Multiple sequence alignment - TraesCS2D01G242800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G242800 chr2D 100.000 2162 0 0 1 2162 272563444 272565605 0.000000e+00 3993
1 TraesCS2D01G242800 chr2D 99.388 654 4 0 227 880 591984645 591985298 0.000000e+00 1186
2 TraesCS2D01G242800 chr5D 99.048 1261 12 0 902 2162 503218608 503219868 0.000000e+00 2263
3 TraesCS2D01G242800 chr5D 98.731 1261 16 0 902 2162 503277836 503276576 0.000000e+00 2241
4 TraesCS2D01G242800 chr5D 99.239 657 5 0 227 883 503245308 503245964 0.000000e+00 1186
5 TraesCS2D01G242800 chr5D 99.567 231 0 1 1 231 188327261 188327490 9.230000e-114 420
6 TraesCS2D01G242800 chr3B 99.048 1261 12 0 902 2162 201527414 201528674 0.000000e+00 2263
7 TraesCS2D01G242800 chr3B 99.391 657 4 0 227 883 201539558 201540214 0.000000e+00 1192
8 TraesCS2D01G242800 chr1A 98.969 1261 13 0 902 2162 554512638 554513898 0.000000e+00 2257
9 TraesCS2D01G242800 chr3D 98.810 1261 14 1 902 2162 589279154 589277895 0.000000e+00 2244
10 TraesCS2D01G242800 chr3D 99.391 657 4 0 227 883 589263490 589262834 0.000000e+00 1192
11 TraesCS2D01G242800 chr3D 100.000 230 0 0 1 230 242230937 242231166 1.980000e-115 425
12 TraesCS2D01G242800 chr3D 100.000 229 0 0 1 229 242867230 242867458 7.130000e-115 424
13 TraesCS2D01G242800 chr3D 100.000 229 0 0 1 229 243964411 243964639 7.130000e-115 424
14 TraesCS2D01G242800 chr3D 99.145 234 2 0 1 234 241896837 241896604 2.570000e-114 422
15 TraesCS2D01G242800 chrUn 98.731 1261 16 0 902 2162 346596104 346594844 0.000000e+00 2241
16 TraesCS2D01G242800 chrUn 99.569 232 0 1 1 231 154334000 154334231 2.570000e-114 422
17 TraesCS2D01G242800 chr6D 98.652 1261 17 0 902 2162 168255316 168256576 0.000000e+00 2235
18 TraesCS2D01G242800 chr6D 99.239 657 5 0 227 883 389245786 389245130 0.000000e+00 1186
19 TraesCS2D01G242800 chr3A 98.493 1261 18 1 902 2162 672909617 672908358 0.000000e+00 2222
20 TraesCS2D01G242800 chr3A 99.239 657 5 0 227 883 122226449 122227105 0.000000e+00 1186
21 TraesCS2D01G242800 chr1D 98.493 1261 18 1 902 2162 254397719 254396460 0.000000e+00 2222
22 TraesCS2D01G242800 chr1D 99.567 231 1 0 1 231 173597945 173598175 2.570000e-114 422
23 TraesCS2D01G242800 chr7B 99.391 657 4 0 227 883 662726440 662727096 0.000000e+00 1192
24 TraesCS2D01G242800 chr7D 99.239 657 5 0 227 883 231554390 231553734 0.000000e+00 1186
25 TraesCS2D01G242800 chr5B 99.239 657 5 0 227 883 127807376 127808032 0.000000e+00 1186
26 TraesCS2D01G242800 chr4D 98.734 237 3 0 1 237 209425797 209426033 2.570000e-114 422
27 TraesCS2D01G242800 chr4D 99.149 235 0 2 1 235 210263081 210263313 2.570000e-114 422


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G242800 chr2D 272563444 272565605 2161 False 3993 3993 100.000 1 2162 1 chr2D.!!$F1 2161
1 TraesCS2D01G242800 chr2D 591984645 591985298 653 False 1186 1186 99.388 227 880 1 chr2D.!!$F2 653
2 TraesCS2D01G242800 chr5D 503218608 503219868 1260 False 2263 2263 99.048 902 2162 1 chr5D.!!$F2 1260
3 TraesCS2D01G242800 chr5D 503276576 503277836 1260 True 2241 2241 98.731 902 2162 1 chr5D.!!$R1 1260
4 TraesCS2D01G242800 chr5D 503245308 503245964 656 False 1186 1186 99.239 227 883 1 chr5D.!!$F3 656
5 TraesCS2D01G242800 chr3B 201527414 201528674 1260 False 2263 2263 99.048 902 2162 1 chr3B.!!$F1 1260
6 TraesCS2D01G242800 chr3B 201539558 201540214 656 False 1192 1192 99.391 227 883 1 chr3B.!!$F2 656
7 TraesCS2D01G242800 chr1A 554512638 554513898 1260 False 2257 2257 98.969 902 2162 1 chr1A.!!$F1 1260
8 TraesCS2D01G242800 chr3D 589277895 589279154 1259 True 2244 2244 98.810 902 2162 1 chr3D.!!$R3 1260
9 TraesCS2D01G242800 chr3D 589262834 589263490 656 True 1192 1192 99.391 227 883 1 chr3D.!!$R2 656
10 TraesCS2D01G242800 chrUn 346594844 346596104 1260 True 2241 2241 98.731 902 2162 1 chrUn.!!$R1 1260
