Multiple sequence alignment - TraesCS2D01G239000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G239000 chr2D 100.000 8732 0 0 1 8732 250610334 250619065 0.000000e+00 16126.0
1 TraesCS2D01G239000 chr2D 95.553 4902 160 38 1828 6687 368812179 368817064 0.000000e+00 7792.0
2 TraesCS2D01G239000 chr2D 87.535 353 26 13 1465 1813 260026449 260026111 8.220000e-105 392.0
3 TraesCS2D01G239000 chr2D 87.283 346 25 16 1482 1815 62399568 62399230 2.300000e-100 377.0
4 TraesCS2D01G239000 chr7D 98.351 4548 68 4 2141 6686 334847716 334843174 0.000000e+00 7976.0
5 TraesCS2D01G239000 chr7D 96.077 4894 124 40 1828 6687 237846837 237851696 0.000000e+00 7912.0
6 TraesCS2D01G239000 chr7D 97.445 4579 108 6 2115 6687 536805014 536809589 0.000000e+00 7799.0
7 TraesCS2D01G239000 chr7D 95.790 4846 152 27 1847 6662 201182624 201187447 0.000000e+00 7771.0
8 TraesCS2D01G239000 chr7D 87.097 372 34 10 1482 1848 312561596 312561234 8.160000e-110 409.0
9 TraesCS2D01G239000 chr7D 89.637 193 20 0 8070 8262 588691067 588690875 6.770000e-61 246.0
10 TraesCS2D01G239000 chr7D 89.189 185 20 0 8078 8262 390686404 390686588 1.900000e-56 231.0
11 TraesCS2D01G239000 chr3D 96.263 4870 144 23 1847 6687 575228910 575224050 0.000000e+00 7950.0
12 TraesCS2D01G239000 chr3D 97.693 4551 99 4 2139 6687 541386399 541381853 0.000000e+00 7817.0
13 TraesCS2D01G239000 chr3D 97.484 4571 103 5 2127 6687 123683238 123678670 0.000000e+00 7793.0
14 TraesCS2D01G239000 chr3D 85.446 426 30 22 1482 1894 196968646 196968240 1.750000e-111 414.0
15 TraesCS2D01G239000 chr3D 88.824 340 19 13 1482 1813 179937077 179936749 4.910000e-107 399.0
16 TraesCS2D01G239000 chr3D 90.244 41 3 1 2031 2070 418411864 418411904 1.600000e-02 52.8
17 TraesCS2D01G239000 chr4D 98.132 4550 81 3 2140 6687 277398193 277402740 0.000000e+00 7928.0
18 TraesCS2D01G239000 chr4D 96.174 4861 148 25 1847 6687 72251173 72256015 0.000000e+00 7912.0
19 TraesCS2D01G239000 chr4D 97.613 4566 101 5 2127 6686 323569749 323574312 0.000000e+00 7821.0
20 TraesCS2D01G239000 chr4D 89.532 363 18 9 1482 1841 432777296 432776951 8.050000e-120 442.0
21 TraesCS2D01G239000 chr6D 97.898 4567 88 5 2127 6686 273916598 273921163 0.000000e+00 7895.0
22 TraesCS2D01G239000 chr6D 97.834 4571 92 5 2118 6686 83170879 83166314 0.000000e+00 7886.0
23 TraesCS2D01G239000 chr6D 92.647 272 13 5 1481 1751 277127583 277127318 1.380000e-102 385.0
24 TraesCS2D01G239000 chr6D 87.941 340 22 14 1482 1813 126835212 126834884 4.950000e-102 383.0
25 TraesCS2D01G239000 chr5D 96.020 4874 158 22 1847 6693 334943091 334938227 0.000000e+00 7893.0
26 TraesCS2D01G239000 chr5D 95.959 4875 146 34 1848 6686 73412108 73416967 0.000000e+00 7864.0
27 TraesCS2D01G239000 chr5D 97.656 4565 103 2 2127 6687 499733370 499728806 0.000000e+00 7834.0
28 TraesCS2D01G239000 chr5D 93.407 364 18 4 1481 1841 323567538 323567898 1.290000e-147 534.0
29 TraesCS2D01G239000 chr5D 95.341 279 6 1 1793 2071 323567800 323568071 3.740000e-118 436.0
30 TraesCS2D01G239000 chr1D 95.238 3465 126 25 1828 5260 85513042 85516499 0.000000e+00 5448.0
31 TraesCS2D01G239000 chr1D 89.071 183 18 2 8081 8262 54972575 54972394 8.820000e-55 226.0
32 TraesCS2D01G239000 chr2A 98.717 1325 16 1 6687 8011 249740032 249741355 0.000000e+00 2351.0
33 TraesCS2D01G239000 chr2A 95.548 831 25 6 656 1482 249739215 249740037 0.000000e+00 1319.0
34 TraesCS2D01G239000 chr2A 94.294 666 33 4 1 664 249724371 249725033 0.000000e+00 1014.0
35 TraesCS2D01G239000 chr2A 93.569 311 15 3 8008 8318 249746858 249747163 7.990000e-125 459.0
36 TraesCS2D01G239000 chr2A 97.436 156 3 1 8409 8563 249747463 249747618 1.870000e-66 265.0
37 TraesCS2D01G239000 chr2A 87.923 207 23 2 8069 8274 5112191 5111986 8.760000e-60 243.0
38 TraesCS2D01G239000 chr2B 90.868 219 12 2 1 219 278456462 278456252 3.990000e-73 287.0
39 TraesCS2D01G239000 chr7A 89.418 189 19 1 8078 8266 30660722 30660909 4.070000e-58 237.0
40 TraesCS2D01G239000 chr3B 89.730 185 19 0 8078 8262 417729688 417729504 4.070000e-58 237.0
41 TraesCS2D01G239000 chr3B 89.730 185 19 0 8078 8262 637619603 637619787 4.070000e-58 237.0
42 TraesCS2D01G239000 chr5B 88.830 188 20 1 8078 8265 270633756 270633570 6.820000e-56 230.0
43 TraesCS2D01G239000 chr4A 88.889 171 12 7 8565 8732 716257973 716258139 4.130000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G239000 chr2D 250610334 250619065 8731 False 16126 16126 100.0000 1 8732 1 chr2D.!!$F1 8731
1 TraesCS2D01G239000 chr2D 368812179 368817064 4885 False 7792 7792 95.5530 1828 6687 1 chr2D.!!$F2 4859
2 TraesCS2D01G239000 chr7D 334843174 334847716 4542 True 7976 7976 98.3510 2141 6686 1 chr7D.!!$R2 4545
3 TraesCS2D01G239000 chr7D 237846837 237851696 4859 False 7912 7912 96.0770 1828 6687 1 chr7D.!!$F2 4859
4 TraesCS2D01G239000 chr7D 536805014 536809589 4575 False 7799 7799 97.4450 2115 6687 1 chr7D.!!$F4 4572
5 TraesCS2D01G239000 chr7D 201182624 201187447 4823 False 7771 7771 95.7900 1847 6662 1 chr7D.!!$F1 4815
6 TraesCS2D01G239000 chr3D 575224050 575228910 4860 True 7950 7950 96.2630 1847 6687 1 chr3D.!!$R5 4840
7 TraesCS2D01G239000 chr3D 541381853 541386399 4546 True 7817 7817 97.6930 2139 6687 1 chr3D.!!$R4 4548
8 TraesCS2D01G239000 chr3D 123678670 123683238 4568 True 7793 7793 97.4840 2127 6687 1 chr3D.!!$R1 4560
9 TraesCS2D01G239000 chr4D 277398193 277402740 4547 False 7928 7928 98.1320 2140 6687 1 chr4D.!!$F2 4547
10 TraesCS2D01G239000 chr4D 72251173 72256015 4842 False 7912 7912 96.1740 1847 6687 1 chr4D.!!$F1 4840
11 TraesCS2D01G239000 chr4D 323569749 323574312 4563 False 7821 7821 97.6130 2127 6686 1 chr4D.!!$F3 4559
12 TraesCS2D01G239000 chr6D 273916598 273921163 4565 False 7895 7895 97.8980 2127 6686 1 chr6D.!!$F1 4559
13 TraesCS2D01G239000 chr6D 83166314 83170879 4565 True 7886 7886 97.8340 2118 6686 1 chr6D.!!$R1 4568
14 TraesCS2D01G239000 chr5D 334938227 334943091 4864 True 7893 7893 96.0200 1847 6693 1 chr5D.!!$R1 4846
15 TraesCS2D01G239000 chr5D 73412108 73416967 4859 False 7864 7864 95.9590 1848 6686 1 chr5D.!!$F1 4838
16 TraesCS2D01G239000 chr5D 499728806 499733370 4564 True 7834 7834 97.6560 2127 6687 1 chr5D.!!$R2 4560
17 TraesCS2D01G239000 chr5D 323567538 323568071 533 False 485 534 94.3740 1481 2071 2 chr5D.!!$F2 590
18 TraesCS2D01G239000 chr1D 85513042 85516499 3457 False 5448 5448 95.2380 1828 5260 1 chr1D.!!$F1 3432
19 TraesCS2D01G239000 chr2A 249739215 249741355 2140 False 1835 2351 97.1325 656 8011 2 chr2A.!!$F2 7355
20 TraesCS2D01G239000 chr2A 249724371 249725033 662 False 1014 1014 94.2940 1 664 1 chr2A.!!$F1 663
21 TraesCS2D01G239000 chr2A 249746858 249747618 760 False 362 459 95.5025 8008 8563 2 chr2A.!!$F3 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 810 0.243636 CCATTCAAAGTGGCCCGTTC 59.756 55.000 0.00 0.0 0.00 3.95 F
1479 1486 0.032952 GCGTGGAAGTACAGTGGTCA 59.967 55.000 0.00 0.0 0.00 4.02 F
2405 2475 0.107508 GGTTGCTGATGAGGCTGCTA 60.108 55.000 0.00 0.0 34.32 3.49 F
2899 2969 0.324614 TCATGGAGGCGCTTTCAGAA 59.675 50.000 6.66 0.0 0.00 3.02 F
3043 3113 0.768221 TCTTGCCCACTCCTTCTGGT 60.768 55.000 0.00 0.0 34.23 4.00 F
3309 3386 1.535687 ACCCGCCCTCTACACAGTT 60.536 57.895 0.00 0.0 0.00 3.16 F
4970 5056 1.534163 CTCGTCATCGTCCGCCTATTA 59.466 52.381 0.00 0.0 38.33 0.98 F
6198 6290 0.878523 CAGTTTCCCGTTCGAGTGCA 60.879 55.000 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2166 0.599204 GAACGAGGACAAACCGCAGA 60.599 55.000 0.00 0.00 44.74 4.26 R
