Multiple sequence alignment - TraesCS2D01G239100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G239100 chr2D 100.000 5882 0 0 1 5882 250633289 250627408 0.000000e+00 10863.0
1 TraesCS2D01G239100 chr2D 98.305 118 2 0 1 118 33934211 33934328 2.150000e-49 207.0
2 TraesCS2D01G239100 chr2D 98.305 118 2 0 1 118 630269623 630269740 2.150000e-49 207.0
3 TraesCS2D01G239100 chr2D 98.305 118 2 0 1 118 630270688 630270805 2.150000e-49 207.0
4 TraesCS2D01G239100 chr2D 85.897 78 5 4 4695 4772 645688631 645688560 1.760000e-10 78.7
5 TraesCS2D01G239100 chr2D 92.500 40 3 0 111 150 596519095 596519134 2.290000e-04 58.4
6 TraesCS2D01G239100 chr2A 98.126 3416 47 12 878 4283 249756145 249752737 0.000000e+00 5938.0
7 TraesCS2D01G239100 chr2A 92.466 1314 36 8 4587 5882 249751760 249750492 0.000000e+00 1820.0
8 TraesCS2D01G239100 chr2A 91.415 431 19 8 474 886 249761890 249761460 5.110000e-160 575.0
9 TraesCS2D01G239100 chr2A 94.293 368 21 0 111 478 249779292 249778925 1.110000e-156 564.0
10 TraesCS2D01G239100 chr2A 96.273 322 9 2 4271 4592 249752178 249751860 5.220000e-145 525.0
11 TraesCS2D01G239100 chr2A 91.860 172 13 1 2394 2564 655039289 655039118 7.620000e-59 239.0
12 TraesCS2D01G239100 chr2B 94.566 2337 86 22 2873 5198 278437532 278439838 0.000000e+00 3574.0
13 TraesCS2D01G239100 chr2B 96.719 2103 46 7 747 2845 278435389 278437472 0.000000e+00 3480.0
14 TraesCS2D01G239100 chr2B 84.866 522 30 20 5209 5704 278439951 278440449 1.150000e-131 481.0
15 TraesCS2D01G239100 chr2B 96.089 179 6 1 5705 5882 278440668 278440846 2.070000e-74 291.0
16 TraesCS2D01G239100 chr2B 98.305 118 2 0 1 118 364319301 364319184 2.150000e-49 207.0
17 TraesCS2D01G239100 chr2B 87.293 181 21 2 2394 2573 740563401 740563580 7.730000e-49 206.0
18 TraesCS2D01G239100 chr2B 92.424 66 3 2 2830 2895 785825976 785825913 6.280000e-15 93.5
19 TraesCS2D01G239100 chr2B 96.970 33 1 0 2784 2816 278437517 278437485 8.230000e-04 56.5
20 TraesCS2D01G239100 chr6A 92.529 174 10 2 2391 2564 297641211 297641381 4.550000e-61 246.0
21 TraesCS2D01G239100 chr6A 91.045 67 4 2 2830 2896 21518353 21518417 8.120000e-14 89.8
22 TraesCS2D01G239100 chr7D 93.373 166 9 1 2399 2564 201885620 201885457 1.640000e-60 244.0
23 TraesCS2D01G239100 chr7D 87.879 198 18 6 2372 2564 397554881 397555077 1.650000e-55 228.0
24 TraesCS2D01G239100 chr7D 85.211 142 17 4 5575 5716 541964005 541964142 6.140000e-30 143.0
25 TraesCS2D01G239100 chr7D 92.647 68 2 3 2830 2896 5068114 5068179 1.750000e-15 95.3
26 TraesCS2D01G239100 chr7D 100.000 33 0 0 118 150 534212782 534212814 1.770000e-05 62.1
27 TraesCS2D01G239100 chr7D 100.000 33 0 0 118 150 569793914 569793946 1.770000e-05 62.1
28 TraesCS2D01G239100 chr6D 93.827 162 10 0 2403 2564 93646226 93646387 1.640000e-60 244.0
29 TraesCS2D01G239100 chr6D 84.000 125 15 5 5585 5709 287023318 287023437 1.340000e-21 115.0
30 TraesCS2D01G239100 chr6D 82.576 132 18 4 5585 5716 53606428 53606554 1.730000e-20 111.0
31 TraesCS2D01G239100 chr6D 94.915 59 2 1 2843 2900 392125498 392125556 2.260000e-14 91.6
32 TraesCS2D01G239100 chr6D 75.172 145 28 6 5571 5711 98110799 98110939 1.770000e-05 62.1
33 TraesCS2D01G239100 chr5D 93.827 162 10 0 2403 2564 150835568 150835729 1.640000e-60 244.0
34 TraesCS2D01G239100 chr5D 87.500 176 20 2 2399 2574 5426070 5426243 9.990000e-48 202.0
35 TraesCS2D01G239100 chr5D 98.077 52 1 0 2843 2894 216627813 216627762 2.260000e-14 91.6
36 TraesCS2D01G239100 chr4B 92.593 162 12 0 2403 2564 517751220 517751059 3.540000e-57 233.0
37 TraesCS2D01G239100 chr4B 87.368 95 11 1 5576 5669 619362189 619362283 2.240000e-19 108.0
38 TraesCS2D01G239100 chr3B 91.228 171 15 0 2403 2573 552226568 552226398 3.540000e-57 233.0
39 TraesCS2D01G239100 chr5A 88.268 179 19 2 2401 2578 475324366 475324543 4.620000e-51 213.0
40 TraesCS2D01G239100 chr5A 97.458 118 3 0 1 118 442270774 442270891 9.990000e-48 202.0
41 TraesCS2D01G239100 chr5A 89.855 69 6 1 2833 2901 50753518 50753451 2.920000e-13 87.9
42 TraesCS2D01G239100 chr1D 99.153 118 1 0 1 118 459899301 459899184 4.620000e-51 213.0
43 TraesCS2D01G239100 chr1D 94.737 38 2 0 110 147 341615563 341615600 6.370000e-05 60.2
44 TraesCS2D01G239100 chr1D 94.737 38 2 0 110 147 341626279 341626316 6.370000e-05 60.2
45 TraesCS2D01G239100 chr1A 88.571 175 18 2 2403 2577 291255822 291255994 1.660000e-50 211.0
46 TraesCS2D01G239100 chr1A 87.097 186 21 3 2399 2582 71070761 71070577 2.150000e-49 207.0
47 TraesCS2D01G239100 chr1A 84.615 143 18 4 5574 5716 552982433 552982295 7.950000e-29 139.0
48 TraesCS2D01G239100 chr1A 100.000 33 0 0 118 150 100913436 100913404 1.770000e-05 62.1
49 TraesCS2D01G239100 chr4A 98.305 118 2 0 1 118 310762801 310762918 2.150000e-49 207.0
50 TraesCS2D01G239100 chr4A 82.877 146 21 4 5571 5716 674434881 674435022 1.720000e-25 128.0
51 TraesCS2D01G239100 chr4A 78.400 125 22 5 4631 4751 470685904 470685781 6.320000e-10 76.8
52 TraesCS2D01G239100 chr3D 98.305 118 1 1 1 118 213392884 213392768 7.730000e-49 206.0
53 TraesCS2D01G239100 chr3D 100.000 53 0 0 2843 2895 338881604 338881552 1.350000e-16 99.0
54 TraesCS2D01G239100 chr3D 98.214 56 0 1 2843 2897 6459427 6459372 4.850000e-16 97.1
55 TraesCS2D01G239100 chr3D 94.737 38 2 0 110 147 196143964 196144001 6.370000e-05 60.2
56 TraesCS2D01G239100 chr3D 100.000 29 0 0 5585 5613 17842216 17842188 3.000000e-03 54.7
57 TraesCS2D01G239100 chr7B 87.709 179 15 6 2400 2577 377029587 377029415 9.990000e-48 202.0
58 TraesCS2D01G239100 chr5B 97.458 118 3 0 1 118 429032819 429032936 9.990000e-48 202.0
59 TraesCS2D01G239100 chr1B 86.957 184 18 3 2402 2581 132274967 132274786 9.990000e-48 202.0
60 TraesCS2D01G239100 chr1B 100.000 32 0 0 119 150 162343240 162343209 6.370000e-05 60.2
61 TraesCS2D01G239100 chr3A 84.733 131 17 3 5575 5704 497647849 497647721 1.720000e-25 128.0
62 TraesCS2D01G239100 chr4D 80.488 123 17 6 4624 4742 105141633 105141752 2.920000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G239100 chr2D 250627408 250633289 5881 True 10863.0 10863 100.000000 1 5882 1 chr2D.!!$R1 5881
1 TraesCS2D01G239100 chr2D 630269623 630270805 1182 False 207.0 207 98.305000 1 118 2 chr2D.!!$F3 117
2 TraesCS2D01G239100 chr2A 249750492 249756145 5653 True 2761.0 5938 95.621667 878 5882 3 chr2A.!!$R4 5004
3 TraesCS2D01G239100 chr2B 278435389 278440846 5457 False 1956.5 3574 93.060000 747 5882 4 chr2B.!!$F2 5135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.025513 CGAGCGTGATGTAAGCTTGC 59.974 55.000 9.86 8.72 44.36 4.01 F
633 634 0.105658 CTTCGGTCCAGGGGAGGATA 60.106 60.000 0.00 0.00 40.42 2.59 F
640 641 0.194587 CCAGGGGAGGATAGTGGGAT 59.805 60.000 0.00 0.00 0.00 3.85 F
2175 2320 0.320160 GCCTGTCGTTTTAGGACGGT 60.320 55.000 0.00 0.00 42.98 4.83 F
3088 3269 1.871039 GCGGTGCTTTGAAGTAAGACA 59.129 47.619 0.00 0.00 0.00 3.41 F
3089 3270 2.484264 GCGGTGCTTTGAAGTAAGACAT 59.516 45.455 0.00 0.00 0.00 3.06 F
3397 3578 3.134458 GGTAGCATGTCTAGGCATGTTC 58.866 50.000 32.06 22.67 45.75 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2224 1.073923 GTCCAAAGAAAGGGGAGCTGA 59.926 52.381 0.00 0.0 0.00 4.26 R
2602 2747 2.609350 TGTTTACGATTACCTGGCGTC 58.391 47.619 0.34 0.0 39.24 5.19 R
2740 2888 8.837389 GTGTAATAAAAGAGAACACAAGGACTT 58.163 33.333 0.00 0.0 40.08 3.01 R
3129 3310 5.532779 GGGAATATTGCTAGAAAGGTGAAGG 59.467 44.000 6.93 0.0 0.00 3.46 R
4361 5202 1.066918 GCATGGGCATTGTGCTAGC 59.933 57.895 8.10 8.1 44.28 3.42 R
4492 5333 2.034532 TCCGACGCCTACCACTCA 59.965 61.111 0.00 0.0 0.00 3.41 R
5275 6326 1.454653 GTAGTGGCGTCGTCAAACTTC 59.545 52.381 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.163591 TGTGTTCGTGTATGTCCGATAGATT 60.164 40.000 0.00 0.00 39.76 2.40
122 123 9.613428 TGATTTCGGAGTTTGTATATTTGATCT 57.387 29.630 0.00 0.00 0.00 2.75
126 127 8.420374 TCGGAGTTTGTATATTTGATCTTGAC 57.580 34.615 0.00 0.00 0.00 3.18
127 128 8.038351 TCGGAGTTTGTATATTTGATCTTGACA 58.962 33.333 0.00 0.00 0.00 3.58
128 129 8.664798 CGGAGTTTGTATATTTGATCTTGACAA 58.335 33.333 0.00 0.00 0.00 3.18
142 143 4.835678 TCTTGACAAAGATCTGCATGCTA 58.164 39.130 20.33 7.56 37.51 3.49
144 145 3.273434 TGACAAAGATCTGCATGCTACC 58.727 45.455 20.33 5.58 0.00 3.18
148 149 2.616634 AGATCTGCATGCTACCACAG 57.383 50.000 20.33 6.69 0.00 3.66
149 150 2.113807 AGATCTGCATGCTACCACAGA 58.886 47.619 20.33 12.36 42.89 3.41
152 153 1.205655 TCTGCATGCTACCACAGACTC 59.794 52.381 20.33 0.00 34.35 3.36
153 154 0.250234 TGCATGCTACCACAGACTCC 59.750 55.000 20.33 0.00 0.00 3.85
154 155 0.250234 GCATGCTACCACAGACTCCA 59.750 55.000 11.37 0.00 0.00 3.86
156 157 2.558378 CATGCTACCACAGACTCCATG 58.442 52.381 0.00 0.00 0.00 3.66