11 TraesCS2D01G242800 chr6D 168255316 168256576 1260 False 2235 2235 98.652 902 2162 1 chr6D.!!$F1 1260
12 TraesCS2D01G242800 chr6D 389245130 389245786 656 True 1186 1186 99.239 227 883 1 chr6D.!!$R1 656
13 TraesCS2D01G242800 chr3A 672908358 672909617 1259 True 2222 2222 98.493 902 2162 1 chr3A.!!$R1 1260
14 TraesCS2D01G242800 chr3A 122226449 122227105 656 False 1186 1186 99.239 227 883 1 chr3A.!!$F1 656
15 TraesCS2D01G242800 chr1D 254396460 254397719 1259 True 2222 2222 98.493 902 2162 1 chr1D.!!$R1 1260
16 TraesCS2D01G242800 chr7B 662726440 662727096 656 False 1192 1192 99.391 227 883 1 chr7B.!!$F1 656
17 TraesCS2D01G242800 chr7D 231553734 231554390 656 True 1186 1186 99.239 227 883 1 chr7D.!!$R1 656
18 TraesCS2D01G242800 chr5B 127807376 127808032 656 False 1186 1186 99.239 227 883 1 chr5B.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.169230 AATTTAATTGGCGTGCGCGA 59.831 45.0 26.19 2.13 43.06 5.87 F
154 155 0.248054 ATTTAATTGGCGTGCGCGAG 60.248 50.0 26.19 0.19 43.06 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1011 1012 4.448395 CGTTGTGGTAAAGGTCGTAATTCA 59.552 41.667 0.0 0.0 0.00 2.57 R
1804 1806 5.067273 TCAATTCGAGGATCTAGAGAGGTC 58.933 45.833 0.0 0.0 31.27 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.572985 CTTGTTCTTGCTCCAATGTTCA 57.427 40.909 0.00 0.00 0.00 3.18
22 23 5.130292 CTTGTTCTTGCTCCAATGTTCAT 57.870 39.130 0.00 0.00 0.00 2.57
23 24 4.771590 TGTTCTTGCTCCAATGTTCATC 57.228 40.909 0.00 0.00 0.00 2.92
24 25 3.507233 TGTTCTTGCTCCAATGTTCATCC 59.493 43.478 0.00 0.00 0.00 3.51
25 26 3.726557 TCTTGCTCCAATGTTCATCCT 57.273 42.857 0.00 0.00 0.00 3.24
26 27 4.038271 TCTTGCTCCAATGTTCATCCTT 57.962 40.909 0.00 0.00 0.00 3.36
27 28 4.012374 TCTTGCTCCAATGTTCATCCTTC 58.988 43.478 0.00 0.00 0.00 3.46
28 29 3.726557 TGCTCCAATGTTCATCCTTCT 57.273 42.857 0.00 0.00 0.00 2.85
29 30 3.614092 TGCTCCAATGTTCATCCTTCTC 58.386 45.455 0.00 0.00 0.00 2.87
30 31 3.009363 TGCTCCAATGTTCATCCTTCTCA 59.991 43.478 0.00 0.00 0.00 3.27
31 32 4.012374 GCTCCAATGTTCATCCTTCTCAA 58.988 43.478 0.00 0.00 0.00 3.02
32 33 4.460382 GCTCCAATGTTCATCCTTCTCAAA 59.540 41.667 0.00 0.00 0.00 2.69
33 34 5.392811 GCTCCAATGTTCATCCTTCTCAAAG 60.393 44.000 0.00 0.00 0.00 2.77
34 35 4.460382 TCCAATGTTCATCCTTCTCAAAGC 59.540 41.667 0.00 0.00 0.00 3.51
35 36 4.461781 CCAATGTTCATCCTTCTCAAAGCT 59.538 41.667 0.00 0.00 0.00 3.74
36 37 5.649395 CCAATGTTCATCCTTCTCAAAGCTA 59.351 40.000 0.00 0.00 0.00 3.32
37 38 6.183360 CCAATGTTCATCCTTCTCAAAGCTAG 60.183 42.308 0.00 0.00 0.00 3.42
38 39 4.836825 TGTTCATCCTTCTCAAAGCTAGG 58.163 43.478 0.00 0.00 0.00 3.02
39 40 3.550437 TCATCCTTCTCAAAGCTAGGC 57.450 47.619 0.00 0.00 0.00 3.93
40 41 2.171448 TCATCCTTCTCAAAGCTAGGCC 59.829 50.000 0.00 0.00 0.00 5.19
41 42 0.912486 TCCTTCTCAAAGCTAGGCCC 59.088 55.000 0.00 0.00 0.00 5.80
42 43 0.915364 CCTTCTCAAAGCTAGGCCCT 59.085 55.000 0.00 0.00 0.00 5.19
43 44 1.283321 CCTTCTCAAAGCTAGGCCCTT 59.717 52.381 0.00 0.00 0.00 3.95
44 45 2.637947 CTTCTCAAAGCTAGGCCCTTC 58.362 52.381 0.00 0.00 0.00 3.46
45 46 1.656587 TCTCAAAGCTAGGCCCTTCA 58.343 50.000 0.00 0.00 0.00 3.02
46 47 2.200081 TCTCAAAGCTAGGCCCTTCAT 58.800 47.619 0.00 0.00 0.00 2.57
47 48 2.578021 TCTCAAAGCTAGGCCCTTCATT 59.422 45.455 0.00 0.00 0.00 2.57
48 49 3.010584 TCTCAAAGCTAGGCCCTTCATTT 59.989 43.478 0.00 0.00 0.00 2.32
49 50 3.091545 TCAAAGCTAGGCCCTTCATTTG 58.908 45.455 0.00 5.41 0.00 2.32
50 51 2.827921 CAAAGCTAGGCCCTTCATTTGT 59.172 45.455 0.00 0.00 0.00 2.83
51 52 4.016444 CAAAGCTAGGCCCTTCATTTGTA 58.984 43.478 0.00 0.00 0.00 2.41
52 53 4.316025 AAGCTAGGCCCTTCATTTGTAA 57.684 40.909 0.00 0.00 0.00 2.41
53 54 3.891049 AGCTAGGCCCTTCATTTGTAAG 58.109 45.455 0.00 0.00 0.00 2.34
54 55 2.359214 GCTAGGCCCTTCATTTGTAAGC 59.641 50.000 0.00 0.00 0.00 3.09
