Multiple sequence alignment - TraesCS2D01G239800

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G239800 chr2D 100.000 9899 0 0 1 9899 256677463 256667565 0.000000e+00 18281.0
1 TraesCS2D01G239800 chr2D 96.037 328 9 1 3034 3357 598718856 598718529 1.890000e-146 531.0
2 TraesCS2D01G239800 chr2D 90.444 293 16 3 3522 3804 256673658 256673368 9.390000e-100 375.0
3 TraesCS2D01G239800 chr2D 90.444 293 16 3 3806 4096 256673942 256673660 9.390000e-100 375.0
4 TraesCS2D01G239800 chr2D 90.741 108 8 2 1980 2086 79387323 79387429 1.040000e-29 143.0
5 TraesCS2D01G239800 chr2D 85.714 77 3 6 4076 4152 24262656 24262724 3.830000e-09 75.0
6 TraesCS2D01G239800 chr2A 97.362 6140 108 21 3413 9526 252089927 252096038 0.000000e+00 10392.0
7 TraesCS2D01G239800 chr2A 97.788 1718 31 5 810 2523 252087011 252088725 0.000000e+00 2955.0
8 TraesCS2D01G239800 chr2A 94.737 779 14 3 2522 3276 252089148 252089923 0.000000e+00 1186.0
9 TraesCS2D01G239800 chr2A 94.385 374 20 1 9527 9899 252152334 252152707 3.100000e-159 573.0
10 TraesCS2D01G239800 chr2A 89.420 293 20 3 3522 3805 252090324 252090614 9.450000e-95 359.0
11 TraesCS2D01G239800 chr2A 82.493 337 22 14 1 302 252086682 252087016 2.740000e-65 261.0
12 TraesCS2D01G239800 chr2A 97.436 39 0 1 4099 4137 87851896 87851859 2.310000e-06 65.8
13 TraesCS2D01G239800 chr2B 94.811 3411 78 33 6053 9414 288939392 288936032 0.000000e+00 5227.0
14 TraesCS2D01G239800 chr2B 95.061 1397 47 7 4679 6060 288941037 288939648 0.000000e+00 2178.0
15 TraesCS2D01G239800 chr2B 96.670 1051 19 7 943 1985 288944858 288943816 0.000000e+00 1733.0
16 TraesCS2D01G239800 chr2B 95.258 949 26 6 2084 3032 288943815 288942886 0.000000e+00 1485.0
17 TraesCS2D01G239800 chr2B 91.254 949 39 26 3747 4687 288942136 288941224 0.000000e+00 1253.0
18 TraesCS2D01G239800 chr2B 91.631 466 32 3 9436 9899 288934894 288934434 1.080000e-178 638.0
19 TraesCS2D01G239800 chr2B 94.595 333 12 3 3034 3360 726552671 726552339 2.470000e-140 510.0
20 TraesCS2D01G239800 chr2B 93.030 330 19 1 3034 3359 563086773 563087102 6.950000e-131 479.0
21 TraesCS2D01G239800 chr2B 90.657 289 16 4 3527 3805 288942073 288941786 3.380000e-99 374.0
22 TraesCS2D01G239800 chr2B 94.043 235 14 0 3495 3729 288942689 288942455 3.400000e-94 357.0
23 TraesCS2D01G239800 chr2B 89.020 255 15 7 1 242 23367367 23367113 4.490000e-78 303.0
24 TraesCS2D01G239800 chr2B 89.908 218 10 3 3806 4021 288942662 288942455 4.560000e-68 270.0
25 TraesCS2D01G239800 chr2B 76.493 519 80 21 303 791 40459718 40459212 2.760000e-60 244.0
26 TraesCS2D01G239800 chr2B 91.824 159 10 2 3357 3512 288942871 288942713 1.670000e-52 219.0
27 TraesCS2D01G239800 chr2B 92.647 136 9 1 815 950 288945216 288945082 2.820000e-45 195.0
28 TraesCS2D01G239800 chr2B 88.350 103 9 3 140 241 734502677 734502777 4.860000e-23 121.0
29 TraesCS2D01G239800 chr6B 93.694 333 13 3 3034 3359 485115435 485115766 8.930000e-135 492.0
30 TraesCS2D01G239800 chr6B 93.353 331 15 4 3034 3357 558517485 558517155 5.380000e-132 483.0
31 TraesCS2D01G239800 chr6B 85.246 122 10 4 1972 2086 59870679 59870799 1.750000e-22 119.0
32 TraesCS2D01G239800 chr6B 86.364 110 5 3 1980 2089 347752136 347752037 2.920000e-20 111.0
33 TraesCS2D01G239800 chr7B 93.617 329 14 4 3036 3357 330538513 330538841 1.490000e-132 484.0
34 TraesCS2D01G239800 chr7B 87.805 246 21 5 1 241 159578821 159578580 7.570000e-71 279.0
35 TraesCS2D01G239800 chr7B 79.167 216 26 10 353 558 604367194 604366988 2.240000e-26 132.0
36 TraesCS2D01G239800 chr7B 91.489 47 1 1 4104 4150 184347740 184347783 2.990000e-05 62.1
37 TraesCS2D01G239800 chr1D 93.827 324 15 3 3038 3357 397166016 397165694 5.380000e-132 483.0
38 TraesCS2D01G239800 chr1D 85.634 355 48 3 2176 2529 150939035 150939387 4.370000e-98 370.0
39 TraesCS2D01G239800 chr1D 89.820 167 13 4 5779 5943 156133333 156133497 2.800000e-50 211.0
40 TraesCS2D01G239800 chr1D 89.404 151 15 1 5789 5938 351254860 351254710 1.310000e-43 189.0
41 TraesCS2D01G239800 chr1D 88.608 158 14 3 5783 5939 386431955 386432109 1.310000e-43 189.0
42 TraesCS2D01G239800 chr1D 88.312 154 17 1 5786 5938 314705605 314705758 6.110000e-42 183.0
43 TraesCS2D01G239800 chr1D 87.097 155 16 4 5787 5938 314013536 314013689 1.320000e-38 172.0
44 TraesCS2D01G239800 chr1D 87.162 148 17 1 5786 5933 289395171 289395026 6.150000e-37 167.0
45 TraesCS2D01G239800 chr1D 88.806 134 15 0 5787 5920 95869004 95869137 2.210000e-36 165.0
46 TraesCS2D01G239800 chr1D 86.000 150 19 2 5786 5934 248986284 248986136 1.030000e-34 159.0
47 TraesCS2D01G239800 chr1D 87.050 139 14 3 5802 5938 359723387 359723523 4.790000e-33 154.0
48 TraesCS2D01G239800 chr1D 90.323 93 8 1 151 242 318572715 318572807 4.860000e-23 121.0
49 TraesCS2D01G239800 chr1D 90.110 91 8 1 153 242 326239684 326239594 6.280000e-22 117.0
50 TraesCS2D01G239800 chr1D 96.667 60 2 0 2029 2088 335585067 335585126 6.330000e-17 100.0
51 TraesCS2D01G239800 chr1D 83.898 118 3 2 1970 2086 354500795 354500693 2.280000e-16 99.0
52 TraesCS2D01G239800 chr1D 95.082 61 3 0 2029 2089 3956359 3956419 8.180000e-16 97.1
53 TraesCS2D01G239800 chr1D 95.082 61 3 0 2029 2089 124334394 124334334 8.180000e-16 97.1
54 TraesCS2D01G239800 chr1D 96.429 56 2 0 2031 2086 90207975 90208030 1.060000e-14 93.5
55 TraesCS2D01G239800 chr1D 94.915 59 3 0 2029 2087 115989980 115989922 1.060000e-14 93.5
56 TraesCS2D01G239800 chr1D 96.429 56 2 0 2031 2086 121317067 121317012 1.060000e-14 93.5
57 TraesCS2D01G239800 chr1D 94.915 59 3 0 2031 2089 286707490 286707548 1.060000e-14 93.5
58 TraesCS2D01G239800 chr1D 94.915 59 3 0 2029 2087 363804199 363804257 1.060000e-14 93.5
59 TraesCS2D01G239800 chr1D 94.915 59 3 0 2030 2088 409047081 409047139 1.060000e-14 93.5
60 TraesCS2D01G239800 chr1D 94.828 58 3 0 2029 2086 47644770 47644827 3.810000e-14 91.6
61 TraesCS2D01G239800 chr1D 98.039 51 1 0 1977 2027 473778157 473778107 1.370000e-13 89.8
62 TraesCS2D01G239800 chr1D 98.000 50 1 0 1978 2027 35756866 35756915 4.930000e-13 87.9
63 TraesCS2D01G239800 chr1D 98.000 50 1 0 1978 2027 252473144 252473193 4.930000e-13 87.9
64 TraesCS2D01G239800 chr1D 98.000 50 1 0 1978 2027 295954214 295954263 4.930000e-13 87.9
65 TraesCS2D01G239800 chr1D 97.959 49 1 0 1977 2025 355167812 355167764 1.770000e-12 86.1
66 TraesCS2D01G239800 chr1D 97.959 49 1 0 1979 2027 440050443 440050395 1.770000e-12 86.1
67 TraesCS2D01G239800 chr1D 93.220 59 3 1 1970 2027 493918227 493918285 1.770000e-12 86.1
68 TraesCS2D01G239800 chr1D 90.323 62 6 0 180 241 85780358 85780297 2.290000e-11 82.4
69 TraesCS2D01G239800 chr1D 93.617 47 3 0 2777 2823 27944935 27944981 4.960000e-08 71.3
70 TraesCS2D01G239800 chr1D 100.000 31 0 0 5786 5816 7349856 7349826 3.860000e-04 58.4
71 TraesCS2D01G239800 chr1D 100.000 31 0 0 5786 5816 422057578 422057548 3.860000e-04 58.4
72 TraesCS2D01G239800 chr1A 93.313 329 14 3 3034 3357 313906540 313906865 6.950000e-131 479.0
73 TraesCS2D01G239800 chr1A 90.850 153 13 1 5787 5938 459273231 459273383 4.690000e-48 204.0
74 TraesCS2D01G239800 chr5D 93.313 329 12 4 3034 3357 456613589 456613266 2.500000e-130 477.0
75 TraesCS2D01G239800 chr5D 90.909 154 11 2 5787 5939 528717428 528717277 4.690000e-48 204.0
76 TraesCS2D01G239800 chr5D 89.032 155 16 1 5785 5938 347443723 347443877 3.650000e-44 191.0
77 TraesCS2D01G239800 chr5D 87.755 98 8 3 148 243 445992551 445992456 2.920000e-20 111.0
78 TraesCS2D01G239800 chr5D 85.321 109 10 2 1978 2086 459765858 459765960 3.780000e-19 108.0
79 TraesCS2D01G239800 chr5B 87.390 341 43 0 2179 2519 400094363 400094703 9.320000e-105 392.0
80 TraesCS2D01G239800 chr5B 90.909 154 11 2 5787 5939 665744619 665744468 4.690000e-48 204.0
81 TraesCS2D01G239800 chr5B 89.241 158 16 1 5785 5941 403708733 403708576 7.840000e-46 196.0
82 TraesCS2D01G239800 chr5B 89.130 92 9 1 151 241 547907513 547907604 8.130000e-21 113.0
83 TraesCS2D01G239800 chr5B 88.043 92 10 1 151 241 163083648 163083739 3.780000e-19 108.0
84 TraesCS2D01G239800 chr5B 88.506 87 9 1 159 244 547971695 547971609 4.890000e-18 104.0
85 TraesCS2D01G239800 chr3B 86.686 353 43 4 2178 2529 293747993 293747644 1.210000e-103 388.0
86 TraesCS2D01G239800 chr3B 86.275 357 44 4 2177 2529 694031620 694031265 5.610000e-102 383.0
87 TraesCS2D01G239800 chr3B 90.506 158 13 2 5786 5941 396272032 396271875 3.620000e-49 207.0
88 TraesCS2D01G239800 chr3B 89.937 159 14 2 5784 5940 135687301 135687459 4.690000e-48 204.0
89 TraesCS2D01G239800 chr3B 89.441 161 16 1 5787 5946 245935613 245935453 1.690000e-47 202.0
90 TraesCS2D01G239800 chr3B 89.524 105 10 1 1980 2083 636441535 636441639 2.240000e-26 132.0
91 TraesCS2D01G239800 chr3B 91.011 89 7 1 155 242 450873412 450873500 1.750000e-22 119.0
92 TraesCS2D01G239800 chr3B 89.474 95 6 2 148 242 660680109 660680199 6.280000e-22 117.0
93 TraesCS2D01G239800 chr1B 86.517 356 43 5 2176 2529 231642977 231643329 4.340000e-103 387.0
94 TraesCS2D01G239800 chr1B 89.375 160 16 1 5780 5939 632020920 632021078 6.060000e-47 200.0
95 TraesCS2D01G239800 chr1B 90.805 87 7 1 156 241 112350518 112350604 2.260000e-21 115.0
96 TraesCS2D01G239800 chr1B 89.011 91 7 2 153 241 331509068 331509157 1.050000e-19 110.0
97 TraesCS2D01G239800 chr1B 86.517 89 11 1 156 243 471808181 471808269 8.180000e-16 97.1
98 TraesCS2D01G239800 chr6D 86.325 351 47 1 2177 2526 365846884 365847234 2.020000e-101 381.0
99 TraesCS2D01G239800 chr6D 90.506 158 13 2 5783 5939 392273229 392273073 3.620000e-49 207.0
100 TraesCS2D01G239800 chr6D 89.032 155 16 1 5786 5939 410398278 410398432 3.650000e-44 191.0
101 TraesCS2D01G239800 chr6D 88.462 156 17 1 5786 5940 256728603 256728448 4.720000e-43 187.0
102 TraesCS2D01G239800 chr6D 88.462 156 17 1 5786 5940 256729400 256729245 4.720000e-43 187.0
103 TraesCS2D01G239800 chr6D 89.404 151 13 2 5787 5934 364493571 364493721 4.720000e-43 187.0
104 TraesCS2D01G239800 chr6D 87.850 107 8 4 1980 2086 458995182 458995283 4.860000e-23 121.0
105 TraesCS2D01G239800 chr6D 96.774 62 2 0 2029 2090 392274218 392274279 4.890000e-18 104.0
106 TraesCS2D01G239800 chr6D 92.647 68 5 0 2029 2096 20145783 20145716 2.280000e-16 99.0
107 TraesCS2D01G239800 chr6D 95.161 62 3 0 2029 2090 456406430 456406369 2.280000e-16 99.0
