 59.626 47.826 0.00 0.00 39.71 2.67
1597 1611 3.606687 GGGGATGTTGAGTAACGTGATT 58.393 45.455 0.00 0.00 39.71 2.57
1598 1612 2.093128 GGGGGATGTTGAGTAACGTGAT 60.093 50.000 0.00 0.00 39.71 3.06
1599 1613 1.276989 GGGGGATGTTGAGTAACGTGA 59.723 52.381 0.00 0.00 39.71 4.35
1600 1614 1.734163 GGGGGATGTTGAGTAACGTG 58.266 55.000 0.00 0.00 39.71 4.49
1601 1615 0.248289 CGGGGGATGTTGAGTAACGT 59.752 55.000 0.00 0.00 39.71 3.99
1602 1616 1.087771 GCGGGGGATGTTGAGTAACG 61.088 60.000 0.00 0.00 39.71 3.18
1603 1617 0.035820 TGCGGGGGATGTTGAGTAAC 60.036 55.000 0.00 0.00 37.32 2.50
1604 1618 0.251916 CTGCGGGGGATGTTGAGTAA 59.748 55.000 0.00 0.00 0.00 2.24
1605 1619 0.907704 ACTGCGGGGGATGTTGAGTA 60.908 55.000 0.00 0.00 0.00 2.59
1606 1620 2.185310 GACTGCGGGGGATGTTGAGT 62.185 60.000 0.00 0.00 0.00 3.41
1607 1621 1.450312 GACTGCGGGGGATGTTGAG 60.450 63.158 0.00 0.00 0.00 3.02
1608 1622 2.220586 TGACTGCGGGGGATGTTGA 61.221 57.895 0.00 0.00 0.00 3.18
1609 1623 2.040544 GTGACTGCGGGGGATGTTG 61.041 63.158 0.00 0.00 0.00 3.33
1610 1624 2.063015 TTGTGACTGCGGGGGATGTT 62.063 55.000 0.00 0.00 0.00 2.71
1611 1625 2.525124 TTGTGACTGCGGGGGATGT 61.525 57.895 0.00 0.00 0.00 3.06
1612 1626 2.040544 GTTGTGACTGCGGGGGATG 61.041 63.158 0.00 0.00 0.00 3.51
1613 1627 2.351276 GTTGTGACTGCGGGGGAT 59.649 61.111 0.00 0.00 0.00 3.85
1614 1628 4.308458 CGTTGTGACTGCGGGGGA 62.308 66.667 0.00 0.00 0.00 4.81
1619 1633 2.716828 CGCTACCGTTGTGACTGCG 61.717 63.158 0.00 0.00 36.19 5.18
1620 1634 1.372499 TCGCTACCGTTGTGACTGC 60.372 57.895 0.00 0.00 35.54 4.40
1621 1635 1.334992 CGTCGCTACCGTTGTGACTG 61.335 60.000 19.68 12.04 41.26 3.51
1622 1636 1.081641 CGTCGCTACCGTTGTGACT 60.082 57.895 19.68 0.00 41.26 3.41
1623 1637 2.713894 GCGTCGCTACCGTTGTGAC 61.714 63.158 10.68 14.36 40.38 3.67
1624 1638 2.429571 GCGTCGCTACCGTTGTGA 60.430 61.111 10.68 0.00 35.54 3.58
1625 1639 3.823421 CGCGTCGCTACCGTTGTG 61.823 66.667 16.36 0.00 35.54 3.33
1627 1641 4.764336 TCCGCGTCGCTACCGTTG 62.764 66.667 16.36 0.00 35.54 4.10
1628 1642 4.766088 GTCCGCGTCGCTACCGTT 62.766 66.667 16.36 0.00 35.54 4.44
1637 1651 3.735029 AGTCTCACCGTCCGCGTC 61.735 66.667 4.92 0.00 36.15 5.19
1638 1652 4.039357 CAGTCTCACCGTCCGCGT 62.039 66.667 4.92 0.00 36.15 6.01
1639 1653 4.778415 CCAGTCTCACCGTCCGCG 62.778 72.222 0.00 0.00 37.95 6.46
1640 1654 3.343788 CTCCAGTCTCACCGTCCGC 62.344 68.421 0.00 0.00 0.00 5.54