157 158 1.937191 TGCTACCACAGACTCCATGA 58.063 50.000 0.00 0.00 0.00 3.07
158 159 2.470990 TGCTACCACAGACTCCATGAT 58.529 47.619 0.00 0.00 0.00 2.45
159 160 2.169144 TGCTACCACAGACTCCATGATG 59.831 50.000 0.00 0.00 0.00 3.07
172 173 2.380941 CCATGATGATGGCCTTGACAA 58.619 47.619 3.32 0.00 43.00 3.18
174 175 3.181479 CCATGATGATGGCCTTGACAAAG 60.181 47.826 3.32 0.00 43.00 2.77
175 176 3.438216 TGATGATGGCCTTGACAAAGA 57.562 42.857 3.32 0.00 35.19 2.52
176 177 3.972133 TGATGATGGCCTTGACAAAGAT 58.028 40.909 3.32 0.00 35.19 2.40
177 178 3.949754 TGATGATGGCCTTGACAAAGATC 59.050 43.478 3.32 0.00 35.19 2.75
178 179 3.726557 TGATGGCCTTGACAAAGATCT 57.273 42.857 3.32 0.00 35.19 2.75
179 180 3.349927 TGATGGCCTTGACAAAGATCTG 58.650 45.455 3.32 0.00 35.19 2.90
180 181 1.538047 TGGCCTTGACAAAGATCTGC 58.462 50.000 3.32 0.00 35.19 4.26
181 182 1.202915 TGGCCTTGACAAAGATCTGCA 60.203 47.619 3.32 0.00 35.19 4.41
182 183 2.097825 GGCCTTGACAAAGATCTGCAT 58.902 47.619 0.00 0.00 35.19 3.96
183 184 2.159282 GGCCTTGACAAAGATCTGCATG 60.159 50.000 0.00 0.00 35.19 4.06
184 185 2.734492 GCCTTGACAAAGATCTGCATGC 60.734 50.000 11.82 11.82 35.19 4.06
185 186 2.753452 CCTTGACAAAGATCTGCATGCT 59.247 45.455 20.33 0.00 35.19 3.79
186 187 3.943381 CCTTGACAAAGATCTGCATGCTA 59.057 43.478 20.33 7.56 35.19 3.49
188 189 5.277876 CCTTGACAAAGATCTGCATGCTATC 60.278 44.000 20.33 20.01 35.19 2.08
189 190 4.773013 TGACAAAGATCTGCATGCTATCA 58.227 39.130 25.55 6.97 0.00 2.15
190 191 4.573607 TGACAAAGATCTGCATGCTATCAC 59.426 41.667 25.55 12.83 0.00 3.06
191 192 3.558829 ACAAAGATCTGCATGCTATCACG 59.441 43.478 25.55 18.19 0.00 4.35
192 193 2.452295 AGATCTGCATGCTATCACGG 57.548 50.000 25.55 8.15 0.00 4.94
193 194 1.966354 AGATCTGCATGCTATCACGGA 59.034 47.619 25.55 12.01 0.00 4.69
194 195 2.064762 GATCTGCATGCTATCACGGAC 58.935 52.381 20.33 0.00 0.00 4.79
195 196 1.114627 TCTGCATGCTATCACGGACT 58.885 50.000 20.33 0.00 0.00 3.85
196 197 1.067669 TCTGCATGCTATCACGGACTC 59.932 52.381 20.33 0.00 0.00 3.36
197 198 0.104855 TGCATGCTATCACGGACTCC 59.895 55.000 20.33 0.00 0.00 3.85
198 199 0.104855 GCATGCTATCACGGACTCCA 59.895 55.000 11.37 0.00 0.00 3.86
199 200 1.270518 GCATGCTATCACGGACTCCAT 60.271 52.381 11.37 0.00 0.00 3.41
200 201 2.410939 CATGCTATCACGGACTCCATG 58.589 52.381 0.00 0.00 0.00 3.66
201 202 0.752658 TGCTATCACGGACTCCATGG 59.247 55.000 4.97 4.97 0.00 3.66
202 203 0.753262 GCTATCACGGACTCCATGGT 59.247 55.000 12.58 0.00 0.00 3.55
203 204 1.539065 GCTATCACGGACTCCATGGTG 60.539 57.143 12.58 12.42 0.00 4.17
204 205 2.031870 CTATCACGGACTCCATGGTGA 58.968 52.381 20.43 11.61 42.88 4.02
205 206 1.500474 ATCACGGACTCCATGGTGAT 58.500 50.000 20.43 13.38 43.30 3.06
206 207 0.536724 TCACGGACTCCATGGTGATG 59.463 55.000 20.43 11.90 34.71 3.07
215 216 2.142356 CCATGGTGATGGCCTTAACA 57.858 50.000 3.32 0.00 43.00 2.41
216 217 2.455557 CCATGGTGATGGCCTTAACAA 58.544 47.619 3.32 0.00 43.00 2.83
217 218 2.830923 CCATGGTGATGGCCTTAACAAA 59.169 45.455 3.32 0.00 43.00 2.83
218 219 3.119029 CCATGGTGATGGCCTTAACAAAG 60.119 47.826 3.32 0.00 43.00 2.77
219 220 3.517296 TGGTGATGGCCTTAACAAAGA 57.483 42.857 3.32 0.00 0.00 2.52
220 221 4.046286 TGGTGATGGCCTTAACAAAGAT 57.954 40.909 3.32 0.00 0.00 2.40
221 222 4.016444 TGGTGATGGCCTTAACAAAGATC 58.984 43.478 3.32 0.00 0.00 2.75
222 223 4.263905 TGGTGATGGCCTTAACAAAGATCT 60.264 41.667 3.32 0.00 0.00 2.75
223 224 4.096984 GGTGATGGCCTTAACAAAGATCTG 59.903 45.833 3.32 0.00 0.00 2.90
224 225 3.696051 TGATGGCCTTAACAAAGATCTGC 59.304 43.478 3.32 0.00 0.00 4.26
225 226 3.153369 TGGCCTTAACAAAGATCTGCA 57.847 42.857 3.32 0.00 0.00 4.41
226 227 3.700538 TGGCCTTAACAAAGATCTGCAT 58.299 40.909 3.32 0.00 0.00 3.96
227 228 4.854173 TGGCCTTAACAAAGATCTGCATA 58.146 39.130 3.32 0.00 0.00 3.14
228 229 4.640201 TGGCCTTAACAAAGATCTGCATAC 59.360 41.667 3.32 0.00 0.00 2.39
229 230 4.884164 GGCCTTAACAAAGATCTGCATACT 59.116 41.667 0.00 0.00 0.00 2.12
230 231 6.055588 GGCCTTAACAAAGATCTGCATACTA 58.944 40.000 0.00 0.00 0.00 1.82
231 232 6.017852 GGCCTTAACAAAGATCTGCATACTAC 60.018 42.308 0.00 0.00 0.00 2.73
232 233 6.763610 GCCTTAACAAAGATCTGCATACTACT 59.236 38.462 0.00 0.00 0.00 2.57
233 234 7.926555 GCCTTAACAAAGATCTGCATACTACTA 59.073 37.037 0.00 0.00 0.00 1.82
234 235 9.250624 CCTTAACAAAGATCTGCATACTACTAC 57.749 37.037 0.00 0.00 0.00 2.73
235 236 9.803315 CTTAACAAAGATCTGCATACTACTACA 57.197 33.333 0.00 0.00 0.00 2.74
236 237 9.803315 TTAACAAAGATCTGCATACTACTACAG 57.197 33.333 0.00 0.00 0.00 2.74
237 238 7.646548 ACAAAGATCTGCATACTACTACAGA 57.353 36.000 0.00 0.00 42.89 3.41
243 244 7.686438 ATCTGCATACTACTACAGATCTCAG 57.314 40.000 0.00 0.00 44.50 3.35
244 245 6.000840 TCTGCATACTACTACAGATCTCAGG 58.999 44.000 0.00 0.00 34.35 3.86
245 246 5.073428 TGCATACTACTACAGATCTCAGGG 58.927 45.833 0.00 0.00 0.00 4.45
246 247 5.163088 TGCATACTACTACAGATCTCAGGGA 60.163 44.000 0.00 0.00 0.00 4.20
247 248 5.414454 GCATACTACTACAGATCTCAGGGAG 59.586 48.000 0.00 0.00 0.00 4.30
248 249 6.745759 GCATACTACTACAGATCTCAGGGAGA 60.746 46.154 0.00 0.00 43.20 3.71
262 263 7.928307 TCTCAGGGAGATTATTTTGACAAAG 57.072 36.000 0.10 0.00 33.35 2.77
263 264 6.375455 TCTCAGGGAGATTATTTTGACAAAGC 59.625 38.462 0.10 0.00 33.35 3.51
264 265 5.123820 TCAGGGAGATTATTTTGACAAAGCG 59.876 40.000 0.10 0.00 0.00 4.68
265 266 5.010282 AGGGAGATTATTTTGACAAAGCGT 58.990 37.500 0.10 0.00 0.00 5.07
266 267 5.476945 AGGGAGATTATTTTGACAAAGCGTT 59.523 36.000 0.10 0.00 0.00 4.84
267 268 5.800438 GGGAGATTATTTTGACAAAGCGTTC 59.200 40.000 0.10 0.00 0.00 3.95
268 269 6.378582 GGAGATTATTTTGACAAAGCGTTCA 58.621 36.000 0.10 0.00 0.00 3.18
269 270 6.305638 GGAGATTATTTTGACAAAGCGTTCAC 59.694 38.462 0.10 0.00 0.00 3.18
270 271 6.970484 AGATTATTTTGACAAAGCGTTCACT 58.030 32.000 0.10 0.00 0.00 3.41
271 272 7.425606 AGATTATTTTGACAAAGCGTTCACTT 58.574 30.769 0.10 0.00 0.00 3.16
272 273 6.804534 TTATTTTGACAAAGCGTTCACTTG 57.195 33.333 0.10 0.00 0.00 3.16
273 274 2.842208 TTGACAAAGCGTTCACTTGG 57.158 45.000 0.00 0.00 0.00 3.61
274 275 0.380378 TGACAAAGCGTTCACTTGGC 59.620 50.000 0.00 0.00 0.00 4.52
275 276 0.657368 GACAAAGCGTTCACTTGGCG 60.657 55.000 0.00 0.00 0.00 5.69
276 277 1.355210 CAAAGCGTTCACTTGGCGT 59.645 52.632 0.00 0.00 0.00 5.68
277 278 0.657368 CAAAGCGTTCACTTGGCGTC 60.657 55.000 0.00 0.00 0.00 5.19
278 279 0.814010 AAAGCGTTCACTTGGCGTCT 60.814 50.000 0.00 0.00 0.00 4.18
279 280 0.814010 AAGCGTTCACTTGGCGTCTT 60.814 50.000 0.00 0.00 0.00 3.01
280 281 0.814010 AGCGTTCACTTGGCGTCTTT 60.814 50.000 0.00 0.00 0.00 2.52
281 282 0.384353 GCGTTCACTTGGCGTCTTTC 60.384 55.000 0.00 0.00 0.00 2.62
282 283 0.234884 CGTTCACTTGGCGTCTTTCC 59.765 55.000 0.00 0.00 0.00 3.13
283 284 0.591659 GTTCACTTGGCGTCTTTCCC 59.408 55.000 0.00 0.00 0.00 3.97
284 285 0.472471 TTCACTTGGCGTCTTTCCCT 59.528 50.000 0.00 0.00 0.00 4.20
285 286 0.250295 TCACTTGGCGTCTTTCCCTG 60.250 55.000 0.00 0.00 0.00 4.45
286 287 1.073199 ACTTGGCGTCTTTCCCTGG 59.927 57.895 0.00 0.00 0.00 4.45
287 288 2.282180 TTGGCGTCTTTCCCTGGC 60.282 61.111 0.00 0.00 0.00 4.85
288 289 3.126703 TTGGCGTCTTTCCCTGGCA 62.127 57.895 0.00 0.00 34.88 4.92
289 290 2.282180 GGCGTCTTTCCCTGGCAA 60.282 61.111 0.00 0.00 0.00 4.52
290 291 2.335712 GGCGTCTTTCCCTGGCAAG 61.336 63.158 0.00 0.00 0.00 4.01
291 292 1.302511 GCGTCTTTCCCTGGCAAGA 60.303 57.895 0.00 3.16 0.00 3.02
292 293 0.889186 GCGTCTTTCCCTGGCAAGAA 60.889 55.000 7.84 0.00 30.76 2.52
293 294 1.160137 CGTCTTTCCCTGGCAAGAAG 58.840 55.000 7.84 6.73 30.76 2.85
294 295 1.539157 GTCTTTCCCTGGCAAGAAGG 58.461 55.000 7.84 3.47 30.76 3.46
295 296 0.251341 TCTTTCCCTGGCAAGAAGGC 60.251 55.000 4.53 0.00 44.50 4.35
296 297 0.251519 CTTTCCCTGGCAAGAAGGCT 60.252 55.000 0.00 0.00 44.55 4.58
297 298 1.004745 CTTTCCCTGGCAAGAAGGCTA 59.995 52.381 0.00 0.00 44.55 3.93
298 299 1.298953 TTCCCTGGCAAGAAGGCTAT 58.701 50.000 0.00 0.00 44.55 2.97
299 300 1.298953 TCCCTGGCAAGAAGGCTATT 58.701 50.000 0.00 0.00 44.55 1.73
300 301 1.064463 TCCCTGGCAAGAAGGCTATTG 60.064 52.381 7.76 7.76 44.55 1.90
301 302 1.341383 CCCTGGCAAGAAGGCTATTGT 60.341 52.381 12.37 0.00 44.55 2.71
302 303 1.747355 CCTGGCAAGAAGGCTATTGTG 59.253 52.381 12.37 0.00 44.55 3.33
303 304 1.747355 CTGGCAAGAAGGCTATTGTGG 59.253 52.381 12.37 2.38 44.55 4.17
304 305 0.457443 GGCAAGAAGGCTATTGTGGC 59.543 55.000 12.37 6.30 40.24 5.01
305 306 1.467920 GCAAGAAGGCTATTGTGGCT 58.532 50.000 12.37 0.00 45.04 4.75
306 307 1.403323 GCAAGAAGGCTATTGTGGCTC 59.597 52.381 12.37 0.00 42.20 4.70
307 308 1.667724 CAAGAAGGCTATTGTGGCTCG 59.332 52.381 4.62 0.00 42.20 5.03
308 309 0.905357 AGAAGGCTATTGTGGCTCGT 59.095 50.000 0.00 0.00 42.20 4.18
309 310 1.009829 GAAGGCTATTGTGGCTCGTG 58.990 55.000 0.00 0.00 42.20 4.35