108 TraesCS2D01G239800 chr6D 96.552 58 2 0 2029 2086 462762767 462762824 8.180000e-16 97.1
109 TraesCS2D01G239800 chr6D 85.417 96 8 4 1977 2071 443846653 443846563 2.940000e-15 95.3
110 TraesCS2D01G239800 chr6D 100.000 48 0 0 1980 2027 62245401 62245354 1.370000e-13 89.8
111 TraesCS2D01G239800 chr6D 94.737 57 1 2 1972 2027 353105851 353105796 4.930000e-13 87.9
112 TraesCS2D01G239800 chr6D 96.154 52 2 0 1976 2027 387886078 387886027 1.770000e-12 86.1
113 TraesCS2D01G239800 chr3D 86.119 353 45 4 2178 2529 219574862 219574513 2.610000e-100 377.0
114 TraesCS2D01G239800 chr3D 90.506 158 14 1 5784 5940 85449365 85449522 3.620000e-49 207.0
115 TraesCS2D01G239800 chr3D 90.506 158 13 2 5786 5941 322435445 322435288 3.620000e-49 207.0
116 TraesCS2D01G239800 chr3D 90.196 153 14 1 5787 5938 441388819 441388667 2.180000e-46 198.0
117 TraesCS2D01G239800 chr3D 88.199 161 18 1 5787 5946 170547101 170546941 3.650000e-44 191.0
118 TraesCS2D01G239800 chr3D 87.603 121 4 6 1973 2086 94644748 94644864 8.070000e-26 130.0
119 TraesCS2D01G239800 chr3D 87.719 114 10 1 1979 2088 609741024 609740911 8.070000e-26 130.0
120 TraesCS2D01G239800 chr3D 87.629 97 10 2 151 245 266377609 266377705 2.920000e-20 111.0
121 TraesCS2D01G239800 chr3D 95.385 65 3 0 2029 2093 441134544 441134480 4.890000e-18 104.0
122 TraesCS2D01G239800 chr3D 92.157 51 1 2 4105 4152 423379170 423379220 1.780000e-07 69.4
123 TraesCS2D01G239800 chr3D 89.583 48 3 2 4105 4151 600262785 600262739 1.070000e-04 60.2
124 TraesCS2D01G239800 chr3A 91.257 183 14 2 63 243 705114957 705115139 2.140000e-61 248.0
125 TraesCS2D01G239800 chr3A 85.841 113 15 1 1974 2086 456381674 456381785 1.750000e-22 119.0
126 TraesCS2D01G239800 chr3A 87.255 102 11 2 142 242 546302332 546302232 2.260000e-21 115.0
127 TraesCS2D01G239800 chr3A 94.000 50 0 3 4105 4151 565473196 565473147 1.380000e-08 73.1
128 TraesCS2D01G239800 chr6A 89.595 173 16 2 63 233 421525276 421525104 1.670000e-52 219.0
129 TraesCS2D01G239800 chr6A 86.607 112 7 2 1980 2090 84900215 84900111 6.280000e-22 117.0
130 TraesCS2D01G239800 chr6A 90.000 90 8 1 153 241 571607587 571607676 2.260000e-21 115.0
131 TraesCS2D01G239800 chr6A 85.586 111 10 3 1980 2086 511529501 511529393 2.920000e-20 111.0
132 TraesCS2D01G239800 chr4D 84.932 219 24 5 343 559 337463615 337463826 7.790000e-51 213.0
133 TraesCS2D01G239800 chr4D 90.260 154 13 2 5787 5938 74079504 74079351 6.060000e-47 200.0
134 TraesCS2D01G239800 chr4D 88.679 159 17 1 5787 5944 341693403 341693245 1.010000e-44 193.0
135 TraesCS2D01G239800 chr4D 88.199 161 17 2 5787 5945 119822900 119822740 3.650000e-44 191.0
136 TraesCS2D01G239800 chr4D 85.455 110 10 1 1977 2086 350506825 350506928 1.050000e-19 110.0
137 TraesCS2D01G239800 chr4D 95.161 62 3 0 2029 2090 371926871 371926810 2.280000e-16 99.0
138 TraesCS2D01G239800 chr4D 98.113 53 1 0 1975 2027 236940216 236940164 1.060000e-14 93.5
139 TraesCS2D01G239800 chr4D 96.429 56 1 1 1973 2027 38445646 38445591 3.810000e-14 91.6
140 TraesCS2D01G239800 chr4D 94.828 58 2 1 1971 2027 455628565 455628508 1.370000e-13 89.8
141 TraesCS2D01G239800 chr4D 92.063 63 4 1 1966 2027 478671951 478671889 4.930000e-13 87.9
142 TraesCS2D01G239800 chr7D 90.566 159 13 2 5787 5943 535326813 535326655 1.010000e-49 209.0
143 TraesCS2D01G239800 chr7D 90.850 153 13 1 5787 5938 34373470 34373318 4.690000e-48 204.0
144 TraesCS2D01G239800 chr7D 86.034 179 22 3 64 241 502814549 502814725 1.310000e-43 189.0
145 TraesCS2D01G239800 chr7D 87.755 98 7 4 148 243 598869927 598870021 1.050000e-19 110.0
146 TraesCS2D01G239800 chr7D 100.000 41 0 0 4879 4919 481827223 481827263 1.070000e-09 76.8
147 TraesCS2D01G239800 chr4B 92.000 150 11 1 5790 5938 146469365 146469216 1.010000e-49 209.0
148 TraesCS2D01G239800 chr4B 79.828 233 46 1 560 791 389961932 389961700 1.710000e-37 169.0
149 TraesCS2D01G239800 chrUn 88.608 158 14 3 5783 5939 480163317 480163471 1.310000e-43 189.0
150 TraesCS2D01G239800 chrUn 100.000 52 0 0 1976 2027 378270656 378270605 8.180000e-16 97.1
151 TraesCS2D01G239800 chrUn 100.000 52 0 0 1976 2027 447954258 447954309 8.180000e-16 97.1
152 TraesCS2D01G239800 chrUn 100.000 50 0 0 1976 2025 49143752 49143801 1.060000e-14 93.5
153 TraesCS2D01G239800 chrUn 98.077 52 1 0 1976 2027 320620065 320620116 3.810000e-14 91.6
154 TraesCS2D01G239800 chr7A 88.889 117 11 1 1980 2096 125469278 125469164 1.040000e-29 143.0
155 TraesCS2D01G239800 chr7A 77.992 259 27 11 303 552 611705307 611705544 1.730000e-27 135.0
156 TraesCS2D01G239800 chr7A 97.436 39 0 1 4099 4137 514669822 514669859 2.310000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G239800 chr2D 256667565 256677463 9898 True 18281.000000 18281 100.000000 1 9899 1 chr2D.!!$R1 9898
1 TraesCS2D01G239800 chr2D 256673368 256673942 574 True 375.000000 375 90.444000 3522 4096 2 chr2D.!!$R3 574
2 TraesCS2D01G239800 chr2A 252086682 252096038 9356 False 3698.500000 10392 93.095000 1 9526 4 chr2A.!!$F3 9525
3 TraesCS2D01G239800 chr2B 288934434 288945216 10782 True 1266.272727 5227 93.069455 815 9899 11 chr2B.!!$R4 9084
4 TraesCS2D01G239800 chr2B 40459212 40459718 506 True 244.000000 244 76.493000 303 791 1 chr2B.!!$R2 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 821 0.034767 CCGCAGATATCCATGCCCAT 60.035 55.000 10.44 0.00 39.30 4.00 F
798 829 0.714180 ATCCATGCCCATATGCCCAT 59.286 50.000 0.00 0.00 0.00 4.00 F
2716 3409 0.740868 CTGAATGACGGACGGCATGT 60.741 55.000 14.48 4.48 44.23 3.21 F
3319 4036 0.324614 AATGACGGATGGCAGACACA 59.675 50.000 0.00 0.00 0.00 3.72 F
3320 4037 0.391661 ATGACGGATGGCAGACACAC 60.392 55.000 0.00 0.00 0.00 3.82 F
3321 4038 1.741770 GACGGATGGCAGACACACC 60.742 63.158 0.00 0.00 0.00 4.16 F
4729 6003 1.930371 GCAACAAAAACTAGGCGGCAG 60.930 52.381 13.08 9.32 0.00 4.85 F
5026 6300 1.026584 ACAACCCGTGTTTAGTTGGC 58.973 50.000 7.01 0.00 44.05 4.52 F
6142 7694 0.311477 GTTATCCCTCTCCGCTCGTC 59.689 60.000 0.00 0.00 0.00 4.20 F
6907 8459 4.927267 TGGAGAAGGTACATCCACAAAT 57.073 40.909 0.00 0.00 38.19 2.32 F
8099 9652 9.602568 TGGTTTCCAGTTTTTAGGTTTTATTTC 57.397 29.630 0.00 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2716 3409 0.458543 GGAGTCTTCGCTCGATTGCA 60.459 55.000 0.00 0.00 36.41 4.08 R
2764 3457 3.813166 GAGGCAGCAAAAACACTACACTA 59.187 43.478 0.00 0.00 0.00 2.74 R
4096 5160 3.199946 GGTGATATTCTTGGTCCAGTCCA 59.800 47.826 0.00 0.00 35.49 4.02 R
4719 5993 2.025767 ATGTCTCTGCTGCCGCCTAG 62.026 60.000 0.00 0.00 34.43 3.02 R
4729 6003 2.420022 ACGCAATTTACCATGTCTCTGC 59.580 45.455 0.00 0.00 0.00 4.26 R
4788 6062 3.054728 TGACTTCCTGTTGTGGTTTCTCA 60.055 43.478 0.00 0.00 0.00 3.27 R
5675 6962 3.263859 AAGCCTGCTAGCTGCTGCA 62.264 57.895 26.01 20.12 44.11 4.41 R
6662 8214 3.885901 ACTCAAAGGTTTTCAGCTTCTCC 59.114 43.478 0.00 0.00 39.96 3.71 R
8099 9652 5.240183 CAGCCTACAATTAACATCAGGATGG 59.760 44.000 13.40 0.00 42.91 3.51 R
8256 9809 3.464907 CCAAGTACTCCATCTGCATCTG 58.535 50.000 0.00 0.00 0.00 2.90 R
8944 10509 0.098200 TGTGACCGATCGAGCGTTAG 59.902 55.000 22.70 9.34 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 30 8.359060 CTTTATTTATGGAGAGAGAGGAAACG 57.641 38.462 0.00 0.00 0.00 3.60
26 31 4.737855 TTTATGGAGAGAGAGGAAACGG 57.262 45.455 0.00 0.00 0.00 4.44
54 70 1.098050 CTGGTGGCAGGACTATTTGC 58.902 55.000 0.00 0.00 39.56 3.68
56 72 0.392461 GGTGGCAGGACTATTTGCGA 60.392 55.000 0.00 0.00 41.17 5.10
58 74 1.331756 GTGGCAGGACTATTTGCGATG 59.668 52.381 0.00 0.00 41.17 3.84
88 104 5.220854 CCATTGAGCTTCGGTGGTAATTTAG 60.221 44.000 0.00 0.00 0.00 1.85
170 186 8.070034 AGAAAATAATTGATGATGTGGCAAGA 57.930 30.769 0.00 0.00 0.00 3.02
178 194 3.421919 TGATGTGGCAAGATGTTGAGA 57.578 42.857 6.80 0.00 35.46 3.27
186 202 4.070716 GGCAAGATGTTGAGATGGATAGG 58.929 47.826 6.80 0.00 35.46 2.57
188 204 4.746089 GCAAGATGTTGAGATGGATAGGCT 60.746 45.833 6.80 0.00 35.46 4.58
195 211 2.038164 TGAGATGGATAGGCTGCATGTC 59.962 50.000 2.28 2.28 43.62 3.06
197 213 2.440627 AGATGGATAGGCTGCATGTCAA 59.559 45.455 12.84 1.77 35.83 3.18
198 214 2.336945 TGGATAGGCTGCATGTCAAG 57.663 50.000 12.84 0.00 0.00 3.02
199 215 1.839354 TGGATAGGCTGCATGTCAAGA 59.161 47.619 12.84 0.00 0.00 3.02
200 216 2.158856 TGGATAGGCTGCATGTCAAGAG 60.159 50.000 12.84 0.00 0.00 2.85
206 223 4.789807 AGGCTGCATGTCAAGAGAAATAT 58.210 39.130 0.50 0.00 0.00 1.28
210 227 6.372185 GCTGCATGTCAAGAGAAATATGATC 58.628 40.000 0.00 0.00 0.00 2.92
211 228 6.535274 TGCATGTCAAGAGAAATATGATCG 57.465 37.500 0.00 0.00 0.00 3.69
214 231 6.565435 GCATGTCAAGAGAAATATGATCGTGG 60.565 42.308 0.00 0.00 0.00 4.94
215 232 6.220726 TGTCAAGAGAAATATGATCGTGGA 57.779 37.500 0.00 0.00 0.00 4.02
216 233 6.276091 TGTCAAGAGAAATATGATCGTGGAG 58.724 40.000 0.00 0.00 0.00 3.86
232 249 8.909923 TGATCGTGGAGATGAACTATTTAAGTA 58.090 33.333 0.00 0.00 40.26 2.24
272 303 1.414919 AGTCAAACCAGGTAACGCTGA 59.585 47.619 0.00 0.00 46.39 4.26
287 318 2.561419 ACGCTGAACTACCATACACACT 59.439 45.455 0.00 0.00 0.00 3.55
288 319 2.923655 CGCTGAACTACCATACACACTG 59.076 50.000 0.00 0.00 0.00 3.66
289 320 3.366985 CGCTGAACTACCATACACACTGA 60.367 47.826 0.00 0.00 0.00 3.41
290 321 3.927142 GCTGAACTACCATACACACTGAC 59.073 47.826 0.00 0.00 0.00 3.51
291 322 4.560716 GCTGAACTACCATACACACTGACA 60.561 45.833 0.00 0.00 0.00 3.58
293 324 4.587262 TGAACTACCATACACACTGACACT 59.413 41.667 0.00 0.00 0.00 3.55
294 325 5.771165 TGAACTACCATACACACTGACACTA 59.229 40.000 0.00 0.00 0.00 2.74
296 327 4.705507 ACTACCATACACACTGACACTAGG 59.294 45.833 0.00 0.00 0.00 3.02
297 328 2.233922 ACCATACACACTGACACTAGGC 59.766 50.000 0.00 0.00 0.00 3.93
298 329 2.418746 CCATACACACTGACACTAGGCC 60.419 54.545 0.00 0.00 0.00 5.19
299 330 2.304221 TACACACTGACACTAGGCCT 57.696 50.000 11.78 11.78 0.00 5.19
300 331 0.681733 ACACACTGACACTAGGCCTG 59.318 55.000 17.99 8.18 0.00 4.85
327 358 1.148498 GGCAGTGGGTAGGGTATGC 59.852 63.158 0.00 0.00 0.00 3.14
329 360 1.682451 GCAGTGGGTAGGGTATGCGA 61.682 60.000 0.00 0.00 0.00 5.10
336 367 0.595095 GTAGGGTATGCGACGGGTAG 59.405 60.000 0.00 0.00 0.00 3.18
344 375 1.037493 TGCGACGGGTAGAGCAATAT 58.963 50.000 0.00 0.00 35.15 1.28
349 380 4.440250 GCGACGGGTAGAGCAATATCATAT 60.440 45.833 0.00 0.00 0.00 1.78
355 386 7.014711 ACGGGTAGAGCAATATCATATCCATAG 59.985 40.741 0.00 0.00 0.00 2.23