1641 1655 1.241990 TTCTCCAGTCTCACCGTCCG 61.242 60.000 0.00 0.00 0.00 4.79
1642 1656 0.528470 CTTCTCCAGTCTCACCGTCC 59.472 60.000 0.00 0.00 0.00 4.79
1643 1657 1.535833 TCTTCTCCAGTCTCACCGTC 58.464 55.000 0.00 0.00 0.00 4.79
1644 1658 1.996798 TTCTTCTCCAGTCTCACCGT 58.003 50.000 0.00 0.00 0.00 4.83
1645 1659 2.159170 GGATTCTTCTCCAGTCTCACCG 60.159 54.545 0.00 0.00 35.24 4.94
1646 1660 2.159170 CGGATTCTTCTCCAGTCTCACC 60.159 54.545 0.00 0.00 34.78 4.02
1647 1661 2.755655 TCGGATTCTTCTCCAGTCTCAC 59.244 50.000 0.00 0.00 34.78 3.51
1648 1662 3.087370 TCGGATTCTTCTCCAGTCTCA 57.913 47.619 0.00 0.00 34.78 3.27
1649 1663 3.181480 CCTTCGGATTCTTCTCCAGTCTC 60.181 52.174 0.00 0.00 34.78 3.36
1650 1664 2.763448 CCTTCGGATTCTTCTCCAGTCT 59.237 50.000 0.00 0.00 34.78 3.24
1651 1665 2.740256 GCCTTCGGATTCTTCTCCAGTC 60.740 54.545 0.00 0.00 34.78 3.51
1652 1666 1.208293 GCCTTCGGATTCTTCTCCAGT 59.792 52.381 0.00 0.00 34.78 4.00
1653 1667 1.208052 TGCCTTCGGATTCTTCTCCAG 59.792 52.381 0.00 0.00 34.78 3.86
1654 1668 1.275666 TGCCTTCGGATTCTTCTCCA 58.724 50.000 0.00 0.00 34.78 3.86
1655 1669 2.284190 CTTGCCTTCGGATTCTTCTCC 58.716 52.381 0.00 0.00 0.00 3.71
1656 1670 1.668237 GCTTGCCTTCGGATTCTTCTC 59.332 52.381 0.00 0.00 0.00 2.87
1657 1671 1.280421 AGCTTGCCTTCGGATTCTTCT 59.720 47.619 0.00 0.00 0.00 2.85
1658 1672 1.399791 CAGCTTGCCTTCGGATTCTTC 59.600 52.381 0.00 0.00 0.00 2.87
1659 1673 1.003580 TCAGCTTGCCTTCGGATTCTT 59.996 47.619 0.00 0.00 0.00 2.52
1660 1674 0.615331 TCAGCTTGCCTTCGGATTCT 59.385 50.000 0.00 0.00 0.00 2.40
1661 1675 0.729690 GTCAGCTTGCCTTCGGATTC 59.270 55.000 0.00 0.00 0.00 2.52
1662 1676 1.021390 CGTCAGCTTGCCTTCGGATT 61.021 55.000 0.00 0.00 0.00 3.01
1663 1677 1.448540 CGTCAGCTTGCCTTCGGAT 60.449 57.895 0.00 0.00 0.00 4.18
1664 1678 2.048222 CGTCAGCTTGCCTTCGGA 60.048 61.111 0.00 0.00 0.00 4.55
1665 1679 1.667830 TTCGTCAGCTTGCCTTCGG 60.668 57.895 0.00 0.00 0.00 4.30
1666 1680 1.221466 TGTTCGTCAGCTTGCCTTCG 61.221 55.000 0.00 0.00 0.00 3.79
1667 1681 0.235926 GTGTTCGTCAGCTTGCCTTC 59.764 55.000 0.00 0.00 0.00 3.46
1668 1682 1.166531 GGTGTTCGTCAGCTTGCCTT 61.167 55.000 0.00 0.00 40.87 4.35
1669 1683 1.598130 GGTGTTCGTCAGCTTGCCT 60.598 57.895 0.00 0.00 40.87 4.75
1670 1684 2.617274 GGGTGTTCGTCAGCTTGCC 61.617 63.158 10.85 0.00 43.26 4.52
1671 1685 2.617274 GGGGTGTTCGTCAGCTTGC 61.617 63.158 10.85 0.00 43.26 4.01
1672 1686 1.966451 GGGGGTGTTCGTCAGCTTG 60.966 63.158 10.85 0.00 43.26 4.01