310 311 0.324943 AAGGCTATTGTGGCTCGTGT 59.675 50.000 0.00 0.00 42.20 4.49
311 312 1.191535 AGGCTATTGTGGCTCGTGTA 58.808 50.000 0.00 0.00 38.54 2.90
312 313 1.134788 AGGCTATTGTGGCTCGTGTAC 60.135 52.381 0.00 0.00 38.54 2.90
313 314 1.404986 GGCTATTGTGGCTCGTGTACA 60.405 52.381 0.00 0.00 0.00 2.90
314 315 1.927174 GCTATTGTGGCTCGTGTACAG 59.073 52.381 0.00 0.00 0.00 2.74
315 316 2.674177 GCTATTGTGGCTCGTGTACAGT 60.674 50.000 0.00 0.00 0.00 3.55
316 317 2.543777 ATTGTGGCTCGTGTACAGTT 57.456 45.000 0.00 0.00 0.00 3.16
317 318 1.577468 TTGTGGCTCGTGTACAGTTG 58.423 50.000 0.00 0.00 0.00 3.16
318 319 0.249699 TGTGGCTCGTGTACAGTTGG 60.250 55.000 0.00 0.00 0.00 3.77
319 320 0.949105 GTGGCTCGTGTACAGTTGGG 60.949 60.000 0.00 0.00 0.00 4.12
320 321 2.033194 GGCTCGTGTACAGTTGGGC 61.033 63.158 0.00 0.24 0.00 5.36
321 322 2.380410 GCTCGTGTACAGTTGGGCG 61.380 63.158 0.00 0.00 0.00 6.13
322 323 1.287815 CTCGTGTACAGTTGGGCGA 59.712 57.895 0.00 0.00 0.00 5.54
323 324 0.732880 CTCGTGTACAGTTGGGCGAG 60.733 60.000 14.42 14.42 39.50 5.03
324 325 1.006571 CGTGTACAGTTGGGCGAGT 60.007 57.895 0.00 0.00 0.00 4.18
325 326 0.241749 CGTGTACAGTTGGGCGAGTA 59.758 55.000 0.00 0.00 0.00 2.59
326 327 1.336148 CGTGTACAGTTGGGCGAGTAA 60.336 52.381 0.00 0.00 0.00 2.24
327 328 2.758009 GTGTACAGTTGGGCGAGTAAA 58.242 47.619 0.00 0.00 0.00 2.01
328 329 3.132925 GTGTACAGTTGGGCGAGTAAAA 58.867 45.455 0.00 0.00 0.00 1.52
329 330 3.059393 GTGTACAGTTGGGCGAGTAAAAC 60.059 47.826 0.00 0.00 0.00 2.43
330 331 1.601166 ACAGTTGGGCGAGTAAAACC 58.399 50.000 0.00 0.00 0.00 3.27
331 332 1.134037 ACAGTTGGGCGAGTAAAACCA 60.134 47.619 0.00 0.00 0.00 3.67
332 333 1.950909 CAGTTGGGCGAGTAAAACCAA 59.049 47.619 0.00 0.00 40.44 3.67
333 334 2.556622 CAGTTGGGCGAGTAAAACCAAT 59.443 45.455 0.00 0.00 44.04 3.16
334 335 2.556622 AGTTGGGCGAGTAAAACCAATG 59.443 45.455 0.00 0.00 44.04 2.82
335 336 1.540267 TGGGCGAGTAAAACCAATGG 58.460 50.000 0.00 0.00 0.00 3.16
336 337 1.202952 TGGGCGAGTAAAACCAATGGT 60.203 47.619 0.00 0.00 37.65 3.55
337 338 1.471287 GGGCGAGTAAAACCAATGGTC 59.529 52.381 4.95 0.00 33.12 4.02
338 339 1.471287 GGCGAGTAAAACCAATGGTCC 59.529 52.381 4.95 0.00 33.12 4.46
339 340 1.471287 GCGAGTAAAACCAATGGTCCC 59.529 52.381 4.95 0.00 33.12 4.46
340 341 2.089201 CGAGTAAAACCAATGGTCCCC 58.911 52.381 4.95 0.00 33.12 4.81
341 342 2.553466 CGAGTAAAACCAATGGTCCCCA 60.553 50.000 4.95 0.00 33.12 4.96
343 344 4.626771 CGAGTAAAACCAATGGTCCCCATA 60.627 45.833 4.95 0.00 44.40 2.74
344 345 4.606210 AGTAAAACCAATGGTCCCCATAC 58.394 43.478 4.95 5.30 44.40 2.39
345 346 2.543037 AAACCAATGGTCCCCATACC 57.457 50.000 4.95 0.00 44.40 2.73
346 347 0.257616 AACCAATGGTCCCCATACCG 59.742 55.000 4.95 0.00 44.40 4.02
347 348 0.622154 ACCAATGGTCCCCATACCGA 60.622 55.000 0.00 0.00 44.40 4.69
348 349 0.771127 CCAATGGTCCCCATACCGAT 59.229 55.000 0.00 0.00 44.40 4.18
349 350 1.982226 CCAATGGTCCCCATACCGATA 59.018 52.381 0.00 0.00 44.40 2.92
350 351 2.027192 CCAATGGTCCCCATACCGATAG 60.027 54.545 0.00 0.00 44.40 2.08
351 352 2.637872 CAATGGTCCCCATACCGATAGT 59.362 50.000 0.00 0.00 44.40 2.12
352 353 2.482414 TGGTCCCCATACCGATAGTT 57.518 50.000 0.00 0.00 42.91 2.24
353 354 2.043992 TGGTCCCCATACCGATAGTTG 58.956 52.381 0.00 0.00 42.91 3.16
354 355 1.346722 GGTCCCCATACCGATAGTTGG 59.653 57.143 0.00 0.00 0.00 3.77
355 356 1.053424 TCCCCATACCGATAGTTGGC 58.947 55.000 0.00 0.00 0.00 4.52
356 357 0.762418 CCCCATACCGATAGTTGGCA 59.238 55.000 0.00 0.00 0.00 4.92
357 358 1.351017 CCCCATACCGATAGTTGGCAT 59.649 52.381 0.00 0.00 0.00 4.40
358 359 2.615493 CCCCATACCGATAGTTGGCATC 60.615 54.545 0.00 0.00 0.00 3.91
359 360 2.038426 CCCATACCGATAGTTGGCATCA 59.962 50.000 0.00 0.00 0.00 3.07
360 361 3.307691 CCCATACCGATAGTTGGCATCAT 60.308 47.826 0.00 0.00 0.00 2.45
361 362 3.935203 CCATACCGATAGTTGGCATCATC 59.065 47.826 0.00 0.00 0.00 2.92
362 363 4.323028 CCATACCGATAGTTGGCATCATCT 60.323 45.833 0.00 0.00 0.00 2.90
363 364 5.105351 CCATACCGATAGTTGGCATCATCTA 60.105 44.000 0.00 0.00 31.91 1.98
364 365 4.527509 ACCGATAGTTGGCATCATCTAG 57.472 45.455 0.00 0.00 31.16 2.43
365 366 4.152647 ACCGATAGTTGGCATCATCTAGA 58.847 43.478 0.00 0.00 31.16 2.43
366 367 4.774726 ACCGATAGTTGGCATCATCTAGAT 59.225 41.667 0.00 0.00 37.48 1.98
383 384 9.447157 TCATCTAGATGAGTATATGTGTGAGAG 57.553 37.037 27.93 0.03 42.42 3.20
384 385 9.230122 CATCTAGATGAGTATATGTGTGAGAGT 57.770 37.037 25.78 0.00 41.20 3.24
404 405 9.098355 TGAGAGTAATTGAAATATTTCTCACCG 57.902 33.333 24.77 0.00 36.02 4.94
405 406 9.314321 GAGAGTAATTGAAATATTTCTCACCGA 57.686 33.333 24.77 4.90 35.55 4.69
406 407 9.319143 AGAGTAATTGAAATATTTCTCACCGAG 57.681 33.333 24.77 0.00 35.55 4.63
407 408 7.920738 AGTAATTGAAATATTTCTCACCGAGC 58.079 34.615 24.77 10.46 38.02 5.03
408 409 4.857871 TTGAAATATTTCTCACCGAGCG 57.142 40.909 24.77 0.00 38.02 5.03
409 410 3.857052 TGAAATATTTCTCACCGAGCGT 58.143 40.909 24.77 0.00 38.02 5.07
410 411 3.616821 TGAAATATTTCTCACCGAGCGTG 59.383 43.478 24.77 0.00 38.19 5.34
417 418 3.713936 TCACCGAGCGTGATGTAAG 57.286 52.632 0.00 0.00 46.80 2.34
418 419 0.457853 TCACCGAGCGTGATGTAAGC 60.458 55.000 0.00 0.00 46.80 3.09
419 420 0.458543 CACCGAGCGTGATGTAAGCT 60.459 55.000 0.00 0.00 46.20 3.74
420 421 0.246635 ACCGAGCGTGATGTAAGCTT 59.753 50.000 3.48 3.48 44.36 3.74
421 422 0.647410 CCGAGCGTGATGTAAGCTTG 59.353 55.000 9.86 0.00 44.36 4.01
422 423 0.025513 CGAGCGTGATGTAAGCTTGC 59.974 55.000 9.86 8.72 44.36 4.01
423 424 0.025513 GAGCGTGATGTAAGCTTGCG 59.974 55.000 9.86 5.26 44.36 4.85
424 425 0.389817 AGCGTGATGTAAGCTTGCGA 60.390 50.000 9.86 0.00 41.52 5.10
425 426 0.652592 GCGTGATGTAAGCTTGCGAT 59.347 50.000 9.86 4.24 0.00 4.58
426 427 1.593070 GCGTGATGTAAGCTTGCGATG 60.593 52.381 9.86 2.74 0.00 3.84
427 428 1.004610 CGTGATGTAAGCTTGCGATGG 60.005 52.381 9.86 0.00 0.00 3.51
428 429 2.009774 GTGATGTAAGCTTGCGATGGT 58.990 47.619 9.86 0.00 0.00 3.55
429 430 2.420022 GTGATGTAAGCTTGCGATGGTT 59.580 45.455 9.86 0.00 0.00 3.67
430 431 3.081061 TGATGTAAGCTTGCGATGGTTT 58.919 40.909 9.86 0.00 0.00 3.27
431 432 2.987413 TGTAAGCTTGCGATGGTTTG 57.013 45.000 9.86 0.00 0.00 2.93
432 433 2.226330 TGTAAGCTTGCGATGGTTTGT 58.774 42.857 9.86 0.00 0.00 2.83
433 434 2.621055 TGTAAGCTTGCGATGGTTTGTT 59.379 40.909 9.86 0.00 0.00 2.83
434 435 2.888834 AAGCTTGCGATGGTTTGTTT 57.111 40.000 0.00 0.00 0.00 2.83
435 436 4.276183 TGTAAGCTTGCGATGGTTTGTTTA 59.724 37.500 9.86 0.00 0.00 2.01
436 437 3.559238 AGCTTGCGATGGTTTGTTTAG 57.441 42.857 0.00 0.00 0.00 1.85
437 438 3.146066 AGCTTGCGATGGTTTGTTTAGA 58.854 40.909 0.00 0.00 0.00 2.10
438 439 3.058224 AGCTTGCGATGGTTTGTTTAGAC 60.058 43.478 0.00 0.00 0.00 2.59
439 440 3.821841 CTTGCGATGGTTTGTTTAGACC 58.178 45.455 0.00 0.00 36.45 3.85
448 449 5.441500 TGGTTTGTTTAGACCAATCTGACA 58.558 37.500 0.00 0.00 42.68 3.58
449 450 6.068010 TGGTTTGTTTAGACCAATCTGACAT 58.932 36.000 0.00 0.00 42.68 3.06
450 451 7.227873 TGGTTTGTTTAGACCAATCTGACATA 58.772 34.615 0.00 0.00 42.68 2.29
451 452 7.721842 TGGTTTGTTTAGACCAATCTGACATAA 59.278 33.333 0.00 0.00 42.68 1.90
452 453 8.739972 GGTTTGTTTAGACCAATCTGACATAAT 58.260 33.333 0.00 0.00 36.29 1.28
455 456 9.513906 TTGTTTAGACCAATCTGACATAATTCA 57.486 29.630 0.00 0.00 36.29 2.57
456 457 9.685276 TGTTTAGACCAATCTGACATAATTCAT 57.315 29.630 0.00 0.00 36.29 2.57
460 461 8.674263 AGACCAATCTGACATAATTCATTCTC 57.326 34.615 0.00 0.00 32.29 2.87
461 462 7.718753 AGACCAATCTGACATAATTCATTCTCC 59.281 37.037 0.00 0.00 32.29 3.71
462 463 7.348815 ACCAATCTGACATAATTCATTCTCCA 58.651 34.615 0.00 0.00 0.00 3.86
463 464 8.003044 ACCAATCTGACATAATTCATTCTCCAT 58.997 33.333 0.00 0.00 0.00 3.41
464 465 8.297426 CCAATCTGACATAATTCATTCTCCATG 58.703 37.037 0.00 0.00 0.00 3.66
465 466 9.063615 CAATCTGACATAATTCATTCTCCATGA 57.936 33.333 0.00 0.00 40.43 3.07
466 467 9.809395 AATCTGACATAATTCATTCTCCATGAT 57.191 29.630 0.00 0.00 41.82 2.45
467 468 8.617290 TCTGACATAATTCATTCTCCATGATG 57.383 34.615 0.00 0.00 41.82 3.07
468 469 7.174426 TCTGACATAATTCATTCTCCATGATGC 59.826 37.037 0.00 0.00 41.82 3.91
469 470 6.773685 TGACATAATTCATTCTCCATGATGCA 59.226 34.615 0.00 0.00 41.82 3.96
470 471 6.978338 ACATAATTCATTCTCCATGATGCAC 58.022 36.000 0.00 0.00 41.82 4.57
471 472 4.563337 AATTCATTCTCCATGATGCACG 57.437 40.909 0.00 0.00 41.82 5.34
472 473 1.957668 TCATTCTCCATGATGCACGG 58.042 50.000 0.00 0.00 36.94 4.94
473 474 1.210234 TCATTCTCCATGATGCACGGT 59.790 47.619 0.00 0.00 36.94 4.83
474 475 2.019249 CATTCTCCATGATGCACGGTT 58.981 47.619 0.00 0.00 34.31 4.44
475 476 1.737838 TTCTCCATGATGCACGGTTC 58.262 50.000 0.00 0.00 0.00 3.62
476 477 0.612744 TCTCCATGATGCACGGTTCA 59.387 50.000 0.00 0.00 0.00 3.18