357 388 7.158021 GGTAGAGCAATATCATATCCATAGCC 58.842 42.308 0.00 0.00 0.00 3.93
371 402 2.158957 CCATAGCCGTGTAGTCAATGGT 60.159 50.000 0.00 0.00 0.00 3.55
372 403 3.069016 CCATAGCCGTGTAGTCAATGGTA 59.931 47.826 0.00 0.00 0.00 3.25
373 404 4.262463 CCATAGCCGTGTAGTCAATGGTAT 60.262 45.833 0.00 0.00 0.00 2.73
374 405 5.047590 CCATAGCCGTGTAGTCAATGGTATA 60.048 44.000 0.00 0.00 0.00 1.47
378 409 6.354130 AGCCGTGTAGTCAATGGTATAAAAT 58.646 36.000 0.00 0.00 0.00 1.82
421 452 6.775629 ACATGGCTATGAAAATTTACCCGTAT 59.224 34.615 17.90 0.00 37.73 3.06
427 458 9.174166 GCTATGAAAATTTACCCGTATCCATAT 57.826 33.333 0.00 0.00 0.00 1.78
443 474 3.053470 TCCATATCCGACGGGTATCCATA 60.053 47.826 16.91 4.99 33.83 2.74
444 475 3.895656 CCATATCCGACGGGTATCCATAT 59.104 47.826 16.91 7.14 33.83 1.78
445 476 4.022242 CCATATCCGACGGGTATCCATATC 60.022 50.000 16.91 0.00 33.83 1.63
446 477 1.843368 TCCGACGGGTATCCATATCC 58.157 55.000 15.25 0.00 33.83 2.59
447 478 1.075861 TCCGACGGGTATCCATATCCA 59.924 52.381 15.25 0.00 32.93 3.41
448 479 2.108168 CCGACGGGTATCCATATCCAT 58.892 52.381 5.81 0.00 32.93 3.41
449 480 3.053470 TCCGACGGGTATCCATATCCATA 60.053 47.826 15.25 0.00 32.93 2.74
450 481 3.067742 CCGACGGGTATCCATATCCATAC 59.932 52.174 5.81 0.00 32.93 2.39
451 482 3.067742 CGACGGGTATCCATATCCATACC 59.932 52.174 9.79 9.79 42.76 2.73
457 488 5.694995 GGTATCCATATCCATACCCATTGG 58.305 45.833 7.87 0.00 39.06 3.16
458 489 5.431731 GGTATCCATATCCATACCCATTGGA 59.568 44.000 3.62 0.00 46.86 3.53
476 507 3.851979 TGGATATCCAACGGGTAGATCA 58.148 45.455 22.52 0.00 44.35 2.92
477 508 4.228010 TGGATATCCAACGGGTAGATCAA 58.772 43.478 22.52 0.00 44.35 2.57
478 509 4.656575 TGGATATCCAACGGGTAGATCAAA 59.343 41.667 22.52 0.00 44.35 2.69
479 510 4.995487 GGATATCCAACGGGTAGATCAAAC 59.005 45.833 17.34 0.00 35.64 2.93
480 511 3.992943 ATCCAACGGGTAGATCAAACA 57.007 42.857 0.00 0.00 34.93 2.83
481 512 3.328382 TCCAACGGGTAGATCAAACAG 57.672 47.619 0.00 0.00 34.93 3.16
482 513 2.635915 TCCAACGGGTAGATCAAACAGT 59.364 45.455 0.00 0.00 34.93 3.55
483 514 3.833650 TCCAACGGGTAGATCAAACAGTA 59.166 43.478 0.00 0.00 34.93 2.74
484 515 4.283978 TCCAACGGGTAGATCAAACAGTAA 59.716 41.667 0.00 0.00 34.93 2.24
485 516 4.390909 CCAACGGGTAGATCAAACAGTAAC 59.609 45.833 0.00 0.00 0.00 2.50
486 517 4.877378 ACGGGTAGATCAAACAGTAACA 57.123 40.909 0.00 0.00 0.00 2.41
487 518 4.563061 ACGGGTAGATCAAACAGTAACAC 58.437 43.478 0.00 0.00 0.00 3.32
488 519 4.039488 ACGGGTAGATCAAACAGTAACACA 59.961 41.667 0.00 0.00 0.00 3.72
489 520 4.387862 CGGGTAGATCAAACAGTAACACAC 59.612 45.833 0.00 0.00 0.00 3.82
490 521 5.302360 GGGTAGATCAAACAGTAACACACA 58.698 41.667 0.00 0.00 0.00 3.72
491 522 5.938125 GGGTAGATCAAACAGTAACACACAT 59.062 40.000 0.00 0.00 0.00 3.21
492 523 6.430000 GGGTAGATCAAACAGTAACACACATT 59.570 38.462 0.00 0.00 0.00 2.71
493 524 7.604927 GGGTAGATCAAACAGTAACACACATTA 59.395 37.037 0.00 0.00 0.00 1.90
494 525 9.162764 GGTAGATCAAACAGTAACACACATTAT 57.837 33.333 0.00 0.00 0.00 1.28
497 528 9.283768 AGATCAAACAGTAACACACATTATTCA 57.716 29.630 0.00 0.00 0.00 2.57
554 585 9.866655 AGAAATATTTATCTCAACCCAATAGCA 57.133 29.630 0.00 0.00 0.00 3.49
556 587 9.866655 AAATATTTATCTCAACCCAATAGCAGA 57.133 29.630 0.00 0.00 0.00 4.26
560 591 8.853077 TTTATCTCAACCCAATAGCAGATATG 57.147 34.615 0.00 0.00 0.00 1.78
561 592 6.692849 ATCTCAACCCAATAGCAGATATGA 57.307 37.500 0.00 0.00 0.00 2.15
562 593 5.858381 TCTCAACCCAATAGCAGATATGAC 58.142 41.667 0.00 0.00 0.00 3.06
563 594 5.366477 TCTCAACCCAATAGCAGATATGACA 59.634 40.000 0.00 0.00 0.00 3.58
564 595 6.000246 TCAACCCAATAGCAGATATGACAA 58.000 37.500 0.00 0.00 0.00 3.18
565 596 5.822519 TCAACCCAATAGCAGATATGACAAC 59.177 40.000 0.00 0.00 0.00 3.32
566 597 5.636903 ACCCAATAGCAGATATGACAACT 57.363 39.130 0.00 0.00 0.00 3.16
567 598 6.006275 ACCCAATAGCAGATATGACAACTT 57.994 37.500 0.00 0.00 0.00 2.66
568 599 6.426587 ACCCAATAGCAGATATGACAACTTT 58.573 36.000 0.00 0.00 0.00 2.66
569 600 7.573710 ACCCAATAGCAGATATGACAACTTTA 58.426 34.615 0.00 0.00 0.00 1.85
570 601 7.716998 ACCCAATAGCAGATATGACAACTTTAG 59.283 37.037 0.00 0.00 0.00 1.85
571 602 7.308229 CCCAATAGCAGATATGACAACTTTAGC 60.308 40.741 0.00 0.00 0.00 3.09
572 603 7.227314 CCAATAGCAGATATGACAACTTTAGCA 59.773 37.037 0.00 0.00 0.00 3.49
573 604 8.781196 CAATAGCAGATATGACAACTTTAGCAT 58.219 33.333 0.00 0.00 0.00 3.79
575 606 7.959689 AGCAGATATGACAACTTTAGCATAG 57.040 36.000 0.00 0.00 0.00 2.23
576 607 6.933521 AGCAGATATGACAACTTTAGCATAGG 59.066 38.462 0.00 0.00 0.00 2.57
577 608 6.708054 GCAGATATGACAACTTTAGCATAGGT 59.292 38.462 0.00 0.00 0.00 3.08
578 609 7.227512 GCAGATATGACAACTTTAGCATAGGTT 59.772 37.037 0.00 0.00 0.00 3.50
579 610 9.113838 CAGATATGACAACTTTAGCATAGGTTT 57.886 33.333 0.00 0.00 0.00 3.27
584 615 8.547967 TGACAACTTTAGCATAGGTTTAGAAG 57.452 34.615 0.00 0.00 0.00 2.85
585 616 7.119262 TGACAACTTTAGCATAGGTTTAGAAGC 59.881 37.037 0.00 0.00 0.00 3.86
586 617 7.168905 ACAACTTTAGCATAGGTTTAGAAGCT 58.831 34.615 0.00 0.00 42.74 3.74
587 618 7.334671 ACAACTTTAGCATAGGTTTAGAAGCTC 59.665 37.037 0.00 0.00 40.27 4.09
588 619 6.947464 ACTTTAGCATAGGTTTAGAAGCTCA 58.053 36.000 0.00 0.00 40.27 4.26
589 620 6.819146 ACTTTAGCATAGGTTTAGAAGCTCAC 59.181 38.462 0.00 0.00 40.27 3.51
590 621 4.826274 AGCATAGGTTTAGAAGCTCACA 57.174 40.909 0.00 0.00 40.27 3.58
591 622 5.165961 AGCATAGGTTTAGAAGCTCACAA 57.834 39.130 0.00 0.00 40.27 3.33
592 623 4.938226 AGCATAGGTTTAGAAGCTCACAAC 59.062 41.667 0.00 0.00 40.27 3.32
593 624 4.695455 GCATAGGTTTAGAAGCTCACAACA 59.305 41.667 0.00 0.00 40.27 3.33
594 625 5.390991 GCATAGGTTTAGAAGCTCACAACAC 60.391 44.000 0.00 0.00 40.27 3.32
595 626 4.150897 AGGTTTAGAAGCTCACAACACA 57.849 40.909 0.00 0.00 33.03 3.72
596 627 3.877508 AGGTTTAGAAGCTCACAACACAC 59.122 43.478 0.00 0.00 33.03 3.82
597 628 3.877508 GGTTTAGAAGCTCACAACACACT 59.122 43.478 0.00 0.00 0.00 3.55
598 629 4.335594 GGTTTAGAAGCTCACAACACACTT 59.664 41.667 0.00 0.00 0.00 3.16
599 630 5.502606 GTTTAGAAGCTCACAACACACTTC 58.497 41.667 0.00 0.00 37.58 3.01
600 631 3.266510 AGAAGCTCACAACACACTTCA 57.733 42.857 0.00 0.00 39.33 3.02
601 632 2.939103 AGAAGCTCACAACACACTTCAC 59.061 45.455 0.00 0.00 39.33 3.18
602 633 1.668419 AGCTCACAACACACTTCACC 58.332 50.000 0.00 0.00 0.00 4.02
603 634 1.065491 AGCTCACAACACACTTCACCA 60.065 47.619 0.00 0.00 0.00 4.17
604 635 1.742831 GCTCACAACACACTTCACCAA 59.257 47.619 0.00 0.00 0.00 3.67
605 636 2.163412 GCTCACAACACACTTCACCAAA 59.837 45.455 0.00 0.00 0.00 3.28
606 637 3.181487 GCTCACAACACACTTCACCAAAT 60.181 43.478 0.00 0.00 0.00 2.32
607 638 4.036262 GCTCACAACACACTTCACCAAATA 59.964 41.667 0.00 0.00 0.00 1.40
608 639 5.449862 GCTCACAACACACTTCACCAAATAA 60.450 40.000 0.00 0.00 0.00 1.40
609 640 5.885881 TCACAACACACTTCACCAAATAAC 58.114 37.500 0.00 0.00 0.00 1.89
610 641 5.416013 TCACAACACACTTCACCAAATAACA 59.584 36.000 0.00 0.00 0.00 2.41
611 642 6.096141 TCACAACACACTTCACCAAATAACAT 59.904 34.615 0.00 0.00 0.00 2.71
612 643 6.417635 CACAACACACTTCACCAAATAACATC 59.582 38.462 0.00 0.00 0.00 3.06
613 644 6.321181 ACAACACACTTCACCAAATAACATCT 59.679 34.615 0.00 0.00 0.00 2.90
614 645 6.317789 ACACACTTCACCAAATAACATCTG 57.682 37.500 0.00 0.00 0.00 2.90
615 646 5.241506 ACACACTTCACCAAATAACATCTGG 59.758 40.000 0.00 0.00 36.24 3.86
616 647 4.218417 ACACTTCACCAAATAACATCTGGC 59.782 41.667 0.00 0.00 33.19 4.85
617 648 4.218200 CACTTCACCAAATAACATCTGGCA 59.782 41.667 0.00 0.00 33.19 4.92
618 649 4.832266 ACTTCACCAAATAACATCTGGCAA 59.168 37.500 0.00 0.00 33.19 4.52
619 650 5.047802 ACTTCACCAAATAACATCTGGCAAG 60.048 40.000 0.00 0.00 33.19 4.01
620 651 4.406456 TCACCAAATAACATCTGGCAAGT 58.594 39.130 0.00 0.00 33.19 3.16
621 652 5.565509 TCACCAAATAACATCTGGCAAGTA 58.434 37.500 0.00 0.00 33.19 2.24
622 653 6.186957 TCACCAAATAACATCTGGCAAGTAT 58.813 36.000 0.00 0.00 33.19 2.12
623 654 6.095300 TCACCAAATAACATCTGGCAAGTATG 59.905 38.462 0.00 0.00 33.19 2.39
641 672 7.996002 CAAGTATGCAACATTTCAGTACAAAC 58.004 34.615 0.00 0.00 0.00 2.93
642 673 6.370593 AGTATGCAACATTTCAGTACAAACG 58.629 36.000 0.00 0.00 0.00 3.60
643 674 3.958704 TGCAACATTTCAGTACAAACGG 58.041 40.909 0.00 0.00 0.00 4.44
644 675 3.243234 TGCAACATTTCAGTACAAACGGG 60.243 43.478 0.00 0.00 0.00 5.28
645 676 3.243267 GCAACATTTCAGTACAAACGGGT 60.243 43.478 0.00 0.00 0.00 5.28
646 677 4.023878 GCAACATTTCAGTACAAACGGGTA 60.024 41.667 0.00 0.00 0.00 3.69
647 678 5.505985 GCAACATTTCAGTACAAACGGGTAA 60.506 40.000 0.00 0.00 0.00 2.85
648 679 5.934935 ACATTTCAGTACAAACGGGTAAG 57.065 39.130 0.00 0.00 0.00 2.34
649 680 4.758165 ACATTTCAGTACAAACGGGTAAGG 59.242 41.667 0.00 0.00 0.00 2.69
650 681 4.420522 TTTCAGTACAAACGGGTAAGGT 57.579 40.909 0.00 0.00 0.00 3.50
651 682 5.543507 TTTCAGTACAAACGGGTAAGGTA 57.456 39.130 0.00 0.00 0.00 3.08
652 683 5.743636 TTCAGTACAAACGGGTAAGGTAT 57.256 39.130 0.00 0.00 0.00 2.73
653 684 5.075858 TCAGTACAAACGGGTAAGGTATG 57.924 43.478 0.00 0.00 0.00 2.39
654 685 4.081531 TCAGTACAAACGGGTAAGGTATGG 60.082 45.833 0.00 0.00 0.00 2.74
655 686 2.793288 ACAAACGGGTAAGGTATGGG 57.207 50.000 0.00 0.00 0.00 4.00
656 687 1.987368 ACAAACGGGTAAGGTATGGGT 59.013 47.619 0.00 0.00 0.00 4.51
657 688 3.180507 ACAAACGGGTAAGGTATGGGTA 58.819 45.455 0.00 0.00 0.00 3.69
658 689 3.781965 ACAAACGGGTAAGGTATGGGTAT 59.218 43.478 0.00 0.00 0.00 2.73
659 690 4.968080 ACAAACGGGTAAGGTATGGGTATA 59.032 41.667 0.00 0.00 0.00 1.47
660 691 5.163311 ACAAACGGGTAAGGTATGGGTATAC 60.163 44.000 0.00 0.00 38.74 1.47
672 703 2.696775 TGGGTATACCATGGGTACAGG 58.303 52.381 23.33 0.00 46.80 4.00
680 711 3.396260 CCATGGGTACAGGGTTATACG 57.604 52.381 2.85 0.00 43.41 3.06
681 712 2.701951 CCATGGGTACAGGGTTATACGT 59.298 50.000 2.85 0.00 43.41 3.57
682 713 3.896888 CCATGGGTACAGGGTTATACGTA 59.103 47.826 2.85 0.00 43.41 3.57
683 714 4.529377 CCATGGGTACAGGGTTATACGTAT 59.471 45.833 13.54 13.54 43.41 3.06
684 715 5.475719 CATGGGTACAGGGTTATACGTATG 58.524 45.833 18.37 4.20 0.00 2.39
685 716 3.321682 TGGGTACAGGGTTATACGTATGC 59.678 47.826 18.37 10.36 0.00 3.14
686 717 3.306294 GGGTACAGGGTTATACGTATGCC 60.306 52.174 18.37 17.88 0.00 4.40
687 718 3.306294 GGTACAGGGTTATACGTATGCCC 60.306 52.174 28.47 28.47 39.60 5.36
691 722 3.168292 AGGGTTATACGTATGCCCTACC 58.832 50.000 33.17 23.15 46.99 3.18
692 723 2.234661 GGGTTATACGTATGCCCTACCC 59.765 54.545 28.43 23.91 37.41 3.69