1673 1687 2.430367 GGGGGTGTTCGTCAGCTT 59.570 61.111 10.85 0.00 43.26 3.74
1687 1701 2.263540 CCGTTACGACTGTGGGGG 59.736 66.667 6.24 0.00 0.00 5.40
1688 1702 1.080298 GACCGTTACGACTGTGGGG 60.080 63.158 6.24 0.00 0.00 4.96
1689 1703 1.443194 CGACCGTTACGACTGTGGG 60.443 63.158 6.24 0.00 0.00 4.61
1690 1704 1.575922 TCGACCGTTACGACTGTGG 59.424 57.895 6.24 0.00 34.85 4.17
1696 1710 1.226101 GATGCGTCGACCGTTACGA 60.226 57.895 10.58 0.00 41.55 3.43
1697 1711 3.282740 GATGCGTCGACCGTTACG 58.717 61.111 10.58 0.00 41.92 3.18
1707 1721 2.202492 ACGACTCTGCGATGCGTC 60.202 61.111 0.00 0.00 34.83 5.19
1708 1722 2.504899 CACGACTCTGCGATGCGT 60.505 61.111 0.00 0.00 35.33 5.24
1709 1723 3.250323 CCACGACTCTGCGATGCG 61.250 66.667 0.00 0.00 34.83 4.73
1710 1724 3.558411 GCCACGACTCTGCGATGC 61.558 66.667 0.00 0.00 34.83 3.91
1711 1725 2.163390 CAGCCACGACTCTGCGATG 61.163 63.158 0.00 0.00 34.83 3.84
1712 1726 2.182791 CAGCCACGACTCTGCGAT 59.817 61.111 0.00 0.00 34.83 4.58
1713 1727 4.056125 CCAGCCACGACTCTGCGA 62.056 66.667 0.00 0.00 34.83 5.10
1714 1728 3.978723 CTCCAGCCACGACTCTGCG 62.979 68.421 0.00 0.00 37.29 5.18
1715 1729 2.125753 CTCCAGCCACGACTCTGC 60.126 66.667 0.00 0.00 0.00 4.26
1716 1730 1.080230 CACTCCAGCCACGACTCTG 60.080 63.158 0.00 0.00 0.00 3.35
1717 1731 2.279069 CCACTCCAGCCACGACTCT 61.279 63.158 0.00 0.00 0.00 3.24
1718 1732 2.262915 CCACTCCAGCCACGACTC 59.737 66.667 0.00 0.00 0.00 3.36
1719 1733 4.008933 GCCACTCCAGCCACGACT 62.009 66.667 0.00 0.00 0.00 4.18
1720 1734 3.825160 TTGCCACTCCAGCCACGAC 62.825 63.158 0.00 0.00 0.00 4.34
1721 1735 3.555324 TTGCCACTCCAGCCACGA 61.555 61.111 0.00 0.00 0.00 4.35
1722 1736 3.357079 GTTGCCACTCCAGCCACG 61.357 66.667 0.00 0.00 0.00 4.94
1723 1737 2.985847 GGTTGCCACTCCAGCCAC 60.986 66.667 0.00 0.00 36.27 5.01
1724 1738 4.641645 CGGTTGCCACTCCAGCCA 62.642 66.667 0.00 0.00 36.03 4.75
1725 1739 4.329545 TCGGTTGCCACTCCAGCC 62.330 66.667 0.00 0.00 33.28 4.85
1726 1740 3.050275 GTCGGTTGCCACTCCAGC 61.050 66.667 0.00 0.00 0.00 4.85
1727 1741 2.738521 CGTCGGTTGCCACTCCAG 60.739 66.667 0.00 0.00 0.00 3.86
1728 1742 3.220999 CTCGTCGGTTGCCACTCCA 62.221 63.158 0.00 0.00 0.00 3.86
1729 1743 2.227089 ATCTCGTCGGTTGCCACTCC 62.227 60.000 0.00 0.00 0.00 3.85
1730 1744 0.389948 AATCTCGTCGGTTGCCACTC 60.390 55.000 0.00 0.00 0.00 3.51
1731 1745 0.670546 CAATCTCGTCGGTTGCCACT 60.671 55.000 0.00 0.00 0.00 4.00