2899 2969 1.135257 CGAGTCTCCTCAGCACGAATT 60.135 52.381 0.00 0.00 37.59 2.17 R
3639 3722 0.605589 GTCCAACTCCCAAAGACCCG 60.606 60.000 0.00 0.00 0.00 5.28 R
3795 3878 1.464198 ACAGACCCCAGAAGGCCTT 60.464 57.895 20.65 20.65 0.00 4.35 R
4956 5042 1.544691 AGCGATTAATAGGCGGACGAT 59.455 47.619 0.00 0.00 0.00 3.73 R
5980 6070 3.506810 GAGAACACGAAGGAGATGACTG 58.493 50.000 0.00 0.00 0.00 3.51 R
6892 6990 0.877071 CAGGATATGCAATGACGGCC 59.123 55.000 0.00 0.00 0.00 6.13 R
8669 9273 0.107459 CTTAGAGTTCCTGCTGGGGC 60.107 60.000 10.07 3.20 39.26 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 8.415192 TCATTTCTGCAATATTGAAATCTTGC 57.585 30.769 19.73 15.44 44.20 4.01
106 107 2.408271 ATGCATTCACACGACCTCAT 57.592 45.000 0.00 0.00 0.00 2.90
149 150 7.243604 TGACGGTTTTATTCCTCCTAGTTTA 57.756 36.000 0.00 0.00 0.00 2.01
193 194 8.893727 GGAGATAGAGTAGAATCTTAGAGCATC 58.106 40.741 0.00 0.00 32.60 3.91
227 228 4.439968 CCCTCAAACCTTTCCTATACGTC 58.560 47.826 0.00 0.00 0.00 4.34
270 271 5.408604 ACTGTCTGATCACGAAAACAATACC 59.591 40.000 0.00 0.00 0.00 2.73
275 276 4.216687 TGATCACGAAAACAATACCCAACC 59.783 41.667 0.00 0.00 0.00 3.77
289 290 0.609957 CCAACCGGACCCCTTAAACC 60.610 60.000 9.46 0.00 0.00 3.27
300 301 3.118149 ACCCCTTAAACCTGCCTTATACG 60.118 47.826 0.00 0.00 0.00 3.06
301 302 3.118149 CCCCTTAAACCTGCCTTATACGT 60.118 47.826 0.00 0.00 0.00 3.57
318 319 3.533105 TGTGTGTCGGAGTGGCGT 61.533 61.111 0.00 0.00 0.00 5.68
374 375 0.393808 GCGTATGGGGTTGTGTGGAT 60.394 55.000 0.00 0.00 0.00 3.41
376 377 1.065782 CGTATGGGGTTGTGTGGATCA 60.066 52.381 0.00 0.00 0.00 2.92
423 425 0.246910 GGAGGGAGACGAACCAAGTC 59.753 60.000 0.00 0.00 38.81 3.01
493 495 4.770010 TGGGAGGCGAGAAAATTAAAACAT 59.230 37.500 0.00 0.00 0.00 2.71
502 504 6.586082 CGAGAAAATTAAAACATGGAGGTTGG 59.414 38.462 0.00 0.00 0.00 3.77
515 517 3.330701 TGGAGGTTGGATAAAGCACTCTT 59.669 43.478 0.00 0.00 38.81 2.85
519 521 5.574188 AGGTTGGATAAAGCACTCTTTCAT 58.426 37.500 0.00 0.00 41.34 2.57
595 597 2.885266 GGGAGGTGAGAAGAACCAAAAC 59.115 50.000 0.00 0.00 40.40 2.43
792 795 0.611896 CCAAGGTTCGAAGGCCCATT 60.612 55.000 0.00 0.00 0.00 3.16
807 810 0.243636 CCATTCAAAGTGGCCCGTTC 59.756 55.000 0.00 0.00 0.00 3.95
822 825 2.943033 CCCGTTCAGTCCATATCCAAAC 59.057 50.000 0.00 0.00 0.00 2.93
823 826 2.943033 CCGTTCAGTCCATATCCAAACC 59.057 50.000 0.00 0.00 0.00 3.27
824 827 2.943033 CGTTCAGTCCATATCCAAACCC 59.057 50.000 0.00 0.00 0.00 4.11
825 828 3.288092 GTTCAGTCCATATCCAAACCCC 58.712 50.000 0.00 0.00 0.00 4.95
826 829 1.850345 TCAGTCCATATCCAAACCCCC 59.150 52.381 0.00 0.00 0.00 5.40
828 831 2.244769 CAGTCCATATCCAAACCCCCTT 59.755 50.000 0.00 0.00 0.00 3.95
829 832 2.933139 AGTCCATATCCAAACCCCCTTT 59.067 45.455 0.00 0.00 0.00 3.11
831 834 3.052869 GTCCATATCCAAACCCCCTTTCT 60.053 47.826 0.00 0.00 0.00 2.52
833 836 3.205282 CCATATCCAAACCCCCTTTCTCT 59.795 47.826 0.00 0.00 0.00 3.10
834 837 4.464947 CATATCCAAACCCCCTTTCTCTC 58.535 47.826 0.00 0.00 0.00 3.20
835 838 2.133858 TCCAAACCCCCTTTCTCTCT 57.866 50.000 0.00 0.00 0.00 3.10
836 839 1.985895 TCCAAACCCCCTTTCTCTCTC 59.014 52.381 0.00 0.00 0.00 3.20
837 840 1.004862 CCAAACCCCCTTTCTCTCTCC 59.995 57.143 0.00 0.00 0.00 3.71
838 841 1.988846 CAAACCCCCTTTCTCTCTCCT 59.011 52.381 0.00 0.00 0.00 3.69
839 842 1.662686 AACCCCCTTTCTCTCTCCTG 58.337 55.000 0.00 0.00 0.00 3.86
840 843 0.494095 ACCCCCTTTCTCTCTCCTGT 59.506 55.000 0.00 0.00 0.00 4.00
845 848 1.889829 CCTTTCTCTCTCCTGTGTCGT 59.110 52.381 0.00 0.00 0.00 4.34
1085 1092 0.041238 TGACCACCGAATCCCTCTCT 59.959 55.000 0.00 0.00 0.00 3.10
1164 1171 7.745022 AACGCATCAATCTGTGATTATTTTG 57.255 32.000 0.00 0.00 45.13 2.44
1235 1242 4.070630 TGGGGCACAGAATTTTTCTTTG 57.929 40.909 0.00 0.20 39.78 2.77
1295 1302 1.656818 CCATGTAAACTGGCAGCGGG 61.657 60.000 15.89 1.91 0.00 6.13
1351 1358 1.273606 CGGGATCGAGGCATATCAAGT 59.726 52.381 0.00 0.00 39.00 3.16
1432 1439 4.826274 TTTCTCTGGGTGTGAATCTAGG 57.174 45.455 0.00 0.00 0.00 3.02
1438 1445 1.202818 GGGTGTGAATCTAGGCCATCC 60.203 57.143 5.01 0.00 0.00 3.51
1479 1486 0.032952 GCGTGGAAGTACAGTGGTCA 59.967 55.000 0.00 0.00 0.00 4.02
1480 1487 1.935300 GCGTGGAAGTACAGTGGTCAG 60.935 57.143 0.00 0.00 0.00 3.51
1481 1488 1.340248 CGTGGAAGTACAGTGGTCAGT 59.660 52.381 0.00 0.00 0.00 3.41
1482 1489 2.755650 GTGGAAGTACAGTGGTCAGTG 58.244 52.381 4.41 4.41 37.75 3.66
1483 1490 2.102588 GTGGAAGTACAGTGGTCAGTGT 59.897 50.000 14.77 14.77 45.98 3.55
1484 1491 2.769663 TGGAAGTACAGTGGTCAGTGTT 59.230 45.455 15.47 0.00 41.91 3.32
1485 1492 3.962063 TGGAAGTACAGTGGTCAGTGTTA 59.038 43.478 15.47 1.63 41.91 2.41
1486 1493 4.038763 TGGAAGTACAGTGGTCAGTGTTAG 59.961 45.833 15.47 0.00 41.91 2.34
1487 1494 4.280174 GGAAGTACAGTGGTCAGTGTTAGA 59.720 45.833 15.47 0.00 41.91 2.10
1488 1495 5.455056 AAGTACAGTGGTCAGTGTTAGAG 57.545 43.478 15.47 0.00 41.91 2.43
1489 1496 4.471548 AGTACAGTGGTCAGTGTTAGAGT 58.528 43.478 15.47 0.32 41.91 3.24
1490 1497 4.894114 AGTACAGTGGTCAGTGTTAGAGTT 59.106 41.667 15.47 0.00 41.91 3.01
1491 1498 6.066690 AGTACAGTGGTCAGTGTTAGAGTTA 58.933 40.000 15.47 0.00 41.91 2.24
1492 1499 6.720288 AGTACAGTGGTCAGTGTTAGAGTTAT 59.280 38.462 15.47 0.00 41.91 1.89
1493 1500 7.886970 AGTACAGTGGTCAGTGTTAGAGTTATA 59.113 37.037 15.47 0.00 41.91 0.98
1494 1501 7.534723 ACAGTGGTCAGTGTTAGAGTTATAA 57.465 36.000 5.68 0.00 41.91 0.98
1495 1502 8.135382 ACAGTGGTCAGTGTTAGAGTTATAAT 57.865 34.615 5.68 0.00 41.91 1.28
1496 1503 9.251440 ACAGTGGTCAGTGTTAGAGTTATAATA 57.749 33.333 5.68 0.00 41.91 0.98
1517 1524 9.793259 ATAATATAAGTCATGTGTACCCCTTTG 57.207 33.333 0.00 0.00 0.00 2.77
1518 1525 3.876309 AAGTCATGTGTACCCCTTTGT 57.124 42.857 0.00 0.00 0.00 2.83
1519 1526 4.986054 AAGTCATGTGTACCCCTTTGTA 57.014 40.909 0.00 0.00 0.00 2.41
1520 1527 5.514500 AAGTCATGTGTACCCCTTTGTAT 57.486 39.130 0.00 0.00 0.00 2.29
1521 1528 5.514500 AGTCATGTGTACCCCTTTGTATT 57.486 39.130 0.00 0.00 0.00 1.89
1522 1529 5.887754 AGTCATGTGTACCCCTTTGTATTT 58.112 37.500 0.00 0.00 0.00 1.40
1523 1530 7.023171 AGTCATGTGTACCCCTTTGTATTTA 57.977 36.000 0.00 0.00 0.00 1.40
1524 1531 7.639378 AGTCATGTGTACCCCTTTGTATTTAT 58.361 34.615 0.00 0.00 0.00 1.40
1525 1532 7.773690 AGTCATGTGTACCCCTTTGTATTTATC 59.226 37.037 0.00 0.00 0.00 1.75
1526 1533 7.773690 GTCATGTGTACCCCTTTGTATTTATCT 59.226 37.037 0.00 0.00 0.00 1.98
1527 1534 7.990886 TCATGTGTACCCCTTTGTATTTATCTC 59.009 37.037 0.00 0.00 0.00 2.75
1528 1535 6.342906 TGTGTACCCCTTTGTATTTATCTCG 58.657 40.000 0.00 0.00 0.00 4.04
1529 1536 6.070653 TGTGTACCCCTTTGTATTTATCTCGT 60.071 38.462 0.00 0.00 0.00 4.18
1530 1537 7.123997 TGTGTACCCCTTTGTATTTATCTCGTA 59.876 37.037 0.00 0.00 0.00 3.43
1531 1538 7.650903 GTGTACCCCTTTGTATTTATCTCGTAG 59.349 40.741 0.00 0.00 0.00 3.51
1532 1539 6.803366 ACCCCTTTGTATTTATCTCGTAGT 57.197 37.500 0.00 0.00 0.00 2.73
1533 1540 7.902920 ACCCCTTTGTATTTATCTCGTAGTA 57.097 36.000 0.00 0.00 0.00 1.82
1534 1541 8.488308 ACCCCTTTGTATTTATCTCGTAGTAT 57.512 34.615 0.00 0.00 0.00 2.12
1535 1542 9.592196 ACCCCTTTGTATTTATCTCGTAGTATA 57.408 33.333 0.00 0.00 0.00 1.47
1541 1548 9.592196 TTGTATTTATCTCGTAGTATAAGGGGT 57.408 33.333 0.00 0.00 0.00 4.95
1542 1549 9.592196 TGTATTTATCTCGTAGTATAAGGGGTT 57.408 33.333 0.00 0.00 0.00 4.11
1545 1552 7.530426 TTATCTCGTAGTATAAGGGGTTTCC 57.470 40.000 0.00 0.00 0.00 3.13
1556 1563 3.577805 AGGGGTTTCCTGCATATGTAC 57.422 47.619 4.29 0.00 46.07 2.90