55 56 2.603075 AGGCCCTTCATTTGTAAGCA 57.397 45.000 0.00 0.00 0.00 3.91
56 57 2.888212 AGGCCCTTCATTTGTAAGCAA 58.112 42.857 0.00 0.00 0.00 3.91
58 59 3.645687 AGGCCCTTCATTTGTAAGCAAAA 59.354 39.130 0.00 0.00 46.23 2.44
59 60 3.745975 GGCCCTTCATTTGTAAGCAAAAC 59.254 43.478 0.00 0.00 46.23 2.43
60 61 4.376146 GCCCTTCATTTGTAAGCAAAACA 58.624 39.130 0.00 0.00 46.23 2.83
61 62 4.813697 GCCCTTCATTTGTAAGCAAAACAA 59.186 37.500 0.00 0.00 46.23 2.83
71 72 8.948631 TTTGTAAGCAAAACAAATGTATCCAA 57.051 26.923 7.05 0.00 40.83 3.53
72 73 9.553064 TTTGTAAGCAAAACAAATGTATCCAAT 57.447 25.926 7.05 0.00 40.83 3.16
73 74 9.553064 TTGTAAGCAAAACAAATGTATCCAATT 57.447 25.926 0.00 0.00 34.04 2.32
74 75 9.553064 TGTAAGCAAAACAAATGTATCCAATTT 57.447 25.926 0.00 0.00 0.00 1.82
77 78 8.776376 AGCAAAACAAATGTATCCAATTTAGG 57.224 30.769 0.00 0.00 0.00 2.69
78 79 7.334171 AGCAAAACAAATGTATCCAATTTAGGC 59.666 33.333 0.00 0.00 0.00 3.93
79 80 7.118971 GCAAAACAAATGTATCCAATTTAGGCA 59.881 33.333 0.00 0.00 0.00 4.75
80 81 8.658609 CAAAACAAATGTATCCAATTTAGGCAG 58.341 33.333 0.00 0.00 0.00 4.85
81 82 5.906073 ACAAATGTATCCAATTTAGGCAGC 58.094 37.500 0.00 0.00 0.00 5.25
82 83 5.421693 ACAAATGTATCCAATTTAGGCAGCA 59.578 36.000 0.00 0.00 0.00 4.41
83 84 6.098695 ACAAATGTATCCAATTTAGGCAGCAT 59.901 34.615 0.00 0.00 0.00 3.79
84 85 5.972107 ATGTATCCAATTTAGGCAGCATC 57.028 39.130 0.00 0.00 0.00 3.91
85 86 4.790937 TGTATCCAATTTAGGCAGCATCA 58.209 39.130 0.00 0.00 0.00 3.07
86 87 5.387788 TGTATCCAATTTAGGCAGCATCAT 58.612 37.500 0.00 0.00 0.00 2.45
87 88 6.541907 TGTATCCAATTTAGGCAGCATCATA 58.458 36.000 0.00 0.00 0.00 2.15
88 89 7.177184 TGTATCCAATTTAGGCAGCATCATAT 58.823 34.615 0.00 0.00 0.00 1.78
89 90 7.670979 TGTATCCAATTTAGGCAGCATCATATT 59.329 33.333 0.00 0.00 0.00 1.28
90 91 6.579666 TCCAATTTAGGCAGCATCATATTC 57.420 37.500 0.00 0.00 0.00 1.75
91 92 6.309357 TCCAATTTAGGCAGCATCATATTCT 58.691 36.000 0.00 0.00 0.00 2.40
92 93 6.432162 TCCAATTTAGGCAGCATCATATTCTC 59.568 38.462 0.00 0.00 0.00 2.87
93 94 6.208007 CCAATTTAGGCAGCATCATATTCTCA 59.792 38.462 0.00 0.00 0.00 3.27
94 95 7.093902 CCAATTTAGGCAGCATCATATTCTCAT 60.094 37.037 0.00 0.00 0.00 2.90
95 96 6.812879 TTTAGGCAGCATCATATTCTCATG 57.187 37.500 0.00 0.00 0.00 3.07
96 97 4.635699 AGGCAGCATCATATTCTCATGA 57.364 40.909 0.00 0.00 39.20 3.07
97 98 4.981812 AGGCAGCATCATATTCTCATGAA 58.018 39.130 0.00 0.00 38.39 2.57
98 99 4.760715 AGGCAGCATCATATTCTCATGAAC 59.239 41.667 0.00 0.00 38.39 3.18
99 100 4.517832 GGCAGCATCATATTCTCATGAACA 59.482 41.667 0.00 0.00 38.39 3.18
100 101 5.183331 GGCAGCATCATATTCTCATGAACAT 59.817 40.000 0.00 0.00 38.39 2.71
101 102 6.294564 GGCAGCATCATATTCTCATGAACATT 60.295 38.462 0.00 0.00 38.39 2.71
102 103 7.094506 GGCAGCATCATATTCTCATGAACATTA 60.095 37.037 0.00 0.00 38.39 1.90
103 104 7.963465 GCAGCATCATATTCTCATGAACATTAG 59.037 37.037 0.00 0.00 38.39 1.73
104 105 9.216117 CAGCATCATATTCTCATGAACATTAGA 57.784 33.333 0.00 0.00 38.39 2.10
105 106 9.788889 AGCATCATATTCTCATGAACATTAGAA 57.211 29.630 11.93 11.93 38.39 2.10
114 115 9.904198 TTCTCATGAACATTAGAATCATTACCA 57.096 29.630 0.00 0.00 31.65 3.25
115 116 9.904198 TCTCATGAACATTAGAATCATTACCAA 57.096 29.630 0.00 0.00 31.65 3.67
117 118 9.904198 TCATGAACATTAGAATCATTACCAAGA 57.096 29.630 0.00 0.00 31.65 3.02
121 122 9.490663 GAACATTAGAATCATTACCAAGAAACG 57.509 33.333 0.00 0.00 0.00 3.60
122 123 8.786826 ACATTAGAATCATTACCAAGAAACGA 57.213 30.769 0.00 0.00 0.00 3.85
123 124 9.226606 ACATTAGAATCATTACCAAGAAACGAA 57.773 29.630 0.00 0.00 0.00 3.85
144 145 8.047413 ACGAAAGTACCTGGTAATTTAATTGG 57.953 34.615 26.60 17.17 46.88 3.16
145 146 6.970613 CGAAAGTACCTGGTAATTTAATTGGC 59.029 38.462 26.60 14.99 36.63 4.52
146 147 6.445357 AAGTACCTGGTAATTTAATTGGCG 57.555 37.500 13.39 0.00 0.00 5.69
147 148 5.503002 AGTACCTGGTAATTTAATTGGCGT 58.497 37.500 8.40 0.00 0.00 5.68