477 478 1.003003 TCTCCATGATGCACGGTTCAA 59.997 47.619 0.00 0.00 0.00 2.69
478 479 1.399440 CTCCATGATGCACGGTTCAAG 59.601 52.381 0.00 0.00 0.00 3.02
479 480 1.167851 CCATGATGCACGGTTCAAGT 58.832 50.000 0.00 0.00 0.00 3.16
480 481 1.541147 CCATGATGCACGGTTCAAGTT 59.459 47.619 0.00 0.00 0.00 2.66
481 482 2.746904 CCATGATGCACGGTTCAAGTTA 59.253 45.455 0.00 0.00 0.00 2.24
482 483 3.378112 CCATGATGCACGGTTCAAGTTAT 59.622 43.478 0.00 0.00 0.00 1.89
483 484 4.142403 CCATGATGCACGGTTCAAGTTATT 60.142 41.667 0.00 0.00 0.00 1.40
484 485 4.678509 TGATGCACGGTTCAAGTTATTC 57.321 40.909 0.00 0.00 0.00 1.75
485 486 4.323417 TGATGCACGGTTCAAGTTATTCT 58.677 39.130 0.00 0.00 0.00 2.40
486 487 4.759693 TGATGCACGGTTCAAGTTATTCTT 59.240 37.500 0.00 0.00 36.75 2.52
487 488 5.240623 TGATGCACGGTTCAAGTTATTCTTT 59.759 36.000 0.00 0.00 33.63 2.52
488 489 4.854399 TGCACGGTTCAAGTTATTCTTTG 58.146 39.130 0.00 0.00 33.63 2.77
489 490 4.336993 TGCACGGTTCAAGTTATTCTTTGT 59.663 37.500 0.00 0.00 33.63 2.83
490 491 4.909880 GCACGGTTCAAGTTATTCTTTGTC 59.090 41.667 0.00 0.00 33.63 3.18
491 492 5.277828 GCACGGTTCAAGTTATTCTTTGTCT 60.278 40.000 0.00 0.00 33.63 3.41
492 493 6.725246 CACGGTTCAAGTTATTCTTTGTCTT 58.275 36.000 0.00 0.00 33.63 3.01
493 494 7.519328 GCACGGTTCAAGTTATTCTTTGTCTTA 60.519 37.037 0.00 0.00 33.63 2.10
494 495 8.339714 CACGGTTCAAGTTATTCTTTGTCTTAA 58.660 33.333 0.00 0.00 33.63 1.85
495 496 9.063615 ACGGTTCAAGTTATTCTTTGTCTTAAT 57.936 29.630 0.00 0.00 33.63 1.40
496 497 9.543018 CGGTTCAAGTTATTCTTTGTCTTAATC 57.457 33.333 0.00 0.00 33.63 1.75
527 528 6.414408 GTCATCATGACAGTTTAGTTGGAG 57.586 41.667 13.26 0.00 46.22 3.86
528 529 4.937620 TCATCATGACAGTTTAGTTGGAGC 59.062 41.667 0.00 0.00 0.00 4.70
529 530 4.350368 TCATGACAGTTTAGTTGGAGCA 57.650 40.909 0.00 0.00 0.00 4.26
530 531 4.713553 TCATGACAGTTTAGTTGGAGCAA 58.286 39.130 0.00 0.00 0.00 3.91
531 532 4.756642 TCATGACAGTTTAGTTGGAGCAAG 59.243 41.667 0.00 0.00 0.00 4.01
532 533 4.415881 TGACAGTTTAGTTGGAGCAAGA 57.584 40.909 0.00 0.00 0.00 3.02
533 534 4.776349 TGACAGTTTAGTTGGAGCAAGAA 58.224 39.130 0.00 0.00 0.00 2.52
534 535 5.376625 TGACAGTTTAGTTGGAGCAAGAAT 58.623 37.500 0.00 0.00 0.00 2.40
535 536 5.827797 TGACAGTTTAGTTGGAGCAAGAATT 59.172 36.000 0.00 0.00 0.00 2.17
536 537 6.321181 TGACAGTTTAGTTGGAGCAAGAATTT 59.679 34.615 0.00 0.00 0.00 1.82
537 538 6.507023 ACAGTTTAGTTGGAGCAAGAATTTG 58.493 36.000 0.00 0.00 37.36 2.32
538 539 5.922544 CAGTTTAGTTGGAGCAAGAATTTGG 59.077 40.000 0.00 0.00 34.79 3.28
539 540 4.519540 TTAGTTGGAGCAAGAATTTGGC 57.480 40.909 0.00 0.00 34.79 4.52
540 541 2.318908 AGTTGGAGCAAGAATTTGGCA 58.681 42.857 0.00 0.00 34.79 4.92
541 542 2.699846 AGTTGGAGCAAGAATTTGGCAA 59.300 40.909 0.00 0.00 34.79 4.52
542 543 2.802247 GTTGGAGCAAGAATTTGGCAAC 59.198 45.455 0.00 0.00 34.79 4.17
543 544 1.000385 TGGAGCAAGAATTTGGCAACG 60.000 47.619 0.00 0.00 42.51 4.10
544 545 1.269448 GGAGCAAGAATTTGGCAACGA 59.731 47.619 0.00 0.00 42.51 3.85
545 546 2.589014 GAGCAAGAATTTGGCAACGAG 58.411 47.619 0.00 0.00 42.51 4.18
546 547 1.956477 AGCAAGAATTTGGCAACGAGT 59.044 42.857 0.00 0.00 42.51 4.18
547 548 2.030805 AGCAAGAATTTGGCAACGAGTC 60.031 45.455 0.00 0.00 42.51 3.36
548 549 2.287547 GCAAGAATTTGGCAACGAGTCA 60.288 45.455 0.00 0.00 42.51 3.41
549 550 3.795150 GCAAGAATTTGGCAACGAGTCAA 60.795 43.478 0.00 0.00 40.78 3.18
565 566 4.001618 AGTCAAAACTCTCTCTTCAGCC 57.998 45.455 0.00 0.00 0.00 4.85
566 567 3.645687 AGTCAAAACTCTCTCTTCAGCCT 59.354 43.478 0.00 0.00 0.00 4.58
567 568 4.102367 AGTCAAAACTCTCTCTTCAGCCTT 59.898 41.667 0.00 0.00 0.00 4.35
568 569 4.819088 GTCAAAACTCTCTCTTCAGCCTTT 59.181 41.667 0.00 0.00 0.00 3.11
569 570 5.049749 GTCAAAACTCTCTCTTCAGCCTTTC 60.050 44.000 0.00 0.00 0.00 2.62
570 571 4.972751 AAACTCTCTCTTCAGCCTTTCT 57.027 40.909 0.00 0.00 0.00 2.52
571 572 4.972751 AACTCTCTCTTCAGCCTTTCTT 57.027 40.909 0.00 0.00 0.00 2.52
572 573 4.270245 ACTCTCTCTTCAGCCTTTCTTG 57.730 45.455 0.00 0.00 0.00 3.02
573 574 3.900601 ACTCTCTCTTCAGCCTTTCTTGA 59.099 43.478 0.00 0.00 0.00 3.02
574 575 4.346418 ACTCTCTCTTCAGCCTTTCTTGAA 59.654 41.667 0.00 0.00 0.00 2.69
575 576 5.163258 ACTCTCTCTTCAGCCTTTCTTGAAA 60.163 40.000 0.00 0.00 0.00 2.69
576 577 5.059833 TCTCTCTTCAGCCTTTCTTGAAAC 58.940 41.667 0.00 0.00 0.00 2.78
577 578 3.809832 TCTCTTCAGCCTTTCTTGAAACG 59.190 43.478 0.00 0.00 0.00 3.60
578 579 3.541632 TCTTCAGCCTTTCTTGAAACGT 58.458 40.909 0.00 0.00 0.00 3.99
579 580 4.699637 TCTTCAGCCTTTCTTGAAACGTA 58.300 39.130 0.00 0.00 0.00 3.57
580 581 4.750098 TCTTCAGCCTTTCTTGAAACGTAG 59.250 41.667 0.00 0.00 0.00 3.51
581 582 4.330944 TCAGCCTTTCTTGAAACGTAGA 57.669 40.909 0.00 0.00 0.00 2.59
582 583 4.307432 TCAGCCTTTCTTGAAACGTAGAG 58.693 43.478 0.00 0.00 0.00 2.43
583 584 3.067833 AGCCTTTCTTGAAACGTAGAGC 58.932 45.455 0.00 0.00 0.00 4.09
585 586 2.159827 CCTTTCTTGAAACGTAGAGCGC 60.160 50.000 0.00 0.00 46.11 5.92
586 587 2.433868 TTCTTGAAACGTAGAGCGCT 57.566 45.000 11.27 11.27 46.11 5.92
587 588 2.433868 TCTTGAAACGTAGAGCGCTT 57.566 45.000 13.26 4.13 46.11 4.68
588 589 2.750948 TCTTGAAACGTAGAGCGCTTT 58.249 42.857 13.26 9.07 46.11 3.51
589 590 3.128349 TCTTGAAACGTAGAGCGCTTTT 58.872 40.909 13.26 7.69 46.11 2.27
590 591 3.558418 TCTTGAAACGTAGAGCGCTTTTT 59.442 39.130 13.26 6.49 46.11 1.94
591 592 3.247563 TGAAACGTAGAGCGCTTTTTG 57.752 42.857 13.26 4.29 46.11 2.44
592 593 2.032377 TGAAACGTAGAGCGCTTTTTGG 60.032 45.455 13.26 2.87 46.11 3.28
593 594 0.237498 AACGTAGAGCGCTTTTTGGC 59.763 50.000 13.26 0.00 46.11 4.52
594 595 1.134694 CGTAGAGCGCTTTTTGGCC 59.865 57.895 13.26 0.00 0.00 5.36
595 596 1.506718 GTAGAGCGCTTTTTGGCCC 59.493 57.895 13.26 0.00 0.00 5.80
596 597 1.074072 TAGAGCGCTTTTTGGCCCA 59.926 52.632 13.26 0.00 0.00 5.36
597 598 0.323360 TAGAGCGCTTTTTGGCCCAT 60.323 50.000 13.26 0.00 0.00 4.00
598 599 1.446618 GAGCGCTTTTTGGCCCATG 60.447 57.895 13.26 0.00 0.00 3.66
599 600 3.120385 GCGCTTTTTGGCCCATGC 61.120 61.111 0.00 0.00 0.00 4.06
600 601 2.810458 CGCTTTTTGGCCCATGCG 60.810 61.111 0.00 6.42 38.85 4.73
601 602 2.656055 GCTTTTTGGCCCATGCGA 59.344 55.556 0.00 0.00 38.85 5.10
602 603 1.737735 GCTTTTTGGCCCATGCGAC 60.738 57.895 0.00 0.00 38.85 5.19
603 604 1.444212 CTTTTTGGCCCATGCGACG 60.444 57.895 0.00 0.00 38.85 5.12
604 605 1.861542 CTTTTTGGCCCATGCGACGA 61.862 55.000 0.00 0.00 38.85 4.20
605 606 1.456196 TTTTTGGCCCATGCGACGAA 61.456 50.000 0.00 0.00 38.85 3.85
606 607 1.861542 TTTTGGCCCATGCGACGAAG 61.862 55.000 0.00 0.00 38.85 3.79
607 608 2.739849 TTTGGCCCATGCGACGAAGA 62.740 55.000 0.00 0.00 38.85 2.87
608 609 2.892425 GGCCCATGCGACGAAGAG 60.892 66.667 0.00 0.00 38.85 2.85
609 610 2.125512 GCCCATGCGACGAAGAGT 60.126 61.111 0.00 0.00 0.00 3.24
610 611 2.167861 GCCCATGCGACGAAGAGTC 61.168 63.158 0.00 0.00 46.16 3.36
623 624 1.996798 AAGAGTCACTCTTCGGTCCA 58.003 50.000 14.79 0.00 46.42 4.02
624 625 1.540267 AGAGTCACTCTTCGGTCCAG 58.460 55.000 0.00 0.00 37.60 3.86
625 626 0.528470 GAGTCACTCTTCGGTCCAGG 59.472 60.000 0.00 0.00 0.00 4.45
626 627 0.900647 AGTCACTCTTCGGTCCAGGG 60.901 60.000 0.00 0.00 0.00 4.45
627 628 1.609501 TCACTCTTCGGTCCAGGGG 60.610 63.158 0.00 0.00 0.00 4.79
628 629 1.609501 CACTCTTCGGTCCAGGGGA 60.610 63.158 0.00 0.00 0.00 4.81
629 630 1.305381 ACTCTTCGGTCCAGGGGAG 60.305 63.158 0.00 0.00 29.39 4.30
630 631 2.038975 TCTTCGGTCCAGGGGAGG 59.961 66.667 0.00 0.00 29.39 4.30
631 632 2.038975 CTTCGGTCCAGGGGAGGA 59.961 66.667 0.00 0.00 34.64 3.71
632 633 1.383248 CTTCGGTCCAGGGGAGGAT 60.383 63.158 0.00 0.00 40.42 3.24
633 634 0.105658 CTTCGGTCCAGGGGAGGATA 60.106 60.000 0.00 0.00 40.42 2.59
634 635 0.105658 TTCGGTCCAGGGGAGGATAG 60.106 60.000 0.00 0.00 40.42 2.08
635 636 1.233369 CGGTCCAGGGGAGGATAGT 59.767 63.158 0.00 0.00 40.42 2.12
636 637 1.115930 CGGTCCAGGGGAGGATAGTG 61.116 65.000 0.00 0.00 40.42 2.74
637 638 0.764752 GGTCCAGGGGAGGATAGTGG 60.765 65.000 0.00 0.00 40.42 4.00
638 639 0.764752 GTCCAGGGGAGGATAGTGGG 60.765 65.000 0.00 0.00 40.42 4.61
639 640 0.934302 TCCAGGGGAGGATAGTGGGA 60.934 60.000 0.00 0.00 31.23 4.37
640 641 0.194587 CCAGGGGAGGATAGTGGGAT 59.805 60.000 0.00 0.00 0.00 3.85
641 642 1.416608 CCAGGGGAGGATAGTGGGATT 60.417 57.143 0.00 0.00 0.00 3.01
642 643 2.158004 CCAGGGGAGGATAGTGGGATTA 60.158 54.545 0.00 0.00 0.00 1.75
643 644 3.506787 CCAGGGGAGGATAGTGGGATTAT 60.507 52.174 0.00 0.00 0.00 1.28
644 645 4.265307 CCAGGGGAGGATAGTGGGATTATA 60.265 50.000 0.00 0.00 0.00 0.98
645 646 5.542743 CAGGGGAGGATAGTGGGATTATAT 58.457 45.833 0.00 0.00 0.00 0.86
646 647 6.356611 CCAGGGGAGGATAGTGGGATTATATA 60.357 46.154 0.00 0.00 0.00 0.86
647 648 7.316841 CAGGGGAGGATAGTGGGATTATATAT 58.683 42.308 0.00 0.00 0.00 0.86