1557 1564 2.174854 AGGGGTTTCCTGCATATGTACC 59.825 50.000 4.29 0.00 46.07 3.34
1558 1565 2.092103 GGGGTTTCCTGCATATGTACCA 60.092 50.000 4.29 0.00 0.00 3.25
1559 1566 2.949644 GGGTTTCCTGCATATGTACCAC 59.050 50.000 4.29 0.00 0.00 4.16
1560 1567 3.616219 GGTTTCCTGCATATGTACCACA 58.384 45.455 4.29 0.00 0.00 4.17
1561 1568 3.377172 GGTTTCCTGCATATGTACCACAC 59.623 47.826 4.29 0.00 0.00 3.82
1562 1569 3.275617 TTCCTGCATATGTACCACACC 57.724 47.619 4.29 0.00 0.00 4.16
1563 1570 2.477245 TCCTGCATATGTACCACACCT 58.523 47.619 4.29 0.00 0.00 4.00
1564 1571 2.170397 TCCTGCATATGTACCACACCTG 59.830 50.000 4.29 0.00 0.00 4.00
1565 1572 2.092968 CCTGCATATGTACCACACCTGT 60.093 50.000 4.29 0.00 0.00 4.00
1566 1573 3.133901 CCTGCATATGTACCACACCTGTA 59.866 47.826 4.29 0.00 0.00 2.74
1567 1574 4.119862 CTGCATATGTACCACACCTGTAC 58.880 47.826 4.29 0.00 39.19 2.90
1577 1584 8.715190 TGTACCACACCTGTACATGTATATAT 57.285 34.615 9.18 0.00 42.58 0.86
1578 1585 9.810870 TGTACCACACCTGTACATGTATATATA 57.189 33.333 9.18 0.00 42.58 0.86
1581 1588 8.683615 ACCACACCTGTACATGTATATATATCG 58.316 37.037 9.18 0.00 0.00 2.92
1582 1589 8.135529 CCACACCTGTACATGTATATATATCGG 58.864 40.741 9.18 5.41 0.00 4.18
1583 1590 7.648112 CACACCTGTACATGTATATATATCGGC 59.352 40.741 9.18 0.00 0.00 5.54
1584 1591 7.145985 CACCTGTACATGTATATATATCGGCC 58.854 42.308 9.18 0.00 0.00 6.13
1585 1592 7.014326 CACCTGTACATGTATATATATCGGCCT 59.986 40.741 9.18 0.00 0.00 5.19
1586 1593 8.222637 ACCTGTACATGTATATATATCGGCCTA 58.777 37.037 9.18 0.00 0.00 3.93
1587 1594 9.244292 CCTGTACATGTATATATATCGGCCTAT 57.756 37.037 9.18 0.00 0.00 2.57
1589 1596 9.020731 TGTACATGTATATATATCGGCCTATGG 57.979 37.037 9.18 0.00 0.00 2.74
1601 1608 2.907458 GCCTATGGCCTTATGGGAAT 57.093 50.000 9.43 0.00 44.06 3.01
1603 1610 3.621558 GCCTATGGCCTTATGGGAATAC 58.378 50.000 9.43 0.00 44.06 1.89
1604 1611 3.010138 GCCTATGGCCTTATGGGAATACA 59.990 47.826 9.43 0.00 44.06 2.29
1605 1612 4.508405 GCCTATGGCCTTATGGGAATACAA 60.508 45.833 9.43 0.00 44.06 2.41
1606 1613 5.256474 CCTATGGCCTTATGGGAATACAAG 58.744 45.833 3.32 0.00 37.23 3.16
1607 1614 4.814224 ATGGCCTTATGGGAATACAAGT 57.186 40.909 3.32 0.00 37.23 3.16
1608 1615 4.601406 TGGCCTTATGGGAATACAAGTT 57.399 40.909 3.32 0.00 37.23 2.66
1609 1616 4.277476 TGGCCTTATGGGAATACAAGTTG 58.723 43.478 3.32 0.00 37.23 3.16
1610 1617 3.068165 GGCCTTATGGGAATACAAGTTGC 59.932 47.826 1.81 0.00 37.23 4.17
1611 1618 3.954258 GCCTTATGGGAATACAAGTTGCT 59.046 43.478 1.81 0.00 37.23 3.91
1612 1619 4.402474 GCCTTATGGGAATACAAGTTGCTT 59.598 41.667 1.81 0.00 37.23 3.91
1613 1620 5.592688 GCCTTATGGGAATACAAGTTGCTTA 59.407 40.000 1.81 0.00 37.23 3.09
1614 1621 6.265422 GCCTTATGGGAATACAAGTTGCTTAT 59.735 38.462 1.81 0.00 37.23 1.73
1615 1622 7.201911 GCCTTATGGGAATACAAGTTGCTTATT 60.202 37.037 1.81 0.58 37.23 1.40
1616 1623 8.352942 CCTTATGGGAATACAAGTTGCTTATTC 58.647 37.037 13.88 13.88 37.23 1.75
1617 1624 6.715347 ATGGGAATACAAGTTGCTTATTCC 57.285 37.500 24.35 24.35 43.17 3.01
1618 1625 5.826643 TGGGAATACAAGTTGCTTATTCCT 58.173 37.500 27.77 4.94 43.33 3.36
1619 1626 6.964464 TGGGAATACAAGTTGCTTATTCCTA 58.036 36.000 27.77 23.73 43.33 2.94
1620 1627 7.406916 TGGGAATACAAGTTGCTTATTCCTAA 58.593 34.615 27.77 19.95 43.33 2.69
1621 1628 7.338449 TGGGAATACAAGTTGCTTATTCCTAAC 59.662 37.037 27.77 19.00 43.33 2.34
1622 1629 7.338449 GGGAATACAAGTTGCTTATTCCTAACA 59.662 37.037 27.77 0.00 43.33 2.41
1623 1630 8.903820 GGAATACAAGTTGCTTATTCCTAACAT 58.096 33.333 24.74 0.00 41.60 2.71
1624 1631 9.722056 GAATACAAGTTGCTTATTCCTAACATG 57.278 33.333 1.81 0.00 0.00 3.21
1625 1632 6.515272 ACAAGTTGCTTATTCCTAACATGG 57.485 37.500 1.81 0.00 0.00 3.66
1626 1633 6.010219 ACAAGTTGCTTATTCCTAACATGGT 58.990 36.000 1.81 0.00 0.00 3.55
1627 1634 7.172342 ACAAGTTGCTTATTCCTAACATGGTA 58.828 34.615 1.81 0.00 0.00 3.25
1628 1635 7.834181 ACAAGTTGCTTATTCCTAACATGGTAT 59.166 33.333 1.81 0.00 0.00 2.73
1629 1636 8.686334 CAAGTTGCTTATTCCTAACATGGTATT 58.314 33.333 0.00 0.00 0.00 1.89
1630 1637 9.914834 AAGTTGCTTATTCCTAACATGGTATTA 57.085 29.630 0.00 0.00 0.00 0.98
1631 1638 9.561069 AGTTGCTTATTCCTAACATGGTATTAG 57.439 33.333 0.00 0.00 0.00 1.73
1632 1639 9.555727 GTTGCTTATTCCTAACATGGTATTAGA 57.444 33.333 0.00 0.00 32.31 2.10
1633 1640 9.778741 TTGCTTATTCCTAACATGGTATTAGAG 57.221 33.333 0.00 0.00 32.31 2.43
1634 1641 7.878127 TGCTTATTCCTAACATGGTATTAGAGC 59.122 37.037 0.00 1.28 32.31 4.09
1635 1642 8.097662 GCTTATTCCTAACATGGTATTAGAGCT 58.902 37.037 0.00 0.00 32.31 4.09
1638 1645 7.540474 TTCCTAACATGGTATTAGAGCTAGG 57.460 40.000 0.00 0.00 32.31 3.02
1639 1646 6.621394 TCCTAACATGGTATTAGAGCTAGGT 58.379 40.000 0.00 0.00 32.31 3.08
1640 1647 6.720288 TCCTAACATGGTATTAGAGCTAGGTC 59.280 42.308 14.19 14.19 32.31 3.85
1641 1648 6.493802 CCTAACATGGTATTAGAGCTAGGTCA 59.506 42.308 23.18 4.56 32.31 4.02
1642 1649 6.808321 AACATGGTATTAGAGCTAGGTCAA 57.192 37.500 23.18 15.02 0.00 3.18
1643 1650 7.380423 AACATGGTATTAGAGCTAGGTCAAT 57.620 36.000 23.18 19.82 0.00 2.57
1644 1651 7.380423 ACATGGTATTAGAGCTAGGTCAATT 57.620 36.000 23.18 9.70 0.00 2.32
1645 1652 7.806180 ACATGGTATTAGAGCTAGGTCAATTT 58.194 34.615 23.18 5.73 0.00 1.82
1646 1653 8.275040 ACATGGTATTAGAGCTAGGTCAATTTT 58.725 33.333 23.18 5.36 0.00 1.82
1647 1654 9.125026 CATGGTATTAGAGCTAGGTCAATTTTT 57.875 33.333 23.18 4.64 0.00 1.94
1678 1685 4.768659 CAACTCGTGCTATTGATCTGTC 57.231 45.455 0.00 0.00 0.00 3.51
1679 1686 3.444703 ACTCGTGCTATTGATCTGTCC 57.555 47.619 0.00 0.00 0.00 4.02
1680 1687 2.101582 ACTCGTGCTATTGATCTGTCCC 59.898 50.000 0.00 0.00 0.00 4.46
1681 1688 1.067060 TCGTGCTATTGATCTGTCCCG 59.933 52.381 0.00 0.00 0.00 5.14
1682 1689 1.067060 CGTGCTATTGATCTGTCCCGA 59.933 52.381 0.00 0.00 0.00 5.14
1683 1690 2.288457 CGTGCTATTGATCTGTCCCGAT 60.288 50.000 0.00 0.00 0.00 4.18
1684 1691 3.321497 GTGCTATTGATCTGTCCCGATC 58.679 50.000 0.00 0.00 40.13 3.69
1685 1692 2.029918 TGCTATTGATCTGTCCCGATCG 60.030 50.000 8.51 8.51 42.10 3.69
1686 1693 2.229062 GCTATTGATCTGTCCCGATCGA 59.771 50.000 18.66 0.00 42.10 3.59
1687 1694 3.671971 GCTATTGATCTGTCCCGATCGAG 60.672 52.174 18.66 2.49 42.10 4.04
1688 1695 1.763968 TTGATCTGTCCCGATCGAGT 58.236 50.000 18.66 0.00 42.10 4.18
1689 1696 1.309950 TGATCTGTCCCGATCGAGTC 58.690 55.000 18.66 0.92 42.10 3.36
1714 1721 4.500116 GTCGCCGTCCTCCTGCTC 62.500 72.222 0.00 0.00 0.00 4.26
1717 1724 3.760035 GCCGTCCTCCTGCTCGAA 61.760 66.667 0.00 0.00 0.00 3.71
1718 1725 2.492090 CCGTCCTCCTGCTCGAAG 59.508 66.667 0.00 0.00 0.00 3.79
1719 1726 2.344203 CCGTCCTCCTGCTCGAAGT 61.344 63.158 0.00 0.00 0.00 3.01
1720 1727 1.137825 CGTCCTCCTGCTCGAAGTC 59.862 63.158 0.00 0.00 0.00 3.01
1721 1728 1.137825 GTCCTCCTGCTCGAAGTCG 59.862 63.158 0.00 0.00 41.45 4.18
1722 1729 1.303398 TCCTCCTGCTCGAAGTCGT 60.303 57.895 0.00 0.00 40.80 4.34
1723 1730 1.137825 CCTCCTGCTCGAAGTCGTC 59.862 63.158 0.00 0.00 40.80 4.20
1740 1747 4.838486 CGTCGACTGCGGCTCCTC 62.838 72.222 14.70 0.00 40.67 3.71
1741 1748 4.500116 GTCGACTGCGGCTCCTCC 62.500 72.222 8.70 0.00 39.48 4.30
1750 1757 4.214327 GGCTCCTCCCGCTCGAAG 62.214 72.222 0.00 0.00 0.00 3.79
1751 1758 4.882396 GCTCCTCCCGCTCGAAGC 62.882 72.222 0.00 0.00 38.02 3.86
1752 1759 3.144193 CTCCTCCCGCTCGAAGCT 61.144 66.667 5.53 0.00 39.60 3.74
1753 1760 3.132481 CTCCTCCCGCTCGAAGCTC 62.132 68.421 0.00 0.00 39.60 4.09
1754 1761 4.214327 CCTCCCGCTCGAAGCTCC 62.214 72.222 0.00 0.00 39.60 4.70
1755 1762 4.214327 CTCCCGCTCGAAGCTCCC 62.214 72.222 0.00 0.00 39.60 4.30
