Multiple sequence alignment - TraesCS2D01G240000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G240000 chr2D 100.000 4028 0 0 1 4028 257385734 257389761 0.000000e+00 7439.0
1 TraesCS2D01G240000 chr2D 92.369 249 18 1 522 769 528998730 528998482 1.780000e-93 353.0
2 TraesCS2D01G240000 chr2D 94.286 105 5 1 3686 3790 257389321 257389424 4.170000e-35 159.0
3 TraesCS2D01G240000 chr2A 97.630 3207 30 7 849 4028 293154175 293150988 0.000000e+00 5459.0
4 TraesCS2D01G240000 chr2A 91.392 395 33 1 21 415 293154884 293154491 1.270000e-149 540.0
5 TraesCS2D01G240000 chr2A 94.286 105 5 1 3686 3790 293151430 293151327 4.170000e-35 159.0
6 TraesCS2D01G240000 chr2B 97.476 2972 40 15 778 3724 285056580 285053619 0.000000e+00 5040.0
7 TraesCS2D01G240000 chr2B 87.681 138 11 3 3686 3823 579813861 579813730 5.390000e-34 156.0
8 TraesCS2D01G240000 chr2B 90.476 42 3 1 3918 3958 798610852 798610893 2.000000e-03 54.7
9 TraesCS2D01G240000 chr5B 89.342 319 25 6 3371 3687 320645270 320645581 3.770000e-105 392.0
10 TraesCS2D01G240000 chr5B 86.232 138 13 3 3686 3823 320645487 320645618 1.170000e-30 145.0
11 TraesCS2D01G240000 chr4A 88.685 327 28 7 3363 3687 730196056 730195737 1.360000e-104 390.0
12 TraesCS2D01G240000 chr4A 88.489 139 9 5 3686 3823 730195831 730195699 1.160000e-35 161.0
13 TraesCS2D01G240000 chr7D 94.024 251 14 1 520 769 115193304 115193054 2.940000e-101 379.0
14 TraesCS2D01G240000 chr7D 83.936 249 38 2 523 770 524554033 524554280 1.870000e-58 237.0
15 TraesCS2D01G240000 chr4D 87.538 329 30 8 3363 3687 343455908 343455587 1.770000e-98 370.0
16 TraesCS2D01G240000 chr4D 84.082 245 36 3 526 768 9484075 9483832 2.420000e-57 233.0
17 TraesCS2D01G240000 chr4B 87.538 329 30 7 3363 3687 574339058 574339379 1.770000e-98 370.0
18 TraesCS2D01G240000 chr4B 86.800 250 32 1 522 770 63796158 63796407 1.100000e-70 278.0
19 TraesCS2D01G240000 chr4B 88.406 138 10 5 3686 3823 574339285 574339416 1.160000e-35 161.0
20 TraesCS2D01G240000 chr1D 87.234 329 31 8 3363 3687 484177678 484177999 8.230000e-97 364.0
21 TraesCS2D01G240000 chr5D 86.930 329 30 9 3363 3687 487570447 487570766 1.380000e-94 357.0
22 TraesCS2D01G240000 chr1B 86.626 329 32 9 3363 3687 540788910 540788590 1.780000e-93 353.0
23 TraesCS2D01G240000 chr1B 85.315 143 14 6 3686 3828 540788683 540788548 1.510000e-29 141.0
24 TraesCS2D01G240000 chr3D 88.353 249 28 1 522 769 602817801 602818049 8.460000e-77 298.0
25 TraesCS2D01G240000 chr3D 84.519 239 36 1 519 756 97336091 97336329 6.730000e-58 235.0
26 TraesCS2D01G240000 chr6B 88.000 250 29 1 522 770 644388222 644387973 1.090000e-75 294.0
27 TraesCS2D01G240000 chr7B 83.534 249 39 2 522 769 86844346 86844099 8.710000e-57 231.0
28 TraesCS2D01G240000 chr3A 87.681 138 11 3 3686 3823 406270332 406270463 5.390000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G240000 chr2D 257385734 257389761 4027 False 3799.000000 7439 97.143 1 4028 2 chr2D.!!$F1 4027
1 TraesCS2D01G240000 chr2A 293150988 293154884 3896 True 2052.666667 5459 94.436 21 4028 3 chr2A.!!$R1 4007
2 TraesCS2D01G240000 chr2B 285053619 285056580 2961 True 5040.000000 5040 97.476 778 3724 1 chr2B.!!$R1 2946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 695 0.031585 GGCGGACAAAAAGGACAACC 59.968 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3107 3311 4.566426 AACTTCTAGCAGCAATCTCCTT 57.434 40.909 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.822707 ATCACTGTAGTAGACCGGGT 57.177 50.000 6.32 0.00 0.00 5.28
29 30 0.464036 TAGACCGGGTCATCATGTGC 59.536 55.000 27.87 0.00 34.60 4.57
31 32 2.257409 GACCGGGTCATCATGTGCCT 62.257 60.000 22.10 0.00 32.09 4.75
63 64 0.638746 CGTATCGTCGAACAGGTTGC 59.361 55.000 0.00 0.00 0.00 4.17
102 103 2.320781 CCATAGGGATCTCCAACGACT 58.679 52.381 0.00 0.00 38.24 4.18
112 113 2.631062 TCTCCAACGACTGCTTCCTTTA 59.369 45.455 0.00 0.00 0.00 1.85
140 141 2.509336 GACATCTGGTCGGCCACG 60.509 66.667 3.51 1.10 40.46 4.94
141 142 4.082523 ACATCTGGTCGGCCACGG 62.083 66.667 3.51 0.00 40.46 4.94
205 206 1.078759 GCGATCACACTCACTTCCGG 61.079 60.000 0.00 0.00 0.00 5.14
206 207 0.243907 CGATCACACTCACTTCCGGT 59.756 55.000 0.00 0.00 0.00 5.28
222 223 1.901085 GGTGAGGTGGAGAAGCGAT 59.099 57.895 0.00 0.00 0.00 4.58
240 241 0.392461 ATATGCGCCTTGGTCGTGTT 60.392 50.000 4.18 0.00 0.00 3.32
249 250 2.926242 GGTCGTGTTGGGGAGGGA 60.926 66.667 0.00 0.00 0.00 4.20
283 284 3.345808 CGTTGTGGAGGTGCACGG 61.346 66.667 11.45 0.00 0.00 4.94
319 320 4.858680 GCGGGTAGCCAAGGAGCC 62.859 72.222 12.31 0.00 40.81 4.70
364 365 3.319755 CAGCAAAAATGAATGGCTCGTT 58.680 40.909 0.00 0.00 34.56 3.85
365 366 3.742369 CAGCAAAAATGAATGGCTCGTTT 59.258 39.130 0.00 0.00 43.75 3.60
366 367 4.922692 CAGCAAAAATGAATGGCTCGTTTA 59.077 37.500 0.00 0.00 41.52 2.01
369 370 6.650390 AGCAAAAATGAATGGCTCGTTTAAAT 59.350 30.769 0.00 0.00 41.52 1.40
371 372 7.359933 GCAAAAATGAATGGCTCGTTTAAATGA 60.360 33.333 9.70 9.70 41.52 2.57
380 381 4.438336 GGCTCGTTTAAATGAAACCCTAGC 60.438 45.833 11.17 8.78 43.98 3.42
386 387 6.093495 CGTTTAAATGAAACCCTAGCATGAGA 59.907 38.462 0.79 0.00 43.98 3.27
392 393 2.537600 CCCTAGCATGAGAAGGGCT 58.462 57.895 12.85 0.00 43.47 5.19
415 416 2.422597 CTACGTGGCCTTGACAATGAA 58.577 47.619 3.32 0.00 0.00 2.57
416 417 0.951558 ACGTGGCCTTGACAATGAAC 59.048 50.000 3.32 0.00 0.00 3.18
417 418 0.240945 CGTGGCCTTGACAATGAACC 59.759 55.000 3.32 0.00 0.00 3.62
418 419 1.620822 GTGGCCTTGACAATGAACCT 58.379 50.000 3.32 0.00 0.00 3.50
419 420 1.270550 GTGGCCTTGACAATGAACCTG 59.729 52.381 3.32 0.00 0.00 4.00