648 649 8.465146 CAGGGGAGGATAGTGGGATTATATATA 58.535 40.741 0.00 0.00 0.00 0.86
649 650 9.048554 AGGGGAGGATAGTGGGATTATATATAA 57.951 37.037 7.62 7.62 0.00 0.98
650 651 9.102453 GGGGAGGATAGTGGGATTATATATAAC 57.898 40.741 7.34 2.69 0.00 1.89
651 652 9.900112 GGGAGGATAGTGGGATTATATATAACT 57.100 37.037 7.34 3.69 0.00 2.24
720 721 6.481954 AAAAATTCTAATCTCAACGCGACT 57.518 33.333 15.93 0.00 0.00 4.18
721 722 7.591006 AAAAATTCTAATCTCAACGCGACTA 57.409 32.000 15.93 0.00 0.00 2.59
722 723 7.591006 AAAATTCTAATCTCAACGCGACTAA 57.409 32.000 15.93 0.00 0.00 2.24
723 724 6.814076 AATTCTAATCTCAACGCGACTAAG 57.186 37.500 15.93 4.54 0.00 2.18
724 725 5.556355 TTCTAATCTCAACGCGACTAAGA 57.444 39.130 15.93 10.43 0.00 2.10
725 726 5.556355 TCTAATCTCAACGCGACTAAGAA 57.444 39.130 15.93 0.00 0.00 2.52
726 727 5.946298 TCTAATCTCAACGCGACTAAGAAA 58.054 37.500 15.93 2.48 0.00 2.52
727 728 6.384224 TCTAATCTCAACGCGACTAAGAAAA 58.616 36.000 15.93 2.15 0.00 2.29
728 729 7.033791 TCTAATCTCAACGCGACTAAGAAAAT 58.966 34.615 15.93 4.05 0.00 1.82
729 730 8.186163 TCTAATCTCAACGCGACTAAGAAAATA 58.814 33.333 15.93 4.91 0.00 1.40
730 731 7.591006 AATCTCAACGCGACTAAGAAAATAA 57.409 32.000 15.93 0.00 0.00 1.40
731 732 6.385537 TCTCAACGCGACTAAGAAAATAAC 57.614 37.500 15.93 0.00 0.00 1.89
732 733 6.154445 TCTCAACGCGACTAAGAAAATAACT 58.846 36.000 15.93 0.00 0.00 2.24
733 734 7.307694 TCTCAACGCGACTAAGAAAATAACTA 58.692 34.615 15.93 0.00 0.00 2.24
734 735 7.809331 TCTCAACGCGACTAAGAAAATAACTAA 59.191 33.333 15.93 0.00 0.00 2.24
735 736 8.470040 TCAACGCGACTAAGAAAATAACTAAT 57.530 30.769 15.93 0.00 0.00 1.73
736 737 8.589629 TCAACGCGACTAAGAAAATAACTAATC 58.410 33.333 15.93 0.00 0.00 1.75
737 738 8.592998 CAACGCGACTAAGAAAATAACTAATCT 58.407 33.333 15.93 0.00 0.00 2.40
738 739 8.337741 ACGCGACTAAGAAAATAACTAATCTC 57.662 34.615 15.93 0.00 0.00 2.75
739 740 8.189460 ACGCGACTAAGAAAATAACTAATCTCT 58.811 33.333 15.93 0.00 0.00 3.10
740 741 8.683774 CGCGACTAAGAAAATAACTAATCTCTC 58.316 37.037 0.00 0.00 0.00 3.20
741 742 9.738832 GCGACTAAGAAAATAACTAATCTCTCT 57.261 33.333 0.00 0.00 0.00 3.10
863 864 4.450757 CCATCCCGAAACAAAAATCCAAAC 59.549 41.667 0.00 0.00 0.00 2.93
1547 1549 1.225373 TGCCCTGAAGCCCTAATGAT 58.775 50.000 0.00 0.00 0.00 2.45
2175 2320 0.320160 GCCTGTCGTTTTAGGACGGT 60.320 55.000 0.00 0.00 42.98 4.83
2414 2559 4.843220 AAACGTATATACTCCCTCCGTG 57.157 45.455 11.05 0.00 0.00 4.94
3088 3269 1.871039 GCGGTGCTTTGAAGTAAGACA 59.129 47.619 0.00 0.00 0.00 3.41
3089 3270 2.484264 GCGGTGCTTTGAAGTAAGACAT 59.516 45.455 0.00 0.00 0.00 3.06
3397 3578 3.134458 GGTAGCATGTCTAGGCATGTTC 58.866 50.000 32.06 22.67 45.75 3.18
3570 3752 4.142752 CCACTGTGCATTATGAAGTGACTG 60.143 45.833 18.28 4.95 40.54 3.51
3868 4133 8.814931 AGCTATGATAAAGTCTTGCATATCTCT 58.185 33.333 4.79 0.00 0.00 3.10
4160 4431 9.020731 GGTATTTCTCTCACTTGGGAATTTTTA 57.979 33.333 0.00 0.00 0.00 1.52
4361 5202 3.411446 TCCACTCAGTTTGTATTGCCTG 58.589 45.455 0.00 0.00 0.00 4.85
4567 5408 5.723492 TTTGAAGTGAGACATCATATGCG 57.277 39.130 0.00 0.00 37.87 4.73
4589 5430 8.378172 TGCGAATTTAAATCCTATCAAGGTAG 57.622 34.615 0.10 0.00 44.09 3.18
4635 5581 1.645919 AGGCCATGGGTCTGGTATTTT 59.354 47.619 15.13 0.00 35.70 1.82
5169 6118 4.319177 TCAGTTTGGTTTGGTTTTGTTGG 58.681 39.130 0.00 0.00 0.00 3.77
5172 6121 0.108138 TGGTTTGGTTTTGTTGGGCG 60.108 50.000 0.00 0.00 0.00 6.13
5202 6252 3.756434 CCGAAGGCCTTTGAAACTGATAA 59.244 43.478 31.24 0.00 46.14 1.75
5204 6254 4.215399 CGAAGGCCTTTGAAACTGATAACA 59.785 41.667 26.53 0.00 0.00 2.41
5206 6256 5.453567 AGGCCTTTGAAACTGATAACAAC 57.546 39.130 0.00 0.00 0.00 3.32
5275 6326 8.514136 TTTCTGTAATTTTGAATGTTAAGCGG 57.486 30.769 0.00 0.00 0.00 5.52
5331 6382 8.572855 AAGCTAATTTCTCTAATTGTGAAGCT 57.427 30.769 0.00 0.00 42.25 3.74
5332 6383 9.672673 AAGCTAATTTCTCTAATTGTGAAGCTA 57.327 29.630 0.00 0.00 40.77 3.32
5333 6384 9.672673 AGCTAATTTCTCTAATTGTGAAGCTAA 57.327 29.630 0.00 0.00 40.27 3.09
5340 6391 9.950496 TTCTCTAATTGTGAAGCTAATTTCTCT 57.050 29.630 0.00 0.00 0.00 3.10
5466 6517 7.807198 TGATAGTGGCCTAACATATTTTGGTA 58.193 34.615 3.32 0.00 0.00 3.25
5490 6541 1.621317 TCGTCACCTGCACCTCAAATA 59.379 47.619 0.00 0.00 0.00 1.40
5503 6554 6.095860 TGCACCTCAAATATCTCATTTTCTGG 59.904 38.462 0.00 0.00 0.00 3.86
5505 6556 6.320672 CACCTCAAATATCTCATTTTCTGGCT 59.679 38.462 0.00 0.00 0.00 4.75
5532 6593 4.141846 TGACCCTGAGCTGATAAGCTTAAG 60.142 45.833 10.85 7.34 46.36 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.828939 ACGGGTAAATCTATCGGACATACA 59.171 41.667 0.00 0.00 0.00 2.29
31 32 1.979308 TCTCCAATCCACAACGGGTAA 59.021 47.619 0.00 0.00 34.36 2.85
121 122 4.201891 GGTAGCATGCAGATCTTTGTCAAG 60.202 45.833 21.98 0.00 0.00 3.02
122 123 3.691118 GGTAGCATGCAGATCTTTGTCAA 59.309 43.478 21.98 0.00 0.00 3.18
123 124 3.273434 GGTAGCATGCAGATCTTTGTCA 58.727 45.455 21.98 0.00 0.00 3.58
124 125 3.064545 GTGGTAGCATGCAGATCTTTGTC 59.935 47.826 21.98 0.00 0.00 3.18
126 127 3.011818 TGTGGTAGCATGCAGATCTTTG 58.988 45.455 21.98 0.00 0.00 2.77
127 128 3.054875 TCTGTGGTAGCATGCAGATCTTT 60.055 43.478 21.98 0.00 33.62 2.52
128 129 2.502947 TCTGTGGTAGCATGCAGATCTT 59.497 45.455 21.98 0.00 33.62 2.40
129 130 2.113807 TCTGTGGTAGCATGCAGATCT 58.886 47.619 21.98 0.16 33.62 2.75
131 132 1.836166 AGTCTGTGGTAGCATGCAGAT 59.164 47.619 21.98 1.04 39.70 2.90
133 134 1.649664 GAGTCTGTGGTAGCATGCAG 58.350 55.000 21.98 7.33 0.00 4.41
134 135 0.250234 GGAGTCTGTGGTAGCATGCA 59.750 55.000 21.98 2.77 0.00 3.96
136 137 2.169144 TCATGGAGTCTGTGGTAGCATG 59.831 50.000 0.00 0.00 0.00 4.06
138 139 1.937191 TCATGGAGTCTGTGGTAGCA 58.063 50.000 0.00 0.00 0.00 3.49
139 140 2.432146 TCATCATGGAGTCTGTGGTAGC 59.568 50.000 0.00 0.00 0.00 3.58
140 141 4.629092 CATCATCATGGAGTCTGTGGTAG 58.371 47.826 0.00 0.00 0.00 3.18
142 143 3.555527 CATCATCATGGAGTCTGTGGT 57.444 47.619 0.00 0.00 0.00 4.16
153 154 3.697542 TCTTTGTCAAGGCCATCATCATG 59.302 43.478 5.01 0.00 0.00 3.07
154 155 3.972133 TCTTTGTCAAGGCCATCATCAT 58.028 40.909 5.01 0.00 0.00 2.45
156 157 4.036498 CAGATCTTTGTCAAGGCCATCATC 59.964 45.833 5.01 0.00 0.00 2.92
157 158 3.952323 CAGATCTTTGTCAAGGCCATCAT 59.048 43.478 5.01 0.00 0.00 2.45
158 159 3.349927 CAGATCTTTGTCAAGGCCATCA 58.650 45.455 5.01 0.00 0.00 3.07
159 160 2.098770 GCAGATCTTTGTCAAGGCCATC 59.901 50.000 5.01 0.00 0.00 3.51
163 164 2.734492 GCATGCAGATCTTTGTCAAGGC 60.734 50.000 14.21 0.00 0.00 4.35
165 166 5.296035 TGATAGCATGCAGATCTTTGTCAAG 59.704 40.000 24.68 0.00 0.00 3.02
166 167 5.065602 GTGATAGCATGCAGATCTTTGTCAA 59.934 40.000 24.68 7.82 0.00 3.18
167 168 4.573607 GTGATAGCATGCAGATCTTTGTCA 59.426 41.667 24.68 13.02 0.00 3.58
168 169 4.318618 CGTGATAGCATGCAGATCTTTGTC 60.319 45.833 24.68 10.98 0.00 3.18
169 170 3.558829 CGTGATAGCATGCAGATCTTTGT 59.441 43.478 24.68 5.12 0.00 2.83
170 171 3.059120 CCGTGATAGCATGCAGATCTTTG 60.059 47.826 24.68 16.83 0.00 2.77
172 173 2.366590 TCCGTGATAGCATGCAGATCTT 59.633 45.455 24.68 7.06 0.00 2.40
174 175 2.064762 GTCCGTGATAGCATGCAGATC 58.935 52.381 21.98 20.92 0.00 2.75
175 176 1.690893 AGTCCGTGATAGCATGCAGAT 59.309 47.619 21.98 12.81 0.00 2.90
176 177 1.067669 GAGTCCGTGATAGCATGCAGA 59.932 52.381 21.98 7.72 0.00 4.26
177 178 1.495878 GAGTCCGTGATAGCATGCAG 58.504 55.000 21.98 3.52 0.00 4.41
178 179 0.104855 GGAGTCCGTGATAGCATGCA 59.895 55.000 21.98 6.36 0.00 3.96
179 180 0.104855 TGGAGTCCGTGATAGCATGC 59.895 55.000 10.51 10.51 0.00 4.06
180 181 2.410939 CATGGAGTCCGTGATAGCATG 58.589 52.381 24.90 6.51 42.73 4.06
181 182 1.345741 CCATGGAGTCCGTGATAGCAT 59.654 52.381 29.69 0.58 42.73 3.79
182 183 0.752658 CCATGGAGTCCGTGATAGCA 59.247 55.000 29.69 0.00 42.73 3.49
183 184 0.753262 ACCATGGAGTCCGTGATAGC 59.247 55.000 29.69 0.00 42.73 2.97
184 185 2.031870 TCACCATGGAGTCCGTGATAG 58.968 52.381 29.69 18.72 42.73 2.08
185 186 2.153034 TCACCATGGAGTCCGTGATA 57.847 50.000 29.69 13.30 42.73 2.15
186 187 1.139654 CATCACCATGGAGTCCGTGAT 59.860 52.381 29.69 24.17 44.67 3.06
188 189 3.070076 CATCACCATGGAGTCCGTG 57.930 57.895 22.66 22.66 40.02 4.94
197 198 3.763360 TCTTTGTTAAGGCCATCACCATG 59.237 43.478 5.01 0.00 32.02 3.66
198 199 4.046286 TCTTTGTTAAGGCCATCACCAT 57.954 40.909 5.01 0.00 32.02 3.55
199 200 3.517296 TCTTTGTTAAGGCCATCACCA 57.483 42.857 5.01 0.00 32.02 4.17
200 201 4.096984 CAGATCTTTGTTAAGGCCATCACC 59.903 45.833 5.01 0.00 32.02 4.02
201 202 4.439289 GCAGATCTTTGTTAAGGCCATCAC 60.439 45.833 5.01 0.00 32.02 3.06
202 203 3.696051 GCAGATCTTTGTTAAGGCCATCA 59.304 43.478 5.01 0.00 32.02 3.07
203 204 3.696051 TGCAGATCTTTGTTAAGGCCATC 59.304 43.478 5.01 0.00 32.02 3.51
204 205 3.700538 TGCAGATCTTTGTTAAGGCCAT 58.299 40.909 5.01 0.00 32.02 4.40