148 149 4.712122 ACCTGGTAATTTAATTGGCGTG 57.288 40.909 0.00 0.00 0.00 5.34
149 150 3.119280 ACCTGGTAATTTAATTGGCGTGC 60.119 43.478 0.00 0.00 0.00 5.34
150 151 3.105203 CTGGTAATTTAATTGGCGTGCG 58.895 45.455 0.00 0.00 0.00 5.34
151 152 1.849829 GGTAATTTAATTGGCGTGCGC 59.150 47.619 8.17 8.17 41.06 6.09
152 153 1.511147 GTAATTTAATTGGCGTGCGCG 59.489 47.619 16.86 16.86 43.06 6.86
153 154 0.169230 AATTTAATTGGCGTGCGCGA 59.831 45.000 26.19 2.13 43.06 5.87
154 155 0.248054 ATTTAATTGGCGTGCGCGAG 60.248 50.000 26.19 0.19 43.06 5.03
168 169 2.493713 CGCGAGCTCTAGTAATTGGT 57.506 50.000 12.85 0.00 0.00 3.67
169 170 2.386249 CGCGAGCTCTAGTAATTGGTC 58.614 52.381 12.85 0.00 0.00 4.02
170 171 2.745102 GCGAGCTCTAGTAATTGGTCC 58.255 52.381 12.85 0.00 0.00 4.46
171 172 2.100916 GCGAGCTCTAGTAATTGGTCCA 59.899 50.000 12.85 0.00 0.00 4.02
172 173 3.797184 GCGAGCTCTAGTAATTGGTCCAG 60.797 52.174 12.85 0.00 0.00 3.86
173 174 3.381908 CGAGCTCTAGTAATTGGTCCAGT 59.618 47.826 12.85 0.00 0.00 4.00
174 175 4.579340 CGAGCTCTAGTAATTGGTCCAGTA 59.421 45.833 12.85 0.00 0.00 2.74
175 176 5.241949 CGAGCTCTAGTAATTGGTCCAGTAT 59.758 44.000 12.85 0.00 0.00 2.12
176 177 6.412362 AGCTCTAGTAATTGGTCCAGTATG 57.588 41.667 0.00 0.00 0.00 2.39
177 178 5.900123 AGCTCTAGTAATTGGTCCAGTATGT 59.100 40.000 0.00 0.00 0.00 2.29
178 179 7.067421 AGCTCTAGTAATTGGTCCAGTATGTA 58.933 38.462 0.00 0.00 0.00 2.29
179 180 7.730784 AGCTCTAGTAATTGGTCCAGTATGTAT 59.269 37.037 0.00 0.00 0.00 2.29
180 181 9.021807 GCTCTAGTAATTGGTCCAGTATGTATA 57.978 37.037 0.00 0.00 0.00 1.47
182 183 9.021807 TCTAGTAATTGGTCCAGTATGTATAGC 57.978 37.037 0.00 0.00 0.00 2.97
183 184 7.612065 AGTAATTGGTCCAGTATGTATAGCA 57.388 36.000 0.00 0.00 0.00 3.49
184 185 7.671302 AGTAATTGGTCCAGTATGTATAGCAG 58.329 38.462 0.00 0.00 0.00 4.24
185 186 4.336889 TTGGTCCAGTATGTATAGCAGC 57.663 45.455 0.00 0.00 0.00 5.25
186 187 3.304829 TGGTCCAGTATGTATAGCAGCA 58.695 45.455 0.00 0.00 0.00 4.41
187 188 3.321968 TGGTCCAGTATGTATAGCAGCAG 59.678 47.826 0.00 0.00 0.00 4.24
188 189 3.306364 GGTCCAGTATGTATAGCAGCAGG 60.306 52.174 0.00 0.00 0.00 4.85
189 190 2.899900 TCCAGTATGTATAGCAGCAGGG 59.100 50.000 0.00 0.00 0.00 4.45
190 191 2.027745 CCAGTATGTATAGCAGCAGGGG 60.028 54.545 0.00 0.00 0.00 4.79
191 192 1.625818 AGTATGTATAGCAGCAGGGGC 59.374 52.381 0.00 0.00 41.61 5.80
201 202 3.646715 GCAGGGGCTGTGGGTGTA 61.647 66.667 0.00 0.00 36.96 2.90
202 203 3.166434 CAGGGGCTGTGGGTGTAA 58.834 61.111 0.00 0.00 0.00 2.41
203 204 1.303317 CAGGGGCTGTGGGTGTAAC 60.303 63.158 0.00 0.00 0.00 2.50
204 205 1.772567 AGGGGCTGTGGGTGTAACA 60.773 57.895 0.00 0.00 39.98 2.41
205 206 1.151908 GGGGCTGTGGGTGTAACAA 59.848 57.895 0.00 0.00 39.98 2.83
206 207 0.251608 GGGGCTGTGGGTGTAACAAT 60.252 55.000 0.00 0.00 39.98 2.71
207 208 0.887933 GGGCTGTGGGTGTAACAATG 59.112 55.000 0.00 0.00 39.98 2.82
208 209 0.887933 GGCTGTGGGTGTAACAATGG 59.112 55.000 0.00 0.00 39.98 3.16
209 210 1.616159 GCTGTGGGTGTAACAATGGT 58.384 50.000 0.00 0.00 39.98 3.55
210 211 2.553466 GGCTGTGGGTGTAACAATGGTA 60.553 50.000 0.00 0.00 39.98 3.25
211 212 3.352648 GCTGTGGGTGTAACAATGGTAT 58.647 45.455 0.00 0.00 39.98 2.73
212 213 3.761752 GCTGTGGGTGTAACAATGGTATT 59.238 43.478 0.00 0.00 39.98 1.89
213 214 4.380444 GCTGTGGGTGTAACAATGGTATTG 60.380 45.833 0.28 0.28 39.98 1.90
214 215 4.986783 TGTGGGTGTAACAATGGTATTGA 58.013 39.130 8.41 0.00 39.98 2.57
215 216 5.575157 TGTGGGTGTAACAATGGTATTGAT 58.425 37.500 8.41 0.00 39.98 2.57
216 217 5.417266 TGTGGGTGTAACAATGGTATTGATG 59.583 40.000 8.41 0.00 39.98 3.07
217 218 5.417580 GTGGGTGTAACAATGGTATTGATGT 59.582 40.000 8.41 0.00 39.98 3.06
218 219 5.650266 TGGGTGTAACAATGGTATTGATGTC 59.350 40.000 8.41 0.00 39.98 3.06
219 220 5.067283 GGGTGTAACAATGGTATTGATGTCC 59.933 44.000 8.41 4.55 39.98 4.02
220 221 5.885912 GGTGTAACAATGGTATTGATGTCCT 59.114 40.000 8.41 0.00 39.98 3.85