420 421 0.890683 GGCCTTGACAATGAACCTGG 59.109 55.000 0.00 0.00 0.00 4.45
421 422 1.620822 GCCTTGACAATGAACCTGGT 58.379 50.000 0.00 0.00 0.00 4.00
422 423 1.963515 GCCTTGACAATGAACCTGGTT 59.036 47.619 12.82 12.82 0.00 3.67
423 424 2.029918 GCCTTGACAATGAACCTGGTTC 60.030 50.000 28.50 28.50 42.26 3.62
430 634 2.399856 TGAACCTGGTTCACGCAAC 58.600 52.632 32.67 11.13 45.88 4.17
431 635 1.278637 GAACCTGGTTCACGCAACG 59.721 57.895 29.80 0.00 41.62 4.10
432 636 1.153329 AACCTGGTTCACGCAACGA 60.153 52.632 6.18 0.00 35.59 3.85
433 637 1.157870 AACCTGGTTCACGCAACGAG 61.158 55.000 6.18 3.63 39.84 4.18
443 647 4.038080 GCAACGAGGCAAACCCGG 62.038 66.667 0.00 0.00 39.21 5.73
451 655 3.230990 GCAAACCCGGCCCAAGTT 61.231 61.111 0.00 0.00 0.00 2.66
452 656 2.802724 GCAAACCCGGCCCAAGTTT 61.803 57.895 0.00 1.42 34.13 2.66
453 657 1.068921 CAAACCCGGCCCAAGTTTG 59.931 57.895 19.61 19.61 42.93 2.93
470 674 2.119484 TTGGGCCGGAAATGAGTCGT 62.119 55.000 5.05 0.00 0.00 4.34
473 677 2.165301 GCCGGAAATGAGTCGTCGG 61.165 63.158 5.05 6.60 40.33 4.79
491 695 0.031585 GGCGGACAAAAAGGACAACC 59.968 55.000 0.00 0.00 0.00 3.77
492 696 0.317519 GCGGACAAAAAGGACAACCG 60.318 55.000 0.00 0.00 41.83 4.44
493 697 1.018910 CGGACAAAAAGGACAACCGT 58.981 50.000 0.00 0.00 41.83 4.83
494 698 1.003223 CGGACAAAAAGGACAACCGTC 60.003 52.381 0.00 0.00 41.83 4.79
495 699 2.018515 GGACAAAAAGGACAACCGTCA 58.981 47.619 0.00 0.00 44.54 4.35
496 700 2.223409 GGACAAAAAGGACAACCGTCAC 60.223 50.000 0.00 0.00 44.54 3.67
497 701 1.746787 ACAAAAAGGACAACCGTCACC 59.253 47.619 0.00 0.00 44.54 4.02
498 702 2.021457 CAAAAAGGACAACCGTCACCT 58.979 47.619 0.00 0.00 44.54 4.00
499 703 1.675552 AAAAGGACAACCGTCACCTG 58.324 50.000 0.00 0.00 44.54 4.00
500 704 0.179029 AAAGGACAACCGTCACCTGG 60.179 55.000 0.00 0.00 44.54 4.45
501 705 1.342672 AAGGACAACCGTCACCTGGT 61.343 55.000 0.00 0.00 44.54 4.00
502 706 1.301479 GGACAACCGTCACCTGGTC 60.301 63.158 0.00 0.00 44.54 4.02
503 707 1.746517 GACAACCGTCACCTGGTCT 59.253 57.895 0.00 0.00 42.13 3.85
504 708 0.963962 GACAACCGTCACCTGGTCTA 59.036 55.000 0.00 0.00 42.13 2.59
505 709 1.342174 GACAACCGTCACCTGGTCTAA 59.658 52.381 0.00 0.00 42.13 2.10
506 710 1.343465 ACAACCGTCACCTGGTCTAAG 59.657 52.381 0.00 0.00 39.29 2.18
507 711 0.320697 AACCGTCACCTGGTCTAAGC 59.679 55.000 0.00 0.00 39.29 3.09
508 712 0.830444 ACCGTCACCTGGTCTAAGCA 60.830 55.000 0.00 0.00 33.35 3.91
509 713 0.537188 CCGTCACCTGGTCTAAGCAT 59.463 55.000 0.00 0.00 0.00 3.79
510 714 1.754803 CCGTCACCTGGTCTAAGCATA 59.245 52.381 0.00 0.00 0.00 3.14
511 715 2.481449 CCGTCACCTGGTCTAAGCATAC 60.481 54.545 0.00 0.00 0.00 2.39
512 716 2.427453 CGTCACCTGGTCTAAGCATACT 59.573 50.000 0.00 0.00 0.00 2.12
513 717 3.489398 CGTCACCTGGTCTAAGCATACTC 60.489 52.174 0.00 0.00 0.00 2.59
514 718 3.702045 GTCACCTGGTCTAAGCATACTCT 59.298 47.826 0.00 0.00 0.00 3.24
515 719 3.701542 TCACCTGGTCTAAGCATACTCTG 59.298 47.826 0.00 0.00 0.00 3.35
516 720 3.449018 CACCTGGTCTAAGCATACTCTGT 59.551 47.826 0.00 0.00 0.00 3.41
517 721 4.645136 CACCTGGTCTAAGCATACTCTGTA 59.355 45.833 0.00 0.00 0.00 2.74
518 722 4.890581 ACCTGGTCTAAGCATACTCTGTAG 59.109 45.833 0.00 0.00 0.00 2.74
519 723 5.133941 CCTGGTCTAAGCATACTCTGTAGA 58.866 45.833 0.00 0.00 0.00 2.59
520 724 5.772672 CCTGGTCTAAGCATACTCTGTAGAT 59.227 44.000 0.00 0.00 0.00 1.98
521 725 6.294453 CCTGGTCTAAGCATACTCTGTAGATG 60.294 46.154 0.00 0.00 0.00 2.90
522 726 5.536538 TGGTCTAAGCATACTCTGTAGATGG 59.463 44.000 0.00 0.00 0.00 3.51
523 727 5.047660 GGTCTAAGCATACTCTGTAGATGGG 60.048 48.000 0.00 0.00 0.00 4.00
524 728 5.770663 GTCTAAGCATACTCTGTAGATGGGA 59.229 44.000 0.00 0.00 0.00 4.37
525 729 6.007076 TCTAAGCATACTCTGTAGATGGGAG 58.993 44.000 0.00 0.00 0.00 4.30
526 730 4.461450 AGCATACTCTGTAGATGGGAGA 57.539 45.455 0.00 0.00 0.00 3.71
527 731 4.406456 AGCATACTCTGTAGATGGGAGAG 58.594 47.826 0.00 0.00 39.38 3.20
528 732 4.141041 AGCATACTCTGTAGATGGGAGAGT 60.141 45.833 0.00 0.00 46.45 3.24
532 736 4.993028 ACTCTGTAGATGGGAGAGTATCC 58.007 47.826 0.00 0.00 43.70 2.59
542 746 0.671251 GAGAGTATCCAGTGCTCCCG 59.329 60.000 0.00 0.00 40.09 5.14
543 747 0.259065 AGAGTATCCAGTGCTCCCGA 59.741 55.000 0.00 0.00 40.09 5.14
544 748 0.386113 GAGTATCCAGTGCTCCCGAC 59.614 60.000 0.00 0.00 33.88 4.79
545 749 1.065928 GTATCCAGTGCTCCCGACG 59.934 63.158 0.00 0.00 0.00 5.12
546 750 2.782222 TATCCAGTGCTCCCGACGC 61.782 63.158 0.00 0.00 0.00 5.19
548 752 4.379243 CCAGTGCTCCCGACGCTT 62.379 66.667 0.00 0.00 0.00 4.68
549 753 2.571757 CAGTGCTCCCGACGCTTA 59.428 61.111 0.00 0.00 0.00 3.09
550 754 1.080093 CAGTGCTCCCGACGCTTAA 60.080 57.895 0.00 0.00 0.00 1.85
551 755 0.669318 CAGTGCTCCCGACGCTTAAA 60.669 55.000 0.00 0.00 0.00 1.52
552 756 0.249398 AGTGCTCCCGACGCTTAAAT 59.751 50.000 0.00 0.00 0.00 1.40
553 757 0.373716 GTGCTCCCGACGCTTAAATG 59.626 55.000 0.00 0.00 0.00 2.32
554 758 1.352056 GCTCCCGACGCTTAAATGC 59.648 57.895 0.00 0.00 0.00 3.56
555 759 1.090052 GCTCCCGACGCTTAAATGCT 61.090 55.000 0.00 0.00 0.00 3.79
556 760 1.805120 GCTCCCGACGCTTAAATGCTA 60.805 52.381 0.00 0.00 0.00 3.49
557 761 1.859080 CTCCCGACGCTTAAATGCTAC 59.141 52.381 0.00 0.00 0.00 3.58
558 762 0.935196 CCCGACGCTTAAATGCTACC 59.065 55.000 0.00 0.00 0.00 3.18
559 763 0.575390 CCGACGCTTAAATGCTACCG 59.425 55.000 0.00 0.00 0.00 4.02
560 764 1.274596 CGACGCTTAAATGCTACCGT 58.725 50.000 0.00 0.00 0.00 4.83
561 765 1.006391 CGACGCTTAAATGCTACCGTG 60.006 52.381 0.00 0.00 0.00 4.94
562 766 2.264813 GACGCTTAAATGCTACCGTGA 58.735 47.619 0.00 0.00 0.00 4.35
563 767 1.997606 ACGCTTAAATGCTACCGTGAC 59.002 47.619 0.00 0.00 0.00 3.67