1756 1763 4.761058 TCCCGCTCGAAGCTCCCT 62.761 66.667 0.00 0.00 39.60 4.20
1757 1764 4.214327 CCCGCTCGAAGCTCCCTC 62.214 72.222 0.00 0.00 39.60 4.30
1758 1765 4.214327 CCGCTCGAAGCTCCCTCC 62.214 72.222 0.00 0.00 39.60 4.30
1759 1766 4.214327 CGCTCGAAGCTCCCTCCC 62.214 72.222 0.00 0.00 39.60 4.30
1760 1767 4.214327 GCTCGAAGCTCCCTCCCG 62.214 72.222 0.00 0.00 38.45 5.14
1761 1768 4.214327 CTCGAAGCTCCCTCCCGC 62.214 72.222 0.00 0.00 0.00 6.13
1762 1769 4.761058 TCGAAGCTCCCTCCCGCT 62.761 66.667 0.00 0.00 38.30 5.52
1763 1770 4.214327 CGAAGCTCCCTCCCGCTC 62.214 72.222 0.00 0.00 34.96 5.03
1764 1771 3.855853 GAAGCTCCCTCCCGCTCC 61.856 72.222 0.00 0.00 34.96 4.70
1801 1808 4.856607 GGAGTCGGCCGCTCGAAG 62.857 72.222 30.06 4.59 41.05 3.79
1808 1815 4.882396 GCCGCTCGAAGCTCCCTC 62.882 72.222 0.00 0.00 39.60 4.30
1809 1816 4.214327 CCGCTCGAAGCTCCCTCC 62.214 72.222 0.00 0.00 39.60 4.30
1810 1817 4.214327 CGCTCGAAGCTCCCTCCC 62.214 72.222 0.00 0.00 39.60 4.30
1811 1818 4.214327 GCTCGAAGCTCCCTCCCG 62.214 72.222 0.00 0.00 38.45 5.14
1812 1819 4.214327 CTCGAAGCTCCCTCCCGC 62.214 72.222 0.00 0.00 0.00 6.13
1813 1820 4.761058 TCGAAGCTCCCTCCCGCT 62.761 66.667 0.00 0.00 38.30 5.52
1814 1821 4.214327 CGAAGCTCCCTCCCGCTC 62.214 72.222 0.00 0.00 34.96 5.03
1815 1822 3.855853 GAAGCTCCCTCCCGCTCC 61.856 72.222 0.00 0.00 34.96 4.70
1862 1871 4.803426 CGCTCCCGCTCGAAGCTT 62.803 66.667 0.00 0.00 39.60 3.74
2043 2082 3.007323 GTACCCGGGTGGCTCCTT 61.007 66.667 36.97 9.06 37.83 3.36
2050 2089 2.359975 GGTGGCTCCTTCCCGTTG 60.360 66.667 0.00 0.00 0.00 4.10
2072 2118 4.527583 GCCAGGCTCCTCTGCTCG 62.528 72.222 3.29 0.00 33.64 5.03
2074 2120 2.784356 CCAGGCTCCTCTGCTCGAG 61.784 68.421 8.45 8.45 39.57 4.04
2080 2126 2.441901 CCTCTGCTCGAGCCCTCT 60.442 66.667 33.23 0.00 41.18 3.69
2091 2138 4.388499 GCCCTCTCGCCGGTTCAA 62.388 66.667 1.90 0.00 0.00 2.69
2094 2141 1.521681 CCTCTCGCCGGTTCAATCC 60.522 63.158 1.90 0.00 0.00 3.01
2136 2193 3.367703 GGTTTGTCCTCGTTCGGATCTTA 60.368 47.826 0.00 0.00 35.11 2.10
2302 2372 4.357947 GTCTGCTGTCCGCCACGA 62.358 66.667 0.00 0.00 38.05 4.35
2405 2475 0.107508 GGTTGCTGATGAGGCTGCTA 60.108 55.000 0.00 0.00 34.32 3.49
2899 2969 0.324614 TCATGGAGGCGCTTTCAGAA 59.675 50.000 6.66 0.00 0.00 3.02
2984 3054 1.279271 CTCGGGTTTCTTCCACTCCAT 59.721 52.381 0.00 0.00 0.00 3.41
3000 3070 4.479993 ATCTGCTGCACCGCCTCC 62.480 66.667 0.00 0.00 0.00 4.30
3043 3113 0.768221 TCTTGCCCACTCCTTCTGGT 60.768 55.000 0.00 0.00 34.23 4.00
3051 3121 3.672295 CTCCTTCTGGTGGCTCCGC 62.672 68.421 0.53 0.00 39.52 5.54
3106 3177 5.651612 ATGATGGTCATATTGAGTCCCAA 57.348 39.130 0.00 0.00 34.88 4.12
3235 3312 2.811317 CGTCTGCTCGTGGCTTCC 60.811 66.667 5.00 0.00 42.39 3.46
3309 3386 1.535687 ACCCGCCCTCTACACAGTT 60.536 57.895 0.00 0.00 0.00 3.16
3639 3722 4.508128 TCGCCGCCGTGATTCTCC 62.508 66.667 0.00 0.00 35.54 3.71
3761 3844 2.292267 GGCATCATCGACTTGGTCATT 58.708 47.619 0.00 0.00 32.09 2.57
3795 3878 6.036408 TCTCGATTATCGTCTTTAGTTCGTCA 59.964 38.462 14.47 0.00 41.35 4.35
4021 4104 6.811253 TCTCGTTACACATGGCTTTATTTT 57.189 33.333 0.00 0.00 0.00 1.82
4427 4511 2.017782 TGCTTCGCTTGTTTGGTTGTA 58.982 42.857 0.00 0.00 0.00 2.41
4527 4613 3.906218 AGTGATGAGCATAAGGGCTATCA 59.094 43.478 0.00 0.00 45.99 2.15
4538 4624 3.979501 AGGGCTATCATTGTTGGGATT 57.020 42.857 0.00 0.00 0.00 3.01
4903 4989 1.599047 CCGACCTGTGGATGCTTCT 59.401 57.895 0.00 0.00 0.00 2.85
4912 4998 3.760151 CTGTGGATGCTTCTTTGGATGAA 59.240 43.478 0.00 0.00 0.00 2.57
4924 5010 4.467795 TCTTTGGATGAATCGTCCTCTTCT 59.532 41.667 20.95 0.00 40.04 2.85
4934 5020 1.548269 CGTCCTCTTCTTCTCAGCCTT 59.452 52.381 0.00 0.00 0.00 4.35
4956 5042 2.442212 TATGGTTTGCGTTCTCGTCA 57.558 45.000 0.00 0.00 39.49 4.35
4970 5056 1.534163 CTCGTCATCGTCCGCCTATTA 59.466 52.381 0.00 0.00 38.33 0.98
5980 6070 1.940613 GCTCCCACATCGGTTCATTAC 59.059 52.381 0.00 0.00 0.00 1.89
6198 6290 0.878523 CAGTTTCCCGTTCGAGTGCA 60.879 55.000 0.00 0.00 0.00 4.57
6687 6785 8.863872 AATACAAGTTGCTTATTCCTAACAGT 57.136 30.769 1.81 0.00 0.00 3.55
6688 6786 6.803154 ACAAGTTGCTTATTCCTAACAGTC 57.197 37.500 1.81 0.00 0.00 3.51
6753 6851 8.947304 TTTGTTTGTCATTTTCTTCTTTTTGC 57.053 26.923 0.00 0.00 0.00 3.68
6791 6889 3.823304 GCTTTCCTCCTGTTCTGTTTGAT 59.177 43.478 0.00 0.00 0.00 2.57
6872 6970 6.001449 AGATTGGCTACATTGCTAACCTAA 57.999 37.500 0.00 0.00 36.31 2.69
6892 6990 0.675083 TGCAAAACCAGTGAGGCATG 59.325 50.000 0.00 0.00 43.14 4.06
7260 7358 9.516314 AATAAGTTGTTTTCCTTTTCTCTTTCG 57.484 29.630 0.00 0.00 0.00 3.46
7582 7680 0.036010 AGAGATGGAACGTGCCAAGG 60.036 55.000 21.97 0.00 42.16 3.61
7583 7681 0.036388 GAGATGGAACGTGCCAAGGA 60.036 55.000 21.97 0.00 42.16 3.36
7623 7721 1.006571 GCAAGCAGCAATGCAGTGT 60.007 52.632 16.47 0.00 44.79 3.55
7775 7873 9.941325 CTCTGCACTATATCTCTTTCCATAAAT 57.059 33.333 0.00 0.00 0.00 1.40
7776 7874 9.935241 TCTGCACTATATCTCTTTCCATAAATC 57.065 33.333 0.00 0.00 0.00 2.17
7797 7895 6.726490 ATCATTTTTGCCTTGCTCAGATAT 57.274 33.333 0.00 0.00 0.00 1.63
8084 8182 5.179452 AGTTTCAGCTATTTGAGGCCTTA 57.821 39.130 6.77 0.00 0.00 2.69
8108 8206 0.839946 ATGCAAGACGCTTAGGGGAT 59.160 50.000 0.55 0.00 43.06 3.85
8134 8232 9.640963 TGTGCTTAGAGAAATAAACTAGTCTTC 57.359 33.333 0.00 0.00 0.00 2.87
8146 8244 5.562298 AACTAGTCTTCCTTTAAGCACCA 57.438 39.130 0.00 0.00 34.97 4.17
8147 8245 4.895961 ACTAGTCTTCCTTTAAGCACCAC 58.104 43.478 0.00 0.00 34.97 4.16
8150 8248 2.226674 GTCTTCCTTTAAGCACCACTGC 59.773 50.000 0.00 0.00 44.63 4.40
8164 8262 3.440173 CACCACTGCTTATTTGTACAGGG 59.560 47.826 0.00 0.00 34.40 4.45
8202 8300 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
8225 8323 5.464168 CACTGGTGCTTTAGAAAAATCCAG 58.536 41.667 0.00 0.00 40.15 3.86
8267 8365 2.880890 GCATTGTACAAGGCCTGATAGG 59.119 50.000 29.85 0.00 41.71 2.57
8268 8366 3.433598 GCATTGTACAAGGCCTGATAGGA 60.434 47.826 29.85 0.00 41.71 2.94
8318 8416 5.863935 AGTTTTCGCATTTCAAAATAGGCTC 59.136 36.000 0.00 0.00 0.00 4.70
8319 8417 5.643379 TTTCGCATTTCAAAATAGGCTCT 57.357 34.783 0.00 0.00 0.00 4.09
8321 8419 5.235305 TCGCATTTCAAAATAGGCTCTTC 57.765 39.130 0.00 0.00 0.00 2.87
8322 8420 4.943705 TCGCATTTCAAAATAGGCTCTTCT 59.056 37.500 0.00 0.00 0.00 2.85
8323 8421 5.065218 TCGCATTTCAAAATAGGCTCTTCTC 59.935 40.000 0.00 0.00 0.00 2.87
8324 8422 5.065731 CGCATTTCAAAATAGGCTCTTCTCT 59.934 40.000 0.00 0.00 0.00 3.10
8325 8423 6.264088 GCATTTCAAAATAGGCTCTTCTCTG 58.736 40.000 0.00 0.00 0.00 3.35
8326 8424 6.679884 GCATTTCAAAATAGGCTCTTCTCTGG 60.680 42.308 0.00 0.00 0.00 3.86
8327 8425 5.505181 TTCAAAATAGGCTCTTCTCTGGT 57.495 39.130 0.00 0.00 0.00 4.00
8328 8426 6.620877 TTCAAAATAGGCTCTTCTCTGGTA 57.379 37.500 0.00 0.00 0.00 3.25
8329 8427 6.227298 TCAAAATAGGCTCTTCTCTGGTAG 57.773 41.667 0.00 0.00 0.00 3.18
8330 8428 5.721960 TCAAAATAGGCTCTTCTCTGGTAGT 59.278 40.000 0.00 0.00 0.00 2.73
8331 8429 5.862678 AAATAGGCTCTTCTCTGGTAGTC 57.137 43.478 0.00 0.00 0.00 2.59
8332 8430 2.909504 AGGCTCTTCTCTGGTAGTCA 57.090 50.000 0.00 0.00 0.00 3.41
8333 8431 3.396685 AGGCTCTTCTCTGGTAGTCAT 57.603 47.619 0.00 0.00 0.00 3.06
8334 8432 3.718723 AGGCTCTTCTCTGGTAGTCATT 58.281 45.455 0.00 0.00 0.00 2.57
8335 8433 3.450457 AGGCTCTTCTCTGGTAGTCATTG 59.550 47.826 0.00 0.00 0.00 2.82
8336 8434 3.431486 GGCTCTTCTCTGGTAGTCATTGG 60.431 52.174 0.00 0.00 0.00 3.16
8337 8435 3.791245 CTCTTCTCTGGTAGTCATTGGC 58.209 50.000 0.00 0.00 0.00 4.52
8338 8436 3.173151 TCTTCTCTGGTAGTCATTGGCA 58.827 45.455 0.00 0.00 0.00 4.92