221 222 6.038271 GGTGTAACAATGGTATTGATGTCCTC 59.962 42.308 8.41 0.00 39.98 3.71
222 223 6.597672 GTGTAACAATGGTATTGATGTCCTCA 59.402 38.462 8.41 0.00 36.32 3.86
223 224 7.283127 GTGTAACAATGGTATTGATGTCCTCAT 59.717 37.037 8.41 0.00 36.32 2.90
287 288 1.923356 TTTCCCAAGGACTTGCCATC 58.077 50.000 6.54 0.00 39.16 3.51
307 308 1.498264 GTAAGAGGGAGAAGGGGGAC 58.502 60.000 0.00 0.00 0.00 4.46
611 612 2.973694 TACGGGTTGGCTGTCTAATC 57.026 50.000 0.00 0.00 0.00 1.75
883 884 3.119531 CCCTTGCGAATAACTTGATGCAA 60.120 43.478 0.00 0.00 39.73 4.08
885 886 3.763097 TGCGAATAACTTGATGCAAGG 57.237 42.857 11.40 0.00 44.81 3.61
886 887 3.342719 TGCGAATAACTTGATGCAAGGA 58.657 40.909 11.40 0.27 44.81 3.36
887 888 3.755905 TGCGAATAACTTGATGCAAGGAA 59.244 39.130 11.40 0.17 44.81 3.36
888 889 4.142622 TGCGAATAACTTGATGCAAGGAAG 60.143 41.667 11.40 0.00 44.81 3.46
889 890 4.346129 CGAATAACTTGATGCAAGGAAGC 58.654 43.478 11.40 0.00 44.81 3.86
890 891 4.095483 CGAATAACTTGATGCAAGGAAGCT 59.905 41.667 11.40 0.00 44.81 3.74
891 892 5.294306 CGAATAACTTGATGCAAGGAAGCTA 59.706 40.000 11.40 0.00 44.81 3.32
892 893 6.017605 CGAATAACTTGATGCAAGGAAGCTAT 60.018 38.462 11.40 0.00 44.81 2.97
893 894 7.171508 CGAATAACTTGATGCAAGGAAGCTATA 59.828 37.037 11.40 0.00 44.81 1.31
894 895 8.752005 AATAACTTGATGCAAGGAAGCTATAA 57.248 30.769 11.40 0.00 44.81 0.98
895 896 6.690194 AACTTGATGCAAGGAAGCTATAAG 57.310 37.500 11.40 0.00 44.81 1.73
896 897 5.749462 ACTTGATGCAAGGAAGCTATAAGT 58.251 37.500 11.40 0.00 44.81 2.24
897 898 6.889198 ACTTGATGCAAGGAAGCTATAAGTA 58.111 36.000 11.40 0.00 44.81 2.24
898 899 6.989169 ACTTGATGCAAGGAAGCTATAAGTAG 59.011 38.462 11.40 0.00 44.81 2.57
899 900 6.731292 TGATGCAAGGAAGCTATAAGTAGA 57.269 37.500 0.00 0.00 34.99 2.59
900 901 6.753180 TGATGCAAGGAAGCTATAAGTAGAG 58.247 40.000 0.00 0.00 34.99 2.43
1011 1012 3.545703 CCTTGCGGTAATGATTCCTCTT 58.454 45.455 0.00 0.00 0.00 2.85
1813 1815 7.504238 GGAGATGACTATGAAAAGACCTCTCTA 59.496 40.741 0.00 0.00 35.20 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.572985 TGAACATTGGAGCAAGAACAAG 57.427 40.909 0.00 0.00 0.00 3.16
1 2 4.022068 GGATGAACATTGGAGCAAGAACAA 60.022 41.667 0.00 0.00 0.00 2.83
2 3 3.507233 GGATGAACATTGGAGCAAGAACA 59.493 43.478 0.00 0.00 0.00 3.18
3 4 3.760684 AGGATGAACATTGGAGCAAGAAC 59.239 43.478 0.00 0.00 0.00 3.01
4 5 4.038271 AGGATGAACATTGGAGCAAGAA 57.962 40.909 0.00 0.00 0.00 2.52
5 6 3.726557 AGGATGAACATTGGAGCAAGA 57.273 42.857 0.00 0.00 0.00 3.02
6 7 4.015084 AGAAGGATGAACATTGGAGCAAG 58.985 43.478 0.00 0.00 0.00 4.01
7 8 4.012374 GAGAAGGATGAACATTGGAGCAA 58.988 43.478 0.00 0.00 0.00 3.91
8 9 3.009363 TGAGAAGGATGAACATTGGAGCA 59.991 43.478 0.00 0.00 0.00 4.26
9 10 3.614092 TGAGAAGGATGAACATTGGAGC 58.386 45.455 0.00 0.00 0.00 4.70
10 11 5.392811 GCTTTGAGAAGGATGAACATTGGAG 60.393 44.000 0.00 0.00 33.34 3.86
11 12 4.460382 GCTTTGAGAAGGATGAACATTGGA 59.540 41.667 0.00 0.00 33.34 3.53
12 13 4.461781 AGCTTTGAGAAGGATGAACATTGG 59.538 41.667 0.00 0.00 33.34 3.16
13 14 5.640189 AGCTTTGAGAAGGATGAACATTG 57.360 39.130 0.00 0.00 33.34 2.82
14 15 5.884792 CCTAGCTTTGAGAAGGATGAACATT 59.115 40.000 0.00 0.00 33.34 2.71
15 16 5.435291 CCTAGCTTTGAGAAGGATGAACAT 58.565 41.667 0.00 0.00 33.34 2.71
16 17 4.836825 CCTAGCTTTGAGAAGGATGAACA 58.163 43.478 0.00 0.00 33.34 3.18
17 18 3.625313 GCCTAGCTTTGAGAAGGATGAAC 59.375 47.826 1.97 0.00 33.34 3.18
18 19 3.370953 GGCCTAGCTTTGAGAAGGATGAA 60.371 47.826 1.97 0.00 33.34 2.57
19 20 2.171448 GGCCTAGCTTTGAGAAGGATGA 59.829 50.000 1.97 0.00 33.34 2.92
20 21 2.570135 GGCCTAGCTTTGAGAAGGATG 58.430 52.381 1.97 0.00 33.34 3.51
21 22 1.492599 GGGCCTAGCTTTGAGAAGGAT 59.507 52.381 0.84 0.00 33.34 3.24
22 23 0.912486 GGGCCTAGCTTTGAGAAGGA 59.088 55.000 0.84 0.00 33.34 3.36
23 24 0.915364 AGGGCCTAGCTTTGAGAAGG 59.085 55.000 2.82 0.00 33.34 3.46