564 768 1.996898 CGCTTAAATGCTACCGTGACA 59.003 47.619 0.00 0.00 0.00 3.58
565 769 2.222729 CGCTTAAATGCTACCGTGACAC 60.223 50.000 0.00 0.00 0.00 3.67
566 770 2.222729 GCTTAAATGCTACCGTGACACG 60.223 50.000 21.02 21.02 42.11 4.49
575 779 4.169102 CGTGACACGGACATCTGG 57.831 61.111 20.26 0.00 38.08 3.86
576 780 1.446099 CGTGACACGGACATCTGGG 60.446 63.158 20.26 0.00 38.08 4.45
577 781 1.741770 GTGACACGGACATCTGGGC 60.742 63.158 0.00 0.00 0.00 5.36
578 782 2.125106 GACACGGACATCTGGGCC 60.125 66.667 0.00 0.00 0.00 5.80
582 786 4.873129 CGGACATCTGGGCCGTCG 62.873 72.222 0.00 0.00 40.17 5.12
583 787 3.458163 GGACATCTGGGCCGTCGA 61.458 66.667 0.00 0.00 0.00 4.20
584 788 2.577059 GACATCTGGGCCGTCGAA 59.423 61.111 0.00 0.00 0.00 3.71
585 789 1.144057 GACATCTGGGCCGTCGAAT 59.856 57.895 0.00 0.00 0.00 3.34
586 790 0.462047 GACATCTGGGCCGTCGAATT 60.462 55.000 0.00 0.00 0.00 2.17
587 791 0.462047 ACATCTGGGCCGTCGAATTC 60.462 55.000 0.00 0.00 0.00 2.17
588 792 0.179073 CATCTGGGCCGTCGAATTCT 60.179 55.000 3.52 0.00 0.00 2.40
589 793 0.541863 ATCTGGGCCGTCGAATTCTT 59.458 50.000 3.52 0.00 0.00 2.52
590 794 1.187974 TCTGGGCCGTCGAATTCTTA 58.812 50.000 3.52 0.00 0.00 2.10
591 795 1.136305 TCTGGGCCGTCGAATTCTTAG 59.864 52.381 3.52 0.00 0.00 2.18
592 796 1.136305 CTGGGCCGTCGAATTCTTAGA 59.864 52.381 3.52 0.00 0.00 2.10
593 797 1.760613 TGGGCCGTCGAATTCTTAGAT 59.239 47.619 3.52 0.00 0.00 1.98
594 798 2.223971 TGGGCCGTCGAATTCTTAGATC 60.224 50.000 3.52 0.00 0.00 2.75
595 799 2.223971 GGGCCGTCGAATTCTTAGATCA 60.224 50.000 3.52 0.00 0.00 2.92
596 800 3.053455 GGCCGTCGAATTCTTAGATCAG 58.947 50.000 3.52 0.00 0.00 2.90
597 801 3.243434 GGCCGTCGAATTCTTAGATCAGA 60.243 47.826 3.52 0.00 0.00 3.27
598 802 3.731717 GCCGTCGAATTCTTAGATCAGAC 59.268 47.826 3.52 0.27 0.00 3.51
599 803 3.969352 CCGTCGAATTCTTAGATCAGACG 59.031 47.826 16.40 16.40 46.38 4.18
600 804 3.969352 CGTCGAATTCTTAGATCAGACGG 59.031 47.826 15.86 3.41 44.11 4.79
601 805 3.731717 GTCGAATTCTTAGATCAGACGGC 59.268 47.826 3.52 0.00 0.00 5.68
602 806 3.380320 TCGAATTCTTAGATCAGACGGCA 59.620 43.478 3.52 0.00 0.00 5.69
603 807 4.038042 TCGAATTCTTAGATCAGACGGCAT 59.962 41.667 3.52 0.00 0.00 4.40
604 808 4.384247 CGAATTCTTAGATCAGACGGCATC 59.616 45.833 3.52 0.00 0.00 3.91
605 809 3.735237 TTCTTAGATCAGACGGCATCC 57.265 47.619 0.00 0.00 0.00 3.51
622 826 3.651206 CATCCGAGAGATGTTGGATCTG 58.349 50.000 0.00 0.00 46.32 2.90
623 827 1.410517 TCCGAGAGATGTTGGATCTGC 59.589 52.381 0.00 0.00 0.00 4.26
624 828 1.411977 CCGAGAGATGTTGGATCTGCT 59.588 52.381 0.00 0.00 0.00 4.24
625 829 2.471818 CGAGAGATGTTGGATCTGCTG 58.528 52.381 0.00 0.00 0.00 4.41
626 830 2.802415 CGAGAGATGTTGGATCTGCTGG 60.802 54.545 0.00 0.00 0.00 4.85
627 831 2.433604 GAGAGATGTTGGATCTGCTGGA 59.566 50.000 0.00 0.00 0.00 3.86
628 832 2.170187 AGAGATGTTGGATCTGCTGGAC 59.830 50.000 0.00 0.00 0.00 4.02
629 833 1.211457 AGATGTTGGATCTGCTGGACC 59.789 52.381 0.00 0.00 0.00 4.46
630 834 1.211457 GATGTTGGATCTGCTGGACCT 59.789 52.381 0.00 0.00 0.00 3.85
631 835 1.951209 TGTTGGATCTGCTGGACCTA 58.049 50.000 0.00 0.00 0.00 3.08
632 836 2.481441 TGTTGGATCTGCTGGACCTAT 58.519 47.619 0.00 0.00 0.00 2.57
633 837 2.171237 TGTTGGATCTGCTGGACCTATG 59.829 50.000 0.00 0.00 0.00 2.23
634 838 0.761187 TGGATCTGCTGGACCTATGC 59.239 55.000 0.00 0.00 0.00 3.14
635 839 0.320247 GGATCTGCTGGACCTATGCG 60.320 60.000 0.00 0.00 0.00 4.73
636 840 0.948141 GATCTGCTGGACCTATGCGC 60.948 60.000 0.00 0.00 0.00 6.09
637 841 1.689243 ATCTGCTGGACCTATGCGCA 61.689 55.000 14.96 14.96 0.00 6.09
638 842 1.450134 CTGCTGGACCTATGCGCAA 60.450 57.895 17.11 2.72 0.00 4.85
639 843 0.816825 CTGCTGGACCTATGCGCAAT 60.817 55.000 17.11 5.81 0.00 3.56
640 844 0.394216 TGCTGGACCTATGCGCAATT 60.394 50.000 17.11 0.00 0.00 2.32
641 845 0.740737 GCTGGACCTATGCGCAATTT 59.259 50.000 17.11 0.00 0.00 1.82
642 846 1.134946 GCTGGACCTATGCGCAATTTT 59.865 47.619 17.11 0.00 0.00 1.82
643 847 2.417243 GCTGGACCTATGCGCAATTTTT 60.417 45.455 17.11 0.00 0.00 1.94
644 848 3.181397 CTGGACCTATGCGCAATTTTTG 58.819 45.455 17.11 0.00 0.00 2.44
645 849 2.822561 TGGACCTATGCGCAATTTTTGA 59.177 40.909 17.11 0.00 0.00 2.69
646 850 3.256879 TGGACCTATGCGCAATTTTTGAA 59.743 39.130 17.11 0.00 0.00 2.69
647 851 3.612423 GGACCTATGCGCAATTTTTGAAC 59.388 43.478 17.11 0.00 0.00 3.18
648 852 4.485163 GACCTATGCGCAATTTTTGAACT 58.515 39.130 17.11 0.00 0.00 3.01
649 853 4.881920 ACCTATGCGCAATTTTTGAACTT 58.118 34.783 17.11 0.00 0.00 2.66
650 854 4.923281 ACCTATGCGCAATTTTTGAACTTC 59.077 37.500 17.11 0.00 0.00 3.01
651 855 4.922692 CCTATGCGCAATTTTTGAACTTCA 59.077 37.500 17.11 0.00 0.00 3.02
652 856 4.713854 ATGCGCAATTTTTGAACTTCAC 57.286 36.364 17.11 0.00 0.00 3.18
653 857 2.533535 TGCGCAATTTTTGAACTTCACG 59.466 40.909 8.16 0.00 0.00 4.35
654 858 2.097444 GCGCAATTTTTGAACTTCACGG 60.097 45.455 0.30 0.00 0.00 4.94
655 859 3.367607 CGCAATTTTTGAACTTCACGGA 58.632 40.909 0.00 0.00 0.00 4.69
656 860 3.421888 CGCAATTTTTGAACTTCACGGAG 59.578 43.478 0.00 0.00 0.00 4.63
657 861 3.735746 GCAATTTTTGAACTTCACGGAGG 59.264 43.478 0.00 0.00 0.00 4.30
658 862 3.643159 ATTTTTGAACTTCACGGAGGC 57.357 42.857 0.00 0.00 0.00 4.70
659 863 2.341846 TTTTGAACTTCACGGAGGCT 57.658 45.000 0.00 0.00 0.00 4.58
660 864 2.341846 TTTGAACTTCACGGAGGCTT 57.658 45.000 0.00 0.00 0.00 4.35
661 865 2.341846 TTGAACTTCACGGAGGCTTT 57.658 45.000 0.00 0.00 0.00 3.51
662 866 2.341846 TGAACTTCACGGAGGCTTTT 57.658 45.000 0.00 0.00 0.00 2.27
663 867 2.650322 TGAACTTCACGGAGGCTTTTT 58.350 42.857 0.00 0.00 0.00 1.94
686 890 5.973899 TGCAAGTATGGCAAAGTTATTGA 57.026 34.783 0.00 0.00 46.27 2.57
