AutoCloner

Multiple sequence alignment - TraesCS2D01G241000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G241000	chr2D	100.000	2414	0	0	1	2414	260388080	260385667	0.000000e+00	4458.0
1	TraesCS2D01G241000	chr2D	94.833	2342	89	10	1	2315	167550647	167548311	0.000000e+00	3626.0
2	TraesCS2D01G241000	chr2D	94.314	2339	90	24	2	2310	450557233	450554908	0.000000e+00	3542.0
3	TraesCS2D01G241000	chr2D	93.986	2328	121	12	1	2315	471597552	471595231	0.000000e+00	3506.0
4	TraesCS2D01G241000	chr2D	95.312	448	18	2	1870	2314	422704375	422704822	0.000000e+00	708.0
5	TraesCS2D01G241000	chr2D	89.091	110	2	2	2315	2414	260370352	260370243	7.010000e-26	128.0
6	TraesCS2D01G241000	chr5D	95.228	2326	99	8	1	2320	249656388	249654069	0.000000e+00	3670.0
7	TraesCS2D01G241000	chr5D	87.273	110	4	2	2315	2414	509445603	509445712	1.520000e-22	117.0
8	TraesCS2D01G241000	chr4D	95.284	2269	94	10	50	2310	65499330	65497067	0.000000e+00	3585.0
9	TraesCS2D01G241000	chr3D	94.485	2321	119	6	1	2314	397849385	397851703	0.000000e+00	3568.0
10	TraesCS2D01G241000	chr3D	94.336	2348	100	15	1	2320	541034900	541032558	0.000000e+00	3568.0
11	TraesCS2D01G241000	chr5A	93.582	2337	126	14	1	2322	307496118	307498445	0.000000e+00	3463.0
12	TraesCS2D01G241000	chr2A	93.589	2324	116	16	1	2316	652910315	652912613	0.000000e+00	3435.0
13	TraesCS2D01G241000	chr2A	86.792	106	4	2	2319	2414	723145390	723145495	2.540000e-20	110.0
14	TraesCS2D01G241000	chr2B	91.725	1704	106	17	630	2316	56505338	56507023	0.000000e+00	2333.0
15	TraesCS2D01G241000	chr2B	91.353	1700	114	16	633	2316	56363737	56365419	0.000000e+00	2294.0
16	TraesCS2D01G241000	chrUn	88.182	110	3	2	2315	2414	287139102	287138993	3.260000e-24	122.0
17	TraesCS2D01G241000	chrUn	88.182	110	3	2	2315	2414	287145271	287145162	3.260000e-24	122.0
18	TraesCS2D01G241000	chrUn	88.182	110	3	2	2315	2414	466024226	466024335	3.260000e-24	122.0
19	TraesCS2D01G241000	chrUn	85.586	111	5	3	2315	2414	243698961	243698851	3.280000e-19	106.0
20	TraesCS2D01G241000	chrUn	85.586	111	5	3	2315	2414	256323894	256324004	3.280000e-19	106.0
21	TraesCS2D01G241000	chr5B	82.883	111	6	4	2315	2414	149326934	149327042	1.190000e-13	87.9
22	TraesCS2D01G241000	chr5B	100.000	42	0	0	2315	2356	149319813	149319854	7.160000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G241000	chr2D	260385667	260388080	2413	True	4458	4458	100.000	1	2414	1	chr2D.!!$R3	2413
1	TraesCS2D01G241000	chr2D	167548311	167550647	2336	True	3626	3626	94.833	1	2315	1	chr2D.!!$R1	2314
2	TraesCS2D01G241000	chr2D	450554908	450557233	2325	True	3542	3542	94.314	2	2310	1	chr2D.!!$R4	2308