693 724 2.094545 GGTTATACGTATGCCCTACCCG 60.095 54.545 18.37 0.00 0.00 5.28
694 725 2.558359 GTTATACGTATGCCCTACCCGT 59.442 50.000 18.37 0.00 35.68 5.28
695 726 0.963962 ATACGTATGCCCTACCCGTG 59.036 55.000 7.41 0.00 33.32 4.94
696 727 0.106769 TACGTATGCCCTACCCGTGA 60.107 55.000 0.00 0.00 33.32 4.35
697 728 0.971959 ACGTATGCCCTACCCGTGAA 60.972 55.000 0.00 0.00 0.00 3.18
698 729 0.391597 CGTATGCCCTACCCGTGAAT 59.608 55.000 0.00 0.00 0.00 2.57
699 730 1.202604 CGTATGCCCTACCCGTGAATT 60.203 52.381 0.00 0.00 0.00 2.17
700 731 2.036217 CGTATGCCCTACCCGTGAATTA 59.964 50.000 0.00 0.00 0.00 1.40
701 732 3.493002 CGTATGCCCTACCCGTGAATTAA 60.493 47.826 0.00 0.00 0.00 1.40
702 733 2.406596 TGCCCTACCCGTGAATTAAC 57.593 50.000 0.00 0.00 0.00 2.01
703 734 1.629353 TGCCCTACCCGTGAATTAACA 59.371 47.619 0.00 0.00 0.00 2.41
704 735 2.240160 TGCCCTACCCGTGAATTAACAT 59.760 45.455 0.00 0.00 0.00 2.71
705 736 2.616842 GCCCTACCCGTGAATTAACATG 59.383 50.000 0.00 0.00 0.00 3.21
706 737 2.616842 CCCTACCCGTGAATTAACATGC 59.383 50.000 0.00 0.00 0.00 4.06
707 738 3.275143 CCTACCCGTGAATTAACATGCA 58.725 45.455 0.00 0.00 0.00 3.96
708 739 3.882888 CCTACCCGTGAATTAACATGCAT 59.117 43.478 0.00 0.00 0.00 3.96
709 740 3.781079 ACCCGTGAATTAACATGCATG 57.219 42.857 25.09 25.09 0.00 4.06
710 741 2.426738 ACCCGTGAATTAACATGCATGG 59.573 45.455 29.41 12.50 43.12 3.66
711 742 2.426738 CCCGTGAATTAACATGCATGGT 59.573 45.455 29.41 26.41 42.19 3.55
712 743 3.629855 CCCGTGAATTAACATGCATGGTA 59.370 43.478 29.41 25.24 42.19 3.25
713 744 4.278170 CCCGTGAATTAACATGCATGGTAT 59.722 41.667 29.41 14.36 42.19 2.73
714 745 5.214417 CCGTGAATTAACATGCATGGTATG 58.786 41.667 29.41 13.43 39.62 2.39
715 746 5.008514 CCGTGAATTAACATGCATGGTATGA 59.991 40.000 29.41 14.66 39.62 2.15
716 747 6.138088 CGTGAATTAACATGCATGGTATGAG 58.862 40.000 29.41 12.31 28.67 2.90
717 748 6.238456 CGTGAATTAACATGCATGGTATGAGT 60.238 38.462 29.41 13.50 28.67 3.41
718 749 7.042119 CGTGAATTAACATGCATGGTATGAGTA 60.042 37.037 29.41 13.18 28.67 2.59
719 750 8.786898 GTGAATTAACATGCATGGTATGAGTAT 58.213 33.333 29.41 14.86 28.67 2.12
720 751 9.353431 TGAATTAACATGCATGGTATGAGTATT 57.647 29.630 29.41 21.63 28.67 1.89
724 755 7.928307 AACATGCATGGTATGAGTATTATCC 57.072 36.000 29.41 0.00 0.00 2.59
725 756 7.019656 ACATGCATGGTATGAGTATTATCCA 57.980 36.000 29.41 0.00 0.00 3.41
726 757 7.636579 ACATGCATGGTATGAGTATTATCCAT 58.363 34.615 29.41 0.00 36.30 3.41
728 759 6.417258 TGCATGGTATGAGTATTATCCATGG 58.583 40.000 19.06 4.97 46.86 3.66
729 760 6.215227 TGCATGGTATGAGTATTATCCATGGA 59.785 38.462 18.88 18.88 46.86 3.41
730 761 7.092309 TGCATGGTATGAGTATTATCCATGGAT 60.092 37.037 29.66 29.66 46.86 3.41
731 762 8.432013 GCATGGTATGAGTATTATCCATGGATA 58.568 37.037 27.46 27.46 46.86 2.59
743 774 7.759489 TTATCCATGGATATTAAACTGTGCC 57.241 36.000 30.63 0.00 37.02 5.01
744 775 5.387113 TCCATGGATATTAAACTGTGCCT 57.613 39.130 11.44 0.00 0.00 4.75
745 776 6.508030 TCCATGGATATTAAACTGTGCCTA 57.492 37.500 11.44 0.00 0.00 3.93
746 777 7.090319 TCCATGGATATTAAACTGTGCCTAT 57.910 36.000 11.44 0.00 0.00 2.57
747 778 8.213489 TCCATGGATATTAAACTGTGCCTATA 57.787 34.615 11.44 0.00 0.00 1.31
748 779 8.835734 TCCATGGATATTAAACTGTGCCTATAT 58.164 33.333 11.44 0.00 0.00 0.86
749 780 9.113838 CCATGGATATTAAACTGTGCCTATATC 57.886 37.037 5.56 0.00 0.00 1.63
750 781 9.113838 CATGGATATTAAACTGTGCCTATATCC 57.886 37.037 16.57 16.57 41.92 2.59
751 782 8.449423 TGGATATTAAACTGTGCCTATATCCT 57.551 34.615 20.32 0.00 42.01 3.24
752 783 9.555411 TGGATATTAAACTGTGCCTATATCCTA 57.445 33.333 20.32 11.63 42.01 2.94
753 784 9.819267 GGATATTAAACTGTGCCTATATCCTAC 57.181 37.037 16.34 0.00 39.97 3.18
754 785 9.819267 GATATTAAACTGTGCCTATATCCTACC 57.181 37.037 0.00 0.00 0.00 3.18
755 786 4.976540 AAACTGTGCCTATATCCTACCC 57.023 45.455 0.00 0.00 0.00 3.69
756 787 3.630625 ACTGTGCCTATATCCTACCCA 57.369 47.619 0.00 0.00 0.00 4.51
757 788 4.147667 ACTGTGCCTATATCCTACCCAT 57.852 45.455 0.00 0.00 0.00 4.00
758 789 3.840666 ACTGTGCCTATATCCTACCCATG 59.159 47.826 0.00 0.00 0.00 3.66
759 790 2.571653 TGTGCCTATATCCTACCCATGC 59.428 50.000 0.00 0.00 0.00 4.06
760 791 1.831106 TGCCTATATCCTACCCATGCG 59.169 52.381 0.00 0.00 0.00 4.73
761 792 1.139058 GCCTATATCCTACCCATGCGG 59.861 57.143 0.00 0.00 37.81 5.69
787 818 2.988010 TATCCGCAGATATCCATGCC 57.012 50.000 10.44 0.00 39.30 4.40
788 819 0.254178 ATCCGCAGATATCCATGCCC 59.746 55.000 10.44 0.00 39.30 5.36
789 820 1.126948 TCCGCAGATATCCATGCCCA 61.127 55.000 10.44 0.00 39.30 5.36
790 821 0.034767 CCGCAGATATCCATGCCCAT 60.035 55.000 10.44 0.00 39.30 4.00
791 822 1.210234 CCGCAGATATCCATGCCCATA 59.790 52.381 10.44 0.00 39.30 2.74
792 823 2.158711 CCGCAGATATCCATGCCCATAT 60.159 50.000 10.44 0.00 39.30 1.78
793 824 2.876550 CGCAGATATCCATGCCCATATG 59.123 50.000 10.44 0.00 39.30 1.78
794 825 2.621998 GCAGATATCCATGCCCATATGC 59.378 50.000 5.80 0.00 36.41 3.14
795 826 3.220110 CAGATATCCATGCCCATATGCC 58.780 50.000 0.00 0.00 0.00 4.40
796 827 2.176364 AGATATCCATGCCCATATGCCC 59.824 50.000 0.00 0.00 0.00 5.36
797 828 1.380820 TATCCATGCCCATATGCCCA 58.619 50.000 0.00 0.00 0.00 5.36
798 829 0.714180 ATCCATGCCCATATGCCCAT 59.286 50.000 0.00 0.00 0.00 4.00
799 830 1.380820 TCCATGCCCATATGCCCATA 58.619 50.000 0.00 0.00 0.00 2.74
800 831 1.285667 TCCATGCCCATATGCCCATAG 59.714 52.381 0.00 0.00 0.00 2.23
801 832 1.687054 CCATGCCCATATGCCCATAGG 60.687 57.143 0.00 3.42 0.00 2.57
802 833 1.006281 CATGCCCATATGCCCATAGGT 59.994 52.381 0.00 0.00 34.57 3.08
803 834 2.052249 TGCCCATATGCCCATAGGTA 57.948 50.000 0.00 0.00 34.57 3.08
804 835 2.353349 TGCCCATATGCCCATAGGTAA 58.647 47.619 0.00 0.00 34.57 2.85
805 836 2.719157 TGCCCATATGCCCATAGGTAAA 59.281 45.455 0.00 0.00 34.57 2.01
806 837 3.141083 TGCCCATATGCCCATAGGTAAAA 59.859 43.478 0.00 0.00 34.57 1.52
807 838 4.202770 TGCCCATATGCCCATAGGTAAAAT 60.203 41.667 0.00 0.00 34.57 1.82
808 839 4.402474 GCCCATATGCCCATAGGTAAAATC 59.598 45.833 0.00 0.00 34.57 2.17
809 840 4.640201 CCCATATGCCCATAGGTAAAATCG 59.360 45.833 0.00 0.00 34.57 3.34
810 841 4.096382 CCATATGCCCATAGGTAAAATCGC 59.904 45.833 0.00 0.00 34.57 4.58
811 842 1.975660 TGCCCATAGGTAAAATCGCC 58.024 50.000 0.00 0.00 34.57 5.54
1180 1440 1.975407 GGTGGAGGAGGTCGTCGAA 60.975 63.158 0.00 0.00 0.00 3.71
1522 1782 1.269569 GGCTTTGCCTTTGTACGCTTT 60.270 47.619 0.73 0.00 46.69 3.51
1607 1867 3.963374 AGCTACTGCATCCACTAGATTCA 59.037 43.478 0.00 0.00 42.74 2.57
1681 1943 3.133362 ACACTGAACGAACTGGTCCTAAA 59.867 43.478 0.00 0.00 0.00 1.85
1761 2026 5.338365 AGAATTTGCTACGTACTAGGAACG 58.662 41.667 15.77 15.77 45.64 3.95
1831 2099 1.472878 GTGCTTTACAGGGCTTAAGGC 59.527 52.381 20.30 20.30 40.90 4.35
2074 2342 7.012894 TGTCAAAAACGCTCTTATATTATGGGG 59.987 37.037 0.00 0.00 0.00 4.96
2313 2582 3.628257 CCCCTGTCCATGGCTAAATCTTT 60.628 47.826 6.96 0.00 0.00 2.52
2413 2682 5.518487 GCCATTATCAACACATTTTAACCGG 59.482 40.000 0.00 0.00 0.00 5.28
2415 2684 5.707242 TTATCAACACATTTTAACCGGCA 57.293 34.783 0.00 0.00 0.00 5.69
2527 3220 7.147479 GCCACCCCAACTCTATCACATATATAT 60.147 40.741 0.00 0.00 0.00 0.86
2716 3409 0.740868 CTGAATGACGGACGGCATGT 60.741 55.000 14.48 4.48 44.23 3.21
2764 3457 2.101917 GCATTGCATTAAGAGCACCCAT 59.898 45.455 3.15 0.00 42.54 4.00
2947 3640 1.689233 TTCCAGGGAGCGGCTGTAT 60.689 57.895 7.50 0.00 0.00 2.29
2948 3641 0.397957 TTCCAGGGAGCGGCTGTATA 60.398 55.000 7.50 0.00 0.00 1.47
3226 3943 5.213891 ACTAAGGGGTTTTCTGCAAATTG 57.786 39.130 0.00 0.00 0.00 2.32
3276 3993 2.595238 AGGAACTTACCTCACAGTCGT 58.405 47.619 0.00 0.00 34.98 4.34
3278 3995 4.147321 AGGAACTTACCTCACAGTCGTTA 58.853 43.478 0.00 0.00 34.98 3.18
3279 3996 4.217983 AGGAACTTACCTCACAGTCGTTAG 59.782 45.833 0.00 0.00 34.98 2.34
3280 3997 4.217118 GGAACTTACCTCACAGTCGTTAGA 59.783 45.833 0.00 0.00 0.00 2.10
3281 3998 5.105837 GGAACTTACCTCACAGTCGTTAGAT 60.106 44.000 0.00 0.00 0.00 1.98
3282 3999 5.312120 ACTTACCTCACAGTCGTTAGATG 57.688 43.478 0.00 0.00 0.00 2.90
3283 4000 2.656560 ACCTCACAGTCGTTAGATGC 57.343 50.000 0.00 0.00 0.00 3.91
3284 4001 1.893137 ACCTCACAGTCGTTAGATGCA 59.107 47.619 0.00 0.00 0.00 3.96
3285 4002 2.094494 ACCTCACAGTCGTTAGATGCAG 60.094 50.000 0.00 0.00 0.00 4.41
3286 4003 2.164422 CCTCACAGTCGTTAGATGCAGA 59.836 50.000 0.00 0.00 0.00 4.26
3287 4004 3.181482 CCTCACAGTCGTTAGATGCAGAT 60.181 47.826 0.00 0.00 0.00 2.90
3288 4005 4.033990 TCACAGTCGTTAGATGCAGATC 57.966 45.455 0.00 0.00 0.00 2.75
3289 4006 3.696548 TCACAGTCGTTAGATGCAGATCT 59.303 43.478 0.00 0.00 42.03 2.75
3290 4007 4.881850 TCACAGTCGTTAGATGCAGATCTA 59.118 41.667 0.00 0.00 39.76 1.98
3291 4008 5.357032 TCACAGTCGTTAGATGCAGATCTAA 59.643 40.000 5.80 5.80 45.23 2.10
3299 4016 6.983906 TTAGATGCAGATCTAATGGTCAGA 57.016 37.500 5.80 0.00 43.42 3.27
3300 4017 5.883685 AGATGCAGATCTAATGGTCAGAA 57.116 39.130 0.00 0.00 37.15 3.02
3301 4018 6.244552 AGATGCAGATCTAATGGTCAGAAA 57.755 37.500 0.00 0.00 37.15 2.52
3302 4019 6.839454 AGATGCAGATCTAATGGTCAGAAAT 58.161 36.000 0.00 0.00 37.15 2.17
3303 4020 6.711194 AGATGCAGATCTAATGGTCAGAAATG 59.289 38.462 0.00 0.00 37.15 2.32
3304 4021 5.993055 TGCAGATCTAATGGTCAGAAATGA 58.007 37.500 0.00 0.00 0.00 2.57
3305 4022 5.819379 TGCAGATCTAATGGTCAGAAATGAC 59.181 40.000 0.00 0.00 38.04 3.06
3306 4023 5.050499 GCAGATCTAATGGTCAGAAATGACG 60.050 44.000 0.00 0.00 39.57 4.35
3307 4024 5.464722 CAGATCTAATGGTCAGAAATGACGG 59.535 44.000 0.00 0.00 39.57 4.79
3308 4025 5.363868 AGATCTAATGGTCAGAAATGACGGA 59.636 40.000 0.00 0.00 39.57 4.69
3309 4026 5.614324 TCTAATGGTCAGAAATGACGGAT 57.386 39.130 2.56 0.00 39.57 4.18
3310 4027 5.359756 TCTAATGGTCAGAAATGACGGATG 58.640 41.667 2.56 0.00 39.57 3.51
3311 4028 2.401583 TGGTCAGAAATGACGGATGG 57.598 50.000 2.56 0.00 39.57 3.51
3312 4029 1.017387 GGTCAGAAATGACGGATGGC 58.983 55.000 2.56 0.00 39.57 4.40
3313 4030 1.678728 GGTCAGAAATGACGGATGGCA 60.679 52.381 0.00 0.00 39.57 4.92
3314 4031 1.667724 GTCAGAAATGACGGATGGCAG 59.332 52.381 0.00 0.00 0.00 4.85
3315 4032 1.554617 TCAGAAATGACGGATGGCAGA 59.445 47.619 0.00 0.00 0.00 4.26
3316 4033 1.667724 CAGAAATGACGGATGGCAGAC 59.332 52.381 0.00 0.00 0.00 3.51
3317 4034 1.278985 AGAAATGACGGATGGCAGACA 59.721 47.619 0.00 0.00 0.00 3.41
3318 4035 1.398390 GAAATGACGGATGGCAGACAC 59.602 52.381 0.00 0.00 0.00 3.67
3319 4036 0.324614 AATGACGGATGGCAGACACA 59.675 50.000 0.00 0.00 0.00 3.72