687 891 5.953183 TGCAAGTATGGCAAAGTTATTGAG 58.047 37.500 0.00 0.00 46.27 3.02
688 892 5.709631 TGCAAGTATGGCAAAGTTATTGAGA 59.290 36.000 0.00 0.00 46.27 3.27
689 893 6.127925 TGCAAGTATGGCAAAGTTATTGAGAG 60.128 38.462 0.00 0.00 46.27 3.20
690 894 6.261118 CAAGTATGGCAAAGTTATTGAGAGC 58.739 40.000 0.00 0.00 0.00 4.09
691 895 4.884164 AGTATGGCAAAGTTATTGAGAGCC 59.116 41.667 0.00 0.00 40.93 4.70
692 896 2.083774 TGGCAAAGTTATTGAGAGCCG 58.916 47.619 0.00 0.00 43.35 5.52
693 897 2.084546 GGCAAAGTTATTGAGAGCCGT 58.915 47.619 0.00 0.00 0.00 5.68
694 898 2.096013 GGCAAAGTTATTGAGAGCCGTC 59.904 50.000 0.00 0.00 0.00 4.79
695 899 3.003480 GCAAAGTTATTGAGAGCCGTCT 58.997 45.455 0.00 0.00 34.86 4.18
696 900 3.181516 GCAAAGTTATTGAGAGCCGTCTG 60.182 47.826 0.00 0.00 30.97 3.51
697 901 4.245660 CAAAGTTATTGAGAGCCGTCTGA 58.754 43.478 0.00 0.00 30.97 3.27
698 902 4.744795 AAGTTATTGAGAGCCGTCTGAT 57.255 40.909 0.00 0.00 30.97 2.90
699 903 4.314740 AGTTATTGAGAGCCGTCTGATC 57.685 45.455 0.00 0.00 30.97 2.92
700 904 3.957497 AGTTATTGAGAGCCGTCTGATCT 59.043 43.478 0.00 0.00 30.97 2.75
701 905 5.133941 AGTTATTGAGAGCCGTCTGATCTA 58.866 41.667 0.00 0.00 30.97 1.98
702 906 5.594725 AGTTATTGAGAGCCGTCTGATCTAA 59.405 40.000 0.00 0.00 30.97 2.10
703 907 6.096987 AGTTATTGAGAGCCGTCTGATCTAAA 59.903 38.462 0.00 0.00 30.97 1.85
704 908 4.801330 TTGAGAGCCGTCTGATCTAAAA 57.199 40.909 0.00 0.00 30.97 1.52
705 909 4.801330 TGAGAGCCGTCTGATCTAAAAA 57.199 40.909 0.00 0.00 30.97 1.94
706 910 5.344743 TGAGAGCCGTCTGATCTAAAAAT 57.655 39.130 0.00 0.00 30.97 1.82
707 911 5.352284 TGAGAGCCGTCTGATCTAAAAATC 58.648 41.667 0.00 0.00 30.97 2.17
708 912 5.127845 TGAGAGCCGTCTGATCTAAAAATCT 59.872 40.000 0.00 0.00 30.97 2.40
709 913 5.355596 AGAGCCGTCTGATCTAAAAATCTG 58.644 41.667 0.00 0.00 0.00 2.90
710 914 5.127845 AGAGCCGTCTGATCTAAAAATCTGA 59.872 40.000 0.00 0.00 32.99 3.27
711 915 5.112686 AGCCGTCTGATCTAAAAATCTGAC 58.887 41.667 11.61 11.61 44.63 3.51
714 918 5.396750 GTCTGATCTAAAAATCTGACGCC 57.603 43.478 7.76 0.00 41.60 5.68
715 919 4.271291 GTCTGATCTAAAAATCTGACGCCC 59.729 45.833 7.76 0.00 41.60 6.13
716 920 4.081142 TCTGATCTAAAAATCTGACGCCCA 60.081 41.667 0.00 0.00 31.17 5.36
717 921 4.584874 TGATCTAAAAATCTGACGCCCAA 58.415 39.130 0.00 0.00 0.00 4.12
718 922 5.007034 TGATCTAAAAATCTGACGCCCAAA 58.993 37.500 0.00 0.00 0.00 3.28
719 923 5.475220 TGATCTAAAAATCTGACGCCCAAAA 59.525 36.000 0.00 0.00 0.00 2.44
720 924 5.371115 TCTAAAAATCTGACGCCCAAAAG 57.629 39.130 0.00 0.00 0.00 2.27
721 925 2.438868 AAAATCTGACGCCCAAAAGC 57.561 45.000 0.00 0.00 0.00 3.51
722 926 0.603065 AAATCTGACGCCCAAAAGCC 59.397 50.000 0.00 0.00 0.00 4.35
723 927 1.250840 AATCTGACGCCCAAAAGCCC 61.251 55.000 0.00 0.00 0.00 5.19
724 928 3.737172 CTGACGCCCAAAAGCCCG 61.737 66.667 0.00 0.00 0.00 6.13
725 929 4.572571 TGACGCCCAAAAGCCCGT 62.573 61.111 0.00 0.00 36.53 5.28
726 930 2.358984 GACGCCCAAAAGCCCGTA 60.359 61.111 0.00 0.00 33.63 4.02
727 931 1.747745 GACGCCCAAAAGCCCGTAT 60.748 57.895 0.00 0.00 33.63 3.06
728 932 1.712018 GACGCCCAAAAGCCCGTATC 61.712 60.000 0.00 0.00 33.63 2.24
729 933 1.747367 CGCCCAAAAGCCCGTATCA 60.747 57.895 0.00 0.00 0.00 2.15
730 934 1.101049 CGCCCAAAAGCCCGTATCAT 61.101 55.000 0.00 0.00 0.00 2.45
731 935 0.385390 GCCCAAAAGCCCGTATCATG 59.615 55.000 0.00 0.00 0.00 3.07
732 936 1.032014 CCCAAAAGCCCGTATCATGG 58.968 55.000 0.00 0.00 0.00 3.66
733 937 1.684869 CCCAAAAGCCCGTATCATGGT 60.685 52.381 0.00 0.00 0.00 3.55
734 938 2.422235 CCCAAAAGCCCGTATCATGGTA 60.422 50.000 0.00 0.00 0.00 3.25
735 939 2.878406 CCAAAAGCCCGTATCATGGTAG 59.122 50.000 0.00 0.00 0.00 3.18
736 940 2.256117 AAAGCCCGTATCATGGTAGC 57.744 50.000 0.00 0.00 0.00 3.58
737 941 1.128200 AAGCCCGTATCATGGTAGCA 58.872 50.000 0.00 0.00 0.00 3.49
738 942 1.352083 AGCCCGTATCATGGTAGCAT 58.648 50.000 0.40 0.40 0.00 3.79
739 943 1.276421 AGCCCGTATCATGGTAGCATC 59.724 52.381 3.96 0.00 0.00 3.91
740 944 1.276421 GCCCGTATCATGGTAGCATCT 59.724 52.381 3.96 0.00 0.00 2.90
741 945 2.496070 GCCCGTATCATGGTAGCATCTA 59.504 50.000 3.96 0.00 0.00 1.98
742 946 3.056107 GCCCGTATCATGGTAGCATCTAA 60.056 47.826 3.96 0.00 0.00 2.10
743 947 4.748892 CCCGTATCATGGTAGCATCTAAG 58.251 47.826 3.96 2.75 0.00 2.18
744 948 4.382040 CCCGTATCATGGTAGCATCTAAGG 60.382 50.000 3.96 10.78 0.00 2.69
745 949 4.177026 CGTATCATGGTAGCATCTAAGGC 58.823 47.826 3.96 0.00 0.00 4.35
746 950 4.081972 CGTATCATGGTAGCATCTAAGGCT 60.082 45.833 3.96 0.00 45.18 4.58
747 951 4.989875 ATCATGGTAGCATCTAAGGCTT 57.010 40.909 3.96 4.58 42.62 4.35
748 952 4.077300 TCATGGTAGCATCTAAGGCTTG 57.923 45.455 10.69 0.00 42.62 4.01
749 953 3.144506 CATGGTAGCATCTAAGGCTTGG 58.855 50.000 10.69 7.23 42.62 3.61
750 954 2.196595 TGGTAGCATCTAAGGCTTGGT 58.803 47.619 10.69 1.51 42.62 3.67
751 955 3.380393 TGGTAGCATCTAAGGCTTGGTA 58.620 45.455 10.69 0.41 42.62 3.25
752 956 3.388024 TGGTAGCATCTAAGGCTTGGTAG 59.612 47.826 10.69 5.41 42.62 3.18
763 967 2.256117 GCTTGGTAGCACCGGATATT 57.744 50.000 9.46 0.00 46.95 1.28
764 968 2.572290 GCTTGGTAGCACCGGATATTT 58.428 47.619 9.46 0.00 46.95 1.40
765 969 2.949644 GCTTGGTAGCACCGGATATTTT 59.050 45.455 9.46 0.00 46.95 1.82
766 970 3.003378 GCTTGGTAGCACCGGATATTTTC 59.997 47.826 9.46 0.00 46.95 2.29
767 971 3.202829 TGGTAGCACCGGATATTTTCC 57.797 47.619 9.46 2.05 42.58 3.13
768 972 2.158726 TGGTAGCACCGGATATTTTCCC 60.159 50.000 9.46 0.00 42.58 3.97
769 973 2.501261 GTAGCACCGGATATTTTCCCC 58.499 52.381 9.46 0.00 42.06 4.81
770 974 1.222567 AGCACCGGATATTTTCCCCT 58.777 50.000 9.46 0.00 42.06 4.79
771 975 1.569072 AGCACCGGATATTTTCCCCTT 59.431 47.619 9.46 0.00 42.06 3.95