3	TraesCS2D01G241000	chr2D	471595231	471597552	2321	True	3506	3506	93.986	1	2315	1	chr2D.!!$R5	2314
4	TraesCS2D01G241000	chr5D	249654069	249656388	2319	True	3670	3670	95.228	1	2320	1	chr5D.!!$R1	2319
5	TraesCS2D01G241000	chr4D	65497067	65499330	2263	True	3585	3585	95.284	50	2310	1	chr4D.!!$R1	2260
6	TraesCS2D01G241000	chr3D	397849385	397851703	2318	False	3568	3568	94.485	1	2314	1	chr3D.!!$F1	2313
7	TraesCS2D01G241000	chr3D	541032558	541034900	2342	True	3568	3568	94.336	1	2320	1	chr3D.!!$R1	2319
8	TraesCS2D01G241000	chr5A	307496118	307498445	2327	False	3463	3463	93.582	1	2322	1	chr5A.!!$F1	2321
9	TraesCS2D01G241000	chr2A	652910315	652912613	2298	False	3435	3435	93.589	1	2316	1	chr2A.!!$F1	2315
10	TraesCS2D01G241000	chr2B	56505338	56507023	1685	False	2333	2333	91.725	630	2316	1	chr2B.!!$F2	1686
11	TraesCS2D01G241000	chr2B	56363737	56365419	1682	False	2294	2294	91.353	633	2316	1	chr2B.!!$F1	1683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
79	81	0.396435	TTGACCTTGATCGTGCCAGT	59.604	50.0	0.0	0.0	0.0	4.00	F
811	823	1.026182	ACGCGTGTACACTCCCGATA	61.026	55.0	26.3	0.0	0.0	2.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1110	1126	0.472471	TGAAGTTCCTTGCGGTCCTT	59.528	50.0	0.00	0.0	0.00	3.36	R
2391	2512	0.398098	TAGGGTTCCGGCTCCTAAGG	60.398	60.0	12.75	0.0	30.91	2.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	81	0.396435	TTGACCTTGATCGTGCCAGT	59.604	50.000	0.00	0.00	0.00	4.00
153	156	8.572828	TCGTTAGTTTGTCTTATAAAACGACA	57.427	30.769	11.45	7.42	40.44	4.35
306	314	1.461091	GCCGTCCGATCATACCCTCA	61.461	60.000	0.00	0.00	0.00	3.86
332	341	1.670949	GCGACAGCCCTCAGATCTGA	61.671	60.000	23.75	23.75	37.42	3.27
364	373	2.153898	AATTAGGTGGGCTGGCTGCA	62.154	55.000	18.32	0.00	45.15	4.41
514	525	3.913163	TGTTATTGGGCCCAAAAGGAAAT	59.087	39.130	40.00	24.10	39.55	2.17
699	711	7.671495	AATGGCCACAAACTATTCAAAAATC	57.329	32.000	8.16	0.00	0.00	2.17
811	823	1.026182	ACGCGTGTACACTCCCGATA	61.026	55.000	26.30	0.00	0.00	2.92
1110	1126	2.040947	TGTGTGGGCAATATCAAGGTCA	59.959	45.455	0.00	0.00	0.00	4.02
1152	1168	2.987547	TTCTTCCTCGCGTCCGGT	60.988	61.111	5.77	0.00	34.56	5.28
1389	1405	2.936993	GCACACTCTTCTGTACCCCATG	60.937	54.545	0.00	0.00	0.00	3.66
1541	1577	7.839680	TGAACTATGTAAGAGATGCTATGGA	57.160	36.000	0.00	0.00	0.00	3.41
1704	1740	5.473066	TCACCTTGTTAGTAACCACCTAC	57.527	43.478	10.51	0.00	0.00	3.18
1857	1904	4.154918	GGATCGAAAAGACTGCAACTGATT	59.845	41.667	0.00	0.00	0.00	2.57
1896	1946	1.734477	CGAGGAGACAAGTGTGCGG	60.734	63.158	0.00	0.00	0.00	5.69
1913	1963	1.544825	CGGGAAGAGAGGAACCAGCA	61.545	60.000	0.00	0.00	0.00	4.41