24 25 2.026822 TGAAGGGCCTAGCTTTGAGAAG 60.027 50.000 6.41 0.00 35.92 2.85
25 26 1.985159 TGAAGGGCCTAGCTTTGAGAA 59.015 47.619 6.41 0.00 0.00 2.87
26 27 1.656587 TGAAGGGCCTAGCTTTGAGA 58.343 50.000 6.41 0.00 0.00 3.27
27 28 2.725221 ATGAAGGGCCTAGCTTTGAG 57.275 50.000 6.41 0.00 0.00 3.02
28 29 3.091545 CAAATGAAGGGCCTAGCTTTGA 58.908 45.455 21.17 0.00 0.00 2.69
29 30 2.827921 ACAAATGAAGGGCCTAGCTTTG 59.172 45.455 22.80 22.80 0.00 2.77
30 31 3.175438 ACAAATGAAGGGCCTAGCTTT 57.825 42.857 6.41 3.75 0.00 3.51
31 32 2.907458 ACAAATGAAGGGCCTAGCTT 57.093 45.000 6.41 0.00 0.00 3.74
32 33 3.891049 CTTACAAATGAAGGGCCTAGCT 58.109 45.455 6.41 0.00 0.00 3.32
33 34 2.359214 GCTTACAAATGAAGGGCCTAGC 59.641 50.000 6.41 4.69 0.00 3.42
34 35 3.620488 TGCTTACAAATGAAGGGCCTAG 58.380 45.455 6.41 0.00 0.00 3.02
35 36 3.730215 TGCTTACAAATGAAGGGCCTA 57.270 42.857 6.41 0.00 0.00 3.93
36 37 2.603075 TGCTTACAAATGAAGGGCCT 57.397 45.000 0.00 0.00 0.00 5.19
37 38 3.676291 TTTGCTTACAAATGAAGGGCC 57.324 42.857 0.00 0.00 40.84 5.80
38 39 4.376146 TGTTTTGCTTACAAATGAAGGGC 58.624 39.130 0.00 0.00 44.96 5.19
39 40 6.917217 TTTGTTTTGCTTACAAATGAAGGG 57.083 33.333 7.27 0.00 44.96 3.95
64 65 5.972107 ATGATGCTGCCTAAATTGGATAC 57.028 39.130 0.00 0.00 0.00 2.24
65 66 8.111545 AGAATATGATGCTGCCTAAATTGGATA 58.888 33.333 0.00 0.00 0.00 2.59
66 67 6.952358 AGAATATGATGCTGCCTAAATTGGAT 59.048 34.615 0.00 0.00 0.00 3.41
67 68 6.309357 AGAATATGATGCTGCCTAAATTGGA 58.691 36.000 0.00 0.00 0.00 3.53
68 69 6.208007 TGAGAATATGATGCTGCCTAAATTGG 59.792 38.462 0.00 0.00 0.00 3.16
69 70 7.210718 TGAGAATATGATGCTGCCTAAATTG 57.789 36.000 0.00 0.00 0.00 2.32
70 71 7.668469 TCATGAGAATATGATGCTGCCTAAATT 59.332 33.333 0.00 0.00 32.39 1.82
71 72 7.173032 TCATGAGAATATGATGCTGCCTAAAT 58.827 34.615 0.00 0.00 32.39 1.40
72 73 6.536447 TCATGAGAATATGATGCTGCCTAAA 58.464 36.000 0.00 0.00 32.39 1.85
73 74 6.117975 TCATGAGAATATGATGCTGCCTAA 57.882 37.500 0.00 0.00 32.39 2.69
74 75 5.750352 TCATGAGAATATGATGCTGCCTA 57.250 39.130 0.00 0.00 32.39 3.93
75 76 4.635699 TCATGAGAATATGATGCTGCCT 57.364 40.909 0.00 0.00 32.39 4.75
76 77 4.517832 TGTTCATGAGAATATGATGCTGCC 59.482 41.667 0.00 0.00 36.97 4.85
77 78 5.684550 TGTTCATGAGAATATGATGCTGC 57.315 39.130 0.00 0.00 36.97 5.25
78 79 9.216117 TCTAATGTTCATGAGAATATGATGCTG 57.784 33.333 0.00 0.00 35.97 4.41
79 80 9.788889 TTCTAATGTTCATGAGAATATGATGCT 57.211 29.630 8.14 0.00 35.97 3.79
88 89 9.904198 TGGTAATGATTCTAATGTTCATGAGAA 57.096 29.630 13.11 13.11 30.76 2.87
89 90 9.904198 TTGGTAATGATTCTAATGTTCATGAGA 57.096 29.630 0.00 0.00 30.76 3.27
91 92 9.904198 TCTTGGTAATGATTCTAATGTTCATGA 57.096 29.630 0.00 0.00 30.76 3.07
95 96 9.490663 CGTTTCTTGGTAATGATTCTAATGTTC 57.509 33.333 0.00 0.00 0.00 3.18
96 97 9.226606 TCGTTTCTTGGTAATGATTCTAATGTT 57.773 29.630 0.00 0.00 0.00 2.71
97 98 8.786826 TCGTTTCTTGGTAATGATTCTAATGT 57.213 30.769 0.00 0.00 0.00 2.71
100 101 9.280174 ACTTTCGTTTCTTGGTAATGATTCTAA 57.720 29.630 0.00 0.00 0.00 2.10
101 102 8.842358 ACTTTCGTTTCTTGGTAATGATTCTA 57.158 30.769 0.00 0.00 0.00 2.10
102 103 7.745620 ACTTTCGTTTCTTGGTAATGATTCT 57.254 32.000 0.00 0.00 0.00 2.40
103 104 7.961283 GGTACTTTCGTTTCTTGGTAATGATTC 59.039 37.037 0.00 0.00 0.00 2.52
104 105 7.664318 AGGTACTTTCGTTTCTTGGTAATGATT 59.336 33.333 0.00 0.00 27.25 2.57
105 106 7.119262 CAGGTACTTTCGTTTCTTGGTAATGAT 59.881 37.037 0.00 0.00 34.60 2.45
106 107 6.425721 CAGGTACTTTCGTTTCTTGGTAATGA 59.574 38.462 0.00 0.00 34.60 2.57
107 108 6.348213 CCAGGTACTTTCGTTTCTTGGTAATG 60.348 42.308 0.00 0.00 34.60 1.90
108 109 5.704053 CCAGGTACTTTCGTTTCTTGGTAAT 59.296 40.000 0.00 0.00 34.60 1.89
109 110 5.058490 CCAGGTACTTTCGTTTCTTGGTAA 58.942 41.667 0.00 0.00 34.60 2.85
110 111 4.101430 ACCAGGTACTTTCGTTTCTTGGTA 59.899 41.667 0.00 0.00 35.87 3.25