8339 8437 3.196469 TCTTCTCTGGTAGTCATTGGCAG 59.804 47.826 0.00 0.00 0.00 4.85
8340 8438 2.540383 TCTCTGGTAGTCATTGGCAGT 58.460 47.619 0.00 0.00 0.00 4.40
8341 8439 2.234661 TCTCTGGTAGTCATTGGCAGTG 59.765 50.000 3.22 3.22 0.00 3.66
8342 8440 1.977854 TCTGGTAGTCATTGGCAGTGT 59.022 47.619 9.95 0.00 0.00 3.55
8343 8441 2.079158 CTGGTAGTCATTGGCAGTGTG 58.921 52.381 9.95 0.26 0.00 3.82
8344 8442 1.419762 TGGTAGTCATTGGCAGTGTGT 59.580 47.619 9.95 1.43 0.00 3.72
8345 8443 2.635427 TGGTAGTCATTGGCAGTGTGTA 59.365 45.455 9.95 0.51 0.00 2.90
8346 8444 3.263170 TGGTAGTCATTGGCAGTGTGTAT 59.737 43.478 9.95 0.00 0.00 2.29
8347 8445 3.623060 GGTAGTCATTGGCAGTGTGTATG 59.377 47.826 9.95 0.00 0.00 2.39
8348 8446 2.715046 AGTCATTGGCAGTGTGTATGG 58.285 47.619 9.95 0.00 0.00 2.74
8349 8447 2.040278 AGTCATTGGCAGTGTGTATGGT 59.960 45.455 9.95 0.00 0.00 3.55
8350 8448 2.162208 GTCATTGGCAGTGTGTATGGTG 59.838 50.000 9.95 0.00 0.00 4.17
8351 8449 2.161855 CATTGGCAGTGTGTATGGTGT 58.838 47.619 1.24 0.00 0.00 4.16
8352 8450 1.603456 TTGGCAGTGTGTATGGTGTG 58.397 50.000 0.00 0.00 0.00 3.82
8353 8451 0.761802 TGGCAGTGTGTATGGTGTGA 59.238 50.000 0.00 0.00 0.00 3.58
8354 8452 1.350684 TGGCAGTGTGTATGGTGTGAT 59.649 47.619 0.00 0.00 0.00 3.06
8355 8453 2.009774 GGCAGTGTGTATGGTGTGATC 58.990 52.381 0.00 0.00 0.00 2.92
8356 8454 2.009774 GCAGTGTGTATGGTGTGATCC 58.990 52.381 0.00 0.00 0.00 3.36
8357 8455 2.615240 GCAGTGTGTATGGTGTGATCCA 60.615 50.000 0.00 0.00 42.01 3.41
8359 8457 4.264253 CAGTGTGTATGGTGTGATCCATT 58.736 43.478 3.55 0.00 44.75 3.16
8360 8458 5.427378 CAGTGTGTATGGTGTGATCCATTA 58.573 41.667 3.55 0.00 44.75 1.90
8361 8459 6.057533 CAGTGTGTATGGTGTGATCCATTAT 58.942 40.000 3.55 0.00 44.75 1.28
8362 8460 6.203530 CAGTGTGTATGGTGTGATCCATTATC 59.796 42.308 3.55 0.00 44.75 1.75
8363 8461 6.054941 GTGTGTATGGTGTGATCCATTATCA 58.945 40.000 3.55 0.00 44.75 2.15
8364 8462 6.712095 GTGTGTATGGTGTGATCCATTATCAT 59.288 38.462 3.55 0.00 46.21 2.45
8365 8463 7.229306 GTGTGTATGGTGTGATCCATTATCATT 59.771 37.037 3.55 0.00 46.21 2.57
8366 8464 8.435982 TGTGTATGGTGTGATCCATTATCATTA 58.564 33.333 3.55 0.00 46.21 1.90
8367 8465 9.283768 GTGTATGGTGTGATCCATTATCATTAA 57.716 33.333 3.55 0.00 46.21 1.40
8368 8466 9.859152 TGTATGGTGTGATCCATTATCATTAAA 57.141 29.630 3.55 0.00 46.21 1.52
8375 8473 9.308000 TGTGATCCATTATCATTAAATTACCCC 57.692 33.333 0.00 0.00 46.21 4.95
8376 8474 8.749354 GTGATCCATTATCATTAAATTACCCCC 58.251 37.037 0.00 0.00 46.21 5.40
8377 8475 8.687180 TGATCCATTATCATTAAATTACCCCCT 58.313 33.333 0.00 0.00 39.77 4.79
8378 8476 9.190317 GATCCATTATCATTAAATTACCCCCTC 57.810 37.037 0.00 0.00 34.46 4.30
8379 8477 7.475299 TCCATTATCATTAAATTACCCCCTCC 58.525 38.462 0.00 0.00 0.00 4.30
8380 8478 6.667848 CCATTATCATTAAATTACCCCCTCCC 59.332 42.308 0.00 0.00 0.00 4.30
8381 8479 4.759793 ATCATTAAATTACCCCCTCCCC 57.240 45.455 0.00 0.00 0.00 4.81
8382 8480 2.792967 TCATTAAATTACCCCCTCCCCC 59.207 50.000 0.00 0.00 0.00 5.40
8399 8497 2.156102 CCCCCTAACTCTTACTCGGT 57.844 55.000 0.00 0.00 0.00 4.69
8400 8498 1.755380 CCCCCTAACTCTTACTCGGTG 59.245 57.143 0.00 0.00 0.00 4.94
8401 8499 1.755380 CCCCTAACTCTTACTCGGTGG 59.245 57.143 0.00 0.00 0.00 4.61
8402 8500 2.454538 CCCTAACTCTTACTCGGTGGT 58.545 52.381 0.00 0.00 0.00 4.16
8403 8501 2.165845 CCCTAACTCTTACTCGGTGGTG 59.834 54.545 0.00 0.00 0.00 4.17
8404 8502 2.165845 CCTAACTCTTACTCGGTGGTGG 59.834 54.545 0.00 0.00 0.00 4.61
8405 8503 2.005370 AACTCTTACTCGGTGGTGGA 57.995 50.000 0.00 0.00 0.00 4.02
8406 8504 1.546961 ACTCTTACTCGGTGGTGGAG 58.453 55.000 0.00 0.00 37.54 3.86
8407 8505 0.173708 CTCTTACTCGGTGGTGGAGC 59.826 60.000 0.00 0.00 34.87 4.70
8414 8721 2.895424 CGGTGGTGGAGCTTCCCTT 61.895 63.158 0.00 0.00 35.03 3.95
8563 9167 4.344968 CCCTCAACATTTTCCTTCAACCTT 59.655 41.667 0.00 0.00 0.00 3.50
8564 9168 5.163311 CCCTCAACATTTTCCTTCAACCTTT 60.163 40.000 0.00 0.00 0.00 3.11
8586 9190 2.762535 TTAGAGGAAAAGGGCTCACG 57.237 50.000 0.00 0.00 0.00 4.35
8587 9191 0.249398 TAGAGGAAAAGGGCTCACGC 59.751 55.000 0.00 0.00 0.00 5.34
8598 9202 4.096003 CTCACGCCCCGGTTCCAT 62.096 66.667 0.00 0.00 0.00 3.41
8599 9203 3.622060 CTCACGCCCCGGTTCCATT 62.622 63.158 0.00 0.00 0.00 3.16
8600 9204 3.439540 CACGCCCCGGTTCCATTG 61.440 66.667 0.00 0.00 0.00 2.82
8603 9207 2.994417 GCCCCGGTTCCATTGCAA 60.994 61.111 0.00 0.00 0.00 4.08
8604 9208 3.005540 GCCCCGGTTCCATTGCAAG 62.006 63.158 4.94 0.00 0.00 4.01
8605 9209 1.304052 CCCCGGTTCCATTGCAAGA 60.304 57.895 4.94 0.00 0.00 3.02
8606 9210 0.897863 CCCCGGTTCCATTGCAAGAA 60.898 55.000 4.94 0.63 0.00 2.52
8607 9211 0.243636 CCCGGTTCCATTGCAAGAAC 59.756 55.000 18.53 18.53 41.34 3.01
8608 9212 0.109781 CCGGTTCCATTGCAAGAACG 60.110 55.000 19.49 15.57 42.67 3.95
8609 9213 0.871722 CGGTTCCATTGCAAGAACGA 59.128 50.000 19.49 4.90 42.67 3.85
8610 9214 1.265635 CGGTTCCATTGCAAGAACGAA 59.734 47.619 19.49 9.73 42.67 3.85
8611 9215 2.287308 CGGTTCCATTGCAAGAACGAAA 60.287 45.455 19.49 1.76 42.67 3.46
8612 9216 3.049912 GGTTCCATTGCAAGAACGAAAC 58.950 45.455 19.49 11.00 42.67 2.78
8613 9217 3.049912 GTTCCATTGCAAGAACGAAACC 58.950 45.455 13.77 0.00 33.65 3.27
8614 9218 2.302260 TCCATTGCAAGAACGAAACCA 58.698 42.857 4.94 0.00 0.00 3.67
8615 9219 2.034053 TCCATTGCAAGAACGAAACCAC 59.966 45.455 4.94 0.00 0.00 4.16
8616 9220 2.223688 CCATTGCAAGAACGAAACCACA 60.224 45.455 4.94 0.00 0.00 4.17
8617 9221 2.842208 TTGCAAGAACGAAACCACAG 57.158 45.000 0.00 0.00 0.00 3.66
8618 9222 2.031258 TGCAAGAACGAAACCACAGA 57.969 45.000 0.00 0.00 0.00 3.41
8619 9223 2.360844 TGCAAGAACGAAACCACAGAA 58.639 42.857 0.00 0.00 0.00 3.02
8620 9224 2.096819 TGCAAGAACGAAACCACAGAAC 59.903 45.455 0.00 0.00 0.00 3.01
8621 9225 2.096819 GCAAGAACGAAACCACAGAACA 59.903 45.455 0.00 0.00 0.00 3.18
8622 9226 3.243068 GCAAGAACGAAACCACAGAACAT 60.243 43.478 0.00 0.00 0.00 2.71
8623 9227 4.733523 GCAAGAACGAAACCACAGAACATT 60.734 41.667 0.00 0.00 0.00 2.71
8624 9228 4.552166 AGAACGAAACCACAGAACATTG 57.448 40.909 0.00 0.00 0.00 2.82
8625 9229 3.945285 AGAACGAAACCACAGAACATTGT 59.055 39.130 0.00 0.00 0.00 2.71
8626 9230 4.398044 AGAACGAAACCACAGAACATTGTT 59.602 37.500 0.63 0.63 0.00 2.83
8627 9231 4.287238 ACGAAACCACAGAACATTGTTC 57.713 40.909 19.64 19.64 0.00 3.18
8628 9232 3.692101 ACGAAACCACAGAACATTGTTCA 59.308 39.130 26.73 0.00 0.00 3.18
8629 9233 4.156922 ACGAAACCACAGAACATTGTTCAA 59.843 37.500 26.73 0.00 0.00 2.69
8630 9234 5.098893 CGAAACCACAGAACATTGTTCAAA 58.901 37.500 26.73 0.00 0.00 2.69
8631 9235 5.229887 CGAAACCACAGAACATTGTTCAAAG 59.770 40.000 26.73 18.93 0.00 2.77
8632 9236 4.045636 ACCACAGAACATTGTTCAAAGC 57.954 40.909 26.73 4.91 0.00 3.51
8633 9237 3.701040 ACCACAGAACATTGTTCAAAGCT 59.299 39.130 26.73 7.26 0.00 3.74
8634 9238 4.887071 ACCACAGAACATTGTTCAAAGCTA 59.113 37.500 26.73 0.00 0.00 3.32
8635 9239 5.215160 CCACAGAACATTGTTCAAAGCTAC 58.785 41.667 26.73 2.91 0.00 3.58
8636 9240 5.221028 CCACAGAACATTGTTCAAAGCTACA 60.221 40.000 26.73 0.00 0.00 2.74
8637 9241 6.264832 CACAGAACATTGTTCAAAGCTACAA 58.735 36.000 26.73 2.40 38.50 2.41
8638 9242 6.415867 CACAGAACATTGTTCAAAGCTACAAG 59.584 38.462 26.73 9.08 37.64 3.16
8639 9243 5.916883 CAGAACATTGTTCAAAGCTACAAGG 59.083 40.000 26.73 9.55 40.68 3.61
8640 9244 4.243007 ACATTGTTCAAAGCTACAAGGC 57.757 40.909 10.74 0.00 39.04 4.35
8641 9245 3.236816 CATTGTTCAAAGCTACAAGGCG 58.763 45.455 6.02 0.00 37.64 5.52
8642 9246 0.591170 TGTTCAAAGCTACAAGGCGC 59.409 50.000 0.00 0.00 37.29 6.53