2228	2349	0.183971	TTCTGAGGGTTTCGGGCAAA	59.816	50.000	0.00	0.00	32.69	3.68
2260	2381	6.183360	GGGAAAACTGAGCAAAAGTTAAGAGT	60.183	38.462	0.00	0.00	36.87	3.24
2332	2453	9.822185	AAAATCCCTATTTTTATTAGCAGCAAG	57.178	29.630	0.00	0.00	41.50	4.01
2333	2454	6.959639	TCCCTATTTTTATTAGCAGCAAGG	57.040	37.500	0.00	0.00	0.00	3.61
2334	2455	6.668645	TCCCTATTTTTATTAGCAGCAAGGA	58.331	36.000	0.00	0.00	0.00	3.36
2335	2456	7.297614	TCCCTATTTTTATTAGCAGCAAGGAT	58.702	34.615	0.00	0.00	0.00	3.24
2336	2457	7.784550	TCCCTATTTTTATTAGCAGCAAGGATT	59.215	33.333	0.00	0.00	0.00	3.01
2337	2458	9.077885	CCCTATTTTTATTAGCAGCAAGGATTA	57.922	33.333	0.00	0.00	0.00	1.75
2349	2470	8.332996	AGCAGCAAGGATTATATAAACAGATG	57.667	34.615	0.00	2.01	0.00	2.90
2350	2471	7.941238	AGCAGCAAGGATTATATAAACAGATGT	59.059	33.333	0.00	0.00	0.00	3.06
2351	2472	9.219603	GCAGCAAGGATTATATAAACAGATGTA	57.780	33.333	0.00	0.00	0.00	2.29
2356	2477	9.436957	AAGGATTATATAAACAGATGTAAGGCG	57.563	33.333	0.00	0.00	0.00	5.52
2357	2478	8.041323	AGGATTATATAAACAGATGTAAGGCGG	58.959	37.037	0.00	0.00	0.00	6.13
2358	2479	7.822822	GGATTATATAAACAGATGTAAGGCGGT	59.177	37.037	0.00	0.00	0.00	5.68
2359	2480	9.216117	GATTATATAAACAGATGTAAGGCGGTT	57.784	33.333	0.00	0.00	0.00	4.44
2362	2483	6.920569	ATAAACAGATGTAAGGCGGTTAAG	57.079	37.500	0.00	0.00	0.00	1.85
2363	2484	4.546829	AACAGATGTAAGGCGGTTAAGA	57.453	40.909	0.00	0.00	0.00	2.10
2364	2485	4.546829	ACAGATGTAAGGCGGTTAAGAA	57.453	40.909	0.00	0.00	0.00	2.52
2365	2486	4.901868	ACAGATGTAAGGCGGTTAAGAAA	58.098	39.130	0.00	0.00	0.00	2.52
2366	2487	5.497474	ACAGATGTAAGGCGGTTAAGAAAT	58.503	37.500	0.00	0.00	0.00	2.17
2367	2488	6.646267	ACAGATGTAAGGCGGTTAAGAAATA	58.354	36.000	0.00	0.00	0.00	1.40
2368	2489	7.107542	ACAGATGTAAGGCGGTTAAGAAATAA	58.892	34.615	0.00	0.00	0.00	1.40
2369	2490	7.280205	ACAGATGTAAGGCGGTTAAGAAATAAG	59.720	37.037	0.00	0.00	0.00	1.73
2370	2491	7.280205	CAGATGTAAGGCGGTTAAGAAATAAGT	59.720	37.037	0.00	0.00	0.00	2.24
2371	2492	6.973229	TGTAAGGCGGTTAAGAAATAAGTC	57.027	37.500	0.00	0.00	0.00	3.01
2372	2493	6.465948	TGTAAGGCGGTTAAGAAATAAGTCA	58.534	36.000	0.00	0.00	0.00	3.41
2373	2494	7.107542	TGTAAGGCGGTTAAGAAATAAGTCAT	58.892	34.615	0.00	0.00	0.00	3.06
2374	2495	8.259411	TGTAAGGCGGTTAAGAAATAAGTCATA	58.741	33.333	0.00	0.00	0.00	2.15
2375	2496	9.101655	GTAAGGCGGTTAAGAAATAAGTCATAA	57.898	33.333	0.00	0.00	0.00	1.90
2376	2497	7.549615	AGGCGGTTAAGAAATAAGTCATAAC	57.450	36.000	0.00	0.00	33.14	1.89
2377	2498	7.336396	AGGCGGTTAAGAAATAAGTCATAACT	58.664	34.615	0.00	0.00	33.97	2.24
2378	2499	8.480501	AGGCGGTTAAGAAATAAGTCATAACTA	58.519	33.333	0.00	0.00	33.97	2.24
2379	2500	9.269453	GGCGGTTAAGAAATAAGTCATAACTAT	57.731	33.333	0.00	0.00	33.97	2.12