111 112 3.118149 ACCAGGTACTTTCGTTTCTTGGT 60.118 43.478 0.00 0.00 34.60 3.67
112 113 3.473625 ACCAGGTACTTTCGTTTCTTGG 58.526 45.455 0.00 0.00 34.60 3.61
113 114 6.796705 ATTACCAGGTACTTTCGTTTCTTG 57.203 37.500 0.00 0.00 34.60 3.02
114 115 7.812690 AAATTACCAGGTACTTTCGTTTCTT 57.187 32.000 8.78 0.00 34.60 2.52
115 116 8.907222 TTAAATTACCAGGTACTTTCGTTTCT 57.093 30.769 16.28 0.00 34.60 2.52
117 118 9.902196 CAATTAAATTACCAGGTACTTTCGTTT 57.098 29.630 16.28 7.91 34.60 3.60
118 119 8.517056 CCAATTAAATTACCAGGTACTTTCGTT 58.483 33.333 16.28 10.70 34.60 3.85
119 120 7.362315 GCCAATTAAATTACCAGGTACTTTCGT 60.362 37.037 16.28 6.10 34.60 3.85
120 121 6.970613 GCCAATTAAATTACCAGGTACTTTCG 59.029 38.462 16.28 6.28 34.60 3.46
121 122 6.970613 CGCCAATTAAATTACCAGGTACTTTC 59.029 38.462 16.28 3.28 34.60 2.62
122 123 6.434965 ACGCCAATTAAATTACCAGGTACTTT 59.565 34.615 16.84 16.84 34.60 2.66
123 124 5.947566 ACGCCAATTAAATTACCAGGTACTT 59.052 36.000 0.00 0.00 34.60 2.24
124 125 5.355910 CACGCCAATTAAATTACCAGGTACT 59.644 40.000 0.00 0.00 43.88 2.73
125 126 5.575019 CACGCCAATTAAATTACCAGGTAC 58.425 41.667 0.00 0.00 0.00 3.34
126 127 4.096682 GCACGCCAATTAAATTACCAGGTA 59.903 41.667 0.00 0.00 0.00 3.08
127 128 3.119280 GCACGCCAATTAAATTACCAGGT 60.119 43.478 0.00 0.00 0.00 4.00
128 129 3.443976 GCACGCCAATTAAATTACCAGG 58.556 45.455 0.00 0.00 0.00 4.45
129 130 3.105203 CGCACGCCAATTAAATTACCAG 58.895 45.455 0.00 0.00 0.00 4.00
130 131 2.732597 GCGCACGCCAATTAAATTACCA 60.733 45.455 0.30 0.00 34.56 3.25
131 132 1.849829 GCGCACGCCAATTAAATTACC 59.150 47.619 0.30 0.00 34.56 2.85
132 133 1.511147 CGCGCACGCCAATTAAATTAC 59.489 47.619 8.75 0.00 37.98 1.89
133 134 1.397343 TCGCGCACGCCAATTAAATTA 59.603 42.857 8.75 0.00 39.84 1.40
134 135 0.169230 TCGCGCACGCCAATTAAATT 59.831 45.000 8.75 0.00 39.84 1.82
135 136 0.248054 CTCGCGCACGCCAATTAAAT 60.248 50.000 8.75 0.00 39.84 1.40
136 137 1.133664 CTCGCGCACGCCAATTAAA 59.866 52.632 8.75 0.00 39.84 1.52
137 138 2.781957 CTCGCGCACGCCAATTAA 59.218 55.556 8.75 0.00 39.84 1.40
138 139 3.860125 GCTCGCGCACGCCAATTA 61.860 61.111 8.75 0.00 39.84 1.40
144 145 2.914797 TTACTAGAGCTCGCGCACGC 62.915 60.000 8.75 9.28 39.84 5.34
145 146 0.317103 ATTACTAGAGCTCGCGCACG 60.317 55.000 8.75 0.00 39.10 5.34
146 147 1.518929 CAATTACTAGAGCTCGCGCAC 59.481 52.381 8.75 0.00 39.10 5.34
147 148 1.536072 CCAATTACTAGAGCTCGCGCA 60.536 52.381 8.75 0.00 39.10 6.09
148 149 1.132588 CCAATTACTAGAGCTCGCGC 58.867 55.000 8.37 0.00 0.00 6.86
149 150 2.386249 GACCAATTACTAGAGCTCGCG 58.614 52.381 8.37 0.00 0.00 5.87
150 151 2.100916 TGGACCAATTACTAGAGCTCGC 59.899 50.000 8.37 0.00 0.00 5.03
151 152 3.381908 ACTGGACCAATTACTAGAGCTCG 59.618 47.826 8.37 0.00 0.00 5.03
152 153 6.041069 ACATACTGGACCAATTACTAGAGCTC 59.959 42.308 5.27 5.27 0.00 4.09
153 154 5.900123 ACATACTGGACCAATTACTAGAGCT 59.100 40.000 0.00 0.00 0.00 4.09
154 155 6.163135 ACATACTGGACCAATTACTAGAGC 57.837 41.667 0.00 0.00 0.00 4.09
156 157 9.021807 GCTATACATACTGGACCAATTACTAGA 57.978 37.037 0.00 0.00 0.00 2.43
157 158 8.803235 TGCTATACATACTGGACCAATTACTAG 58.197 37.037 0.00 0.00 0.00 2.57
158 159 8.715190 TGCTATACATACTGGACCAATTACTA 57.285 34.615 0.00 0.00 0.00 1.82
159 160 7.612065 TGCTATACATACTGGACCAATTACT 57.388 36.000 0.00 0.00 0.00 2.24
160 161 6.369065 GCTGCTATACATACTGGACCAATTAC 59.631 42.308 0.00 0.00 0.00 1.89
161 162 6.042666 TGCTGCTATACATACTGGACCAATTA 59.957 38.462 0.00 0.00 0.00 1.40
162 163 5.163205 TGCTGCTATACATACTGGACCAATT 60.163 40.000 0.00 0.00 0.00 2.32
163 164 4.347876 TGCTGCTATACATACTGGACCAAT 59.652 41.667 0.00 0.00 0.00 3.16
164 165 3.709141 TGCTGCTATACATACTGGACCAA 59.291 43.478 0.00 0.00 0.00 3.67
165 166 3.304829 TGCTGCTATACATACTGGACCA 58.695 45.455 0.00 0.00 0.00 4.02
166 167 3.306364 CCTGCTGCTATACATACTGGACC 60.306 52.174 0.00 0.00 0.00 4.46