8643 9247 0.452784 GTTCAAAGCTACAAGGCGCG 60.453 55.000 0.00 0.00 37.29 6.86
8644 9248 2.182614 TTCAAAGCTACAAGGCGCGC 62.183 55.000 25.94 25.94 37.29 6.86
8645 9249 3.788766 AAAGCTACAAGGCGCGCG 61.789 61.111 28.44 28.44 37.29 6.86
8656 9260 3.510675 GCGCGCGGGGGAAATAAA 61.511 61.111 33.06 0.00 0.00 1.40
8657 9261 2.405997 CGCGCGGGGGAAATAAAC 59.594 61.111 24.84 0.00 0.00 2.01
8658 9262 2.400158 CGCGCGGGGGAAATAAACA 61.400 57.895 24.84 0.00 0.00 2.83
8659 9263 1.431845 GCGCGGGGGAAATAAACAG 59.568 57.895 8.83 0.00 0.00 3.16
8660 9264 1.431845 CGCGGGGGAAATAAACAGC 59.568 57.895 0.00 0.00 0.00 4.40
8661 9265 1.309499 CGCGGGGGAAATAAACAGCA 61.309 55.000 0.00 0.00 0.00 4.41
8662 9266 0.892063 GCGGGGGAAATAAACAGCAA 59.108 50.000 0.00 0.00 0.00 3.91
8663 9267 1.273886 GCGGGGGAAATAAACAGCAAA 59.726 47.619 0.00 0.00 0.00 3.68
8664 9268 2.289133 GCGGGGGAAATAAACAGCAAAA 60.289 45.455 0.00 0.00 0.00 2.44
8665 9269 3.618752 GCGGGGGAAATAAACAGCAAAAT 60.619 43.478 0.00 0.00 0.00 1.82
8666 9270 3.932089 CGGGGGAAATAAACAGCAAAATG 59.068 43.478 0.00 0.00 0.00 2.32
8667 9271 3.689161 GGGGGAAATAAACAGCAAAATGC 59.311 43.478 0.00 0.00 45.46 3.56
8685 9289 2.530151 TGCCCCAGCAGGAACTCT 60.530 61.111 0.00 0.00 46.52 3.24
8686 9290 1.229496 TGCCCCAGCAGGAACTCTA 60.229 57.895 0.00 0.00 46.52 2.43
8687 9291 0.840288 TGCCCCAGCAGGAACTCTAA 60.840 55.000 0.00 0.00 46.52 2.10
8688 9292 0.107459 GCCCCAGCAGGAACTCTAAG 60.107 60.000 0.00 0.00 34.60 2.18
8689 9293 0.107459 CCCCAGCAGGAACTCTAAGC 60.107 60.000 0.00 0.00 34.60 3.09
8690 9294 0.615331 CCCAGCAGGAACTCTAAGCA 59.385 55.000 0.00 0.00 34.60 3.91
8691 9295 1.003580 CCCAGCAGGAACTCTAAGCAA 59.996 52.381 0.00 0.00 34.60 3.91
8692 9296 2.356535 CCCAGCAGGAACTCTAAGCAAT 60.357 50.000 0.00 0.00 34.60 3.56
8693 9297 2.941720 CCAGCAGGAACTCTAAGCAATC 59.058 50.000 0.00 0.00 34.60 2.67
8694 9298 3.370315 CCAGCAGGAACTCTAAGCAATCT 60.370 47.826 0.00 0.00 34.60 2.40
8695 9299 4.141846 CCAGCAGGAACTCTAAGCAATCTA 60.142 45.833 0.00 0.00 34.60 1.98
8696 9300 5.454471 CCAGCAGGAACTCTAAGCAATCTAT 60.454 44.000 0.00 0.00 34.60 1.98
8697 9301 5.466058 CAGCAGGAACTCTAAGCAATCTATG 59.534 44.000 0.00 0.00 34.60 2.23
8709 9313 2.618794 CAATCTATGCTCCTCTCCCCT 58.381 52.381 0.00 0.00 0.00 4.79
8710 9314 2.978278 CAATCTATGCTCCTCTCCCCTT 59.022 50.000 0.00 0.00 0.00 3.95
8711 9315 2.094100 TCTATGCTCCTCTCCCCTTG 57.906 55.000 0.00 0.00 0.00 3.61
8712 9316 1.055040 CTATGCTCCTCTCCCCTTGG 58.945 60.000 0.00 0.00 0.00 3.61
8713 9317 0.642156 TATGCTCCTCTCCCCTTGGA 59.358 55.000 0.00 0.00 38.75 3.53
8714 9318 0.985490 ATGCTCCTCTCCCCTTGGAC 60.985 60.000 0.00 0.00 35.03 4.02
8715 9319 1.613630 GCTCCTCTCCCCTTGGACA 60.614 63.158 0.00 0.00 35.03 4.02
8716 9320 1.621672 GCTCCTCTCCCCTTGGACAG 61.622 65.000 0.00 0.00 35.03 3.51
8717 9321 1.613630 TCCTCTCCCCTTGGACAGC 60.614 63.158 0.00 0.00 35.03 4.40
8718 9322 1.614824 CCTCTCCCCTTGGACAGCT 60.615 63.158 0.00 0.00 35.03 4.24
8719 9323 1.621672 CCTCTCCCCTTGGACAGCTC 61.622 65.000 0.00 0.00 35.03 4.09
8720 9324 1.613630 TCTCCCCTTGGACAGCTCC 60.614 63.158 0.00 0.00 35.03 4.70
8721 9325 2.610859 TCCCCTTGGACAGCTCCC 60.611 66.667 0.00 0.00 35.03 4.30
8722 9326 2.935481 CCCCTTGGACAGCTCCCA 60.935 66.667 0.33 0.33 35.34 4.37
8723 9327 2.673523 CCCTTGGACAGCTCCCAG 59.326 66.667 4.70 0.00 35.34 4.45
8724 9328 2.673523 CCTTGGACAGCTCCCAGG 59.326 66.667 6.77 6.77 41.93 4.45
8725 9329 2.673523 CTTGGACAGCTCCCAGGG 59.326 66.667 0.00 0.00 35.34 4.45
8726 9330 2.935481 TTGGACAGCTCCCAGGGG 60.935 66.667 5.33 0.92 35.34 4.79
8727 9331 3.498961 TTGGACAGCTCCCAGGGGA 62.499 63.158 5.33 6.92 42.90 4.81
8728 9332 2.610859 GGACAGCTCCCAGGGGAA 60.611 66.667 5.33 0.00 44.66 3.97
8729 9333 2.674220 GGACAGCTCCCAGGGGAAG 61.674 68.421 5.33 0.00 44.66 3.46
8730 9334 3.334054 ACAGCTCCCAGGGGAAGC 61.334 66.667 10.77 10.77 44.66 3.86
8731 9335 3.333219 CAGCTCCCAGGGGAAGCA 61.333 66.667 19.28 0.00 44.66 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.032054 GGTCGTGTGAATGCATACCATG 59.968 50.000 0.00 2.88 33.08 3.66
106 107 5.390461 CCGTCAAAACTTGATGCTTCGATAA 60.390 40.000 3.52 0.00 43.66 1.75
166 167 7.984475 TGCTCTAAGATTCTACTCTATCTCCT 58.016 38.462 0.00 0.00 30.95 3.69
185 186 4.108124 AGGGGTCCAGTTATAGATGCTCTA 59.892 45.833 0.00 0.00 32.87 2.43
193 194 3.780850 AGGTTTGAGGGGTCCAGTTATAG 59.219 47.826 0.00 0.00 0.00 1.31
236 237 4.742201 CAGACAGTGACCGGCCCG 62.742 72.222 0.00 0.00 0.00 6.13
237 238 2.579684 GATCAGACAGTGACCGGCCC 62.580 65.000 0.00 0.00 38.28 5.80
252 253 4.216687 GGTTGGGTATTGTTTTCGTGATCA 59.783 41.667 0.00 0.00 0.00 2.92
270 271 0.609957 GGTTTAAGGGGTCCGGTTGG 60.610 60.000 0.00 0.00 0.00 3.77
275 276 1.378119 GGCAGGTTTAAGGGGTCCG 60.378 63.158 0.00 0.00 0.00 4.79
289 290 1.917955 CGACACACACGTATAAGGCAG 59.082 52.381 0.00 0.00 0.00 4.85
300 301 3.036084 CGCCACTCCGACACACAC 61.036 66.667 0.00 0.00 0.00 3.82
301 302 3.493830 GACGCCACTCCGACACACA 62.494 63.158 0.00 0.00 0.00 3.72
374 375 0.036388 GCTCCATCCCAAACTCGTGA 60.036 55.000 0.00 0.00 0.00 4.35
376 377 1.079127 CGCTCCATCCCAAACTCGT 60.079 57.895 0.00 0.00 0.00 4.18
384 385 0.954449 CATCTCATGCGCTCCATCCC 60.954 60.000 9.73 0.00 29.71 3.85
450 452 0.955919 CCTTCAGGTTTGTCCTCGCC 60.956 60.000 0.00 0.00 46.24 5.54
451 453 2.544726 CCTTCAGGTTTGTCCTCGC 58.455 57.895 0.00 0.00 46.24 5.03
493 495 2.912956 AGAGTGCTTTATCCAACCTCCA 59.087 45.455 0.00 0.00 0.00 3.86
571 573 1.353091 GGTTCTTCTCACCTCCCACT 58.647 55.000 0.00 0.00 0.00 4.00
595 597 3.698040 CTCCATTTCATCCAACTTCCCTG 59.302 47.826 0.00 0.00 0.00 4.45
792 795 0.534203 GACTGAACGGGCCACTTTGA 60.534 55.000 4.39 0.00 0.00 2.69
807 810 1.852965 AGGGGGTTTGGATATGGACTG 59.147 52.381 0.00 0.00 0.00 3.51
822 825 0.908198 CACAGGAGAGAGAAAGGGGG 59.092 60.000 0.00 0.00 0.00 5.40
823 826 1.552792 GACACAGGAGAGAGAAAGGGG 59.447 57.143 0.00 0.00 0.00 4.79
824 827 1.203523 CGACACAGGAGAGAGAAAGGG 59.796 57.143 0.00 0.00 0.00 3.95
825 828 1.889829 ACGACACAGGAGAGAGAAAGG 59.110 52.381 0.00 0.00 0.00 3.11
826 829 2.413502 CGACGACACAGGAGAGAGAAAG 60.414 54.545 0.00 0.00 0.00 2.62
828 831 1.157585 CGACGACACAGGAGAGAGAA 58.842 55.000 0.00 0.00 0.00 2.87
829 832 0.035036 ACGACGACACAGGAGAGAGA 59.965 55.000 0.00 0.00 0.00 3.10
831 834 0.591659 CAACGACGACACAGGAGAGA 59.408 55.000 0.00 0.00 0.00 3.10
833 836 1.007734 GCAACGACGACACAGGAGA 60.008 57.895 0.00 0.00 0.00 3.71
834 837 2.022129 GGCAACGACGACACAGGAG 61.022 63.158 0.00 0.00 0.00 3.69
835 838 2.028484 GGCAACGACGACACAGGA 59.972 61.111 0.00 0.00 0.00 3.86
836 839 2.279851 TGGCAACGACGACACAGG 60.280 61.111 0.00 0.00 42.51 4.00
837 840 2.594962 GGTGGCAACGACGACACAG 61.595 63.158 15.03 0.00 42.51 3.66
838 841 2.586635 GGTGGCAACGACGACACA 60.587 61.111 15.03 0.00 42.51 3.72
839 842 3.698463 CGGTGGCAACGACGACAC 61.698 66.667 22.63 6.31 40.24 3.67
908 915 8.250538 GGCTTCCGAAAATGAAAATGAAAATA 57.749 30.769 0.00 0.00 0.00 1.40
932 939 2.740447 CTCGGAGGAAAGGTAAAAACGG 59.260 50.000 0.00 0.00 0.00 4.44
1041 1048 1.374190 CTTGAGCTGGTCAGTGGCT 59.626 57.895 9.70 0.00 36.21 4.75
1085 1092 8.307483 TGCTAATTTCGAATTGTTGGGAATAAA 58.693 29.630 0.00 0.00 0.00 1.40
1108 1115 1.134280 GCATGATACAGTCCACCTGCT 60.134 52.381 0.00 0.00 45.68 4.24
1295 1302 3.855858 TGAGAACCAAAACAAAGCCAAC 58.144 40.909 0.00 0.00 0.00 3.77
1351 1358 4.640771 AGCAAATCTAGACCTTCCACAA 57.359 40.909 0.00 0.00 0.00 3.33
1438 1445 1.216710 GTCAACAGAGAGGCCTCGG 59.783 63.158 26.95 21.46 44.08 4.63