1732 1746 1.787847 CAATCTCGTCGGTTGCCAC 59.212 57.895 0.00 0.00 0.00 5.01
1733 1747 2.032634 GCAATCTCGTCGGTTGCCA 61.033 57.895 15.37 0.00 41.67 4.92
1734 1748 2.785258 GCAATCTCGTCGGTTGCC 59.215 61.111 15.37 3.64 41.67 4.52
1735 1749 1.014044 TGAGCAATCTCGTCGGTTGC 61.014 55.000 17.33 17.33 46.37 4.17
1736 1750 1.391485 CTTGAGCAATCTCGTCGGTTG 59.609 52.381 0.00 0.00 42.26 3.77
1737 1751 1.714794 CTTGAGCAATCTCGTCGGTT 58.285 50.000 0.00 0.00 42.26 4.44
1738 1752 0.737715 GCTTGAGCAATCTCGTCGGT 60.738 55.000 0.00 0.00 42.26 4.69
1739 1753 2.002127 GCTTGAGCAATCTCGTCGG 58.998 57.895 0.00 0.00 42.26 4.79
1750 1764 1.362406 GACTACCGCCTTGCTTGAGC 61.362 60.000 0.00 0.00 42.50 4.26
1751 1765 0.741221 GGACTACCGCCTTGCTTGAG 60.741 60.000 0.00 0.00 0.00 3.02
1752 1766 1.192146 AGGACTACCGCCTTGCTTGA 61.192 55.000 0.00 0.00 41.83 3.02
1753 1767 0.321653 AAGGACTACCGCCTTGCTTG 60.322 55.000 0.00 0.00 43.84 4.01
1754 1768 0.400594 AAAGGACTACCGCCTTGCTT 59.599 50.000 0.00 0.00 44.72 3.91
1755 1769 0.321653 CAAAGGACTACCGCCTTGCT 60.322 55.000 0.00 0.00 44.72 3.91
1756 1770 0.605589 ACAAAGGACTACCGCCTTGC 60.606 55.000 0.00 0.00 44.72 4.01
1757 1771 1.156736 CACAAAGGACTACCGCCTTG 58.843 55.000 0.00 0.00 44.72 3.61
1759 1773 1.003718 GCACAAAGGACTACCGCCT 60.004 57.895 0.00 0.00 41.83 5.52
1760 1774 2.038837 GGCACAAAGGACTACCGCC 61.039 63.158 0.00 0.00 41.83 6.13
1761 1775 2.388232 CGGCACAAAGGACTACCGC 61.388 63.158 0.00 0.00 41.83 5.68
1762 1776 0.601841 AACGGCACAAAGGACTACCG 60.602 55.000 0.00 0.00 45.86 4.02
1763 1777 1.265905 CAAACGGCACAAAGGACTACC 59.734 52.381 0.00 0.00 0.00 3.18
1764 1778 1.944709 ACAAACGGCACAAAGGACTAC 59.055 47.619 0.00 0.00 0.00 2.73
1765 1779 2.215196 GACAAACGGCACAAAGGACTA 58.785 47.619 0.00 0.00 0.00 2.59
1766 1780 1.021968 GACAAACGGCACAAAGGACT 58.978 50.000 0.00 0.00 0.00 3.85
1767 1781 0.316689 CGACAAACGGCACAAAGGAC 60.317 55.000 0.00 0.00 38.46 3.85
1768 1782 0.462225 TCGACAAACGGCACAAAGGA 60.462 50.000 0.00 0.00 42.82 3.36
1769 1783 0.041312 CTCGACAAACGGCACAAAGG 60.041 55.000 0.00 0.00 42.82 3.11
1770 1784 0.041312 CCTCGACAAACGGCACAAAG 60.041 55.000 0.00 0.00 42.82 2.77
1771 1785 0.745128 ACCTCGACAAACGGCACAAA 60.745 50.000 0.00 0.00 42.82 2.83
1772 1786 0.104487 TACCTCGACAAACGGCACAA 59.896 50.000 0.00 0.00 42.82 3.33
1773 1787 0.319211 CTACCTCGACAAACGGCACA 60.319 55.000 0.00 0.00 42.82 4.57