167 168 3.306364 CCCTGCTGCTATACATACTGGAC 60.306 52.174 0.00 0.00 0.00 4.02
168 169 2.899900 CCCTGCTGCTATACATACTGGA 59.100 50.000 0.00 0.00 0.00 3.86
169 170 2.027745 CCCCTGCTGCTATACATACTGG 60.028 54.545 0.00 0.00 0.00 4.00
170 171 2.613977 GCCCCTGCTGCTATACATACTG 60.614 54.545 0.00 0.00 33.53 2.74
171 172 1.625818 GCCCCTGCTGCTATACATACT 59.374 52.381 0.00 0.00 33.53 2.12
172 173 2.100605 GCCCCTGCTGCTATACATAC 57.899 55.000 0.00 0.00 33.53 2.39
184 185 3.204467 TTACACCCACAGCCCCTGC 62.204 63.158 0.00 0.00 34.37 4.85
185 186 1.303317 GTTACACCCACAGCCCCTG 60.303 63.158 0.00 0.00 37.52 4.45
186 187 1.357272 TTGTTACACCCACAGCCCCT 61.357 55.000 0.00 0.00 0.00 4.79
187 188 0.251608 ATTGTTACACCCACAGCCCC 60.252 55.000 0.00 0.00 0.00 5.80
188 189 0.887933 CATTGTTACACCCACAGCCC 59.112 55.000 0.00 0.00 0.00 5.19
189 190 0.887933 CCATTGTTACACCCACAGCC 59.112 55.000 0.00 0.00 0.00 4.85
190 191 1.616159 ACCATTGTTACACCCACAGC 58.384 50.000 0.00 0.00 0.00 4.40
191 192 5.007034 TCAATACCATTGTTACACCCACAG 58.993 41.667 0.00 0.00 0.00 3.66
192 193 4.986783 TCAATACCATTGTTACACCCACA 58.013 39.130 0.00 0.00 0.00 4.17
193 194 5.417580 ACATCAATACCATTGTTACACCCAC 59.582 40.000 0.00 0.00 0.00 4.61
194 195 5.575157 ACATCAATACCATTGTTACACCCA 58.425 37.500 0.00 0.00 0.00 4.51
195 196 5.067283 GGACATCAATACCATTGTTACACCC 59.933 44.000 0.00 0.00 0.00 4.61
196 197 5.885912 AGGACATCAATACCATTGTTACACC 59.114 40.000 0.00 0.00 0.00 4.16
197 198 6.597672 TGAGGACATCAATACCATTGTTACAC 59.402 38.462 0.00 0.00 34.02 2.90
198 199 6.716284 TGAGGACATCAATACCATTGTTACA 58.284 36.000 0.00 0.00 34.02 2.41
199 200 7.807977 ATGAGGACATCAATACCATTGTTAC 57.192 36.000 0.00 0.00 42.53 2.50
219 220 3.490078 GCGTTAAGAGACCCTCTGATGAG 60.490 52.174 0.00 0.00 40.28 2.90
220 221 2.427453 GCGTTAAGAGACCCTCTGATGA 59.573 50.000 0.00 0.00 40.28 2.92
221 222 2.482142 GGCGTTAAGAGACCCTCTGATG 60.482 54.545 0.00 0.00 40.28 3.07
222 223 1.757699 GGCGTTAAGAGACCCTCTGAT 59.242 52.381 0.00 0.00 40.28 2.90
223 224 1.183549 GGCGTTAAGAGACCCTCTGA 58.816 55.000 0.00 0.00 40.28 3.27
224 225 1.187087 AGGCGTTAAGAGACCCTCTG 58.813 55.000 0.00 0.00 40.28 3.35
225 226 1.826096 GAAGGCGTTAAGAGACCCTCT 59.174 52.381 0.00 0.00 43.37 3.69
287 288 0.032416 TCCCCCTTCTCCCTCTTACG 60.032 60.000 0.00 0.00 0.00 3.18
307 308 0.162507 CGCTCTTCAAGTGTGCTTCG 59.837 55.000 0.00 0.00 31.49 3.79
611 612 1.340248 ACTATCATTACCGCCTGGACG 59.660 52.381 0.00 0.03 39.21 4.79
883 884 7.761608 ACCATAGACTCTACTTATAGCTTCCT 58.238 38.462 0.00 0.00 0.00 3.36
884 885 8.411991 AACCATAGACTCTACTTATAGCTTCC 57.588 38.462 0.00 0.00 0.00 3.46
886 887 9.001542 CGTAACCATAGACTCTACTTATAGCTT 57.998 37.037 0.00 0.00 0.00 3.74
887 888 8.373981 TCGTAACCATAGACTCTACTTATAGCT 58.626 37.037 0.00 0.00 0.00 3.32
888 889 8.545229 TCGTAACCATAGACTCTACTTATAGC 57.455 38.462 0.00 0.00 0.00 2.97
891 892 9.796180 AGAATCGTAACCATAGACTCTACTTAT 57.204 33.333 0.00 0.00 0.00 1.73
893 894 9.054922 GTAGAATCGTAACCATAGACTCTACTT 57.945 37.037 6.19 0.00 33.23 2.24
894 895 7.661027 GGTAGAATCGTAACCATAGACTCTACT 59.339 40.741 11.35 0.00 35.30 2.57
895 896 7.443575 TGGTAGAATCGTAACCATAGACTCTAC 59.556 40.741 5.17 5.17 38.36 2.59
896 897 7.512130 TGGTAGAATCGTAACCATAGACTCTA 58.488 38.462 1.89 0.00 38.36 2.43
897 898 6.363065 TGGTAGAATCGTAACCATAGACTCT 58.637 40.000 1.89 0.00 38.36 3.24
898 899 6.485984 TCTGGTAGAATCGTAACCATAGACTC 59.514 42.308 5.80 0.00 42.23 3.36
899 900 6.363065 TCTGGTAGAATCGTAACCATAGACT 58.637 40.000 5.80 0.00 42.23 3.24
900 901 6.630444 TCTGGTAGAATCGTAACCATAGAC 57.370 41.667 5.80 0.00 42.23 2.59
1011 1012 4.448395 CGTTGTGGTAAAGGTCGTAATTCA 59.552 41.667 0.00 0.00 0.00 2.57
1804 1806 5.067273 TCAATTCGAGGATCTAGAGAGGTC 58.933 45.833 0.00 0.00 31.27 3.85
1813 1815 6.729690 ATCTCTCTTTCAATTCGAGGATCT 57.270 37.500 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.