2385	2506	7.730364	AGAAATAAGTCATAACTATTGGCCG	57.270	36.000	0.00	0.00	33.48	6.13
2386	2507	7.506114	AGAAATAAGTCATAACTATTGGCCGA	58.494	34.615	0.00	0.00	33.48	5.54
2387	2508	7.441458	AGAAATAAGTCATAACTATTGGCCGAC	59.559	37.037	0.00	0.00	33.48	4.79
2388	2509	4.755266	AAGTCATAACTATTGGCCGACT	57.245	40.909	0.00	0.00	33.48	4.18
2389	2510	4.323553	AGTCATAACTATTGGCCGACTC	57.676	45.455	0.00	0.00	32.59	3.36
2390	2511	3.069729	AGTCATAACTATTGGCCGACTCC	59.930	47.826	0.00	0.00	32.59	3.85
2391	2512	2.367567	TCATAACTATTGGCCGACTCCC	59.632	50.000	0.00	0.00	0.00	4.30
2392	2513	1.125633	TAACTATTGGCCGACTCCCC	58.874	55.000	0.00	0.00	0.00	4.81
2393	2514	0.620700	AACTATTGGCCGACTCCCCT	60.621	55.000	0.00	0.00	0.00	4.79
2394	2515	0.620700	ACTATTGGCCGACTCCCCTT	60.621	55.000	0.00	0.00	0.00	3.95
2395	2516	1.343681	ACTATTGGCCGACTCCCCTTA	60.344	52.381	0.00	0.00	0.00	2.69
2396	2517	1.344763	CTATTGGCCGACTCCCCTTAG	59.655	57.143	0.00	0.00	0.00	2.18
2397	2518	1.345715	ATTGGCCGACTCCCCTTAGG	61.346	60.000	0.00	0.00	0.00	2.69
2398	2519	2.042230	GGCCGACTCCCCTTAGGA	60.042	66.667	0.00	0.00	44.91	2.94
2405	2526	2.782119	TCCCCTTAGGAGCCGGAA	59.218	61.111	5.05	0.00	40.93	4.30
2406	2527	1.688187	TCCCCTTAGGAGCCGGAAC	60.688	63.158	5.05	0.00	40.93	3.62
2407	2528	2.743179	CCCCTTAGGAGCCGGAACC	61.743	68.421	5.05	7.56	38.24	3.62
2408	2529	2.743179	CCCTTAGGAGCCGGAACCC	61.743	68.421	5.05	1.57	33.47	4.11
2409	2530	1.689582	CCTTAGGAGCCGGAACCCT	60.690	63.158	5.05	10.50	0.00	4.34
2410	2531	0.398098	CCTTAGGAGCCGGAACCCTA	60.398	60.000	5.05	9.36	0.00	3.53
2411	2532	1.492764	CTTAGGAGCCGGAACCCTAA	58.507	55.000	20.98	20.98	39.47	2.69
2412	2533	1.835531	CTTAGGAGCCGGAACCCTAAA	59.164	52.381	21.91	11.48	40.73	1.85
2413	2534	1.197812	TAGGAGCCGGAACCCTAAAC	58.802	55.000	5.05	0.00	30.21	2.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	6.875195	AGGTCAAATGAGCACCATTAATTTTG	59.125	34.615	14.36	0.00	44.28	2.44
153	156	9.927668	ATGAAAAATATGAAACCTTCGATGTTT	57.072	25.926	11.95	11.95	38.57	2.83
332	341	5.072464	GCCCACCTAATTCCTTCTAGAAGAT	59.928	44.000	30.17	15.90	40.79	2.40
514	525	2.436109	GGCCCAACCAGAGCTTGA	59.564	61.111	0.00	0.00	38.86	3.02
587	599	7.993821	TTTCAAACGATGCAAAAATACAGAA	57.006	28.000	0.00	0.00	0.00	3.02
811	823	0.458260	GTTTTCAAACCCACCGCAGT	59.542	50.000	0.00	0.00	32.82	4.40
1110	1126	0.472471	TGAAGTTCCTTGCGGTCCTT	59.528	50.000	0.00	0.00	0.00	3.36
1152	1168	3.697747	CGCGGGAGGTGGTGGTAA	61.698	66.667	0.00	0.00	0.00	2.85
1496	1530	8.522830	AGTTCAATGGGATTACAACTTAACATG	58.477	33.333	0.00	0.00	0.00	3.21
1527	1563	4.521146	CCAACAAGTCCATAGCATCTCTT	58.479	43.478	0.00	0.00	0.00	2.85