3320 4037 0.391661 ATGACGGATGGCAGACACAC 60.392 55.000 0.00 0.00 0.00 3.82
3321 4038 1.741770 GACGGATGGCAGACACACC 60.742 63.158 0.00 0.00 0.00 4.16
3322 4039 2.347114 CGGATGGCAGACACACCA 59.653 61.111 0.00 0.00 41.06 4.17
3327 4044 2.519771 ATGGCAGACACACCATCATT 57.480 45.000 0.00 0.00 43.26 2.57
3328 4045 3.650281 ATGGCAGACACACCATCATTA 57.350 42.857 0.00 0.00 43.26 1.90
3329 4046 2.710377 TGGCAGACACACCATCATTAC 58.290 47.619 0.00 0.00 0.00 1.89
3330 4047 2.017049 GGCAGACACACCATCATTACC 58.983 52.381 0.00 0.00 0.00 2.85
3331 4048 2.617788 GGCAGACACACCATCATTACCA 60.618 50.000 0.00 0.00 0.00 3.25
3332 4049 3.081061 GCAGACACACCATCATTACCAA 58.919 45.455 0.00 0.00 0.00 3.67
3333 4050 3.119849 GCAGACACACCATCATTACCAAC 60.120 47.826 0.00 0.00 0.00 3.77
3334 4051 4.326826 CAGACACACCATCATTACCAACT 58.673 43.478 0.00 0.00 0.00 3.16
3335 4052 4.154737 CAGACACACCATCATTACCAACTG 59.845 45.833 0.00 0.00 0.00 3.16
3336 4053 4.041567 AGACACACCATCATTACCAACTGA 59.958 41.667 0.00 0.00 0.00 3.41
3337 4054 4.326826 ACACACCATCATTACCAACTGAG 58.673 43.478 0.00 0.00 0.00 3.35
3338 4055 4.202461 ACACACCATCATTACCAACTGAGT 60.202 41.667 0.00 0.00 0.00 3.41
3339 4056 4.393062 CACACCATCATTACCAACTGAGTC 59.607 45.833 0.00 0.00 0.00 3.36
3340 4057 4.287067 ACACCATCATTACCAACTGAGTCT 59.713 41.667 0.00 0.00 0.00 3.24
3341 4058 5.221925 ACACCATCATTACCAACTGAGTCTT 60.222 40.000 0.00 0.00 0.00 3.01
3342 4059 5.707298 CACCATCATTACCAACTGAGTCTTT 59.293 40.000 0.00 0.00 0.00 2.52
3343 4060 6.207417 CACCATCATTACCAACTGAGTCTTTT 59.793 38.462 0.00 0.00 0.00 2.27
3344 4061 7.390440 CACCATCATTACCAACTGAGTCTTTTA 59.610 37.037 0.00 0.00 0.00 1.52
3345 4062 8.109634 ACCATCATTACCAACTGAGTCTTTTAT 58.890 33.333 0.00 0.00 0.00 1.40
3346 4063 9.613428 CCATCATTACCAACTGAGTCTTTTATA 57.387 33.333 0.00 0.00 0.00 0.98
3348 4065 9.838339 ATCATTACCAACTGAGTCTTTTATAGG 57.162 33.333 0.00 0.00 0.00 2.57
3349 4066 9.042450 TCATTACCAACTGAGTCTTTTATAGGA 57.958 33.333 0.00 0.00 0.00 2.94
3350 4067 9.319143 CATTACCAACTGAGTCTTTTATAGGAG 57.681 37.037 0.00 0.00 0.00 3.69
3351 4068 6.936968 ACCAACTGAGTCTTTTATAGGAGT 57.063 37.500 0.00 0.00 0.00 3.85
3352 4069 9.537852 TTACCAACTGAGTCTTTTATAGGAGTA 57.462 33.333 0.00 0.00 0.00 2.59
3353 4070 8.068892 ACCAACTGAGTCTTTTATAGGAGTAG 57.931 38.462 0.00 0.00 0.00 2.57
3354 4071 7.894364 ACCAACTGAGTCTTTTATAGGAGTAGA 59.106 37.037 0.00 0.00 0.00 2.59
3355 4072 8.410141 CCAACTGAGTCTTTTATAGGAGTAGAG 58.590 40.741 0.00 0.00 0.00 2.43
3374 4091 3.055819 AGAGAAACTTCAGCGGCAATCTA 60.056 43.478 1.45 0.00 0.00 1.98
3375 4092 3.873952 GAGAAACTTCAGCGGCAATCTAT 59.126 43.478 1.45 0.00 0.00 1.98
3401 4118 4.342862 AATGTTATAGAGGCGATGCTGT 57.657 40.909 0.00 0.00 0.00 4.40
3505 4266 8.448008 CCAACTGGGGGCACAATATATATATAT 58.552 37.037 9.12 9.12 0.00 0.86
4096 5160 3.004315 ACTTTTCCGCAAAACGTCATGAT 59.996 39.130 0.00 0.00 41.42 2.45
4253 5327 7.192852 AGAGCAGGATTGTAATATATGAGGG 57.807 40.000 0.00 0.00 0.00 4.30
4290 5364 4.963318 TCTCATAACCTATGCCTTCCTG 57.037 45.455 0.00 0.00 36.14 3.86
4447 5521 2.416431 GCATCCATCCTTGAACTGCAAC 60.416 50.000 0.00 0.00 31.96 4.17
4482 5557 5.234329 GTCTTTGTTGTCGAGAAGATGTCAA 59.766 40.000 0.00 0.00 31.52 3.18
4653 5732 2.337583 TGCACGATCTACAGAAACTGC 58.662 47.619 0.00 0.00 34.37 4.40
4719 5993 7.702348 GTCCAATATATCAGGAGCAACAAAAAC 59.298 37.037 7.02 0.00 30.78 2.43
4729 6003 1.930371 GCAACAAAAACTAGGCGGCAG 60.930 52.381 13.08 9.32 0.00 4.85
4788 6062 7.611855 CACAAGGAAAAGTATTGGTAGAGGAAT 59.388 37.037 0.00 0.00 0.00 3.01
4951 6225 9.906660 ACTTGTTTAATAACATGTGTTGTATGG 57.093 29.630 0.00 0.00 45.51 2.74
5026 6300 1.026584 ACAACCCGTGTTTAGTTGGC 58.973 50.000 7.01 0.00 44.05 4.52
5097 6371 2.179424 GAGGGGATGGAGGGAGTACTTA 59.821 54.545 0.00 0.00 0.00 2.24
5498 6785 7.068839 TCCAAAATTTTAGTGTTAAGTGGAGCA 59.931 33.333 2.44 0.00 0.00 4.26
5675 6962 5.323371 GAGAAGTACTGCATTCTCAGACT 57.677 43.478 18.57 0.00 46.95 3.24
5719 7006 7.287927 TCGTAATTCAGGAGAATCAGGAAGTAT 59.712 37.037 0.00 0.00 43.52 2.12
5857 7144 5.147330 TCACATACAGACCGAAATGAGTT 57.853 39.130 0.00 0.00 0.00 3.01
5861 7148 5.575606 ACATACAGACCGAAATGAGTTAACG 59.424 40.000 0.00 0.00 0.00 3.18
5948 7236 9.416284 TGTGAACAGAGGAGTATTATATACACA 57.584 33.333 0.00 0.00 0.00 3.72
6140 7692 1.536331 GTAGTTATCCCTCTCCGCTCG 59.464 57.143 0.00 0.00 0.00 5.03
6142 7694 0.311477 GTTATCCCTCTCCGCTCGTC 59.689 60.000 0.00 0.00 0.00 4.20
6252 7804 8.007405 TCTGTTAGATTATGTACTGCTGCTAA 57.993 34.615 0.00 0.00 0.00 3.09
6472 8024 6.627087 AGGGCTGCACATATATATAACACT 57.373 37.500 4.01 0.00 0.00 3.55
6573 8125 5.355596 ACATTTGCTTCGATTGGTCAAAAA 58.644 33.333 0.00 0.00 31.55 1.94
6907 8459 4.927267 TGGAGAAGGTACATCCACAAAT 57.073 40.909 0.00 0.00 38.19 2.32
8099 9652 9.602568 TGGTTTCCAGTTTTTAGGTTTTATTTC 57.397 29.630 0.00 0.00 0.00 2.17
8353 9906 2.877097 TATTGCCTTCAAGTCCTGCA 57.123 45.000 0.00 0.00 35.37 4.41
8943 10508 0.824109 TTTCTGATCGGCCGACAGAT 59.176 50.000 37.59 24.70 39.78 2.90
8944 10509 0.385751 TTCTGATCGGCCGACAGATC 59.614 55.000 37.59 29.60 42.52 2.75
8945 10510 0.466372 TCTGATCGGCCGACAGATCT 60.466 55.000 35.70 22.19 42.62 2.75
8946 10511 1.202770 TCTGATCGGCCGACAGATCTA 60.203 52.381 35.70 23.75 42.62 1.98
8947 10512 1.609072 CTGATCGGCCGACAGATCTAA 59.391 52.381 34.79 14.60 42.62 2.10
8948 10513 1.337071 TGATCGGCCGACAGATCTAAC 59.663 52.381 33.75 13.13 42.62 2.34
8949 10514 0.311165 ATCGGCCGACAGATCTAACG 59.689 55.000 33.75 11.97 0.00 3.18
8950 10515 1.944676 CGGCCGACAGATCTAACGC 60.945 63.158 24.07 5.29 0.00 4.84
8951 10516 1.437986 GGCCGACAGATCTAACGCT 59.562 57.895 13.06 0.00 0.00 5.07
8952 10517 0.595310 GGCCGACAGATCTAACGCTC 60.595 60.000 13.06 8.18 0.00 5.03
8953 10518 0.930742 GCCGACAGATCTAACGCTCG 60.931 60.000 13.06 6.95 0.00 5.03
8954 10519 0.656259 CCGACAGATCTAACGCTCGA 59.344 55.000 13.06 0.00 0.00 4.04
8955 10520 1.264557 CCGACAGATCTAACGCTCGAT 59.735 52.381 13.06 0.00 0.00 3.59
8956 10521 2.566036 CGACAGATCTAACGCTCGATC 58.434 52.381 0.00 0.00 37.02 3.69
8957 10522 2.566036 GACAGATCTAACGCTCGATCG 58.434 52.381 9.36 9.36 40.65 3.69
8958 10523 1.264557 ACAGATCTAACGCTCGATCGG 59.735 52.381 16.41 7.26 40.65 4.18
9073 10655 3.470567 GCAAGCTCGTCACGTCGG 61.471 66.667 0.00 0.00 0.00 4.79
9124 10706 1.755008 CTCTCGTCCTCCCCCTGTC 60.755 68.421 0.00 0.00 0.00 3.51
9125 10707 2.218115 CTCTCGTCCTCCCCCTGTCT 62.218 65.000 0.00 0.00 0.00 3.41
9126 10708 0.917821 TCTCGTCCTCCCCCTGTCTA 60.918 60.000 0.00 0.00 0.00 2.59
9130 10712 1.477195 CGTCCTCCCCCTGTCTACTAG 60.477 61.905 0.00 0.00 0.00 2.57
9216 10798 4.527816 AGCATTGGCCTTTTTACATTCTCA 59.472 37.500 3.32 0.00 42.56 3.27
9281 10870 4.927267 ACACCAATAGAGAACCAATGGA 57.073 40.909 6.16 0.00 0.00 3.41
9440 12174 2.797786 TCCAAACCGAACCATTTAGGG 58.202 47.619 0.00 0.00 43.89 3.53
9464 12198 5.121811 CCCTTCTTATCCTTGATCACACTG 58.878 45.833 0.00 0.00 0.00 3.66
9490 12224 0.893727 TTTTCTTCTCGGGCTTGCCC 60.894 55.000 20.15 20.15 0.00 5.36
9579 12313 5.390145 GCGTGTTTGTTATGTCCGTCTATTT 60.390 40.000 0.00 0.00 0.00 1.40
9581 12315 6.518395 CGTGTTTGTTATGTCCGTCTATTTTG 59.482 38.462 0.00 0.00 0.00 2.44
9652 12388 7.441157 TCACTAGAAGGACAACAGTACAAATTG 59.559 37.037 0.00 0.00 0.00 2.32
9653 12389 5.438761 AGAAGGACAACAGTACAAATTGC 57.561 39.130 0.00 0.00 0.00 3.56
9654 12390 4.887071 AGAAGGACAACAGTACAAATTGCA 59.113 37.500 0.00 0.00 0.00 4.08
9676 12412 6.143496 GCAAAGTTGAAGAGGTAGTTAAAGC 58.857 40.000 0.00 0.00 0.00 3.51
9677 12413 6.238648 GCAAAGTTGAAGAGGTAGTTAAAGCA 60.239 38.462 0.00 0.00 0.00 3.91
9686 12422 9.162764 GAAGAGGTAGTTAAAGCATCATACAAA 57.837 33.333 0.00 0.00 0.00 2.83
9689 12425 8.807948 AGGTAGTTAAAGCATCATACAAACAT 57.192 30.769 0.00 0.00 0.00 2.71
9704 12440 2.988493 CAAACATGTGCACACTAATGGC 59.012 45.455 24.37 0.00 0.00 4.40
9716 12452 3.243569 ACACTAATGGCGAGAGTATGAGC 60.244 47.826 0.00 0.00 0.00 4.26
9717 12453 2.959030 ACTAATGGCGAGAGTATGAGCA 59.041 45.455 0.00 0.00 0.00 4.26
9718 12454 3.576118 ACTAATGGCGAGAGTATGAGCAT 59.424 43.478 0.00 0.00 0.00 3.79
9742 12478 0.317854 GCAAACAAGGTCGCCTCAAC 60.318 55.000 0.00 0.00 30.89 3.18
9775 12511 2.202810 GCCTACGTCTCTGGCAGC 60.203 66.667 10.34 0.00 45.46 5.25
9780 12516 0.961857 TACGTCTCTGGCAGCGGTTA 60.962 55.000 10.34 0.00 0.00 2.85
9804 12540 2.759795 GCCCCTTGCTCCAACTCT 59.240 61.111 0.00 0.00 36.87 3.24
9806 12542 1.246737 GCCCCTTGCTCCAACTCTTG 61.247 60.000 0.00 0.00 36.87 3.02
9827 12563 1.394917 CCTAGTTGCGCAAGTCATCAC 59.605 52.381 32.43 15.76 41.68 3.06
9861 12597 2.188524 CAGACGTGAGATCGATGGTTG 58.811 52.381 0.54 0.00 34.70 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 30 3.608432 GCCACCAGCATCCTTTCC 58.392 61.111 0.00 0.00 42.97 3.13
58 74 2.409870 CGAAGCTCAATGGTGCCCC 61.410 63.158 0.00 0.00 34.10 5.80
76 92 5.318630 TGTTTCCAGTCCTAAATTACCACC 58.681 41.667 0.00 0.00 0.00 4.61
88 104 0.670854 GGTCGCTCTGTTTCCAGTCC 60.671 60.000 0.00 0.00 39.82 3.85
146 162 8.761497 CATCTTGCCACATCATCAATTATTTTC 58.239 33.333 0.00 0.00 0.00 2.29
161 177 2.040145 TCCATCTCAACATCTTGCCACA 59.960 45.455 0.00 0.00 0.00 4.17
170 186 2.440627 TGCAGCCTATCCATCTCAACAT 59.559 45.455 0.00 0.00 0.00 2.71
178 194 2.440627 TCTTGACATGCAGCCTATCCAT 59.559 45.455 0.00 0.00 0.00 3.41
186 202 5.746307 TCATATTTCTCTTGACATGCAGC 57.254 39.130 0.00 0.00 0.00 5.25
188 204 6.018507 CACGATCATATTTCTCTTGACATGCA 60.019 38.462 0.00 0.00 0.00 3.96
195 211 7.150640 TCATCTCCACGATCATATTTCTCTTG 58.849 38.462 0.00 0.00 0.00 3.02
197 213 6.907853 TCATCTCCACGATCATATTTCTCT 57.092 37.500 0.00 0.00 0.00 3.10
198 214 7.151308 AGTTCATCTCCACGATCATATTTCTC 58.849 38.462 0.00 0.00 0.00 2.87
199 215 7.060383 AGTTCATCTCCACGATCATATTTCT 57.940 36.000 0.00 0.00 0.00 2.52
200 216 8.994429 ATAGTTCATCTCCACGATCATATTTC 57.006 34.615 0.00 0.00 0.00 2.17
206 223 7.782049 ACTTAAATAGTTCATCTCCACGATCA 58.218 34.615 0.00 0.00 31.29 2.92
229 246 5.900437 TCGGTCCCCAGAATCTATAATACT 58.100 41.667 0.00 0.00 0.00 2.12
232 249 4.753186 ACTCGGTCCCCAGAATCTATAAT 58.247 43.478 0.00 0.00 0.00 1.28
238 255 0.902531 TTGACTCGGTCCCCAGAATC 59.097 55.000 2.23 0.00 0.00 2.52
240 257 0.395312 GTTTGACTCGGTCCCCAGAA 59.605 55.000 2.23 0.00 0.00 3.02
241 258 1.477685 GGTTTGACTCGGTCCCCAGA 61.478 60.000 2.23 0.00 0.00 3.86
242 259 1.003718 GGTTTGACTCGGTCCCCAG 60.004 63.158 2.23 0.00 0.00 4.45