772 976 1.954382 GCACCGGATATTTTCCCCTTC 59.046 52.381 9.46 0.00 42.06 3.46
773 977 2.218603 CACCGGATATTTTCCCCTTCG 58.781 52.381 9.46 0.00 42.06 3.79
774 978 1.841919 ACCGGATATTTTCCCCTTCGT 59.158 47.619 9.46 0.00 42.06 3.85
775 979 3.040477 ACCGGATATTTTCCCCTTCGTA 58.960 45.455 9.46 0.00 42.06 3.43
776 980 3.070590 ACCGGATATTTTCCCCTTCGTAG 59.929 47.826 9.46 0.00 42.06 3.51
777 981 3.322828 CCGGATATTTTCCCCTTCGTAGA 59.677 47.826 0.00 0.00 42.06 2.59
814 1018 1.945819 GCATTTCGCACTTCTCCCTCA 60.946 52.381 0.00 0.00 41.79 3.86
815 1019 2.426522 CATTTCGCACTTCTCCCTCAA 58.573 47.619 0.00 0.00 0.00 3.02
928 1132 2.956964 CGCGCTCGTGGAGGAATC 60.957 66.667 5.56 0.00 0.00 2.52
992 1196 0.601558 GGAGGCCGGGTTTTTCTTTC 59.398 55.000 2.18 0.00 0.00 2.62
3107 3311 0.537188 GCTTCTCTTGGGGATCGTCA 59.463 55.000 0.00 0.00 0.00 4.35
3914 4149 9.742144 CTGTATCTGTTACATATACTACTCCCT 57.258 37.037 17.59 0.00 40.02 4.20
3952 4187 5.003804 CGACAATTAATATGAAGGAGGGGG 58.996 45.833 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.830279 TGACCCGGTCTACTACAGTG 58.170 55.000 18.54 0.00 33.15 3.66
3 4 2.025605 TGATGACCCGGTCTACTACAGT 60.026 50.000 18.54 0.00 33.15 3.55
4 5 2.651455 TGATGACCCGGTCTACTACAG 58.349 52.381 18.54 0.00 33.15 2.74
5 6 2.812836 TGATGACCCGGTCTACTACA 57.187 50.000 18.54 8.43 33.15 2.74
6 7 2.957006 ACATGATGACCCGGTCTACTAC 59.043 50.000 18.54 6.20 33.15 2.73
7 8 2.956333 CACATGATGACCCGGTCTACTA 59.044 50.000 18.54 0.00 33.15 1.82
8 9 1.757118 CACATGATGACCCGGTCTACT 59.243 52.381 18.54 3.54 33.15 2.57
9 10 1.806623 GCACATGATGACCCGGTCTAC 60.807 57.143 18.54 12.23 33.15 2.59
10 11 0.464036 GCACATGATGACCCGGTCTA 59.536 55.000 18.54 5.72 33.15 2.59
11 12 1.221840 GCACATGATGACCCGGTCT 59.778 57.895 18.54 4.29 33.15 3.85
12 13 1.819632 GGCACATGATGACCCGGTC 60.820 63.158 10.96 10.96 0.00 4.79
13 14 1.852157 AAGGCACATGATGACCCGGT 61.852 55.000 0.00 0.00 36.75 5.28
14 15 1.077501 AAGGCACATGATGACCCGG 60.078 57.895 0.00 0.00 36.75 5.73
15 16 1.431488 CGAAGGCACATGATGACCCG 61.431 60.000 0.00 0.00 36.75 5.28
16 17 0.392998 ACGAAGGCACATGATGACCC 60.393 55.000 0.00 0.00 36.75 4.46
17 18 1.009829 GACGAAGGCACATGATGACC 58.990 55.000 0.00 0.00 36.75 4.02
18 19 0.647410 CGACGAAGGCACATGATGAC 59.353 55.000 0.00 0.00 36.02 3.06
19 20 0.460109 CCGACGAAGGCACATGATGA 60.460 55.000 0.00 0.00 0.00 2.92
31 32 3.420214 GATACGCCAGCCCGACGAA 62.420 63.158 0.00 0.00 0.00 3.85
63 64 2.890474 CAATCTTCCCGACGCCCG 60.890 66.667 0.00 0.00 38.18 6.13
97 98 1.336609 GGACGTAAAGGAAGCAGTCGT 60.337 52.381 0.00 0.00 0.00 4.34
102 103 2.489971 CAACAGGACGTAAAGGAAGCA 58.510 47.619 0.00 0.00 0.00 3.91
137 138 3.345808 CTCAACGCCACACCCGTG 61.346 66.667 0.00 0.00 43.21 4.94
140 141 2.668550 GACCTCAACGCCACACCC 60.669 66.667 0.00 0.00 0.00 4.61
141 142 2.781595 ATCGACCTCAACGCCACACC 62.782 60.000 0.00 0.00 0.00 4.16
202 203 2.266055 GCTTCTCCACCTCACCGG 59.734 66.667 0.00 0.00 39.35 5.28
205 206 2.748605 CATATCGCTTCTCCACCTCAC 58.251 52.381 0.00 0.00 0.00 3.51
206 207 1.069204 GCATATCGCTTCTCCACCTCA 59.931 52.381 0.00 0.00 37.77 3.86
222 223 1.004320 AACACGACCAAGGCGCATA 60.004 52.632 10.83 0.00 0.00 3.14
231 232 3.246112 CCCTCCCCAACACGACCA 61.246 66.667 0.00 0.00 0.00 4.02
283 284 4.451150 TGCCATGTCCGGAGTCGC 62.451 66.667 3.06 4.94 34.56 5.19
333 334 1.543065 ATTTTTGCTGCCGCCATGGA 61.543 50.000 18.40 0.00 42.00 3.41
349 350 8.017587 GTTTCATTTAAACGAGCCATTCATTT 57.982 30.769 0.00 0.00 38.27 2.32
364 365 6.603201 CCTTCTCATGCTAGGGTTTCATTTAA 59.397 38.462 0.00 0.00 0.00 1.52
365 366 6.122277 CCTTCTCATGCTAGGGTTTCATTTA 58.878 40.000 0.00 0.00 0.00 1.40
366 367 4.952335 CCTTCTCATGCTAGGGTTTCATTT 59.048 41.667 0.00 0.00 0.00 2.32
369 370 2.239654 CCCTTCTCATGCTAGGGTTTCA 59.760 50.000 14.95 0.00 43.07 2.69
380 381 1.293924 CGTAGCAAGCCCTTCTCATG 58.706 55.000 0.00 0.00 0.00 3.07
386 387 2.359975 GCCACGTAGCAAGCCCTT 60.360 61.111 0.00 0.00 0.00 3.95
392 393 0.179043 TTGTCAAGGCCACGTAGCAA 60.179 50.000 8.54 0.00 0.00 3.91
415 416 1.594293 CTCGTTGCGTGAACCAGGT 60.594 57.895 0.00 0.00 0.00 4.00
416 417 2.317609 CCTCGTTGCGTGAACCAGG 61.318 63.158 0.20 0.20 36.70 4.45
417 418 2.954753 GCCTCGTTGCGTGAACCAG 61.955 63.158 0.00 0.00 0.00 4.00
418 419 2.970324 GCCTCGTTGCGTGAACCA 60.970 61.111 0.00 0.00 0.00 3.67
419 420 2.054140 TTTGCCTCGTTGCGTGAACC 62.054 55.000 0.00 0.00 0.00 3.62
420 421 0.928451 GTTTGCCTCGTTGCGTGAAC 60.928 55.000 0.00 0.00 0.00 3.18
421 422 1.353804 GTTTGCCTCGTTGCGTGAA 59.646 52.632 0.00 0.00 0.00 3.18
422 423 2.539338 GGTTTGCCTCGTTGCGTGA 61.539 57.895 0.00 0.00 0.00 4.35
423 424 2.051345 GGTTTGCCTCGTTGCGTG 60.051 61.111 0.00 0.00 0.00 5.34
424 425 3.284449 GGGTTTGCCTCGTTGCGT 61.284 61.111 0.00 0.00 34.45 5.24
446 650 0.965439 TCATTTCCGGCCCAAACTTG 59.035 50.000 0.00 0.00 0.00 3.16
447 651 1.256812 CTCATTTCCGGCCCAAACTT 58.743 50.000 0.00 0.00 0.00 2.66
448 652 0.112412 ACTCATTTCCGGCCCAAACT 59.888 50.000 0.00 0.00 0.00 2.66
449 653 0.526211 GACTCATTTCCGGCCCAAAC 59.474 55.000 0.00 0.00 0.00 2.93
450 654 0.958382 CGACTCATTTCCGGCCCAAA 60.958 55.000 0.00 0.00 0.00 3.28
451 655 1.376683 CGACTCATTTCCGGCCCAA 60.377 57.895 0.00 0.00 0.00 4.12
452 656 2.267642 CGACTCATTTCCGGCCCA 59.732 61.111 0.00 0.00 0.00 5.36
453 657 1.814169 GACGACTCATTTCCGGCCC 60.814 63.158 0.00 0.00 0.00 5.80
470 674 0.464013 TTGTCCTTTTTGTCCGCCGA 60.464 50.000 0.00 0.00 0.00 5.54
473 677 0.317519 CGGTTGTCCTTTTTGTCCGC 60.318 55.000 0.00 0.00 0.00 5.54
491 695 2.427453 AGTATGCTTAGACCAGGTGACG 59.573 50.000 0.00 0.00 0.00 4.35