1541	1577	4.223144	ACTTGATAAAAGGGCCAACAAGT	58.777	39.130	6.18	13.92	40.58	3.16
1704	1740	2.126618	CGTTGTGGCTGCATGCAG	60.127	61.111	37.81	37.81	45.15	4.41
1812	1859	2.255172	CGCACCTGCACCCGTTTTA	61.255	57.895	0.00	0.00	42.21	1.52
1845	1892	5.493133	TCGTTTTTACAATCAGTTGCAGT	57.507	34.783	0.00	0.00	38.96	4.40
1857	1904	6.035650	CCTCGATTTAGAGCATCGTTTTTACA	59.964	38.462	3.66	0.00	43.36	2.41
1896	1946	0.980423	ACTGCTGGTTCCTCTCTTCC	59.020	55.000	0.00	0.00	0.00	3.46
2228	2349	0.402121	GCTCAGTTTTCCCCACTCCT	59.598	55.000	0.00	0.00	0.00	3.69
2260	2381	2.682594	CTCTACTCATCCATCCCCACA	58.317	52.381	0.00	0.00	0.00	4.17
2323	2444	9.440773	CATCTGTTTATATAATCCTTGCTGCTA	57.559	33.333	0.00	0.00	0.00	3.49
2324	2445	7.941238	ACATCTGTTTATATAATCCTTGCTGCT	59.059	33.333	0.00	0.00	0.00	4.24
2325	2446	8.103948	ACATCTGTTTATATAATCCTTGCTGC	57.896	34.615	0.00	0.00	0.00	5.25
2330	2451	9.436957	CGCCTTACATCTGTTTATATAATCCTT	57.563	33.333	0.00	0.00	0.00	3.36
2331	2452	8.041323	CCGCCTTACATCTGTTTATATAATCCT	58.959	37.037	0.00	0.00	0.00	3.24
2332	2453	7.822822	ACCGCCTTACATCTGTTTATATAATCC	59.177	37.037	0.00	0.00	0.00	3.01
2333	2454	8.773404	ACCGCCTTACATCTGTTTATATAATC	57.227	34.615	0.00	0.00	0.00	1.75
2336	2457	9.701098	CTTAACCGCCTTACATCTGTTTATATA	57.299	33.333	0.00	0.00	0.00	0.86
2337	2458	8.426489	TCTTAACCGCCTTACATCTGTTTATAT	58.574	33.333	0.00	0.00	0.00	0.86
2338	2459	7.784037	TCTTAACCGCCTTACATCTGTTTATA	58.216	34.615	0.00	0.00	0.00	0.98
2339	2460	6.646267	TCTTAACCGCCTTACATCTGTTTAT	58.354	36.000	0.00	0.00	0.00	1.40
2340	2461	6.040209	TCTTAACCGCCTTACATCTGTTTA	57.960	37.500	0.00	0.00	0.00	2.01
2341	2462	4.901868	TCTTAACCGCCTTACATCTGTTT	58.098	39.130	0.00	0.00	0.00	2.83
2342	2463	4.546829	TCTTAACCGCCTTACATCTGTT	57.453	40.909	0.00	0.00	0.00	3.16
2343	2464	4.546829	TTCTTAACCGCCTTACATCTGT	57.453	40.909	0.00	0.00	0.00	3.41
2344	2465	7.280205	ACTTATTTCTTAACCGCCTTACATCTG	59.720	37.037	0.00	0.00	0.00	2.90
2345	2466	7.336396	ACTTATTTCTTAACCGCCTTACATCT	58.664	34.615	0.00	0.00	0.00	2.90
2346	2467	7.279313	TGACTTATTTCTTAACCGCCTTACATC	59.721	37.037	0.00	0.00	0.00	3.06
2347	2468	7.107542	TGACTTATTTCTTAACCGCCTTACAT	58.892	34.615	0.00	0.00	0.00	2.29
2348	2469	6.465948	TGACTTATTTCTTAACCGCCTTACA	58.534	36.000	0.00	0.00	0.00	2.41
2349	2470	6.973229	TGACTTATTTCTTAACCGCCTTAC	57.027	37.500	0.00	0.00	0.00	2.34
2350	2471	9.101655	GTTATGACTTATTTCTTAACCGCCTTA	57.898	33.333	0.00	0.00	33.24	2.69
2351	2472	7.827729	AGTTATGACTTATTTCTTAACCGCCTT	59.172	33.333	0.00	0.00	37.05	4.35
2352	2473	7.336396	AGTTATGACTTATTTCTTAACCGCCT	58.664	34.615	0.00	0.00	37.05	5.52