244 261 1.003718 CTGGTTTGACTCGGTCCCC 60.004 63.158 2.23 1.31 0.00 4.81
245 262 1.003718 CCTGGTTTGACTCGGTCCC 60.004 63.158 2.23 0.00 0.00 4.46
272 303 5.185249 CCTAGTGTCAGTGTGTATGGTAGTT 59.815 44.000 0.00 0.00 0.00 2.24
287 318 1.195115 CCTTAGCAGGCCTAGTGTCA 58.805 55.000 3.98 0.00 31.53 3.58
288 319 1.486211 TCCTTAGCAGGCCTAGTGTC 58.514 55.000 3.98 0.00 40.58 3.67
289 320 1.765314 CATCCTTAGCAGGCCTAGTGT 59.235 52.381 3.98 0.00 40.58 3.55
290 321 1.071385 CCATCCTTAGCAGGCCTAGTG 59.929 57.143 3.98 0.00 40.58 2.74
291 322 1.428869 CCATCCTTAGCAGGCCTAGT 58.571 55.000 3.98 0.00 40.58 2.57
293 324 0.694105 TGCCATCCTTAGCAGGCCTA 60.694 55.000 3.98 0.00 46.45 3.93
294 325 2.002977 TGCCATCCTTAGCAGGCCT 61.003 57.895 0.00 0.00 46.45 5.19
299 330 1.207488 ACCCACTGCCATCCTTAGCA 61.207 55.000 0.00 0.00 37.46 3.49
300 331 0.837272 TACCCACTGCCATCCTTAGC 59.163 55.000 0.00 0.00 0.00 3.09
313 344 1.066918 CGTCGCATACCCTACCCAC 59.933 63.158 0.00 0.00 0.00 4.61
327 358 3.577649 ATGATATTGCTCTACCCGTCG 57.422 47.619 0.00 0.00 0.00 5.12
329 360 5.023452 TGGATATGATATTGCTCTACCCGT 58.977 41.667 0.00 0.00 0.00 5.28
336 367 5.464722 CACGGCTATGGATATGATATTGCTC 59.535 44.000 0.00 0.00 0.00 4.26
344 375 4.403734 TGACTACACGGCTATGGATATGA 58.596 43.478 0.00 0.00 0.00 2.15
349 380 2.102420 CCATTGACTACACGGCTATGGA 59.898 50.000 2.66 0.00 33.61 3.41
355 386 6.613755 ATTTTATACCATTGACTACACGGC 57.386 37.500 0.00 0.00 0.00 5.68
374 405 8.902806 CATGTGTATGGGTATGTGTAGAATTTT 58.097 33.333 0.00 0.00 0.00 1.82
392 423 7.255451 CGGGTAAATTTTCATAGCCATGTGTAT 60.255 37.037 0.00 0.00 39.16 2.29
396 427 4.953579 ACGGGTAAATTTTCATAGCCATGT 59.046 37.500 0.00 0.00 39.16 3.21
410 441 4.142315 CGTCGGATATGGATACGGGTAAAT 60.142 45.833 0.00 0.00 40.09 1.40
421 452 1.075861 TGGATACCCGTCGGATATGGA 59.924 52.381 14.39 0.00 36.17 3.41
427 458 1.075861 TGGATATGGATACCCGTCGGA 59.924 52.381 14.39 0.00 34.29 4.55
434 465 5.431731 TCCAATGGGTATGGATATGGATACC 59.568 44.000 0.00 9.83 41.98 2.73
455 486 3.851979 TGATCTACCCGTTGGATATCCA 58.148 45.455 20.98 20.98 45.94 3.41
456 487 4.884668 TTGATCTACCCGTTGGATATCC 57.115 45.455 15.39 15.39 34.81 2.59
457 488 5.607477 TGTTTGATCTACCCGTTGGATATC 58.393 41.667 0.00 0.00 34.81 1.63
458 489 5.130477 ACTGTTTGATCTACCCGTTGGATAT 59.870 40.000 0.00 0.00 34.81 1.63
459 490 4.468510 ACTGTTTGATCTACCCGTTGGATA 59.531 41.667 0.00 0.00 34.81 2.59
460 491 3.263425 ACTGTTTGATCTACCCGTTGGAT 59.737 43.478 0.00 0.00 34.81 3.41
461 492 2.635915 ACTGTTTGATCTACCCGTTGGA 59.364 45.455 0.00 0.00 34.81 3.53
462 493 3.053831 ACTGTTTGATCTACCCGTTGG 57.946 47.619 0.00 0.00 37.80 3.77
463 494 4.992319 TGTTACTGTTTGATCTACCCGTTG 59.008 41.667 0.00 0.00 0.00 4.10
464 495 4.992951 GTGTTACTGTTTGATCTACCCGTT 59.007 41.667 0.00 0.00 0.00 4.44
465 496 4.039488 TGTGTTACTGTTTGATCTACCCGT 59.961 41.667 0.00 0.00 0.00 5.28
466 497 4.387862 GTGTGTTACTGTTTGATCTACCCG 59.612 45.833 0.00 0.00 0.00 5.28
467 498 5.302360 TGTGTGTTACTGTTTGATCTACCC 58.698 41.667 0.00 0.00 0.00 3.69
468 499 7.435068 AATGTGTGTTACTGTTTGATCTACC 57.565 36.000 0.00 0.00 0.00 3.18
471 502 9.283768 TGAATAATGTGTGTTACTGTTTGATCT 57.716 29.630 0.00 0.00 0.00 2.75
528 559 9.866655 TGCTATTGGGTTGAGATAAATATTTCT 57.133 29.630 3.39 0.00 0.00 2.52
530 561 9.866655 TCTGCTATTGGGTTGAGATAAATATTT 57.133 29.630 5.89 5.89 0.00 1.40
534 565 9.458727 CATATCTGCTATTGGGTTGAGATAAAT 57.541 33.333 0.00 0.00 0.00 1.40
535 566 8.659527 TCATATCTGCTATTGGGTTGAGATAAA 58.340 33.333 0.00 0.00 0.00 1.40
536 567 8.097038 GTCATATCTGCTATTGGGTTGAGATAA 58.903 37.037 0.00 0.00 0.00 1.75
537 568 7.235399 TGTCATATCTGCTATTGGGTTGAGATA 59.765 37.037 0.00 0.00 0.00 1.98
538 569 6.043590 TGTCATATCTGCTATTGGGTTGAGAT 59.956 38.462 0.00 0.00 0.00 2.75
539 570 5.366477 TGTCATATCTGCTATTGGGTTGAGA 59.634 40.000 0.00 0.00 0.00 3.27
540 571 5.614308 TGTCATATCTGCTATTGGGTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
541 572 5.628797 TGTCATATCTGCTATTGGGTTGA 57.371 39.130 0.00 0.00 0.00 3.18
542 573 5.824624 AGTTGTCATATCTGCTATTGGGTTG 59.175 40.000 0.00 0.00 0.00 3.77
543 574 6.006275 AGTTGTCATATCTGCTATTGGGTT 57.994 37.500 0.00 0.00 0.00 4.11
544 575 5.636903 AGTTGTCATATCTGCTATTGGGT 57.363 39.130 0.00 0.00 0.00 4.51
545 576 6.949352 AAAGTTGTCATATCTGCTATTGGG 57.051 37.500 0.00 0.00 0.00 4.12
546 577 7.227314 TGCTAAAGTTGTCATATCTGCTATTGG 59.773 37.037 0.00 0.00 0.00 3.16
547 578 8.146479 TGCTAAAGTTGTCATATCTGCTATTG 57.854 34.615 0.00 0.00 0.00 1.90
548 579 8.915057 ATGCTAAAGTTGTCATATCTGCTATT 57.085 30.769 0.00 0.00 0.00 1.73
549 580 9.650539 CTATGCTAAAGTTGTCATATCTGCTAT 57.349 33.333 0.00 0.00 0.00 2.97
550 581 8.090831 CCTATGCTAAAGTTGTCATATCTGCTA 58.909 37.037 0.00 0.00 0.00 3.49
551 582 6.933521 CCTATGCTAAAGTTGTCATATCTGCT 59.066 38.462 0.00 0.00 0.00 4.24
552 583 6.708054 ACCTATGCTAAAGTTGTCATATCTGC 59.292 38.462 0.00 0.00 0.00 4.26
553 584 8.668510 AACCTATGCTAAAGTTGTCATATCTG 57.331 34.615 0.00 0.00 0.00 2.90
558 589 9.167311 CTTCTAAACCTATGCTAAAGTTGTCAT 57.833 33.333 0.00 0.00 0.00 3.06
559 590 7.119262 GCTTCTAAACCTATGCTAAAGTTGTCA 59.881 37.037 0.00 0.00 0.00 3.58
560 591 7.334671 AGCTTCTAAACCTATGCTAAAGTTGTC 59.665 37.037 0.00 0.00 0.00 3.18
561 592 7.168905 AGCTTCTAAACCTATGCTAAAGTTGT 58.831 34.615 0.00 0.00 0.00 3.32
562 593 7.334421 TGAGCTTCTAAACCTATGCTAAAGTTG 59.666 37.037 0.00 0.00 0.00 3.16
563 594 7.334671 GTGAGCTTCTAAACCTATGCTAAAGTT 59.665 37.037 0.00 0.00 0.00 2.66
564 595 6.819146 GTGAGCTTCTAAACCTATGCTAAAGT 59.181 38.462 0.00 0.00 0.00 2.66
565 596 6.818644 TGTGAGCTTCTAAACCTATGCTAAAG 59.181 38.462 0.00 0.00 0.00 1.85
566 597 6.707290 TGTGAGCTTCTAAACCTATGCTAAA 58.293 36.000 0.00 0.00 0.00 1.85
567 598 6.294361 TGTGAGCTTCTAAACCTATGCTAA 57.706 37.500 0.00 0.00 0.00 3.09
568 599 5.932619 TGTGAGCTTCTAAACCTATGCTA 57.067 39.130 0.00 0.00 0.00 3.49
569 600 4.826274 TGTGAGCTTCTAAACCTATGCT 57.174 40.909 0.00 0.00 0.00 3.79
570 601 4.695455 TGTTGTGAGCTTCTAAACCTATGC 59.305 41.667 0.00 0.00 0.00 3.14
571 602 5.700832 TGTGTTGTGAGCTTCTAAACCTATG 59.299 40.000 0.00 0.00 0.00 2.23
572 603 5.701290 GTGTGTTGTGAGCTTCTAAACCTAT 59.299 40.000 0.00 0.00 0.00 2.57
573 604 5.054477 GTGTGTTGTGAGCTTCTAAACCTA 58.946 41.667 0.00 0.00 0.00 3.08
574 605 3.877508 GTGTGTTGTGAGCTTCTAAACCT 59.122 43.478 0.00 0.00 0.00 3.50
575 606 3.877508 AGTGTGTTGTGAGCTTCTAAACC 59.122 43.478 0.00 0.00 0.00 3.27
576 607 5.064707 TGAAGTGTGTTGTGAGCTTCTAAAC 59.935 40.000 0.00 0.00 37.17 2.01
577 608 5.064707 GTGAAGTGTGTTGTGAGCTTCTAAA 59.935 40.000 0.00 0.00 37.17 1.85
578 609 4.570772 GTGAAGTGTGTTGTGAGCTTCTAA 59.429 41.667 0.00 0.00 37.17 2.10
579 610 4.119862 GTGAAGTGTGTTGTGAGCTTCTA 58.880 43.478 0.00 0.00 37.17 2.10
580 611 2.939103 GTGAAGTGTGTTGTGAGCTTCT 59.061 45.455 0.00 0.00 37.17 2.85
581 612 2.032178 GGTGAAGTGTGTTGTGAGCTTC 59.968 50.000 0.00 0.00 36.89 3.86
582 613 2.017049 GGTGAAGTGTGTTGTGAGCTT 58.983 47.619 0.00 0.00 0.00 3.74
583 614 1.065491 TGGTGAAGTGTGTTGTGAGCT 60.065 47.619 0.00 0.00 0.00 4.09
584 615 1.378531 TGGTGAAGTGTGTTGTGAGC 58.621 50.000 0.00 0.00 0.00 4.26
585 616 4.637483 ATTTGGTGAAGTGTGTTGTGAG 57.363 40.909 0.00 0.00 0.00 3.51
586 617 5.416013 TGTTATTTGGTGAAGTGTGTTGTGA 59.584 36.000 0.00 0.00 0.00 3.58
587 618 5.645624 TGTTATTTGGTGAAGTGTGTTGTG 58.354 37.500 0.00 0.00 0.00 3.33
588 619 5.906113 TGTTATTTGGTGAAGTGTGTTGT 57.094 34.783 0.00 0.00 0.00 3.32
589 620 6.638063 CAGATGTTATTTGGTGAAGTGTGTTG 59.362 38.462 0.00 0.00 0.00 3.33
590 621 6.239008 CCAGATGTTATTTGGTGAAGTGTGTT 60.239 38.462 0.00 0.00 0.00 3.32
591 622 5.241506 CCAGATGTTATTTGGTGAAGTGTGT 59.758 40.000 0.00 0.00 0.00 3.72
592 623 5.702865 CCAGATGTTATTTGGTGAAGTGTG 58.297 41.667 0.00 0.00 0.00 3.82
593 624 4.218417 GCCAGATGTTATTTGGTGAAGTGT 59.782 41.667 0.00 0.00 34.43 3.55
594 625 4.218200 TGCCAGATGTTATTTGGTGAAGTG 59.782 41.667 0.00 0.00 34.43 3.16
595 626 4.406456 TGCCAGATGTTATTTGGTGAAGT 58.594 39.130 0.00 0.00 34.43 3.01
596 627 5.047802 ACTTGCCAGATGTTATTTGGTGAAG 60.048 40.000 0.00 0.00 34.43 3.02
597 628 4.832266 ACTTGCCAGATGTTATTTGGTGAA 59.168 37.500 0.00 0.00 34.43 3.18
598 629 4.406456 ACTTGCCAGATGTTATTTGGTGA 58.594 39.130 0.00 0.00 34.43 4.02
599 630 4.789012 ACTTGCCAGATGTTATTTGGTG 57.211 40.909 0.00 0.00 34.43 4.17
600 631 5.163519 GCATACTTGCCAGATGTTATTTGGT 60.164 40.000 0.00 0.00 43.38 3.67
601 632 5.284079 GCATACTTGCCAGATGTTATTTGG 58.716 41.667 0.00 0.00 43.38 3.28
616 647 7.149144 CGTTTGTACTGAAATGTTGCATACTTG 60.149 37.037 0.00 0.00 0.00 3.16
617 648 6.855914 CGTTTGTACTGAAATGTTGCATACTT 59.144 34.615 0.00 0.00 0.00 2.24
618 649 6.370593 CGTTTGTACTGAAATGTTGCATACT 58.629 36.000 0.00 0.00 0.00 2.12
619 650 5.567534 CCGTTTGTACTGAAATGTTGCATAC 59.432 40.000 0.00 0.00 0.00 2.39
620 651 5.335269 CCCGTTTGTACTGAAATGTTGCATA 60.335 40.000 0.00 0.00 0.00 3.14
621 652 4.545610 CCGTTTGTACTGAAATGTTGCAT 58.454 39.130 0.00 0.00 0.00 3.96
622 653 3.243234 CCCGTTTGTACTGAAATGTTGCA 60.243 43.478 0.00 0.00 0.00 4.08
623 654 3.243267 ACCCGTTTGTACTGAAATGTTGC 60.243 43.478 0.00 0.00 0.00 4.17
624 655 4.561735 ACCCGTTTGTACTGAAATGTTG 57.438 40.909 0.00 0.00 0.00 3.33
625 656 5.239963 CCTTACCCGTTTGTACTGAAATGTT 59.760 40.000 0.00 0.00 0.00 2.71
626 657 4.758165 CCTTACCCGTTTGTACTGAAATGT 59.242 41.667 0.00 0.00 0.00 2.71
627 658 4.758165 ACCTTACCCGTTTGTACTGAAATG 59.242 41.667 0.00 0.00 0.00 2.32
628 659 4.976864 ACCTTACCCGTTTGTACTGAAAT 58.023 39.130 0.00 0.00 0.00 2.17
629 660 4.420522 ACCTTACCCGTTTGTACTGAAA 57.579 40.909 0.00 0.00 0.00 2.69
630 661 5.481105 CATACCTTACCCGTTTGTACTGAA 58.519 41.667 0.00 0.00 0.00 3.02
631 662 4.081531 CCATACCTTACCCGTTTGTACTGA 60.082 45.833 0.00 0.00 0.00 3.41
632 663 4.186159 CCATACCTTACCCGTTTGTACTG 58.814 47.826 0.00 0.00 0.00 2.74
633 664 3.198417 CCCATACCTTACCCGTTTGTACT 59.802 47.826 0.00 0.00 0.00 2.73
634 665 3.055167 ACCCATACCTTACCCGTTTGTAC 60.055 47.826 0.00 0.00 0.00 2.90
635 666 3.180507 ACCCATACCTTACCCGTTTGTA 58.819 45.455 0.00 0.00 0.00 2.41
636 667 1.987368 ACCCATACCTTACCCGTTTGT 59.013 47.619 0.00 0.00 0.00 2.83
637 668 2.793288 ACCCATACCTTACCCGTTTG 57.207 50.000 0.00 0.00 0.00 2.93
638 669 5.551305 GTATACCCATACCTTACCCGTTT 57.449 43.478 0.00 0.00 32.33 3.60
653 684 1.982958 CCCTGTACCCATGGTATACCC 59.017 57.143 19.42 2.39 40.54 3.69