492 696 3.702045 AGAGTATGCTTAGACCAGGTGAC 59.298 47.826 0.00 0.00 0.00 3.67
493 697 3.701542 CAGAGTATGCTTAGACCAGGTGA 59.298 47.826 0.00 0.00 0.00 4.02
494 698 3.449018 ACAGAGTATGCTTAGACCAGGTG 59.551 47.826 0.00 0.00 0.00 4.00
495 699 3.714144 ACAGAGTATGCTTAGACCAGGT 58.286 45.455 0.00 0.00 0.00 4.00
496 700 5.133941 TCTACAGAGTATGCTTAGACCAGG 58.866 45.833 0.00 0.00 0.00 4.45
497 701 6.294453 CCATCTACAGAGTATGCTTAGACCAG 60.294 46.154 0.00 0.00 0.00 4.00
498 702 5.536538 CCATCTACAGAGTATGCTTAGACCA 59.463 44.000 0.00 0.00 0.00 4.02
499 703 5.047660 CCCATCTACAGAGTATGCTTAGACC 60.048 48.000 0.00 0.00 0.00 3.85
500 704 5.770663 TCCCATCTACAGAGTATGCTTAGAC 59.229 44.000 0.00 0.00 0.00 2.59
501 705 5.953571 TCCCATCTACAGAGTATGCTTAGA 58.046 41.667 0.00 0.00 0.00 2.10
502 706 6.007076 TCTCCCATCTACAGAGTATGCTTAG 58.993 44.000 0.00 0.00 0.00 2.18
503 707 5.953571 TCTCCCATCTACAGAGTATGCTTA 58.046 41.667 0.00 0.00 0.00 3.09
504 708 4.809193 TCTCCCATCTACAGAGTATGCTT 58.191 43.478 0.00 0.00 0.00 3.91
505 709 4.141041 ACTCTCCCATCTACAGAGTATGCT 60.141 45.833 0.00 0.00 44.14 3.79
506 710 4.148838 ACTCTCCCATCTACAGAGTATGC 58.851 47.826 0.00 0.00 44.14 3.14
510 714 4.417183 TGGATACTCTCCCATCTACAGAGT 59.583 45.833 6.12 6.12 46.86 3.24
511 715 4.991776 TGGATACTCTCCCATCTACAGAG 58.008 47.826 0.00 0.00 44.23 3.35
512 716 4.417183 ACTGGATACTCTCCCATCTACAGA 59.583 45.833 0.00 0.00 44.23 3.41
513 717 4.522405 CACTGGATACTCTCCCATCTACAG 59.478 50.000 0.00 0.00 44.23 2.74
514 718 4.474394 CACTGGATACTCTCCCATCTACA 58.526 47.826 0.00 0.00 44.23 2.74
515 719 3.257127 GCACTGGATACTCTCCCATCTAC 59.743 52.174 0.00 0.00 44.23 2.59
516 720 3.141083 AGCACTGGATACTCTCCCATCTA 59.859 47.826 0.00 0.00 44.23 1.98
517 721 2.090831 AGCACTGGATACTCTCCCATCT 60.091 50.000 0.00 0.00 44.23 2.90
518 722 2.298729 GAGCACTGGATACTCTCCCATC 59.701 54.545 0.00 0.00 44.23 3.51
519 723 2.324541 GAGCACTGGATACTCTCCCAT 58.675 52.381 0.00 0.00 44.23 4.00
520 724 1.689575 GGAGCACTGGATACTCTCCCA 60.690 57.143 0.00 0.00 44.23 4.37
521 725 1.044611 GGAGCACTGGATACTCTCCC 58.955 60.000 0.00 0.00 44.23 4.30
522 726 1.044611 GGGAGCACTGGATACTCTCC 58.955 60.000 0.00 0.00 45.19 3.71
523 727 0.671251 CGGGAGCACTGGATACTCTC 59.329 60.000 0.00 0.00 37.61 3.20
524 728 0.259065 TCGGGAGCACTGGATACTCT 59.741 55.000 0.00 0.00 37.61 3.24
525 729 0.386113 GTCGGGAGCACTGGATACTC 59.614 60.000 0.00 0.00 37.61 2.59
526 730 1.384989 CGTCGGGAGCACTGGATACT 61.385 60.000 0.00 0.00 37.61 2.12
527 731 1.065928 CGTCGGGAGCACTGGATAC 59.934 63.158 0.00 0.00 0.00 2.24
528 732 2.782222 GCGTCGGGAGCACTGGATA 61.782 63.158 0.00 0.00 34.19 2.59
529 733 4.148825 GCGTCGGGAGCACTGGAT 62.149 66.667 0.00 0.00 34.19 3.41
531 735 2.501223 TTAAGCGTCGGGAGCACTGG 62.501 60.000 0.00 0.00 37.01 4.00
532 736 0.669318 TTTAAGCGTCGGGAGCACTG 60.669 55.000 0.00 0.00 37.01 3.66
533 737 0.249398 ATTTAAGCGTCGGGAGCACT 59.751 50.000 0.00 0.00 37.01 4.40
534 738 0.373716 CATTTAAGCGTCGGGAGCAC 59.626 55.000 0.00 0.00 37.01 4.40
535 739 1.366111 GCATTTAAGCGTCGGGAGCA 61.366 55.000 0.00 0.00 37.01 4.26
536 740 1.090052 AGCATTTAAGCGTCGGGAGC 61.090 55.000 0.00 0.00 40.15 4.70
537 741 1.859080 GTAGCATTTAAGCGTCGGGAG 59.141 52.381 0.00 0.00 40.15 4.30
538 742 1.472026 GGTAGCATTTAAGCGTCGGGA 60.472 52.381 0.00 0.00 40.15 5.14
539 743 0.935196 GGTAGCATTTAAGCGTCGGG 59.065 55.000 0.00 0.00 40.15 5.14
540 744 0.575390 CGGTAGCATTTAAGCGTCGG 59.425 55.000 0.00 0.00 40.15 4.79
541 745 1.006391 CACGGTAGCATTTAAGCGTCG 60.006 52.381 0.00 0.00 45.76 5.12
542 746 2.028883 GTCACGGTAGCATTTAAGCGTC 59.971 50.000 0.00 0.00 45.76 5.19
544 748 1.996898 TGTCACGGTAGCATTTAAGCG 59.003 47.619 0.00 0.00 42.03 4.68
545 749 2.222729 CGTGTCACGGTAGCATTTAAGC 60.223 50.000 17.75 0.00 38.08 3.09
546 750 3.634730 CGTGTCACGGTAGCATTTAAG 57.365 47.619 17.75 0.00 38.08 1.85
558 762 1.446099 CCCAGATGTCCGTGTCACG 60.446 63.158 18.54 18.54 42.11 4.35
559 763 1.741770 GCCCAGATGTCCGTGTCAC 60.742 63.158 0.00 0.00 0.00 3.67
560 764 2.662596 GCCCAGATGTCCGTGTCA 59.337 61.111 0.00 0.00 0.00 3.58
561 765 2.125106 GGCCCAGATGTCCGTGTC 60.125 66.667 0.00 0.00 0.00 3.67
562 766 4.082523 CGGCCCAGATGTCCGTGT 62.083 66.667 0.00 0.00 38.47 4.49
566 770 2.311688 ATTCGACGGCCCAGATGTCC 62.312 60.000 0.00 0.00 0.00 4.02
567 771 0.462047 AATTCGACGGCCCAGATGTC 60.462 55.000 0.00 0.00 0.00 3.06
568 772 0.462047 GAATTCGACGGCCCAGATGT 60.462 55.000 0.00 0.00 0.00 3.06
569 773 0.179073 AGAATTCGACGGCCCAGATG 60.179 55.000 0.00 0.00 0.00 2.90
570 774 0.541863 AAGAATTCGACGGCCCAGAT 59.458 50.000 0.00 0.00 0.00 2.90
571 775 1.136305 CTAAGAATTCGACGGCCCAGA 59.864 52.381 0.00 0.00 0.00 3.86
572 776 1.136305 TCTAAGAATTCGACGGCCCAG 59.864 52.381 0.00 0.00 0.00 4.45
573 777 1.187974 TCTAAGAATTCGACGGCCCA 58.812 50.000 0.00 0.00 0.00 5.36
574 778 2.223971 TGATCTAAGAATTCGACGGCCC 60.224 50.000 0.00 0.00 0.00 5.80
575 779 3.053455 CTGATCTAAGAATTCGACGGCC 58.947 50.000 0.00 0.00 0.00 6.13
576 780 3.731717 GTCTGATCTAAGAATTCGACGGC 59.268 47.826 0.00 0.00 0.00 5.68
577 781 3.969352 CGTCTGATCTAAGAATTCGACGG 59.031 47.826 15.86 3.44 39.25 4.79
578 782 3.969352 CCGTCTGATCTAAGAATTCGACG 59.031 47.826 16.40 16.40 41.65 5.12
579 783 3.731717 GCCGTCTGATCTAAGAATTCGAC 59.268 47.826 0.00 0.00 0.00 4.20
580 784 3.380320 TGCCGTCTGATCTAAGAATTCGA 59.620 43.478 0.00 0.00 0.00 3.71
581 785 3.706698 TGCCGTCTGATCTAAGAATTCG 58.293 45.455 0.00 0.00 0.00 3.34
582 786 4.688413 GGATGCCGTCTGATCTAAGAATTC 59.312 45.833 0.00 0.00 0.00 2.17
583 787 4.636249 GGATGCCGTCTGATCTAAGAATT 58.364 43.478 0.00 0.00 0.00 2.17
584 788 3.305676 CGGATGCCGTCTGATCTAAGAAT 60.306 47.826 0.00 0.00 42.73 2.40