205 206 3.153369 TGCAGATCTTTGTTAAGGCCA 57.847 42.857 5.01 0.00 32.02 5.36
206 207 4.884164 AGTATGCAGATCTTTGTTAAGGCC 59.116 41.667 0.00 0.00 32.02 5.19
207 208 6.763610 AGTAGTATGCAGATCTTTGTTAAGGC 59.236 38.462 0.00 0.00 32.02 4.35
208 209 9.250624 GTAGTAGTATGCAGATCTTTGTTAAGG 57.749 37.037 0.00 0.00 32.02 2.69
209 210 9.803315 TGTAGTAGTATGCAGATCTTTGTTAAG 57.197 33.333 0.00 0.00 0.00 1.85
210 211 9.803315 CTGTAGTAGTATGCAGATCTTTGTTAA 57.197 33.333 0.00 0.00 35.15 2.01
211 212 9.185680 TCTGTAGTAGTATGCAGATCTTTGTTA 57.814 33.333 0.00 0.00 37.06 2.41
212 213 8.067751 TCTGTAGTAGTATGCAGATCTTTGTT 57.932 34.615 0.00 0.00 37.06 2.83
213 214 7.646548 TCTGTAGTAGTATGCAGATCTTTGT 57.353 36.000 0.00 0.00 37.06 2.83
220 221 6.000840 CCTGAGATCTGTAGTAGTATGCAGA 58.999 44.000 0.00 0.00 44.45 4.26
221 222 5.182950 CCCTGAGATCTGTAGTAGTATGCAG 59.817 48.000 0.00 0.00 34.56 4.41
222 223 5.073428 CCCTGAGATCTGTAGTAGTATGCA 58.927 45.833 0.00 0.00 0.00 3.96
223 224 5.317808 TCCCTGAGATCTGTAGTAGTATGC 58.682 45.833 0.00 0.00 0.00 3.14
224 225 6.774673 TCTCCCTGAGATCTGTAGTAGTATG 58.225 44.000 0.00 0.00 33.35 2.39
225 226 7.582909 ATCTCCCTGAGATCTGTAGTAGTAT 57.417 40.000 0.00 0.00 45.03 2.12
227 228 5.922960 ATCTCCCTGAGATCTGTAGTAGT 57.077 43.478 0.00 0.00 45.03 2.73
238 239 6.375455 GCTTTGTCAAAATAATCTCCCTGAGA 59.625 38.462 0.00 0.00 43.20 3.27
239 240 6.558909 GCTTTGTCAAAATAATCTCCCTGAG 58.441 40.000 0.00 0.00 0.00 3.35
240 241 5.123820 CGCTTTGTCAAAATAATCTCCCTGA 59.876 40.000 0.00 0.00 0.00 3.86
241 242 5.106157 ACGCTTTGTCAAAATAATCTCCCTG 60.106 40.000 0.00 0.00 0.00 4.45
242 243 5.010282 ACGCTTTGTCAAAATAATCTCCCT 58.990 37.500 0.00 0.00 0.00 4.20
243 244 5.310720 ACGCTTTGTCAAAATAATCTCCC 57.689 39.130 0.00 0.00 0.00 4.30
244 245 6.305638 GTGAACGCTTTGTCAAAATAATCTCC 59.694 38.462 0.00 0.00 0.00 3.71
245 246 7.078228 AGTGAACGCTTTGTCAAAATAATCTC 58.922 34.615 0.00 0.00 0.00 2.75
246 247 6.970484 AGTGAACGCTTTGTCAAAATAATCT 58.030 32.000 0.00 0.00 0.00 2.40
247 248 7.358352 CCAAGTGAACGCTTTGTCAAAATAATC 60.358 37.037 0.00 0.00 0.00 1.75
248 249 6.420604 CCAAGTGAACGCTTTGTCAAAATAAT 59.579 34.615 0.00 0.00 0.00 1.28
249 250 5.746245 CCAAGTGAACGCTTTGTCAAAATAA 59.254 36.000 0.00 0.00 0.00 1.40
250 251 5.277825 CCAAGTGAACGCTTTGTCAAAATA 58.722 37.500 0.00 0.00 0.00 1.40
251 252 4.111916 CCAAGTGAACGCTTTGTCAAAAT 58.888 39.130 0.00 0.00 0.00 1.82
252 253 3.506810 CCAAGTGAACGCTTTGTCAAAA 58.493 40.909 0.00 0.00 0.00 2.44
253 254 2.733858 GCCAAGTGAACGCTTTGTCAAA 60.734 45.455 0.00 0.00 0.00 2.69
254 255 1.202245 GCCAAGTGAACGCTTTGTCAA 60.202 47.619 0.00 0.00 0.00 3.18
255 256 0.380378 GCCAAGTGAACGCTTTGTCA 59.620 50.000 0.00 0.00 0.00 3.58
256 257 0.657368 CGCCAAGTGAACGCTTTGTC 60.657 55.000 0.00 0.00 0.00 3.18
257 258 1.355210 CGCCAAGTGAACGCTTTGT 59.645 52.632 0.00 0.00 0.00 2.83
258 259 0.657368 GACGCCAAGTGAACGCTTTG 60.657 55.000 0.00 0.00 0.00 2.77
259 260 0.814010 AGACGCCAAGTGAACGCTTT 60.814 50.000 0.00 0.00 0.00 3.51
260 261 0.814010 AAGACGCCAAGTGAACGCTT 60.814 50.000 0.00 0.00 0.00 4.68
261 262 0.814010 AAAGACGCCAAGTGAACGCT 60.814 50.000 0.00 0.00 0.00 5.07
262 263 0.384353 GAAAGACGCCAAGTGAACGC 60.384 55.000 0.00 0.00 0.00 4.84
263 264 0.234884 GGAAAGACGCCAAGTGAACG 59.765 55.000 0.00 0.00 0.00 3.95
264 265 0.591659 GGGAAAGACGCCAAGTGAAC 59.408 55.000 0.00 0.00 0.00 3.18
265 266 0.472471 AGGGAAAGACGCCAAGTGAA 59.528 50.000 0.00 0.00 0.00 3.18
266 267 0.250295 CAGGGAAAGACGCCAAGTGA 60.250 55.000 0.00 0.00 0.00 3.41
267 268 1.237285 CCAGGGAAAGACGCCAAGTG 61.237 60.000 0.00 0.00 0.00 3.16
268 269 1.073199 CCAGGGAAAGACGCCAAGT 59.927 57.895 0.00 0.00 0.00 3.16
269 270 2.335712 GCCAGGGAAAGACGCCAAG 61.336 63.158 0.00 0.00 0.00 3.61
270 271 2.282180 GCCAGGGAAAGACGCCAA 60.282 61.111 0.00 0.00 0.00 4.52
271 272 3.126703 TTGCCAGGGAAAGACGCCA 62.127 57.895 0.00 0.00 0.00 5.69
272 273 2.282180 TTGCCAGGGAAAGACGCC 60.282 61.111 0.00 0.00 0.00 5.68
273 274 0.889186 TTCTTGCCAGGGAAAGACGC 60.889 55.000 8.31 0.00 39.34 5.19
274 275 1.160137 CTTCTTGCCAGGGAAAGACG 58.840 55.000 8.31 3.25 39.34 4.18
275 276 1.539157 CCTTCTTGCCAGGGAAAGAC 58.461 55.000 8.31 0.00 39.34 3.01
276 277 0.251341 GCCTTCTTGCCAGGGAAAGA 60.251 55.000 4.55 4.55 37.97 2.52
277 278 0.251519 AGCCTTCTTGCCAGGGAAAG 60.252 55.000 0.00 0.00 32.08 2.62
278 279 1.072266 TAGCCTTCTTGCCAGGGAAA 58.928 50.000 0.00 0.00 31.20 3.13
279 280 1.298953 ATAGCCTTCTTGCCAGGGAA 58.701 50.000 0.00 0.00 31.20 3.97
280 281 1.064463 CAATAGCCTTCTTGCCAGGGA 60.064 52.381 0.00 0.00 31.20 4.20
281 282 1.341383 ACAATAGCCTTCTTGCCAGGG 60.341 52.381 0.00 0.00 31.20 4.45
282 283 1.747355 CACAATAGCCTTCTTGCCAGG 59.253 52.381 0.00 0.00 34.08 4.45
283 284 1.747355 CCACAATAGCCTTCTTGCCAG 59.253 52.381 0.00 0.00 0.00 4.85
284 285 1.838112 CCACAATAGCCTTCTTGCCA 58.162 50.000 0.00 0.00 0.00 4.92
285 286 0.457443 GCCACAATAGCCTTCTTGCC 59.543 55.000 0.00 0.00 0.00 4.52
286 287 1.403323 GAGCCACAATAGCCTTCTTGC 59.597 52.381 0.00 0.00 0.00 4.01
287 288 1.667724 CGAGCCACAATAGCCTTCTTG 59.332 52.381 0.00 0.00 0.00 3.02
288 289 1.279271 ACGAGCCACAATAGCCTTCTT 59.721 47.619 0.00 0.00 0.00 2.52
289 290 0.905357 ACGAGCCACAATAGCCTTCT 59.095 50.000 0.00 0.00 0.00 2.85
290 291 1.009829 CACGAGCCACAATAGCCTTC 58.990 55.000 0.00 0.00 0.00 3.46
291 292 0.324943 ACACGAGCCACAATAGCCTT 59.675 50.000 0.00 0.00 0.00 4.35
292 293 1.134788 GTACACGAGCCACAATAGCCT 60.135 52.381 0.00 0.00 0.00 4.58
293 294 1.287425 GTACACGAGCCACAATAGCC 58.713 55.000 0.00 0.00 0.00 3.93
294 295 1.927174 CTGTACACGAGCCACAATAGC 59.073 52.381 0.00 0.00 0.00 2.97
295 296 3.232213 ACTGTACACGAGCCACAATAG 57.768 47.619 0.00 0.00 0.00 1.73
296 297 3.322369 CAACTGTACACGAGCCACAATA 58.678 45.455 0.00 0.00 0.00 1.90
297 298 2.143122 CAACTGTACACGAGCCACAAT 58.857 47.619 0.00 0.00 0.00 2.71
298 299 1.577468 CAACTGTACACGAGCCACAA 58.423 50.000 0.00 0.00 0.00 3.33
299 300 0.249699 CCAACTGTACACGAGCCACA 60.250 55.000 0.00 0.00 0.00 4.17
300 301 0.949105 CCCAACTGTACACGAGCCAC 60.949 60.000 0.00 0.00 0.00 5.01
301 302 1.369692 CCCAACTGTACACGAGCCA 59.630 57.895 0.00 0.00 0.00 4.75
302 303 2.033194 GCCCAACTGTACACGAGCC 61.033 63.158 0.00 0.00 0.00 4.70
303 304 2.380410 CGCCCAACTGTACACGAGC 61.380 63.158 0.00 0.00 0.00 5.03
304 305 0.732880 CTCGCCCAACTGTACACGAG 60.733 60.000 14.42 14.42 40.70 4.18
305 306 1.287815 CTCGCCCAACTGTACACGA 59.712 57.895 0.00 0.00 0.00 4.35
306 307 0.241749 TACTCGCCCAACTGTACACG 59.758 55.000 0.00 0.00 0.00 4.49
307 308 2.443887 TTACTCGCCCAACTGTACAC 57.556 50.000 0.00 0.00 0.00 2.90
308 309 3.132925 GTTTTACTCGCCCAACTGTACA 58.867 45.455 0.00 0.00 0.00 2.90
309 310 2.481568 GGTTTTACTCGCCCAACTGTAC 59.518 50.000 0.00 0.00 0.00 2.90
310 311 2.104451 TGGTTTTACTCGCCCAACTGTA 59.896 45.455 0.00 0.00 0.00 2.74
311 312 1.134037 TGGTTTTACTCGCCCAACTGT 60.134 47.619 0.00 0.00 0.00 3.55
312 313 1.600023 TGGTTTTACTCGCCCAACTG 58.400 50.000 0.00 0.00 0.00 3.16
313 314 2.351706 TTGGTTTTACTCGCCCAACT 57.648 45.000 0.00 0.00 32.20 3.16
314 315 2.352323 CCATTGGTTTTACTCGCCCAAC 60.352 50.000 0.00 0.00 39.61 3.77
315 316 1.889829 CCATTGGTTTTACTCGCCCAA 59.110 47.619 0.00 0.00 40.95 4.12
316 317 1.202952 ACCATTGGTTTTACTCGCCCA 60.203 47.619 1.37 0.00 27.29 5.36
317 318 1.471287 GACCATTGGTTTTACTCGCCC 59.529 52.381 10.29 0.00 35.25 6.13
318 319 1.471287 GGACCATTGGTTTTACTCGCC 59.529 52.381 10.29 0.00 35.25 5.54
319 320 1.471287 GGGACCATTGGTTTTACTCGC 59.529 52.381 10.29 0.57 35.25 5.03
335 336 1.270678 GCCAACTATCGGTATGGGGAC 60.271 57.143 0.00 0.00 33.45 4.46
336 337 1.053424 GCCAACTATCGGTATGGGGA 58.947 55.000 0.00 0.00 33.45 4.81
337 338 0.762418 TGCCAACTATCGGTATGGGG 59.238 55.000 0.00 0.00 33.45 4.96
338 339 2.038426 TGATGCCAACTATCGGTATGGG 59.962 50.000 0.00 0.00 33.45 4.00
339 340 3.401033 TGATGCCAACTATCGGTATGG 57.599 47.619 0.00 0.00 36.00 2.74
340 341 4.825422 AGATGATGCCAACTATCGGTATG 58.175 43.478 0.00 0.00 0.00 2.39
341 342 5.952347 TCTAGATGATGCCAACTATCGGTAT 59.048 40.000 0.00 0.00 29.12 2.73
342 343 5.321927 TCTAGATGATGCCAACTATCGGTA 58.678 41.667 0.00 0.00 29.12 4.02
343 344 4.152647 TCTAGATGATGCCAACTATCGGT 58.847 43.478 0.00 0.00 29.12 4.69
344 345 4.790765 TCTAGATGATGCCAACTATCGG 57.209 45.455 0.00 0.00 29.12 4.18
356 357 9.972106 TCTCACACATATACTCATCTAGATGAT 57.028 33.333 30.74 22.71 45.74 2.45
357 358 9.447157 CTCTCACACATATACTCATCTAGATGA 57.553 37.037 29.17 29.17 44.83 2.92
358 359 9.230122 ACTCTCACACATATACTCATCTAGATG 57.770 37.037 24.32 24.32 40.09 2.90
378 379 9.098355 CGGTGAGAAATATTTCAATTACTCTCA 57.902 33.333 26.02 16.54 39.61 3.27
379 380 9.314321 TCGGTGAGAAATATTTCAATTACTCTC 57.686 33.333 26.02 14.48 39.61 3.20