654 685 2.697967 ACCCTGTACCCATGGTATACC 58.302 52.381 15.50 15.50 40.54 2.73
655 686 6.350445 CGTATAACCCTGTACCCATGGTATAC 60.350 46.154 11.73 13.10 40.54 1.47
656 687 5.716228 CGTATAACCCTGTACCCATGGTATA 59.284 44.000 11.73 0.00 40.54 1.47
657 688 4.529377 CGTATAACCCTGTACCCATGGTAT 59.471 45.833 11.73 0.39 40.54 2.73
658 689 3.896888 CGTATAACCCTGTACCCATGGTA 59.103 47.826 11.73 0.24 38.49 3.25
659 690 2.701951 CGTATAACCCTGTACCCATGGT 59.298 50.000 11.73 1.30 40.86 3.55
660 691 2.701951 ACGTATAACCCTGTACCCATGG 59.298 50.000 4.14 4.14 32.98 3.66
661 692 5.475719 CATACGTATAACCCTGTACCCATG 58.524 45.833 7.96 0.00 0.00 3.66
662 693 4.020839 GCATACGTATAACCCTGTACCCAT 60.021 45.833 7.96 0.00 0.00 4.00
663 694 3.321682 GCATACGTATAACCCTGTACCCA 59.678 47.826 7.96 0.00 0.00 4.51
664 695 3.306294 GGCATACGTATAACCCTGTACCC 60.306 52.174 7.96 0.00 0.00 3.69
665 696 3.306294 GGGCATACGTATAACCCTGTACC 60.306 52.174 27.34 12.48 37.59 3.34
666 697 3.917988 GGGCATACGTATAACCCTGTAC 58.082 50.000 27.34 9.95 37.59 2.90
671 702 2.234661 GGGTAGGGCATACGTATAACCC 59.765 54.545 27.36 27.36 41.17 4.11
672 703 2.094545 CGGGTAGGGCATACGTATAACC 60.095 54.545 7.96 13.00 34.99 2.85
673 704 2.558359 ACGGGTAGGGCATACGTATAAC 59.442 50.000 7.96 3.50 35.85 1.89
674 705 2.557924 CACGGGTAGGGCATACGTATAA 59.442 50.000 7.96 0.00 35.85 0.98
675 706 2.161855 CACGGGTAGGGCATACGTATA 58.838 52.381 7.96 0.00 35.85 1.47
676 707 0.963962 CACGGGTAGGGCATACGTAT 59.036 55.000 1.14 1.14 35.85 3.06
677 708 0.106769 TCACGGGTAGGGCATACGTA 60.107 55.000 2.94 0.00 35.85 3.57
678 709 0.971959 TTCACGGGTAGGGCATACGT 60.972 55.000 2.94 0.00 38.43 3.57
679 710 0.391597 ATTCACGGGTAGGGCATACG 59.608 55.000 2.94 0.00 34.99 3.06
680 711 2.632987 AATTCACGGGTAGGGCATAC 57.367 50.000 0.00 0.00 0.00 2.39
681 712 3.455177 TGTTAATTCACGGGTAGGGCATA 59.545 43.478 0.00 0.00 0.00 3.14
682 713 2.240160 TGTTAATTCACGGGTAGGGCAT 59.760 45.455 0.00 0.00 0.00 4.40
683 714 1.629353 TGTTAATTCACGGGTAGGGCA 59.371 47.619 0.00 0.00 0.00 5.36
684 715 2.406596 TGTTAATTCACGGGTAGGGC 57.593 50.000 0.00 0.00 0.00 5.19
685 716 2.616842 GCATGTTAATTCACGGGTAGGG 59.383 50.000 0.00 0.00 0.00 3.53
686 717 3.275143 TGCATGTTAATTCACGGGTAGG 58.725 45.455 0.00 0.00 0.00 3.18
687 718 4.261155 CCATGCATGTTAATTCACGGGTAG 60.261 45.833 24.58 0.22 0.00 3.18
688 719 3.629855 CCATGCATGTTAATTCACGGGTA 59.370 43.478 24.58 0.00 0.00 3.69
689 720 2.426738 CCATGCATGTTAATTCACGGGT 59.573 45.455 24.58 0.00 0.00 5.28
690 721 2.426738 ACCATGCATGTTAATTCACGGG 59.573 45.455 24.58 7.77 0.00 5.28
691 722 3.781079 ACCATGCATGTTAATTCACGG 57.219 42.857 24.58 8.28 0.00 4.94
692 723 6.058827 TCATACCATGCATGTTAATTCACG 57.941 37.500 24.58 8.87 0.00 4.35
693 724 7.031226 ACTCATACCATGCATGTTAATTCAC 57.969 36.000 24.58 0.00 0.00 3.18
694 725 8.922931 ATACTCATACCATGCATGTTAATTCA 57.077 30.769 24.58 4.72 0.00 2.57
698 729 9.448438 GGATAATACTCATACCATGCATGTTAA 57.552 33.333 24.58 10.30 0.00 2.01
699 730 8.601546 TGGATAATACTCATACCATGCATGTTA 58.398 33.333 24.58 16.10 0.00 2.41
700 731 7.460910 TGGATAATACTCATACCATGCATGTT 58.539 34.615 24.58 14.21 0.00 2.71
701 732 7.019656 TGGATAATACTCATACCATGCATGT 57.980 36.000 24.58 15.01 0.00 3.21
702 733 7.927048 CATGGATAATACTCATACCATGCATG 58.073 38.462 20.19 20.19 44.75 4.06
717 748 9.461312 GGCACAGTTTAATATCCATGGATAATA 57.539 33.333 32.95 26.80 40.07 0.98
718 749 8.172741 AGGCACAGTTTAATATCCATGGATAAT 58.827 33.333 32.95 27.78 40.07 1.28
719 750 7.526041 AGGCACAGTTTAATATCCATGGATAA 58.474 34.615 32.95 19.32 40.07 1.75
720 751 7.090319 AGGCACAGTTTAATATCCATGGATA 57.910 36.000 31.80 31.80 40.80 2.59
721 752 5.957132 AGGCACAGTTTAATATCCATGGAT 58.043 37.500 29.66 29.66 38.54 3.41
722 753 5.387113 AGGCACAGTTTAATATCCATGGA 57.613 39.130 18.88 18.88 0.00 3.41
723 754 9.113838 GATATAGGCACAGTTTAATATCCATGG 57.886 37.037 4.97 4.97 0.00 3.66
724 755 9.113838 GGATATAGGCACAGTTTAATATCCATG 57.886 37.037 12.22 0.00 42.32 3.66
725 756 9.062367 AGGATATAGGCACAGTTTAATATCCAT 57.938 33.333 17.16 4.56 43.95 3.41
726 757 8.449423 AGGATATAGGCACAGTTTAATATCCA 57.551 34.615 17.16 0.00 43.95 3.41
727 758 9.819267 GTAGGATATAGGCACAGTTTAATATCC 57.181 37.037 10.00 10.00 42.75 2.59
728 759 9.819267 GGTAGGATATAGGCACAGTTTAATATC 57.181 37.037 0.00 0.00 0.00 1.63
729 760 8.769359 GGGTAGGATATAGGCACAGTTTAATAT 58.231 37.037 0.00 0.00 0.00 1.28
730 761 7.735777 TGGGTAGGATATAGGCACAGTTTAATA 59.264 37.037 0.00 0.00 0.00 0.98
731 762 6.561070 TGGGTAGGATATAGGCACAGTTTAAT 59.439 38.462 0.00 0.00 0.00 1.40
732 763 5.906495 TGGGTAGGATATAGGCACAGTTTAA 59.094 40.000 0.00 0.00 0.00 1.52
733 764 5.469579 TGGGTAGGATATAGGCACAGTTTA 58.530 41.667 0.00 0.00 0.00 2.01
734 765 4.303794 TGGGTAGGATATAGGCACAGTTT 58.696 43.478 0.00 0.00 0.00 2.66
735 766 3.936461 TGGGTAGGATATAGGCACAGTT 58.064 45.455 0.00 0.00 0.00 3.16
736 767 3.630625 TGGGTAGGATATAGGCACAGT 57.369 47.619 0.00 0.00 0.00 3.55
737 768 3.369892 GCATGGGTAGGATATAGGCACAG 60.370 52.174 0.00 0.00 0.00 3.66
738 769 2.571653 GCATGGGTAGGATATAGGCACA 59.428 50.000 0.00 0.00 0.00 4.57
739 770 2.418746 CGCATGGGTAGGATATAGGCAC 60.419 54.545 0.68 0.00 0.00 5.01
740 771 1.831106 CGCATGGGTAGGATATAGGCA 59.169 52.381 0.68 0.00 0.00 4.75
741 772 1.139058 CCGCATGGGTAGGATATAGGC 59.861 57.143 9.14 0.00 0.00 3.93
754 785 0.175760 CGGATATCCTACCCGCATGG 59.824 60.000 19.61 0.00 36.62 3.66
755 786 3.741029 CGGATATCCTACCCGCATG 57.259 57.895 19.61 0.00 36.62 4.06
759 790 1.475403 ATCTGCGGATATCCTACCCG 58.525 55.000 19.61 7.77 45.51 5.28
767 798 2.105477 GGGCATGGATATCTGCGGATAT 59.895 50.000 25.02 25.02 44.93 1.63
768 799 1.486310 GGGCATGGATATCTGCGGATA 59.514 52.381 17.48 17.48 39.30 2.59
769 800 0.254178 GGGCATGGATATCTGCGGAT 59.746 55.000 13.70 13.70 39.30 4.18
770 801 1.126948 TGGGCATGGATATCTGCGGA 61.127 55.000 9.99 0.00 39.30 5.54
771 802 0.034767 ATGGGCATGGATATCTGCGG 60.035 55.000 9.99 0.00 39.30 5.69
772 803 2.696989 TATGGGCATGGATATCTGCG 57.303 50.000 9.99 0.00 39.30 5.18
773 804 2.621998 GCATATGGGCATGGATATCTGC 59.378 50.000 4.56 8.14 37.66 4.26
774 805 3.220110 GGCATATGGGCATGGATATCTG 58.780 50.000 4.56 0.00 42.77 2.90
775 806 2.176364 GGGCATATGGGCATGGATATCT 59.824 50.000 4.56 0.00 45.66 1.98
776 807 2.091720 TGGGCATATGGGCATGGATATC 60.092 50.000 4.56 0.00 45.66 1.63
777 808 1.931626 TGGGCATATGGGCATGGATAT 59.068 47.619 4.56 0.00 45.66 1.63
778 809 1.380820 TGGGCATATGGGCATGGATA 58.619 50.000 4.56 0.00 45.66 2.59
779 810 0.714180 ATGGGCATATGGGCATGGAT 59.286 50.000 4.56 0.00 45.66 3.41
780 811 1.285667 CTATGGGCATATGGGCATGGA 59.714 52.381 4.56 0.00 45.66 3.41
781 812 1.687054 CCTATGGGCATATGGGCATGG 60.687 57.143 4.56 0.00 45.66 3.66
782 813 1.006281 ACCTATGGGCATATGGGCATG 59.994 52.381 4.56 0.00 45.66 4.06
783 814 1.386066 ACCTATGGGCATATGGGCAT 58.614 50.000 4.56 0.00 45.66 4.40
784 815 2.052249 TACCTATGGGCATATGGGCA 57.948 50.000 4.56 0.00 45.66 5.36
785 816 3.449746 TTTACCTATGGGCATATGGGC 57.550 47.619 4.56 0.00 42.44 5.36
786 817 4.640201 CGATTTTACCTATGGGCATATGGG 59.360 45.833 4.56 0.00 35.06 4.00
787 818 4.096382 GCGATTTTACCTATGGGCATATGG 59.904 45.833 4.56 0.00 35.63 2.74
788 819 4.096382 GGCGATTTTACCTATGGGCATATG 59.904 45.833 0.00 0.00 35.63 1.78
789 820 4.270008 GGCGATTTTACCTATGGGCATAT 58.730 43.478 0.00 0.00 35.63 1.78
790 821 3.681593 GGCGATTTTACCTATGGGCATA 58.318 45.455 0.00 0.00 35.63 3.14
791 822 2.514803 GGCGATTTTACCTATGGGCAT 58.485 47.619 0.00 0.00 35.63 4.40
792 823 1.812324 CGGCGATTTTACCTATGGGCA 60.812 52.381 0.00 0.00 35.63 5.36
793 824 0.872388 CGGCGATTTTACCTATGGGC 59.128 55.000 0.00 0.00 35.63 5.36
794 825 0.872388 GCGGCGATTTTACCTATGGG 59.128 55.000 12.98 0.00 38.88 4.00
795 826 0.872388 GGCGGCGATTTTACCTATGG 59.128 55.000 12.98 0.00 0.00 2.74
796 827 0.872388 GGGCGGCGATTTTACCTATG 59.128 55.000 12.98 0.00 0.00 2.23
797 828 0.250597 GGGGCGGCGATTTTACCTAT 60.251 55.000 12.98 0.00 0.00 2.57
798 829 1.146707 GGGGCGGCGATTTTACCTA 59.853 57.895 12.98 0.00 0.00 3.08
799 830 2.124445 GGGGCGGCGATTTTACCT 60.124 61.111 12.98 0.00 0.00 3.08
800 831 3.579232 CGGGGCGGCGATTTTACC 61.579 66.667 12.98 0.00 0.00 2.85
801 832 2.512057 TCGGGGCGGCGATTTTAC 60.512 61.111 12.98 0.00 0.00 2.01
802 833 2.202960 CTCGGGGCGGCGATTTTA 60.203 61.111 12.98 0.00 0.00 1.52
830 861 1.144057 GGCCCGGTGTCAGTATCAG 59.856 63.158 0.00 0.00 0.00 2.90
925 956 4.277593 CCACGCGGCTGCCAAAAA 62.278 61.111 20.29 0.00 38.08 1.94
951 1211 1.520564 GATGCGATGTACGGCCACA 60.521 57.895 2.24 0.00 42.83 4.17
953 1213 1.067416 GAGATGCGATGTACGGCCA 59.933 57.895 2.24 0.00 42.83 5.36
1180 1440 3.436243 CTCCTCAACTACTTCCTCCACT 58.564 50.000 0.00 0.00 0.00 4.00
1607 1867 3.093057 CACACTACAGAGCTAGGGAAGT 58.907 50.000 0.00 0.00 0.00 3.01
1761 2026 4.729227 TCAACCTTTTTCCAACCACTTC 57.271 40.909 0.00 0.00 0.00 3.01
2057 2325 4.383118 CCTCCACCCCATAATATAAGAGCG 60.383 50.000 0.00 0.00 0.00 5.03
2074 2342 2.165998 ACAACGTACTACTCCCTCCAC 58.834 52.381 0.00 0.00 0.00 4.02
2328 2597 6.605594 GGAGTTCCTAAAGAGAGATCTGAAGA 59.394 42.308 0.00 0.00 0.00 2.87
2348 2617 3.490348 CAAACTTGACATGGGAGGAGTT 58.510 45.455 0.00 0.00 0.00 3.01
2415 2684 1.483415 CAAAAGGGCCAATGCATAGCT 59.517 47.619 18.16 0.00 40.13 3.32
2527 3220 4.878971 CACCAATTTGTATATGTCCGTGGA 59.121 41.667 0.00 0.00 0.00 4.02
2657 3350 4.610680 GCCTTCATATTTTCATACGACGCC 60.611 45.833 0.00 0.00 0.00 5.68
2716 3409 0.458543 GGAGTCTTCGCTCGATTGCA 60.459 55.000 0.00 0.00 36.41 4.08
2764 3457 3.813166 GAGGCAGCAAAAACACTACACTA 59.187 43.478 0.00 0.00 0.00 2.74
3158 3875 1.909700 TCACCTCATCAAAACAGCCC 58.090 50.000 0.00 0.00 0.00 5.19
3226 3943 1.127343 ATAGGCCACTTCTCTGCTCC 58.873 55.000 5.01 0.00 0.00 4.70
3261 3978 4.106197 GCATCTAACGACTGTGAGGTAAG 58.894 47.826 0.00 0.00 0.00 2.34
3278 3995 5.883685 TTCTGACCATTAGATCTGCATCT 57.116 39.130 5.18 0.00 42.48 2.90
3279 3996 6.709397 TCATTTCTGACCATTAGATCTGCATC 59.291 38.462 5.18 0.00 0.00 3.91
3280 3997 6.485984 GTCATTTCTGACCATTAGATCTGCAT 59.514 38.462 5.18 0.00 45.06 3.96
3281 3998 5.819379 GTCATTTCTGACCATTAGATCTGCA 59.181 40.000 5.18 0.00 45.06 4.41
3282 3999 6.297694 GTCATTTCTGACCATTAGATCTGC 57.702 41.667 5.18 0.00 45.06 4.26
3294 4011 1.667724 CTGCCATCCGTCATTTCTGAC 59.332 52.381 0.00 0.00 46.89 3.51
3295 4012 1.554617 TCTGCCATCCGTCATTTCTGA 59.445 47.619 0.00 0.00 0.00 3.27