585 789 2.034685 CGGATGCCGTCTGATCTAAGAA 59.965 50.000 0.00 0.00 42.73 2.52
586 790 1.609072 CGGATGCCGTCTGATCTAAGA 59.391 52.381 0.00 0.00 42.73 2.10
587 791 2.057503 CGGATGCCGTCTGATCTAAG 57.942 55.000 0.00 0.00 42.73 2.18
602 806 2.036992 GCAGATCCAACATCTCTCGGAT 59.963 50.000 0.00 0.00 41.00 4.18
603 807 1.410517 GCAGATCCAACATCTCTCGGA 59.589 52.381 0.00 0.00 0.00 4.55
604 808 1.411977 AGCAGATCCAACATCTCTCGG 59.588 52.381 0.00 0.00 0.00 4.63
605 809 2.471818 CAGCAGATCCAACATCTCTCG 58.528 52.381 0.00 0.00 0.00 4.04
606 810 2.433604 TCCAGCAGATCCAACATCTCTC 59.566 50.000 0.00 0.00 0.00 3.20
607 811 2.170187 GTCCAGCAGATCCAACATCTCT 59.830 50.000 0.00 0.00 0.00 3.10
608 812 2.559440 GTCCAGCAGATCCAACATCTC 58.441 52.381 0.00 0.00 0.00 2.75
609 813 1.211457 GGTCCAGCAGATCCAACATCT 59.789 52.381 0.00 0.00 0.00 2.90
610 814 1.211457 AGGTCCAGCAGATCCAACATC 59.789 52.381 0.00 0.00 0.00 3.06
611 815 1.293062 AGGTCCAGCAGATCCAACAT 58.707 50.000 0.00 0.00 0.00 2.71
612 816 1.951209 TAGGTCCAGCAGATCCAACA 58.049 50.000 0.00 0.00 0.00 3.33
613 817 2.843701 CATAGGTCCAGCAGATCCAAC 58.156 52.381 0.00 0.00 0.00 3.77
614 818 1.141657 GCATAGGTCCAGCAGATCCAA 59.858 52.381 0.00 0.00 0.00 3.53
615 819 0.761187 GCATAGGTCCAGCAGATCCA 59.239 55.000 0.00 0.00 0.00 3.41
616 820 0.320247 CGCATAGGTCCAGCAGATCC 60.320 60.000 0.00 0.00 0.00 3.36
617 821 0.948141 GCGCATAGGTCCAGCAGATC 60.948 60.000 0.30 0.00 0.00 2.75
618 822 1.070445 GCGCATAGGTCCAGCAGAT 59.930 57.895 0.30 0.00 0.00 2.90
619 823 1.898330 TTGCGCATAGGTCCAGCAGA 61.898 55.000 12.75 0.00 39.11 4.26
620 824 0.816825 ATTGCGCATAGGTCCAGCAG 60.817 55.000 12.75 0.00 39.11 4.24
621 825 0.394216 AATTGCGCATAGGTCCAGCA 60.394 50.000 12.75 0.00 35.90 4.41
622 826 0.740737 AAATTGCGCATAGGTCCAGC 59.259 50.000 12.75 0.00 0.00 4.85
623 827 3.119531 TCAAAAATTGCGCATAGGTCCAG 60.120 43.478 12.75 0.00 0.00 3.86
624 828 2.822561 TCAAAAATTGCGCATAGGTCCA 59.177 40.909 12.75 0.00 0.00 4.02
625 829 3.502191 TCAAAAATTGCGCATAGGTCC 57.498 42.857 12.75 0.00 0.00 4.46
626 830 4.485163 AGTTCAAAAATTGCGCATAGGTC 58.515 39.130 12.75 0.00 0.00 3.85
627 831 4.519540 AGTTCAAAAATTGCGCATAGGT 57.480 36.364 12.75 0.00 0.00 3.08
628 832 4.922692 TGAAGTTCAAAAATTGCGCATAGG 59.077 37.500 12.75 0.00 0.00 2.57
629 833 5.441872 CGTGAAGTTCAAAAATTGCGCATAG 60.442 40.000 12.75 0.00 0.00 2.23
630 834 4.381270 CGTGAAGTTCAAAAATTGCGCATA 59.619 37.500 12.75 2.21 0.00 3.14
631 835 3.182173 CGTGAAGTTCAAAAATTGCGCAT 59.818 39.130 12.75 0.00 0.00 4.73
632 836 2.533535 CGTGAAGTTCAAAAATTGCGCA 59.466 40.909 5.66 5.66 0.00 6.09
633 837 2.097444 CCGTGAAGTTCAAAAATTGCGC 60.097 45.455 7.25 0.00 0.00 6.09
634 838 3.367607 TCCGTGAAGTTCAAAAATTGCG 58.632 40.909 7.25 5.02 0.00 4.85
635 839 3.735746 CCTCCGTGAAGTTCAAAAATTGC 59.264 43.478 7.25 0.00 0.00 3.56
636 840 3.735746 GCCTCCGTGAAGTTCAAAAATTG 59.264 43.478 7.25 0.00 0.00 2.32
637 841 3.636764 AGCCTCCGTGAAGTTCAAAAATT 59.363 39.130 7.25 0.00 0.00 1.82
638 842 3.222603 AGCCTCCGTGAAGTTCAAAAAT 58.777 40.909 7.25 0.00 0.00 1.82
639 843 2.650322 AGCCTCCGTGAAGTTCAAAAA 58.350 42.857 7.25 0.00 0.00 1.94
640 844 2.341846 AGCCTCCGTGAAGTTCAAAA 57.658 45.000 7.25 0.00 0.00 2.44
641 845 2.341846 AAGCCTCCGTGAAGTTCAAA 57.658 45.000 7.25 0.00 0.00 2.69
642 846 2.341846 AAAGCCTCCGTGAAGTTCAA 57.658 45.000 7.25 0.00 0.00 2.69
643 847 2.341846 AAAAGCCTCCGTGAAGTTCA 57.658 45.000 0.08 0.08 0.00 3.18
663 867 6.208402 TCTCAATAACTTTGCCATACTTGCAA 59.792 34.615 0.00 0.00 46.30 4.08
664 868 5.709631 TCTCAATAACTTTGCCATACTTGCA 59.290 36.000 0.00 0.00 36.84 4.08
665 869 6.194796 TCTCAATAACTTTGCCATACTTGC 57.805 37.500 0.00 0.00 0.00 4.01
666 870 6.261118 GCTCTCAATAACTTTGCCATACTTG 58.739 40.000 0.00 0.00 0.00 3.16
667 871 5.358160 GGCTCTCAATAACTTTGCCATACTT 59.642 40.000 0.00 0.00 38.79 2.24
668 872 4.884164 GGCTCTCAATAACTTTGCCATACT 59.116 41.667 0.00 0.00 38.79 2.12
669 873 4.260784 CGGCTCTCAATAACTTTGCCATAC 60.261 45.833 0.00 0.00 38.87 2.39
670 874 3.876914 CGGCTCTCAATAACTTTGCCATA 59.123 43.478 0.00 0.00 38.87 2.74
671 875 2.684881 CGGCTCTCAATAACTTTGCCAT 59.315 45.455 0.00 0.00 38.87 4.40
672 876 2.083774 CGGCTCTCAATAACTTTGCCA 58.916 47.619 0.00 0.00 38.87 4.92
673 877 2.084546 ACGGCTCTCAATAACTTTGCC 58.915 47.619 0.00 0.00 35.94 4.52
674 878 3.003480 AGACGGCTCTCAATAACTTTGC 58.997 45.455 0.00 0.00 0.00 3.68
675 879 4.245660 TCAGACGGCTCTCAATAACTTTG 58.754 43.478 0.00 0.00 0.00 2.77
676 880 4.537135 TCAGACGGCTCTCAATAACTTT 57.463 40.909 0.00 0.00 0.00 2.66
677 881 4.404073 AGATCAGACGGCTCTCAATAACTT 59.596 41.667 0.00 0.00 0.00 2.66
678 882 3.957497 AGATCAGACGGCTCTCAATAACT 59.043 43.478 0.00 0.00 0.00 2.24
679 883 4.314740 AGATCAGACGGCTCTCAATAAC 57.685 45.455 0.00 0.00 0.00 1.89
680 884 6.465439 TTTAGATCAGACGGCTCTCAATAA 57.535 37.500 0.00 0.00 0.00 1.40
681 885 6.465439 TTTTAGATCAGACGGCTCTCAATA 57.535 37.500 0.00 0.00 0.00 1.90
682 886 5.344743 TTTTAGATCAGACGGCTCTCAAT 57.655 39.130 0.00 0.00 0.00 2.57
683 887 4.801330 TTTTAGATCAGACGGCTCTCAA 57.199 40.909 0.00 0.00 0.00 3.02
684 888 4.801330 TTTTTAGATCAGACGGCTCTCA 57.199 40.909 0.00 0.00 0.00 3.27
685 889 5.461737 CAGATTTTTAGATCAGACGGCTCTC 59.538 44.000 0.00 0.00 0.00 3.20
686 890 5.127845 TCAGATTTTTAGATCAGACGGCTCT 59.872 40.000 0.00 0.00 0.00 4.09
687 891 5.233263 GTCAGATTTTTAGATCAGACGGCTC 59.767 44.000 0.00 0.00 34.37 4.70
688 892 5.112686 GTCAGATTTTTAGATCAGACGGCT 58.887 41.667 0.00 0.00 34.37 5.52
689 893 5.396750 GTCAGATTTTTAGATCAGACGGC 57.603 43.478 0.00 0.00 34.37 5.68