1491 1498 9.793259 CAAAGGGGTACACATGACTTATATTAT 57.207 33.333 0.00 0.00 0.00 1.28
1492 1499 8.774183 ACAAAGGGGTACACATGACTTATATTA 58.226 33.333 0.00 0.00 0.00 0.98
1493 1500 7.639378 ACAAAGGGGTACACATGACTTATATT 58.361 34.615 0.00 0.00 0.00 1.28
1494 1501 7.208064 ACAAAGGGGTACACATGACTTATAT 57.792 36.000 0.00 0.00 0.00 0.86
1495 1502 6.630203 ACAAAGGGGTACACATGACTTATA 57.370 37.500 0.00 0.00 0.00 0.98
1496 1503 5.514500 ACAAAGGGGTACACATGACTTAT 57.486 39.130 0.00 0.00 0.00 1.73
1497 1504 4.986054 ACAAAGGGGTACACATGACTTA 57.014 40.909 0.00 0.00 0.00 2.24
1498 1505 3.876309 ACAAAGGGGTACACATGACTT 57.124 42.857 0.00 0.00 0.00 3.01
1499 1506 5.514500 AATACAAAGGGGTACACATGACT 57.486 39.130 0.00 0.00 0.00 3.41
1500 1507 7.773690 AGATAAATACAAAGGGGTACACATGAC 59.226 37.037 0.00 0.00 0.00 3.06
1501 1508 7.867921 AGATAAATACAAAGGGGTACACATGA 58.132 34.615 0.00 0.00 0.00 3.07
1502 1509 7.042051 CGAGATAAATACAAAGGGGTACACATG 60.042 40.741 0.00 0.00 0.00 3.21
1503 1510 6.990349 CGAGATAAATACAAAGGGGTACACAT 59.010 38.462 0.00 0.00 0.00 3.21
1504 1511 6.070653 ACGAGATAAATACAAAGGGGTACACA 60.071 38.462 0.00 0.00 0.00 3.72
1505 1512 6.343703 ACGAGATAAATACAAAGGGGTACAC 58.656 40.000 0.00 0.00 0.00 2.90
1506 1513 6.549433 ACGAGATAAATACAAAGGGGTACA 57.451 37.500 0.00 0.00 0.00 2.90
1507 1514 7.720442 ACTACGAGATAAATACAAAGGGGTAC 58.280 38.462 0.00 0.00 0.00 3.34
1508 1515 7.902920 ACTACGAGATAAATACAAAGGGGTA 57.097 36.000 0.00 0.00 0.00 3.69
1509 1516 6.803366 ACTACGAGATAAATACAAAGGGGT 57.197 37.500 0.00 0.00 0.00 4.95
1515 1522 9.592196 ACCCCTTATACTACGAGATAAATACAA 57.408 33.333 0.00 0.00 0.00 2.41
1516 1523 9.592196 AACCCCTTATACTACGAGATAAATACA 57.408 33.333 0.00 0.00 0.00 2.29
1519 1526 8.591940 GGAAACCCCTTATACTACGAGATAAAT 58.408 37.037 0.00 0.00 0.00 1.40
1520 1527 7.786464 AGGAAACCCCTTATACTACGAGATAAA 59.214 37.037 0.00 0.00 44.85 1.40
1521 1528 7.232127 CAGGAAACCCCTTATACTACGAGATAA 59.768 40.741 0.00 0.00 44.85 1.75
1522 1529 6.718454 CAGGAAACCCCTTATACTACGAGATA 59.282 42.308 0.00 0.00 44.85 1.98
1523 1530 5.539193 CAGGAAACCCCTTATACTACGAGAT 59.461 44.000 0.00 0.00 44.85 2.75
1524 1531 4.891756 CAGGAAACCCCTTATACTACGAGA 59.108 45.833 0.00 0.00 44.85 4.04
1525 1532 4.501058 GCAGGAAACCCCTTATACTACGAG 60.501 50.000 0.00 0.00 44.85 4.18
1526 1533 3.385755 GCAGGAAACCCCTTATACTACGA 59.614 47.826 0.00 0.00 44.85 3.43
1527 1534 3.133362 TGCAGGAAACCCCTTATACTACG 59.867 47.826 0.00 0.00 44.85 3.51
1528 1535 4.765813 TGCAGGAAACCCCTTATACTAC 57.234 45.455 0.00 0.00 44.85 2.73
1529 1536 6.561070 ACATATGCAGGAAACCCCTTATACTA 59.439 38.462 1.58 0.00 44.85 1.82
1530 1537 5.372661 ACATATGCAGGAAACCCCTTATACT 59.627 40.000 1.58 0.00 44.85 2.12
1531 1538 5.631119 ACATATGCAGGAAACCCCTTATAC 58.369 41.667 1.58 0.00 44.85 1.47
1532 1539 5.922960 ACATATGCAGGAAACCCCTTATA 57.077 39.130 1.58 0.00 44.85 0.98
1533 1540 4.814224 ACATATGCAGGAAACCCCTTAT 57.186 40.909 1.58 0.00 44.85 1.73
1534 1541 4.141344 GGTACATATGCAGGAAACCCCTTA 60.141 45.833 1.58 0.00 44.85 2.69
1535 1542 3.372675 GGTACATATGCAGGAAACCCCTT 60.373 47.826 1.58 0.00 44.85 3.95
1536 1543 6.459380 GTGGTACATATGCAGGAAACCCCT 62.459 50.000 1.58 0.00 45.17 4.79
1537 1544 2.092103 TGGTACATATGCAGGAAACCCC 60.092 50.000 1.58 0.00 0.00 4.95
1538 1545 2.949644 GTGGTACATATGCAGGAAACCC 59.050 50.000 1.58 0.00 44.52 4.11
1539 1546 3.377172 GTGTGGTACATATGCAGGAAACC 59.623 47.826 1.58 2.27 44.52 3.27
1540 1547 3.377172 GGTGTGGTACATATGCAGGAAAC 59.623 47.826 1.58 0.00 44.52 2.78
1541 1548 3.265737 AGGTGTGGTACATATGCAGGAAA 59.734 43.478 1.58 0.00 44.52 3.13
1542 1549 2.843730 AGGTGTGGTACATATGCAGGAA 59.156 45.455 1.58 0.00 44.52 3.36
1543 1550 2.170397 CAGGTGTGGTACATATGCAGGA 59.830 50.000 1.58 0.00 44.52 3.86
1544 1551 2.092968 ACAGGTGTGGTACATATGCAGG 60.093 50.000 1.58 0.00 44.52 4.85
1545 1552 3.266510 ACAGGTGTGGTACATATGCAG 57.733 47.619 1.58 0.00 44.52 4.41
1546 1553 3.515901 TGTACAGGTGTGGTACATATGCA 59.484 43.478 1.58 0.00 44.39 3.96
1547 1554 4.131649 TGTACAGGTGTGGTACATATGC 57.868 45.455 1.58 0.00 44.39 3.14
1555 1562 8.683615 CGATATATATACATGTACAGGTGTGGT 58.316 37.037 22.69 11.80 0.00 4.16
1556 1563 8.135529 CCGATATATATACATGTACAGGTGTGG 58.864 40.741 22.69 8.15 0.00 4.17
1557 1564 7.648112 GCCGATATATATACATGTACAGGTGTG 59.352 40.741 22.69 8.01 0.00 3.82
1558 1565 7.201884 GGCCGATATATATACATGTACAGGTGT 60.202 40.741 22.69 18.40 0.00 4.16
1559 1566 7.014326 AGGCCGATATATATACATGTACAGGTG 59.986 40.741 22.69 9.15 0.00 4.00
1560 1567 7.067421 AGGCCGATATATATACATGTACAGGT 58.933 38.462 18.23 18.23 0.00 4.00
1561 1568 7.526142 AGGCCGATATATATACATGTACAGG 57.474 40.000 7.96 5.87 0.00 4.00
1563 1570 9.020731 CCATAGGCCGATATATATACATGTACA 57.979 37.037 7.96 0.00 0.00 2.90
1564 1571 7.974501 GCCATAGGCCGATATATATACATGTAC 59.025 40.741 7.96 0.00 44.06 2.90
1565 1572 8.063200 GCCATAGGCCGATATATATACATGTA 57.937 38.462 8.27 8.27 44.06 2.29
1566 1573 6.936279 GCCATAGGCCGATATATATACATGT 58.064 40.000 2.69 2.69 44.06 3.21
1583 1590 4.927267 TGTATTCCCATAAGGCCATAGG 57.073 45.455 5.01 0.00 34.51 2.57
1584 1591 5.880901 ACTTGTATTCCCATAAGGCCATAG 58.119 41.667 5.01 0.00 34.51 2.23
1585 1592 5.922960 ACTTGTATTCCCATAAGGCCATA 57.077 39.130 5.01 0.00 34.51 2.74
1586 1593 4.814224 ACTTGTATTCCCATAAGGCCAT 57.186 40.909 5.01 0.00 34.51 4.40
1587 1594 4.277476 CAACTTGTATTCCCATAAGGCCA 58.723 43.478 5.01 0.00 34.51 5.36
1588 1595 3.068165 GCAACTTGTATTCCCATAAGGCC 59.932 47.826 0.00 0.00 34.51 5.19
1589 1596 3.954258 AGCAACTTGTATTCCCATAAGGC 59.046 43.478 0.00 0.00 34.51 4.35
1590 1597 7.823745 ATAAGCAACTTGTATTCCCATAAGG 57.176 36.000 0.00 0.00 0.00 2.69
1591 1598 8.352942 GGAATAAGCAACTTGTATTCCCATAAG 58.647 37.037 14.79 0.00 43.89 1.73
1592 1599 8.232913 GGAATAAGCAACTTGTATTCCCATAA 57.767 34.615 14.79 0.00 43.89 1.90
1593 1600 7.817418 GGAATAAGCAACTTGTATTCCCATA 57.183 36.000 14.79 0.00 43.89 2.74
1594 1601 6.715347 GGAATAAGCAACTTGTATTCCCAT 57.285 37.500 14.79 0.00 43.89 4.00
1598 1605 9.722056 CATGTTAGGAATAAGCAACTTGTATTC 57.278 33.333 0.00 4.57 34.75 1.75
1599 1606 8.686334 CCATGTTAGGAATAAGCAACTTGTATT 58.314 33.333 0.00 0.00 0.00 1.89
1600 1607 7.834181 ACCATGTTAGGAATAAGCAACTTGTAT 59.166 33.333 0.00 0.00 0.00 2.29
1601 1608 7.172342 ACCATGTTAGGAATAAGCAACTTGTA 58.828 34.615 0.00 0.00 0.00 2.41
1602 1609 6.010219 ACCATGTTAGGAATAAGCAACTTGT 58.990 36.000 0.00 0.00 0.00 3.16
1603 1610 6.515272 ACCATGTTAGGAATAAGCAACTTG 57.485 37.500 0.00 0.00 0.00 3.16
1604 1611 8.823220 AATACCATGTTAGGAATAAGCAACTT 57.177 30.769 0.00 0.00 0.00 2.66
1605 1612 9.561069 CTAATACCATGTTAGGAATAAGCAACT 57.439 33.333 0.00 0.00 0.00 3.16
1606 1613 9.555727 TCTAATACCATGTTAGGAATAAGCAAC 57.444 33.333 0.00 0.00 31.59 4.17
1607 1614 9.778741 CTCTAATACCATGTTAGGAATAAGCAA 57.221 33.333 0.00 0.00 31.59 3.91
1608 1615 7.878127 GCTCTAATACCATGTTAGGAATAAGCA 59.122 37.037 0.00 0.00 31.59 3.91
1609 1616 8.097662 AGCTCTAATACCATGTTAGGAATAAGC 58.902 37.037 0.00 0.00 31.59 3.09
1612 1619 9.256228 CCTAGCTCTAATACCATGTTAGGAATA 57.744 37.037 0.00 0.00 31.59 1.75
1613 1620 7.735321 ACCTAGCTCTAATACCATGTTAGGAAT 59.265 37.037 0.00 0.00 31.59 3.01
1614 1621 7.073854 ACCTAGCTCTAATACCATGTTAGGAA 58.926 38.462 0.00 0.00 31.59 3.36
1615 1622 6.621394 ACCTAGCTCTAATACCATGTTAGGA 58.379 40.000 0.00 0.00 31.59 2.94
1616 1623 6.493802 TGACCTAGCTCTAATACCATGTTAGG 59.506 42.308 0.00 0.00 31.59 2.69
1617 1624 7.526142 TGACCTAGCTCTAATACCATGTTAG 57.474 40.000 0.00 0.00 0.00 2.34