380 381 9.319143 CTCGGTGAGAAATATTTCAATTACTCT 57.681 33.333 26.02 6.37 39.61 3.24
381 382 8.064814 GCTCGGTGAGAAATATTTCAATTACTC 58.935 37.037 26.02 15.58 39.61 2.59
382 383 7.254455 CGCTCGGTGAGAAATATTTCAATTACT 60.254 37.037 26.02 7.85 39.61 2.24
383 384 6.846283 CGCTCGGTGAGAAATATTTCAATTAC 59.154 38.462 26.02 18.13 39.61 1.89
384 385 6.537301 ACGCTCGGTGAGAAATATTTCAATTA 59.463 34.615 26.02 9.49 39.61 1.40
385 386 5.354234 ACGCTCGGTGAGAAATATTTCAATT 59.646 36.000 26.02 9.20 39.61 2.32
386 387 4.876107 ACGCTCGGTGAGAAATATTTCAAT 59.124 37.500 26.02 9.87 39.61 2.57
387 388 4.250464 ACGCTCGGTGAGAAATATTTCAA 58.750 39.130 26.02 13.60 39.61 2.69
388 389 3.857052 ACGCTCGGTGAGAAATATTTCA 58.143 40.909 26.02 8.19 39.61 2.69
401 402 0.246635 AAGCTTACATCACGCTCGGT 59.753 50.000 0.00 0.00 32.70 4.69
402 403 0.647410 CAAGCTTACATCACGCTCGG 59.353 55.000 0.00 0.00 32.70 4.63
403 404 0.025513 GCAAGCTTACATCACGCTCG 59.974 55.000 0.00 0.00 32.70 5.03
404 405 0.025513 CGCAAGCTTACATCACGCTC 59.974 55.000 0.00 0.00 32.70 5.03
405 406 0.389817 TCGCAAGCTTACATCACGCT 60.390 50.000 0.00 0.00 35.09 5.07
406 407 0.652592 ATCGCAAGCTTACATCACGC 59.347 50.000 0.00 0.00 37.18 5.34
407 408 1.004610 CCATCGCAAGCTTACATCACG 60.005 52.381 0.00 0.00 37.18 4.35
408 409 2.009774 ACCATCGCAAGCTTACATCAC 58.990 47.619 0.00 0.00 37.18 3.06
409 410 2.401583 ACCATCGCAAGCTTACATCA 57.598 45.000 0.00 0.00 37.18 3.07
410 411 3.119849 ACAAACCATCGCAAGCTTACATC 60.120 43.478 0.00 0.00 37.18 3.06
411 412 2.819608 ACAAACCATCGCAAGCTTACAT 59.180 40.909 0.00 0.00 37.18 2.29
412 413 2.226330 ACAAACCATCGCAAGCTTACA 58.774 42.857 0.00 0.00 37.18 2.41
413 414 2.989422 ACAAACCATCGCAAGCTTAC 57.011 45.000 0.00 0.00 37.18 2.34
414 415 4.757657 TCTAAACAAACCATCGCAAGCTTA 59.242 37.500 0.00 0.00 37.18 3.09
415 416 2.888834 AAACAAACCATCGCAAGCTT 57.111 40.000 0.00 0.00 37.18 3.74
416 417 3.058224 GTCTAAACAAACCATCGCAAGCT 60.058 43.478 0.00 0.00 37.18 3.74
417 418 3.234386 GTCTAAACAAACCATCGCAAGC 58.766 45.455 0.00 0.00 37.18 4.01
418 419 3.252215 TGGTCTAAACAAACCATCGCAAG 59.748 43.478 0.00 0.00 40.60 4.01
419 420 3.215151 TGGTCTAAACAAACCATCGCAA 58.785 40.909 0.00 0.00 40.60 4.85
420 421 2.852449 TGGTCTAAACAAACCATCGCA 58.148 42.857 0.00 0.00 40.60 5.10
421 422 3.907894 TTGGTCTAAACAAACCATCGC 57.092 42.857 0.00 0.00 44.72 4.58
422 423 5.411361 TCAGATTGGTCTAAACAAACCATCG 59.589 40.000 0.00 0.00 44.72 3.84
423 424 6.206634 TGTCAGATTGGTCTAAACAAACCATC 59.793 38.462 0.00 0.00 44.72 3.51
424 425 6.068010 TGTCAGATTGGTCTAAACAAACCAT 58.932 36.000 0.00 0.00 44.72 3.55
425 426 5.441500 TGTCAGATTGGTCTAAACAAACCA 58.558 37.500 0.00 0.00 43.72 3.67
426 427 6.575162 ATGTCAGATTGGTCTAAACAAACC 57.425 37.500 0.00 0.00 34.74 3.27
429 430 9.513906 TGAATTATGTCAGATTGGTCTAAACAA 57.486 29.630 0.00 0.00 34.74 2.83
430 431 9.685276 ATGAATTATGTCAGATTGGTCTAAACA 57.315 29.630 0.00 0.00 35.23 2.83
434 435 9.770097 GAGAATGAATTATGTCAGATTGGTCTA 57.230 33.333 0.00 0.00 32.09 2.59
435 436 7.718753 GGAGAATGAATTATGTCAGATTGGTCT 59.281 37.037 0.00 0.00 34.14 3.85
436 437 7.500227 TGGAGAATGAATTATGTCAGATTGGTC 59.500 37.037 0.00 0.00 0.00 4.02
437 438 7.348815 TGGAGAATGAATTATGTCAGATTGGT 58.651 34.615 0.00 0.00 0.00 3.67
438 439 7.812690 TGGAGAATGAATTATGTCAGATTGG 57.187 36.000 0.00 0.00 0.00 3.16
439 440 9.063615 TCATGGAGAATGAATTATGTCAGATTG 57.936 33.333 0.00 0.00 42.49 2.67
454 455 1.671979 ACCGTGCATCATGGAGAATG 58.328 50.000 11.67 0.00 42.73 2.67
455 456 2.292267 GAACCGTGCATCATGGAGAAT 58.708 47.619 11.67 0.00 42.73 2.40
456 457 1.003003 TGAACCGTGCATCATGGAGAA 59.997 47.619 11.67 0.00 42.73 2.87
457 458 0.612744 TGAACCGTGCATCATGGAGA 59.387 50.000 11.67 0.00 42.73 3.71
458 459 1.399440 CTTGAACCGTGCATCATGGAG 59.601 52.381 11.67 0.00 42.73 3.86
459 460 1.271325 ACTTGAACCGTGCATCATGGA 60.271 47.619 11.67 0.00 42.73 3.41
460 461 1.167851 ACTTGAACCGTGCATCATGG 58.832 50.000 3.66 3.66 45.34 3.66
461 462 2.995466 AACTTGAACCGTGCATCATG 57.005 45.000 0.00 0.00 0.00 3.07
462 463 4.943705 AGAATAACTTGAACCGTGCATCAT 59.056 37.500 0.00 0.00 0.00 2.45
463 464 4.323417 AGAATAACTTGAACCGTGCATCA 58.677 39.130 0.00 0.00 0.00 3.07
464 465 4.946784 AGAATAACTTGAACCGTGCATC 57.053 40.909 0.00 0.00 0.00 3.91
465 466 5.009610 ACAAAGAATAACTTGAACCGTGCAT 59.990 36.000 0.00 0.00 38.98 3.96
466 467 4.336993 ACAAAGAATAACTTGAACCGTGCA 59.663 37.500 0.00 0.00 38.98 4.57
467 468 4.855531 ACAAAGAATAACTTGAACCGTGC 58.144 39.130 0.00 0.00 38.98 5.34
468 469 6.300354 AGACAAAGAATAACTTGAACCGTG 57.700 37.500 0.00 0.00 38.98 4.94
469 470 6.937436 AAGACAAAGAATAACTTGAACCGT 57.063 33.333 0.00 0.00 38.98 4.83
470 471 9.543018 GATTAAGACAAAGAATAACTTGAACCG 57.457 33.333 0.00 0.00 38.98 4.44
505 506 4.937620 GCTCCAACTAAACTGTCATGATGA 59.062 41.667 0.00 0.00 0.00 2.92
506 507 4.696877 TGCTCCAACTAAACTGTCATGATG 59.303 41.667 0.00 0.00 0.00 3.07
507 508 4.910195 TGCTCCAACTAAACTGTCATGAT 58.090 39.130 0.00 0.00 0.00 2.45
508 509 4.350368 TGCTCCAACTAAACTGTCATGA 57.650 40.909 0.00 0.00 0.00 3.07
509 510 4.756642 TCTTGCTCCAACTAAACTGTCATG 59.243 41.667 0.00 0.00 0.00 3.07
510 511 4.973168 TCTTGCTCCAACTAAACTGTCAT 58.027 39.130 0.00 0.00 0.00 3.06
511 512 4.415881 TCTTGCTCCAACTAAACTGTCA 57.584 40.909 0.00 0.00 0.00 3.58
512 513 5.948992 ATTCTTGCTCCAACTAAACTGTC 57.051 39.130 0.00 0.00 0.00 3.51
513 514 6.461509 CCAAATTCTTGCTCCAACTAAACTGT 60.462 38.462 0.00 0.00 0.00 3.55
514 515 5.922544 CCAAATTCTTGCTCCAACTAAACTG 59.077 40.000 0.00 0.00 0.00 3.16
515 516 5.509670 GCCAAATTCTTGCTCCAACTAAACT 60.510 40.000 0.00 0.00 0.00 2.66
516 517 4.686091 GCCAAATTCTTGCTCCAACTAAAC 59.314 41.667 0.00 0.00 0.00 2.01
517 518 4.343526 TGCCAAATTCTTGCTCCAACTAAA 59.656 37.500 0.00 0.00 0.00 1.85
518 519 3.894427 TGCCAAATTCTTGCTCCAACTAA 59.106 39.130 0.00 0.00 0.00 2.24
519 520 3.495331 TGCCAAATTCTTGCTCCAACTA 58.505 40.909 0.00 0.00 0.00 2.24
520 521 2.318908 TGCCAAATTCTTGCTCCAACT 58.681 42.857 0.00 0.00 0.00 3.16
521 522 2.802247 GTTGCCAAATTCTTGCTCCAAC 59.198 45.455 0.00 0.00 32.51 3.77
522 523 2.545532 CGTTGCCAAATTCTTGCTCCAA 60.546 45.455 0.00 0.00 0.00 3.53
523 524 1.000385 CGTTGCCAAATTCTTGCTCCA 60.000 47.619 0.00 0.00 0.00 3.86
524 525 1.269448 TCGTTGCCAAATTCTTGCTCC 59.731 47.619 0.00 0.00 0.00 4.70
525 526 2.030805 ACTCGTTGCCAAATTCTTGCTC 60.031 45.455 0.00 0.00 0.00 4.26
526 527 1.956477 ACTCGTTGCCAAATTCTTGCT 59.044 42.857 0.00 0.00 0.00 3.91
527 528 2.287547 TGACTCGTTGCCAAATTCTTGC 60.288 45.455 0.00 0.00 0.00 4.01
528 529 3.624326 TGACTCGTTGCCAAATTCTTG 57.376 42.857 0.00 0.00 0.00 3.02
529 530 4.647424 TTTGACTCGTTGCCAAATTCTT 57.353 36.364 0.00 0.00 0.00 2.52
530 531 4.097892 AGTTTTGACTCGTTGCCAAATTCT 59.902 37.500 0.00 0.00 30.98 2.40
531 532 4.359706 AGTTTTGACTCGTTGCCAAATTC 58.640 39.130 0.00 0.00 30.98 2.17
532 533 4.097892 AGAGTTTTGACTCGTTGCCAAATT 59.902 37.500 1.31 0.00 41.38 1.82
533 534 3.632145 AGAGTTTTGACTCGTTGCCAAAT 59.368 39.130 1.31 0.00 41.38 2.32
534 535 3.013921 AGAGTTTTGACTCGTTGCCAAA 58.986 40.909 1.31 0.00 41.38 3.28
535 536 2.612212 GAGAGTTTTGACTCGTTGCCAA 59.388 45.455 1.31 0.00 41.38 4.52
536 537 2.158957 AGAGAGTTTTGACTCGTTGCCA 60.159 45.455 1.31 0.00 41.38 4.92
537 538 2.476997 GAGAGAGTTTTGACTCGTTGCC 59.523 50.000 1.31 0.00 41.38 4.52
538 539 3.385577 AGAGAGAGTTTTGACTCGTTGC 58.614 45.455 1.31 0.00 41.38 4.17
539 540 5.043903 TGAAGAGAGAGTTTTGACTCGTTG 58.956 41.667 1.31 0.00 41.38 4.10
540 541 5.263968 TGAAGAGAGAGTTTTGACTCGTT 57.736 39.130 1.31 0.00 41.38 3.85
541 542 4.794655 GCTGAAGAGAGAGTTTTGACTCGT 60.795 45.833 1.31 0.00 41.38 4.18
542 543 3.672867 GCTGAAGAGAGAGTTTTGACTCG 59.327 47.826 1.31 0.00 41.38 4.18
543 544 3.993736 GGCTGAAGAGAGAGTTTTGACTC 59.006 47.826 0.00 0.00 37.03 3.36
544 545 3.645687 AGGCTGAAGAGAGAGTTTTGACT 59.354 43.478 0.00 0.00 0.00 3.41
545 546 4.001618 AGGCTGAAGAGAGAGTTTTGAC 57.998 45.455 0.00 0.00 0.00 3.18
546 547 4.696479 AAGGCTGAAGAGAGAGTTTTGA 57.304 40.909 0.00 0.00 0.00 2.69
547 548 5.062528 AGAAAGGCTGAAGAGAGAGTTTTG 58.937 41.667 0.00 0.00 0.00 2.44
548 549 5.303259 AGAAAGGCTGAAGAGAGAGTTTT 57.697 39.130 0.00 0.00 0.00 2.43
549 550 4.972751 AGAAAGGCTGAAGAGAGAGTTT 57.027 40.909 0.00 0.00 0.00 2.66
550 551 4.346418 TCAAGAAAGGCTGAAGAGAGAGTT 59.654 41.667 0.00 0.00 0.00 3.01
551 552 3.900601 TCAAGAAAGGCTGAAGAGAGAGT 59.099 43.478 0.00 0.00 0.00 3.24
552 553 4.533919 TCAAGAAAGGCTGAAGAGAGAG 57.466 45.455 0.00 0.00 0.00 3.20
553 554 4.963318 TTCAAGAAAGGCTGAAGAGAGA 57.037 40.909 0.00 0.00 0.00 3.10
554 555 4.084118 CGTTTCAAGAAAGGCTGAAGAGAG 60.084 45.833 2.76 0.00 30.87 3.20
555 556 3.809832 CGTTTCAAGAAAGGCTGAAGAGA 59.190 43.478 2.76 0.00 30.87 3.10