1774 1788 1.623973 GCTACCTCGACAAACGGCAC 61.624 60.000 0.00 0.00 42.82 5.01
1775 1789 1.373748 GCTACCTCGACAAACGGCA 60.374 57.895 0.00 0.00 42.82 5.69
1776 1790 2.098831 GGCTACCTCGACAAACGGC 61.099 63.158 0.00 0.00 42.82 5.68
1777 1791 1.804326 CGGCTACCTCGACAAACGG 60.804 63.158 0.00 0.00 42.82 4.44
1778 1792 0.797249 CTCGGCTACCTCGACAAACG 60.797 60.000 0.00 0.00 44.09 3.60
1779 1793 0.524862 TCTCGGCTACCTCGACAAAC 59.475 55.000 0.00 0.00 32.86 2.93
1780 1794 0.809385 CTCTCGGCTACCTCGACAAA 59.191 55.000 0.00 0.00 32.86 2.83
1781 1795 1.654954 GCTCTCGGCTACCTCGACAA 61.655 60.000 0.00 0.00 38.06 3.18
1782 1796 2.113433 GCTCTCGGCTACCTCGACA 61.113 63.158 0.00 0.00 38.06 4.35
1783 1797 2.716864 GCTCTCGGCTACCTCGAC 59.283 66.667 0.00 0.00 38.06 4.20
1784 1798 2.895865 CGCTCTCGGCTACCTCGA 60.896 66.667 0.00 0.00 39.13 4.04
1785 1799 3.203412 ACGCTCTCGGCTACCTCG 61.203 66.667 0.00 0.00 40.69 4.63
1786 1800 2.409651 CACGCTCTCGGCTACCTC 59.590 66.667 0.00 0.00 40.69 3.85
1787 1801 3.141488 CCACGCTCTCGGCTACCT 61.141 66.667 0.00 0.00 40.69 3.08
1788 1802 4.208686 CCCACGCTCTCGGCTACC 62.209 72.222 0.00 0.00 40.69 3.18
1789 1803 3.450115 ACCCACGCTCTCGGCTAC 61.450 66.667 0.00 0.00 40.69 3.58
1790 1804 3.449227 CACCCACGCTCTCGGCTA 61.449 66.667 0.00 0.00 40.69 3.93
1792 1806 4.148825 ATCACCCACGCTCTCGGC 62.149 66.667 0.00 0.00 40.69 5.54
1793 1807 2.202797 CATCACCCACGCTCTCGG 60.203 66.667 0.00 0.00 40.69 4.63
1794 1808 2.202797 CCATCACCCACGCTCTCG 60.203 66.667 0.00 0.00 42.43 4.04
1795 1809 1.142748 CTCCATCACCCACGCTCTC 59.857 63.158 0.00 0.00 0.00 3.20
1796 1810 3.023949 GCTCCATCACCCACGCTCT 62.024 63.158 0.00 0.00 0.00 4.09
1797 1811 2.512515 GCTCCATCACCCACGCTC 60.513 66.667 0.00 0.00 0.00 5.03
1798 1812 4.101448 GGCTCCATCACCCACGCT 62.101 66.667 0.00 0.00 0.00 5.07
1800 1814 4.082523 ACGGCTCCATCACCCACG 62.083 66.667 0.00 0.00 0.00 4.94
1801 1815 2.436646 CACGGCTCCATCACCCAC 60.437 66.667 0.00 0.00 0.00 4.61
1802 1816 3.716195 CCACGGCTCCATCACCCA 61.716 66.667 0.00 0.00 0.00 4.51
1803 1817 4.489771 CCCACGGCTCCATCACCC 62.490 72.222 0.00 0.00 0.00 4.61
1915 1929 3.338126 CTTCGGGCTGTAGCGTCGT 62.338 63.158 14.45 0.00 43.26 4.34
2309 2324 2.354891 TACGCCGTGTGACCAACG 60.355 61.111 0.00 0.00 40.70 4.10
2312 2327 1.214325 CATCTACGCCGTGTGACCA 59.786 57.895 0.00 0.00 0.00 4.02
2317 2332 2.494918 GCCTCATCTACGCCGTGT 59.505 61.111 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.