2353	2474	7.549615	AGTTATGACTTATTTCTTAACCGCC	57.450	36.000	0.00	0.00	37.05	6.13
2359	2480	9.268268	CGGCCAATAGTTATGACTTATTTCTTA	57.732	33.333	2.24	0.00	37.33	2.10
2360	2481	7.990886	TCGGCCAATAGTTATGACTTATTTCTT	59.009	33.333	2.24	0.00	37.33	2.52
2361	2482	7.441458	GTCGGCCAATAGTTATGACTTATTTCT	59.559	37.037	2.24	0.00	37.33	2.52
2362	2483	7.441458	AGTCGGCCAATAGTTATGACTTATTTC	59.559	37.037	2.24	0.00	37.33	2.17
2363	2484	7.280356	AGTCGGCCAATAGTTATGACTTATTT	58.720	34.615	2.24	0.00	37.33	1.40
2364	2485	6.827727	AGTCGGCCAATAGTTATGACTTATT	58.172	36.000	2.24	0.00	37.33	1.40
2365	2486	6.420913	AGTCGGCCAATAGTTATGACTTAT	57.579	37.500	2.24	0.00	37.33	1.73
2366	2487	5.221382	GGAGTCGGCCAATAGTTATGACTTA	60.221	44.000	2.24	0.00	35.52	2.24
2367	2488	4.443034	GGAGTCGGCCAATAGTTATGACTT	60.443	45.833	2.24	0.00	35.52	3.01
2368	2489	3.069729	GGAGTCGGCCAATAGTTATGACT	59.930	47.826	2.24	3.38	37.87	3.41
2369	2490	3.391049	GGAGTCGGCCAATAGTTATGAC	58.609	50.000	2.24	0.00	0.00	3.06
2370	2491	2.367567	GGGAGTCGGCCAATAGTTATGA	59.632	50.000	2.24	0.00	0.00	2.15
2371	2492	2.550208	GGGGAGTCGGCCAATAGTTATG	60.550	54.545	2.24	0.00	0.00	1.90
2372	2493	1.697982	GGGGAGTCGGCCAATAGTTAT	59.302	52.381	2.24	0.00	0.00	1.89
2373	2494	1.125633	GGGGAGTCGGCCAATAGTTA	58.874	55.000	2.24	0.00	0.00	2.24
2374	2495	0.620700	AGGGGAGTCGGCCAATAGTT	60.621	55.000	2.24	0.00	0.00	2.24
2375	2496	0.620700	AAGGGGAGTCGGCCAATAGT	60.621	55.000	2.24	0.00	0.00	2.12
2376	2497	1.344763	CTAAGGGGAGTCGGCCAATAG	59.655	57.143	2.24	0.00	0.00	1.73
2377	2498	1.420430	CTAAGGGGAGTCGGCCAATA	58.580	55.000	2.24	0.00	0.00	1.90
2378	2499	1.345715	CCTAAGGGGAGTCGGCCAAT	61.346	60.000	2.24	0.00	37.23	3.16
2379	2500	1.993391	CCTAAGGGGAGTCGGCCAA	60.993	63.158	2.24	0.00	37.23	4.52
2380	2501	2.365105	CCTAAGGGGAGTCGGCCA	60.365	66.667	2.24	0.00	37.23	5.36
2381	2502	2.042230	TCCTAAGGGGAGTCGGCC	60.042	66.667	0.00	0.00	39.58	6.13
2388	2509	1.688187	GTTCCGGCTCCTAAGGGGA	60.688	63.158	0.00	0.00	42.77	4.81
2389	2510	2.743179	GGTTCCGGCTCCTAAGGGG	61.743	68.421	0.00	0.00	0.00	4.79
2390	2511	2.743179	GGGTTCCGGCTCCTAAGGG	61.743	68.421	13.02	0.00	0.00	3.95
2391	2512	0.398098	TAGGGTTCCGGCTCCTAAGG	60.398	60.000	12.75	0.00	30.91	2.69
2392	2513	1.492764	TTAGGGTTCCGGCTCCTAAG	58.507	55.000	19.30	0.00	37.99	2.18
2393	2514	1.556451	GTTTAGGGTTCCGGCTCCTAA	59.444	52.381	19.30	19.30	40.26	2.69
2394	2515	1.197812	GTTTAGGGTTCCGGCTCCTA	58.802	55.000	13.02	12.27	32.46	2.94
2395	2516	1.988817	GTTTAGGGTTCCGGCTCCT	59.011	57.895	13.24	13.24	34.85	3.69
2396	2517	4.631773	GTTTAGGGTTCCGGCTCC	57.368	61.111	0.00	0.53	0.00	4.70

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.