692 896 4.271291 GGGCGTCAGATTTTTAGATCAGAC 59.729 45.833 0.00 0.00 38.47 3.51
693 897 4.081142 TGGGCGTCAGATTTTTAGATCAGA 60.081 41.667 0.00 0.00 0.00 3.27
694 898 4.191544 TGGGCGTCAGATTTTTAGATCAG 58.808 43.478 0.00 0.00 0.00 2.90
695 899 4.214986 TGGGCGTCAGATTTTTAGATCA 57.785 40.909 0.00 0.00 0.00 2.92
696 900 5.560966 TTTGGGCGTCAGATTTTTAGATC 57.439 39.130 0.00 0.00 0.00 2.75
697 901 5.622233 GCTTTTGGGCGTCAGATTTTTAGAT 60.622 40.000 0.00 0.00 0.00 1.98
698 902 4.320935 GCTTTTGGGCGTCAGATTTTTAGA 60.321 41.667 0.00 0.00 0.00 2.10
699 903 3.920412 GCTTTTGGGCGTCAGATTTTTAG 59.080 43.478 0.00 0.00 0.00 1.85
700 904 3.305744 GGCTTTTGGGCGTCAGATTTTTA 60.306 43.478 0.00 0.00 0.00 1.52
701 905 2.547855 GGCTTTTGGGCGTCAGATTTTT 60.548 45.455 0.00 0.00 0.00 1.94
702 906 1.000843 GGCTTTTGGGCGTCAGATTTT 59.999 47.619 0.00 0.00 0.00 1.82
703 907 0.603065 GGCTTTTGGGCGTCAGATTT 59.397 50.000 0.00 0.00 0.00 2.17
704 908 1.250840 GGGCTTTTGGGCGTCAGATT 61.251 55.000 0.00 0.00 41.87 2.40
705 909 1.678970 GGGCTTTTGGGCGTCAGAT 60.679 57.895 0.00 0.00 41.87 2.90
706 910 2.282180 GGGCTTTTGGGCGTCAGA 60.282 61.111 0.00 0.00 41.87 3.27
707 911 3.737172 CGGGCTTTTGGGCGTCAG 61.737 66.667 0.00 0.00 41.87 3.51
708 912 2.472414 ATACGGGCTTTTGGGCGTCA 62.472 55.000 0.00 0.00 41.87 4.35
709 913 1.712018 GATACGGGCTTTTGGGCGTC 61.712 60.000 0.00 0.00 41.87 5.19
710 914 1.747745 GATACGGGCTTTTGGGCGT 60.748 57.895 0.00 0.00 41.87 5.68
711 915 1.101049 ATGATACGGGCTTTTGGGCG 61.101 55.000 0.00 0.00 41.87 6.13
712 916 0.385390 CATGATACGGGCTTTTGGGC 59.615 55.000 0.00 0.00 40.05 5.36
713 917 1.032014 CCATGATACGGGCTTTTGGG 58.968 55.000 0.00 0.00 0.00 4.12
714 918 1.762708 ACCATGATACGGGCTTTTGG 58.237 50.000 0.00 0.00 0.00 3.28
715 919 2.290641 GCTACCATGATACGGGCTTTTG 59.709 50.000 0.00 0.00 0.00 2.44
716 920 2.092646 TGCTACCATGATACGGGCTTTT 60.093 45.455 0.00 0.00 0.00 2.27
717 921 1.488812 TGCTACCATGATACGGGCTTT 59.511 47.619 0.00 0.00 0.00 3.51
718 922 1.128200 TGCTACCATGATACGGGCTT 58.872 50.000 0.00 0.00 0.00 4.35
719 923 1.276421 GATGCTACCATGATACGGGCT 59.724 52.381 0.00 0.00 0.00 5.19
720 924 1.276421 AGATGCTACCATGATACGGGC 59.724 52.381 0.00 0.00 0.00 6.13
721 925 4.382040 CCTTAGATGCTACCATGATACGGG 60.382 50.000 0.00 0.00 0.00 5.28
722 926 4.748892 CCTTAGATGCTACCATGATACGG 58.251 47.826 0.00 0.00 0.00 4.02
723 927 4.081972 AGCCTTAGATGCTACCATGATACG 60.082 45.833 0.00 0.00 37.28 3.06
724 928 5.413309 AGCCTTAGATGCTACCATGATAC 57.587 43.478 0.00 0.00 37.28 2.24
725 929 5.280164 CCAAGCCTTAGATGCTACCATGATA 60.280 44.000 0.00 0.00 38.34 2.15
726 930 4.506271 CCAAGCCTTAGATGCTACCATGAT 60.506 45.833 0.00 0.00 38.34 2.45
727 931 3.181451 CCAAGCCTTAGATGCTACCATGA 60.181 47.826 0.00 0.00 38.34 3.07
728 932 3.144506 CCAAGCCTTAGATGCTACCATG 58.855 50.000 0.00 0.00 38.34 3.66
729 933 2.780010 ACCAAGCCTTAGATGCTACCAT 59.220 45.455 0.00 0.00 38.34 3.55
730 934 2.196595 ACCAAGCCTTAGATGCTACCA 58.803 47.619 0.00 0.00 38.34 3.25
731 935 3.804063 GCTACCAAGCCTTAGATGCTACC 60.804 52.174 0.00 0.00 43.40 3.18
732 936 3.394719 GCTACCAAGCCTTAGATGCTAC 58.605 50.000 0.00 0.00 43.40 3.58
733 937 3.753294 GCTACCAAGCCTTAGATGCTA 57.247 47.619 0.00 0.00 43.40 3.49
734 938 2.629336 GCTACCAAGCCTTAGATGCT 57.371 50.000 0.00 0.00 43.40 3.79
744 948 6.042365 GGAAAATATCCGGTGCTACCAAGC 62.042 50.000 0.00 0.00 43.32 4.01
745 949 3.564225 GGAAAATATCCGGTGCTACCAAG 59.436 47.826 0.00 0.00 38.47 3.61
746 950 3.547746 GGAAAATATCCGGTGCTACCAA 58.452 45.455 0.00 0.00 38.47 3.67
747 951 3.202829 GGAAAATATCCGGTGCTACCA 57.797 47.619 0.00 0.00 38.47 3.25
758 962 7.001099 TGGTATCTACGAAGGGGAAAATATC 57.999 40.000 0.00 0.00 0.00 1.63
759 963 7.291651 TCTTGGTATCTACGAAGGGGAAAATAT 59.708 37.037 10.85 0.00 40.84 1.28
760 964 6.612456 TCTTGGTATCTACGAAGGGGAAAATA 59.388 38.462 10.85 0.00 40.84 1.40
761 965 5.427481 TCTTGGTATCTACGAAGGGGAAAAT 59.573 40.000 10.85 0.00 40.84 1.82
762 966 4.778958 TCTTGGTATCTACGAAGGGGAAAA 59.221 41.667 10.85 0.00 40.84 2.29
763 967 4.355549 TCTTGGTATCTACGAAGGGGAAA 58.644 43.478 10.85 0.00 40.84 3.13
764 968 3.985127 TCTTGGTATCTACGAAGGGGAA 58.015 45.455 10.85 0.00 40.84 3.97
765 969 3.675348 TCTTGGTATCTACGAAGGGGA 57.325 47.619 10.85 0.00 40.84 4.81
766 970 4.748277 TTTCTTGGTATCTACGAAGGGG 57.252 45.455 10.85 0.00 40.84 4.79
767 971 5.105064 TCCTTTTCTTGGTATCTACGAAGGG 60.105 44.000 10.85 5.85 40.84 3.95
768 972 5.974108 TCCTTTTCTTGGTATCTACGAAGG 58.026 41.667 10.85 0.00 40.84 3.46
769 973 5.520649 GCTCCTTTTCTTGGTATCTACGAAG 59.479 44.000 5.93 5.93 41.52 3.79
770 974 5.416947 GCTCCTTTTCTTGGTATCTACGAA 58.583 41.667 0.00 0.00 0.00 3.85
771 975 4.439700 CGCTCCTTTTCTTGGTATCTACGA 60.440 45.833 0.00 0.00 0.00 3.43
772 976 3.797256 CGCTCCTTTTCTTGGTATCTACG 59.203 47.826 0.00 0.00 0.00 3.51
773 977 3.556365 GCGCTCCTTTTCTTGGTATCTAC 59.444 47.826 0.00 0.00 0.00 2.59
774 978 3.196901 TGCGCTCCTTTTCTTGGTATCTA 59.803 43.478 9.73 0.00 0.00 1.98
775 979 2.027192 TGCGCTCCTTTTCTTGGTATCT 60.027 45.455 9.73 0.00 0.00 1.98
776 980 2.356135 TGCGCTCCTTTTCTTGGTATC 58.644 47.619 9.73 0.00 0.00 2.24
777 981 2.489938 TGCGCTCCTTTTCTTGGTAT 57.510 45.000 9.73 0.00 0.00 2.73
928 1132 2.776536 ACAGAGGATCCTCAATTCCCAG 59.223 50.000 37.28 20.05 44.99 4.45
992 1196 1.941403 ATCCACCTCCATTGCCCCAG 61.941 60.000 0.00 0.00 0.00 4.45
3107 3311 4.566426 AACTTCTAGCAGCAATCTCCTT 57.434 40.909 0.00 0.00 0.00 3.36
3914 4149 8.942338 ATTAATTGTCGCAGATTTAGTACTGA 57.058 30.769 5.39 0.00 40.67 3.41
3952 4187 6.350629 TCAACAAAGGGAGTTAGGTACTAC 57.649 41.667 0.00 0.00 42.67 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.