3296 4013 1.667724 GTCTGCCATCCGTCATTTCTG 59.332 52.381 0.00 0.00 0.00 3.02
3297 4014 1.278985 TGTCTGCCATCCGTCATTTCT 59.721 47.619 0.00 0.00 0.00 2.52
3298 4015 1.398390 GTGTCTGCCATCCGTCATTTC 59.602 52.381 0.00 0.00 0.00 2.17
3299 4016 1.271325 TGTGTCTGCCATCCGTCATTT 60.271 47.619 0.00 0.00 0.00 2.32
3300 4017 0.324614 TGTGTCTGCCATCCGTCATT 59.675 50.000 0.00 0.00 0.00 2.57
3301 4018 0.391661 GTGTGTCTGCCATCCGTCAT 60.392 55.000 0.00 0.00 0.00 3.06
3302 4019 1.005037 GTGTGTCTGCCATCCGTCA 60.005 57.895 0.00 0.00 0.00 4.35
3303 4020 1.741770 GGTGTGTCTGCCATCCGTC 60.742 63.158 0.00 0.00 0.00 4.79
3304 4021 1.841302 ATGGTGTGTCTGCCATCCGT 61.841 55.000 0.00 0.00 41.24 4.69
3305 4022 1.078214 ATGGTGTGTCTGCCATCCG 60.078 57.895 0.00 0.00 41.24 4.18
3309 4026 2.617788 GGTAATGATGGTGTGTCTGCCA 60.618 50.000 0.00 0.00 39.33 4.92
3310 4027 2.017049 GGTAATGATGGTGTGTCTGCC 58.983 52.381 0.00 0.00 0.00 4.85
3311 4028 2.710377 TGGTAATGATGGTGTGTCTGC 58.290 47.619 0.00 0.00 0.00 4.26
3312 4029 4.154737 CAGTTGGTAATGATGGTGTGTCTG 59.845 45.833 0.00 0.00 0.00 3.51
3313 4030 4.041567 TCAGTTGGTAATGATGGTGTGTCT 59.958 41.667 0.00 0.00 0.00 3.41
3314 4031 4.323417 TCAGTTGGTAATGATGGTGTGTC 58.677 43.478 0.00 0.00 0.00 3.67
3315 4032 4.202461 ACTCAGTTGGTAATGATGGTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
3316 4033 4.326826 ACTCAGTTGGTAATGATGGTGTG 58.673 43.478 0.00 0.00 0.00 3.82
3317 4034 4.287067 AGACTCAGTTGGTAATGATGGTGT 59.713 41.667 0.00 0.00 0.00 4.16
3318 4035 4.836825 AGACTCAGTTGGTAATGATGGTG 58.163 43.478 0.00 0.00 0.00 4.17
3319 4036 5.505181 AAGACTCAGTTGGTAATGATGGT 57.495 39.130 0.00 0.00 0.00 3.55
3320 4037 6.824305 AAAAGACTCAGTTGGTAATGATGG 57.176 37.500 0.00 0.00 0.00 3.51
3322 4039 9.838339 CCTATAAAAGACTCAGTTGGTAATGAT 57.162 33.333 0.00 0.00 0.00 2.45
3323 4040 9.042450 TCCTATAAAAGACTCAGTTGGTAATGA 57.958 33.333 0.00 0.00 0.00 2.57
3324 4041 9.319143 CTCCTATAAAAGACTCAGTTGGTAATG 57.681 37.037 0.00 0.00 0.00 1.90
3325 4042 9.047947 ACTCCTATAAAAGACTCAGTTGGTAAT 57.952 33.333 0.00 0.00 0.00 1.89
3326 4043 8.431910 ACTCCTATAAAAGACTCAGTTGGTAA 57.568 34.615 0.00 0.00 0.00 2.85
3327 4044 9.186837 CTACTCCTATAAAAGACTCAGTTGGTA 57.813 37.037 0.00 0.00 0.00 3.25
3328 4045 6.936968 ACTCCTATAAAAGACTCAGTTGGT 57.063 37.500 0.00 0.00 0.00 3.67
3329 4046 8.294954 TCTACTCCTATAAAAGACTCAGTTGG 57.705 38.462 0.00 0.00 0.00 3.77
3330 4047 9.179909 TCTCTACTCCTATAAAAGACTCAGTTG 57.820 37.037 0.00 0.00 0.00 3.16
3331 4048 9.756571 TTCTCTACTCCTATAAAAGACTCAGTT 57.243 33.333 0.00 0.00 0.00 3.16
3332 4049 9.756571 TTTCTCTACTCCTATAAAAGACTCAGT 57.243 33.333 0.00 0.00 0.00 3.41
3334 4051 9.756571 AGTTTCTCTACTCCTATAAAAGACTCA 57.243 33.333 0.00 0.00 0.00 3.41
3339 4056 9.308318 GCTGAAGTTTCTCTACTCCTATAAAAG 57.692 37.037 0.00 0.00 0.00 2.27
3340 4057 7.974501 CGCTGAAGTTTCTCTACTCCTATAAAA 59.025 37.037 0.00 0.00 0.00 1.52
3341 4058 7.416438 CCGCTGAAGTTTCTCTACTCCTATAAA 60.416 40.741 0.00 0.00 0.00 1.40
3342 4059 6.039493 CCGCTGAAGTTTCTCTACTCCTATAA 59.961 42.308 0.00 0.00 0.00 0.98
3343 4060 5.531659 CCGCTGAAGTTTCTCTACTCCTATA 59.468 44.000 0.00 0.00 0.00 1.31
3344 4061 4.339814 CCGCTGAAGTTTCTCTACTCCTAT 59.660 45.833 0.00 0.00 0.00 2.57
3345 4062 3.695060 CCGCTGAAGTTTCTCTACTCCTA 59.305 47.826 0.00 0.00 0.00 2.94
3346 4063 2.494073 CCGCTGAAGTTTCTCTACTCCT 59.506 50.000 0.00 0.00 0.00 3.69
3347 4064 2.882324 CCGCTGAAGTTTCTCTACTCC 58.118 52.381 0.00 0.00 0.00 3.85
3348 4065 2.263945 GCCGCTGAAGTTTCTCTACTC 58.736 52.381 0.00 0.00 0.00 2.59
3349 4066 1.618837 TGCCGCTGAAGTTTCTCTACT 59.381 47.619 0.00 0.00 0.00 2.57
3350 4067 2.080286 TGCCGCTGAAGTTTCTCTAC 57.920 50.000 0.00 0.00 0.00 2.59
3351 4068 2.831685 TTGCCGCTGAAGTTTCTCTA 57.168 45.000 0.00 0.00 0.00 2.43
3352 4069 2.079925 GATTGCCGCTGAAGTTTCTCT 58.920 47.619 0.00 0.00 0.00 3.10
3353 4070 2.079925 AGATTGCCGCTGAAGTTTCTC 58.920 47.619 0.00 0.00 0.00 2.87
3354 4071 2.191128 AGATTGCCGCTGAAGTTTCT 57.809 45.000 0.00 0.00 0.00 2.52
3355 4072 3.790123 GCATAGATTGCCGCTGAAGTTTC 60.790 47.826 0.00 0.00 46.15 2.78
3374 4091 3.990092 TCGCCTCTATAACATTTCGCAT 58.010 40.909 0.00 0.00 0.00 4.73
3375 4092 3.446310 TCGCCTCTATAACATTTCGCA 57.554 42.857 0.00 0.00 0.00 5.10
3380 4097 4.039730 AGACAGCATCGCCTCTATAACATT 59.960 41.667 0.00 0.00 0.00 2.71
3384 4101 3.491342 AGAGACAGCATCGCCTCTATAA 58.509 45.455 0.00 0.00 34.54 0.98
3401 4118 3.458044 AGGACATCCAGTGTGTAGAGA 57.542 47.619 0.00 0.00 42.36 3.10
4096 5160 3.199946 GGTGATATTCTTGGTCCAGTCCA 59.800 47.826 0.00 0.00 35.49 4.02
4290 5364 6.551385 CTAGATAGCATGTTTTGTGGGATC 57.449 41.667 0.00 0.00 0.00 3.36
4447 5521 4.003648 GACAACAAAGACCATGGTAGAGG 58.996 47.826 19.80 10.85 0.00 3.69
4501 5579 6.824553 AGCACTTTCTATATCAGCTCAATCA 58.175 36.000 0.00 0.00 0.00 2.57
4653 5732 5.649557 TGAAAGTTGAAACCATGTTGACAG 58.350 37.500 0.00 0.00 0.00 3.51
4719 5993 2.025767 ATGTCTCTGCTGCCGCCTAG 62.026 60.000 0.00 0.00 34.43 3.02
4729 6003 2.420022 ACGCAATTTACCATGTCTCTGC 59.580 45.455 0.00 0.00 0.00 4.26
4788 6062 3.054728 TGACTTCCTGTTGTGGTTTCTCA 60.055 43.478 0.00 0.00 0.00 3.27
5026 6300 7.661040 AGAATGAAGTTTGACCATTAGTTTGG 58.339 34.615 0.00 0.00 42.82 3.28
5097 6371 3.168035 TGCACATGGGTTTATCCAAGT 57.832 42.857 0.00 0.00 40.62 3.16
5498 6785 0.706433 ATGGGGATGTTGCCACTCTT 59.294 50.000 0.00 0.00 30.67 2.85
5675 6962 3.263859 AAGCCTGCTAGCTGCTGCA 62.264 57.895 26.01 20.12 44.11 4.41
5719 7006 6.414732 ACTAAATGCCATTAACTGCAGACTA 58.585 36.000 23.35 8.49 41.46 2.59
5857 7144 8.821147 ATAGACATGTTTTAGTGTGTTCGTTA 57.179 30.769 0.00 0.00 0.00 3.18
5948 7236 5.393866 ACATGGACTTAACTTGGAACCAAT 58.606 37.500 6.74 0.00 35.20 3.16
6140 7692 7.256286 ACTACCAGTTGTAATCGTTGATAGAC 58.744 38.462 0.00 0.00 0.00 2.59
6142 7694 8.404000 AGTACTACCAGTTGTAATCGTTGATAG 58.596 37.037 0.00 0.00 0.00 2.08
6201 7753 8.981724 TGTAAACATACTGACATACAAGAGAC 57.018 34.615 0.00 0.00 0.00 3.36
6472 8024 7.181361 TCCCTTGATCTGAAAACCATAATGAA 58.819 34.615 0.00 0.00 0.00 2.57
6662 8214 3.885901 ACTCAAAGGTTTTCAGCTTCTCC 59.114 43.478 0.00 0.00 39.96 3.71
6722 8274 6.617371 AGCCTCTATTTCTTCCCTTTCTATCA 59.383 38.462 0.00 0.00 0.00 2.15
6907 8459 9.672673 AAGCAAATAGAAGATAAAGCTACTTCA 57.327 29.630 18.18 9.54 41.37 3.02
8099 9652 5.240183 CAGCCTACAATTAACATCAGGATGG 59.760 44.000 13.40 0.00 42.91 3.51
8250 9803 5.600069 AGTACTCCATCTGCATCTGAATGTA 59.400 40.000 0.00 0.00 35.18 2.29
8256 9809 3.464907 CCAAGTACTCCATCTGCATCTG 58.535 50.000 0.00 0.00 0.00 2.90
8353 9906 4.600012 GCATTCGCTACAGTTACACATT 57.400 40.909 0.00 0.00 34.30 2.71
8416 9969 6.437928 TCAGAATCAAACAAAATCAGAACGG 58.562 36.000 0.00 0.00 0.00 4.44
8943 10508 0.376152 GTGACCGATCGAGCGTTAGA 59.624 55.000 22.70 0.00 0.00 2.10
8944 10509 0.098200 TGTGACCGATCGAGCGTTAG 59.902 55.000 22.70 9.34 0.00 2.34
8945 10510 0.179181 GTGTGACCGATCGAGCGTTA 60.179 55.000 22.70 4.65 0.00 3.18
8946 10511 1.443872 GTGTGACCGATCGAGCGTT 60.444 57.895 22.70 7.83 0.00 4.84
8947 10512 2.178521 GTGTGACCGATCGAGCGT 59.821 61.111 22.70 10.10 0.00 5.07
8948 10513 2.579787 GGTGTGACCGATCGAGCG 60.580 66.667 17.57 17.57 0.00 5.03
8949 10514 1.805945 GTGGTGTGACCGATCGAGC 60.806 63.158 18.66 8.49 42.58 5.03
8950 10515 1.514228 CGTGGTGTGACCGATCGAG 60.514 63.158 18.66 9.42 42.58 4.04
8951 10516 2.564458 CGTGGTGTGACCGATCGA 59.436 61.111 18.66 0.00 42.58 3.59
8952 10517 3.179265 GCGTGGTGTGACCGATCG 61.179 66.667 8.51 8.51 42.58 3.69
8953 10518 3.179265 CGCGTGGTGTGACCGATC 61.179 66.667 0.00 0.00 42.58 3.69
8954 10519 3.986006 ACGCGTGGTGTGACCGAT 61.986 61.111 12.93 0.00 42.58 4.18
8955 10520 4.934942 CACGCGTGGTGTGACCGA 62.935 66.667 31.15 0.00 45.59 4.69
9052 10634 0.388134 GACGTGACGAGCTTGCCTTA 60.388 55.000 13.70 0.00 0.00 2.69
9073 10655 1.978080 TGGCACATGACCATGGTGC 60.978 57.895 25.52 18.93 42.91 5.01
9124 10706 9.418045 GGTCTTCGGTTATAGTAGTACTAGTAG 57.582 40.741 19.63 8.13 33.66 2.57
9125 10707 8.368668 GGGTCTTCGGTTATAGTAGTACTAGTA 58.631 40.741 17.75 17.75 33.66 1.82
9126 10708 7.220740 GGGTCTTCGGTTATAGTAGTACTAGT 58.779 42.308 15.08 14.57 33.66 2.57
9130 10712 4.816925 ACGGGTCTTCGGTTATAGTAGTAC 59.183 45.833 0.00 0.00 0.00 2.73
9216 10798 3.582647 CACCCTTTAAGAGGCCCAAAAAT 59.417 43.478 0.00 0.00 44.85 1.82
9281 10870 5.874261 ACAAAACAAGTTAACAGCAGCAAAT 59.126 32.000 8.61 0.00 0.00 2.32
9387 11005 1.070577 CAAAGTCCGAAGCTTGACACG 60.071 52.381 16.67 8.65 33.89 4.49
9440 12174 3.879892 GTGTGATCAAGGATAAGAAGGGC 59.120 47.826 0.00 0.00 0.00 5.19
9464 12198 1.133216 GCCCGAGAAGAAAATCTTGCC 59.867 52.381 0.00 0.00 36.73 4.52
9490 12224 1.151777 CGCCGTACAGGTAGCAATGG 61.152 60.000 0.00 0.00 43.70 3.16
9491 12225 1.151777 CCGCCGTACAGGTAGCAATG 61.152 60.000 0.00 0.00 43.70 2.82
9554 12288 1.527736 GACGGACATAACAAACACGCA 59.472 47.619 0.00 0.00 0.00 5.24
9641 12377 6.418819 CCTCTTCAACTTTGCAATTTGTACTG 59.581 38.462 16.73 6.98 0.00 2.74
9652 12388 6.143496 GCTTTAACTACCTCTTCAACTTTGC 58.857 40.000 0.00 0.00 0.00 3.68
9653 12389 7.259290 TGCTTTAACTACCTCTTCAACTTTG 57.741 36.000 0.00 0.00 0.00 2.77
9654 12390 7.719633 TGATGCTTTAACTACCTCTTCAACTTT 59.280 33.333 0.00 0.00 0.00 2.66
9663 12399 8.263940 TGTTTGTATGATGCTTTAACTACCTC 57.736 34.615 0.00 0.00 0.00 3.85
9676 12412 5.050644 AGTGTGCACATGTTTGTATGATG 57.949 39.130 24.69 0.00 33.76 3.07
9677 12413 6.816134 TTAGTGTGCACATGTTTGTATGAT 57.184 33.333 24.69 0.55 33.76 2.45
9686 12422 0.804364 CGCCATTAGTGTGCACATGT 59.196 50.000 24.69 15.98 0.00 3.21
9689 12425 0.320050 TCTCGCCATTAGTGTGCACA 59.680 50.000 17.42 17.42 0.00 4.57
9704 12440 3.982475 TGCCTTAATGCTCATACTCTCG 58.018 45.455 4.32 0.00 0.00 4.04
9716 12452 2.595386 GCGACCTTGTTTGCCTTAATG 58.405 47.619 0.00 0.00 0.00 1.90
9717 12453 1.544246 GGCGACCTTGTTTGCCTTAAT 59.456 47.619 0.00 0.00 44.16 1.40
9718 12454 0.955905 GGCGACCTTGTTTGCCTTAA 59.044 50.000 0.00 0.00 44.16 1.85
9742 12478 1.284313 AGGCCTTCTCTTCTCTTGGG 58.716 55.000 0.00 0.00 0.00 4.12
9804 12540 0.533978 TGACTTGCGCAACTAGGCAA 60.534 50.000 21.02 0.00 46.06 4.52
9806 12542 0.375106 GATGACTTGCGCAACTAGGC 59.625 55.000 21.02 13.24 0.00 3.93
9820 12556 0.461548 TCCAGCAGATCCGTGATGAC 59.538 55.000 2.04 0.00 35.82 3.06
9880 12616 2.905996 TTGGAAGCACTGGGGCGAT 61.906 57.895 0.00 0.00 39.27 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.