556 557 3.561725 ACGTTTCAAGAAAGGCTGAAGAG 59.438 43.478 13.38 0.00 39.12 2.85
557 558 3.541632 ACGTTTCAAGAAAGGCTGAAGA 58.458 40.909 13.38 0.00 39.12 2.87
558 559 3.971032 ACGTTTCAAGAAAGGCTGAAG 57.029 42.857 13.38 0.00 39.12 3.02
559 560 4.699637 TCTACGTTTCAAGAAAGGCTGAA 58.300 39.130 13.38 0.00 39.12 3.02
560 561 4.307432 CTCTACGTTTCAAGAAAGGCTGA 58.693 43.478 13.38 10.88 39.12 4.26
561 562 3.120511 GCTCTACGTTTCAAGAAAGGCTG 60.121 47.826 13.38 7.93 39.12 4.85
562 563 3.067833 GCTCTACGTTTCAAGAAAGGCT 58.932 45.455 13.38 5.72 39.12 4.58
563 564 2.159827 CGCTCTACGTTTCAAGAAAGGC 60.160 50.000 13.38 0.00 39.12 4.35
564 565 2.159827 GCGCTCTACGTTTCAAGAAAGG 60.160 50.000 0.00 12.23 46.11 3.11
565 566 2.731976 AGCGCTCTACGTTTCAAGAAAG 59.268 45.455 2.64 0.00 46.11 2.62
566 567 2.750948 AGCGCTCTACGTTTCAAGAAA 58.249 42.857 2.64 0.00 46.11 2.52
567 568 2.433868 AGCGCTCTACGTTTCAAGAA 57.566 45.000 2.64 0.00 46.11 2.52
568 569 2.433868 AAGCGCTCTACGTTTCAAGA 57.566 45.000 12.06 0.00 41.81 3.02
569 570 3.521524 AAAAGCGCTCTACGTTTCAAG 57.478 42.857 12.06 0.00 45.06 3.02
570 571 3.547214 CCAAAAAGCGCTCTACGTTTCAA 60.547 43.478 12.06 0.00 45.06 2.69
571 572 2.032377 CCAAAAAGCGCTCTACGTTTCA 60.032 45.455 12.06 0.00 45.06 2.69
572 573 2.571206 CCAAAAAGCGCTCTACGTTTC 58.429 47.619 12.06 0.00 45.06 2.78
574 575 0.237498 GCCAAAAAGCGCTCTACGTT 59.763 50.000 12.06 0.00 46.11 3.99
575 576 1.574702 GGCCAAAAAGCGCTCTACGT 61.575 55.000 12.06 0.00 46.11 3.57
577 578 1.241315 TGGGCCAAAAAGCGCTCTAC 61.241 55.000 12.06 0.00 45.35 2.59
578 579 0.323360 ATGGGCCAAAAAGCGCTCTA 60.323 50.000 12.06 0.00 45.35 2.43
579 580 1.607467 ATGGGCCAAAAAGCGCTCT 60.607 52.632 12.06 0.00 45.35 4.09
580 581 1.446618 CATGGGCCAAAAAGCGCTC 60.447 57.895 12.06 0.00 45.35 5.03
581 582 2.658422 CATGGGCCAAAAAGCGCT 59.342 55.556 11.89 2.64 45.35 5.92
582 583 3.120385 GCATGGGCCAAAAAGCGC 61.120 61.111 11.89 0.00 45.34 5.92
583 584 2.810458 CGCATGGGCCAAAAAGCG 60.810 61.111 24.10 24.10 39.17 4.68
584 585 1.737735 GTCGCATGGGCCAAAAAGC 60.738 57.895 11.89 11.94 36.38 3.51
585 586 1.444212 CGTCGCATGGGCCAAAAAG 60.444 57.895 11.89 2.43 36.38 2.27
586 587 1.456196 TTCGTCGCATGGGCCAAAAA 61.456 50.000 11.89 0.00 36.38 1.94
587 588 1.861542 CTTCGTCGCATGGGCCAAAA 61.862 55.000 11.89 0.00 36.38 2.44
588 589 2.281831 TTCGTCGCATGGGCCAAA 60.282 55.556 11.89 0.00 36.38 3.28
589 590 2.745884 CTTCGTCGCATGGGCCAA 60.746 61.111 11.89 0.00 36.38 4.52
590 591 3.664025 CTCTTCGTCGCATGGGCCA 62.664 63.158 9.61 9.61 36.38 5.36
591 592 2.892425 CTCTTCGTCGCATGGGCC 60.892 66.667 4.59 0.00 36.38 5.80
592 593 2.125512 ACTCTTCGTCGCATGGGC 60.126 61.111 4.59 0.00 0.00 5.36
593 594 1.215382 TGACTCTTCGTCGCATGGG 59.785 57.895 2.76 2.76 45.87 4.00
594 595 4.889427 TGACTCTTCGTCGCATGG 57.111 55.556 0.00 0.00 45.87 3.66
598 599 3.777016 AAGAGTGACTCTTCGTCGC 57.223 52.632 21.42 0.00 46.42 5.19
605 606 1.540267 CTGGACCGAAGAGTGACTCT 58.460 55.000 9.77 9.77 43.37 3.24
606 607 0.528470 CCTGGACCGAAGAGTGACTC 59.472 60.000 3.98 3.98 0.00 3.36
607 608 0.900647 CCCTGGACCGAAGAGTGACT 60.901 60.000 0.00 0.00 0.00 3.41
608 609 1.592223 CCCTGGACCGAAGAGTGAC 59.408 63.158 0.00 0.00 0.00 3.67
609 610 1.609501 CCCCTGGACCGAAGAGTGA 60.610 63.158 0.00 0.00 0.00 3.41
610 611 1.608717 CTCCCCTGGACCGAAGAGTG 61.609 65.000 0.00 0.00 0.00 3.51
611 612 1.305381 CTCCCCTGGACCGAAGAGT 60.305 63.158 0.00 0.00 0.00 3.24
612 613 2.060980 CCTCCCCTGGACCGAAGAG 61.061 68.421 0.00 0.00 0.00 2.85
613 614 1.886730 ATCCTCCCCTGGACCGAAGA 61.887 60.000 0.00 0.00 39.17 2.87
614 615 0.105658 TATCCTCCCCTGGACCGAAG 60.106 60.000 0.00 0.00 39.17 3.79
615 616 0.105658 CTATCCTCCCCTGGACCGAA 60.106 60.000 0.00 0.00 39.17 4.30
616 617 1.294426 ACTATCCTCCCCTGGACCGA 61.294 60.000 0.00 0.00 39.17 4.69
617 618 1.115930 CACTATCCTCCCCTGGACCG 61.116 65.000 0.00 0.00 39.17 4.79
618 619 0.764752 CCACTATCCTCCCCTGGACC 60.765 65.000 0.00 0.00 39.17 4.46
619 620 0.764752 CCCACTATCCTCCCCTGGAC 60.765 65.000 0.00 0.00 39.17 4.02
620 621 0.934302 TCCCACTATCCTCCCCTGGA 60.934 60.000 0.00 0.00 40.82 3.86
621 622 0.194587 ATCCCACTATCCTCCCCTGG 59.805 60.000 0.00 0.00 0.00 4.45
622 623 2.124560 AATCCCACTATCCTCCCCTG 57.875 55.000 0.00 0.00 0.00 4.45
623 624 5.858532 ATATAATCCCACTATCCTCCCCT 57.141 43.478 0.00 0.00 0.00 4.79
624 625 9.102453 GTTATATATAATCCCACTATCCTCCCC 57.898 40.741 8.40 0.00 0.00 4.81
625 626 9.900112 AGTTATATATAATCCCACTATCCTCCC 57.100 37.037 8.40 0.00 0.00 4.30
698 699 7.544566 TCTTAGTCGCGTTGAGATTAGAATTTT 59.455 33.333 5.77 0.00 0.00 1.82
699 700 7.033791 TCTTAGTCGCGTTGAGATTAGAATTT 58.966 34.615 5.77 0.00 0.00 1.82
700 701 6.561614 TCTTAGTCGCGTTGAGATTAGAATT 58.438 36.000 5.77 0.00 0.00 2.17
701 702 6.132791 TCTTAGTCGCGTTGAGATTAGAAT 57.867 37.500 5.77 0.00 0.00 2.40
702 703 5.556355 TCTTAGTCGCGTTGAGATTAGAA 57.444 39.130 5.77 0.00 0.00 2.10
704 705 6.627690 TTTTCTTAGTCGCGTTGAGATTAG 57.372 37.500 5.77 0.00 0.00 1.73
705 706 8.589629 GTTATTTTCTTAGTCGCGTTGAGATTA 58.410 33.333 5.77 0.02 0.00 1.75
706 707 7.331193 AGTTATTTTCTTAGTCGCGTTGAGATT 59.669 33.333 5.77 0.00 0.00 2.40
707 708 6.812160 AGTTATTTTCTTAGTCGCGTTGAGAT 59.188 34.615 5.77 0.00 0.00 2.75
708 709 6.154445 AGTTATTTTCTTAGTCGCGTTGAGA 58.846 36.000 5.77 4.87 0.00 3.27
709 710 6.390987 AGTTATTTTCTTAGTCGCGTTGAG 57.609 37.500 5.77 2.28 0.00 3.02
710 711 7.872163 TTAGTTATTTTCTTAGTCGCGTTGA 57.128 32.000 5.77 0.00 0.00 3.18
711 712 8.592998 AGATTAGTTATTTTCTTAGTCGCGTTG 58.407 33.333 5.77 0.00 0.00 4.10
712 713 8.699283 AGATTAGTTATTTTCTTAGTCGCGTT 57.301 30.769 5.77 0.00 0.00 4.84
713 714 8.189460 AGAGATTAGTTATTTTCTTAGTCGCGT 58.811 33.333 5.77 0.00 0.00 6.01
714 715 8.563289 AGAGATTAGTTATTTTCTTAGTCGCG 57.437 34.615 0.00 0.00 0.00 5.87
715 716 9.738832 AGAGAGATTAGTTATTTTCTTAGTCGC 57.261 33.333 0.00 0.00 0.00 5.19
863 864 2.570284 GCTTCCGGTGGGGTTTTGG 61.570 63.158 0.00 0.00 37.00 3.28
1547 1549 1.539388 CAAAGTTGCCCTGTTATGCGA 59.461 47.619 0.00 0.00 0.00 5.10
1599 1601 6.679919 GCGTAAACATCAACCGTTAATTAGAC 59.320 38.462 0.00 0.00 0.00 2.59
2079 2224 1.073923 GTCCAAAGAAAGGGGAGCTGA 59.926 52.381 0.00 0.00 0.00 4.26
2175 2320 7.815840 TCAAGAAATCCAGACAACAAATACA 57.184 32.000 0.00 0.00 0.00 2.29
2602 2747 2.609350 TGTTTACGATTACCTGGCGTC 58.391 47.619 0.34 0.00 39.24 5.19
2740 2888 8.837389 GTGTAATAAAAGAGAACACAAGGACTT 58.163 33.333 0.00 0.00 40.08 3.01
2781 2929 7.066645 TGCTAATGAAGTTGAAGGATGAGAATG 59.933 37.037 0.00 0.00 0.00 2.67
3127 3308 7.001073 GGAATATTGCTAGAAAGGTGAAGGAT 58.999 38.462 0.00 0.00 0.00 3.24
3129 3310 5.532779 GGGAATATTGCTAGAAAGGTGAAGG 59.467 44.000 6.93 0.00 0.00 3.46
3926 4191 9.066892 ACAGTTGATAACTAAAATCAGAAAGCA 57.933 29.630 0.00 0.00 40.46 3.91
4142 4407 7.004086 ACAGATGTAAAAATTCCCAAGTGAGA 58.996 34.615 0.00 0.00 0.00 3.27
4143 4408 7.219484 ACAGATGTAAAAATTCCCAAGTGAG 57.781 36.000 0.00 0.00 0.00 3.51
4160 4431 8.263640 AGCAAGATACTAATGAAGAACAGATGT 58.736 33.333 0.00 0.00 0.00 3.06
4361 5202 1.066918 GCATGGGCATTGTGCTAGC 59.933 57.895 8.10 8.10 44.28 3.42
4492 5333 2.034532 TCCGACGCCTACCACTCA 59.965 61.111 0.00 0.00 0.00 3.41
4589 5430 4.094294 TGCCGCAATCAACTTACTAATGAC 59.906 41.667 0.00 0.00 0.00 3.06
5169 6118 4.821589 CCTTCGGGTCAGAGCGCC 62.822 72.222 2.29 0.00 0.00 6.53
5172 6121 2.470938 AAAGGCCTTCGGGTCAGAGC 62.471 60.000 20.79 0.00 43.41 4.09
5202 6252 5.729454 GCGTCAGTTTGATTTGTACTGTTGT 60.729 40.000 0.00 0.00 0.00 3.32
5204 6254 4.334203 TGCGTCAGTTTGATTTGTACTGTT 59.666 37.500 0.00 0.00 0.00 3.16
5206 6256 4.466567 TGCGTCAGTTTGATTTGTACTG 57.533 40.909 0.00 0.00 0.00 2.74
5275 6326 1.454653 GTAGTGGCGTCGTCAAACTTC 59.545 52.381 0.00 0.00 0.00 3.01
5334 6385 9.599866 ACGATGTCATATTCACAATTAGAGAAA 57.400 29.630 0.00 0.00 30.59 2.52
5339 6390 9.533983 GCAATACGATGTCATATTCACAATTAG 57.466 33.333 0.00 0.00 0.00 1.73
5340 6391 8.503196 GGCAATACGATGTCATATTCACAATTA 58.497 33.333 0.00 0.00 0.00 1.40
5341 6392 7.229306 AGGCAATACGATGTCATATTCACAATT 59.771 33.333 0.00 0.00 0.00 2.32
5342 6393 6.712095 AGGCAATACGATGTCATATTCACAAT 59.288 34.615 0.00 0.00 0.00 2.71
5343 6394 6.054941 AGGCAATACGATGTCATATTCACAA 58.945 36.000 0.00 0.00 0.00 3.33
5344 6395 5.610398 AGGCAATACGATGTCATATTCACA 58.390 37.500 0.00 0.00 0.00 3.58
5345 6396 6.545504 AAGGCAATACGATGTCATATTCAC 57.454 37.500 0.00 0.00 0.00 3.18
5466 6517 2.088674 GAGGTGCAGGTGACGACACT 62.089 60.000 17.14 1.51 45.32 3.55
5490 6541 3.760684 GTCAACCAGCCAGAAAATGAGAT 59.239 43.478 0.00 0.00 0.00 2.75
5503 6554 1.673665 CAGCTCAGGGTCAACCAGC 60.674 63.158 0.89 1.84 43.89 4.85
5505 6556 1.951209 TATCAGCTCAGGGTCAACCA 58.049 50.000 0.89 0.00 43.89 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.