1618 1625 7.907841 TTGACCTAGCTCTAATACCATGTTA 57.092 36.000 0.00 0.00 0.00 2.41
1619 1626 6.808321 TTGACCTAGCTCTAATACCATGTT 57.192 37.500 0.00 0.00 0.00 2.71
1620 1627 7.380423 AATTGACCTAGCTCTAATACCATGT 57.620 36.000 0.00 0.00 0.00 3.21
1621 1628 8.682936 AAAATTGACCTAGCTCTAATACCATG 57.317 34.615 0.00 0.00 0.00 3.66
1657 1664 3.553511 GGACAGATCAATAGCACGAGTTG 59.446 47.826 0.00 0.00 0.00 3.16
1658 1665 3.430929 GGGACAGATCAATAGCACGAGTT 60.431 47.826 0.00 0.00 0.00 3.01
1659 1666 2.101582 GGGACAGATCAATAGCACGAGT 59.898 50.000 0.00 0.00 0.00 4.18
1660 1667 2.748605 GGGACAGATCAATAGCACGAG 58.251 52.381 0.00 0.00 0.00 4.18
1661 1668 1.067060 CGGGACAGATCAATAGCACGA 59.933 52.381 0.00 0.00 0.00 4.35
1662 1669 1.067060 TCGGGACAGATCAATAGCACG 59.933 52.381 0.00 0.00 0.00 5.34
1663 1670 2.890808 TCGGGACAGATCAATAGCAC 57.109 50.000 0.00 0.00 0.00 4.40
1664 1671 2.029918 CGATCGGGACAGATCAATAGCA 60.030 50.000 7.38 0.00 45.39 3.49
1665 1672 2.229062 TCGATCGGGACAGATCAATAGC 59.771 50.000 16.41 0.00 45.39 2.97
1666 1673 3.504134 ACTCGATCGGGACAGATCAATAG 59.496 47.826 24.50 6.02 45.39 1.73
1667 1674 3.487372 ACTCGATCGGGACAGATCAATA 58.513 45.455 24.50 0.00 45.39 1.90
1668 1675 2.294791 GACTCGATCGGGACAGATCAAT 59.705 50.000 24.50 0.00 45.39 2.57
1669 1676 1.676529 GACTCGATCGGGACAGATCAA 59.323 52.381 24.50 0.00 45.39 2.57
1670 1677 1.309950 GACTCGATCGGGACAGATCA 58.690 55.000 24.50 0.00 45.39 2.92
1681 1688 3.786918 GACGTCGGCCGACTCGATC 62.787 68.421 44.83 33.44 42.54 3.69
1682 1689 3.873883 GACGTCGGCCGACTCGAT 61.874 66.667 44.83 31.29 42.54 3.59
1697 1704 4.500116 GAGCAGGAGGACGGCGAC 62.500 72.222 16.62 7.58 45.49 5.19
1700 1707 3.708220 CTTCGAGCAGGAGGACGGC 62.708 68.421 0.00 0.00 40.88 5.68
1701 1708 2.272918 GACTTCGAGCAGGAGGACGG 62.273 65.000 0.00 0.00 0.00 4.79
1702 1709 1.137825 GACTTCGAGCAGGAGGACG 59.862 63.158 0.00 0.00 0.00 4.79
1703 1710 1.137825 CGACTTCGAGCAGGAGGAC 59.862 63.158 0.00 0.00 43.02 3.85
1704 1711 1.303398 ACGACTTCGAGCAGGAGGA 60.303 57.895 5.47 0.00 43.02 3.71
1705 1712 1.137825 GACGACTTCGAGCAGGAGG 59.862 63.158 5.47 0.00 43.02 4.30
1706 1713 4.775746 GACGACTTCGAGCAGGAG 57.224 61.111 5.47 0.00 43.02 3.69
1723 1730 4.838486 GAGGAGCCGCAGTCGACG 62.838 72.222 10.46 6.47 38.10 5.12
1724 1731 4.500116 GGAGGAGCCGCAGTCGAC 62.500 72.222 7.70 7.70 38.10 4.20
1733 1740 4.214327 CTTCGAGCGGGAGGAGCC 62.214 72.222 0.00 0.00 34.64 4.70
1734 1741 4.882396 GCTTCGAGCGGGAGGAGC 62.882 72.222 0.00 0.00 0.00 4.70
1743 1750 4.214327 CGGGAGGGAGCTTCGAGC 62.214 72.222 0.00 0.00 42.84 5.03
1744 1751 4.214327 GCGGGAGGGAGCTTCGAG 62.214 72.222 0.00 0.00 0.00 4.04
1745 1752 4.761058 AGCGGGAGGGAGCTTCGA 62.761 66.667 0.00 0.00 41.52 3.71
1746 1753 4.214327 GAGCGGGAGGGAGCTTCG 62.214 72.222 0.00 0.00 44.69 3.79
1747 1754 3.855853 GGAGCGGGAGGGAGCTTC 61.856 72.222 0.00 0.00 44.69 3.86
1784 1791 4.856607 CTTCGAGCGGCCGACTCC 62.857 72.222 33.48 11.55 38.39 3.85
1794 1801 4.214327 CGGGAGGGAGCTTCGAGC 62.214 72.222 0.00 0.00 42.84 5.03
1795 1802 4.214327 GCGGGAGGGAGCTTCGAG 62.214 72.222 0.00 0.00 0.00 4.04
1796 1803 4.761058 AGCGGGAGGGAGCTTCGA 62.761 66.667 0.00 0.00 41.52 3.71
1797 1804 4.214327 GAGCGGGAGGGAGCTTCG 62.214 72.222 0.00 0.00 44.69 3.79
1798 1805 3.855853 GGAGCGGGAGGGAGCTTC 61.856 72.222 0.00 0.00 44.69 3.86
1819 1826 4.856607 CTTCGAGCGGCCGACTCC 62.857 72.222 33.48 11.55 38.39 3.85
2034 2073 3.056328 GCAACGGGAAGGAGCCAC 61.056 66.667 0.00 0.00 0.00 5.01
2035 2074 4.344865 GGCAACGGGAAGGAGCCA 62.345 66.667 0.00 0.00 41.60 4.75
2038 2077 4.778143 CGGGGCAACGGGAAGGAG 62.778 72.222 0.00 0.00 37.60 3.69
2062 2108 2.441164 GAGGGCTCGAGCAGAGGA 60.441 66.667 36.27 0.00 46.91 3.71
2063 2109 2.441901 AGAGGGCTCGAGCAGAGG 60.442 66.667 36.27 0.53 46.91 3.69
2072 2118 4.516195 GAACCGGCGAGAGGGCTC 62.516 72.222 9.30 0.00 39.52 4.70
2074 2120 3.682292 ATTGAACCGGCGAGAGGGC 62.682 63.158 9.30 0.00 37.98 5.19
2109 2166 0.599204 GAACGAGGACAAACCGCAGA 60.599 55.000 0.00 0.00 44.74 4.26
2405 2475 2.301296 CCCTCTCATCATAGGCACGATT 59.699 50.000 0.00 0.00 0.00 3.34
2842 2912 3.807631 AAGCAACTGAGCACGCCGA 62.808 57.895 0.00 0.00 36.85 5.54
2899 2969 1.135257 CGAGTCTCCTCAGCACGAATT 60.135 52.381 0.00 0.00 37.59 2.17
3000 3070 2.579249 GAGCACTCGAGCGAGCAG 60.579 66.667 22.01 12.95 45.54 4.24
3051 3121 2.046314 AATGTGAACGGGGGCGAG 60.046 61.111 0.00 0.00 0.00 5.03
3106 3177 3.412386 GTGTTTCCTCTTGGTGTAGCAT 58.588 45.455 0.00 0.00 34.23 3.79
3160 3237 2.295472 CTGAAGCTGGCGAGGGAGAG 62.295 65.000 0.00 0.00 0.00 3.20
3235 3312 1.308069 TACCCGTCGAGGAAGAACCG 61.308 60.000 6.70 0.00 45.00 4.44
3639 3722 0.605589 GTCCAACTCCCAAAGACCCG 60.606 60.000 0.00 0.00 0.00 5.28
3761 3844 4.082408 AGACGATAATCGAGAACCACACAA 60.082 41.667 0.00 0.00 43.74 3.33
3795 3878 1.464198 ACAGACCCCAGAAGGCCTT 60.464 57.895 20.65 20.65 0.00 4.35
4021 4104 3.021695 CACCTCACTACGGGAAGTCATA 58.978 50.000 0.00 0.00 0.00 2.15
4427 4511 3.448660 GGGGCAAGAAGAACATAGCAAAT 59.551 43.478 0.00 0.00 0.00 2.32
4527 4613 2.711542 GACCGACAGAATCCCAACAAT 58.288 47.619 0.00 0.00 0.00 2.71
4538 4624 3.047718 GCATCCGACGACCGACAGA 62.048 63.158 0.00 0.00 41.76 3.41
4903 4989 4.826274 AGAAGAGGACGATTCATCCAAA 57.174 40.909 1.04 0.00 38.86 3.28
4912 4998 1.754226 GGCTGAGAAGAAGAGGACGAT 59.246 52.381 0.00 0.00 0.00 3.73
4924 5010 3.758554 GCAAACCATAAGAAGGCTGAGAA 59.241 43.478 0.00 0.00 0.00 2.87
4934 5020 2.991190 GACGAGAACGCAAACCATAAGA 59.009 45.455 0.00 0.00 43.96 2.10
4956 5042 1.544691 AGCGATTAATAGGCGGACGAT 59.455 47.619 0.00 0.00 0.00 3.73
5980 6070 3.506810 GAGAACACGAAGGAGATGACTG 58.493 50.000 0.00 0.00 0.00 3.51
6198 6290 0.967887 TAGCTCGCAACTCAGCCTCT 60.968 55.000 0.00 0.00 36.17 3.69
6589 6687 3.385755 GCAGGAAACCCCTTATACTACGA 59.614 47.826 0.00 0.00 44.85 3.43
6687 6785 1.000019 CGTCCTCCCCACCTACTGA 60.000 63.158 0.00 0.00 0.00 3.41
6688 6786 2.722201 GCGTCCTCCCCACCTACTG 61.722 68.421 0.00 0.00 0.00 2.74
6753 6851 3.367703 GGAAAGCACCCACATTTGATCAG 60.368 47.826 0.00 0.00 0.00 2.90
6791 6889 7.956420 TGACAAGTCTTCTTCGCTTAAATAA 57.044 32.000 1.53 0.00 0.00 1.40
6872 6970 1.274167 CATGCCTCACTGGTTTTGCAT 59.726 47.619 0.00 0.00 39.84 3.96
6892 6990 0.877071 CAGGATATGCAATGACGGCC 59.123 55.000 0.00 0.00 0.00 6.13
7260 7358 7.901283 ACTAAGTTCCCTATTTCTAGAGACC 57.099 40.000 0.00 0.00 0.00 3.85
7582 7680 5.460091 GCTTGTTTCCTGATTTTGTGAACTC 59.540 40.000 0.00 0.00 0.00 3.01
7583 7681 5.105392 TGCTTGTTTCCTGATTTTGTGAACT 60.105 36.000 0.00 0.00 0.00 3.01
7623 7721 6.266103 TCTCGTAGTACCTTTTCCTCTTCAAA 59.734 38.462 0.00 0.00 0.00 2.69
7775 7873 5.419788 ACATATCTGAGCAAGGCAAAAATGA 59.580 36.000 0.00 0.00 0.00 2.57
7776 7874 5.657474 ACATATCTGAGCAAGGCAAAAATG 58.343 37.500 0.00 0.00 0.00 2.32
7797 7895 7.275888 ACAATGCTCTTTTCACAAGATTACA 57.724 32.000 0.00 0.00 0.00 2.41
7858 7956 3.249986 TGGCCCGTTAGTGTTATGTAC 57.750 47.619 0.00 0.00 0.00 2.90
7921 8019 9.890629 AGCTCTTATCTAATTTGTGACATTACA 57.109 29.630 0.00 0.00 0.00 2.41
7945 8043 7.218204 CCAAATATAGTAAAAAGACAACGCAGC 59.782 37.037 0.00 0.00 0.00 5.25
7998 8096 2.175878 AGGTATCGATGATGGCAAGC 57.824 50.000 8.54 0.00 0.00 4.01
8030 8128 3.937814 AGTATTGACAATGGCTGTTCGA 58.062 40.909 11.05 0.00 38.84 3.71
8031 8129 4.685169 AAGTATTGACAATGGCTGTTCG 57.315 40.909 11.05 0.00 38.84 3.95
8108 8206 9.640963 GAAGACTAGTTTATTTCTCTAAGCACA 57.359 33.333 0.00 0.00 0.00 4.57
8146 8244 5.623824 CGTCTACCCTGTACAAATAAGCAGT 60.624 44.000 0.00 0.00 0.00 4.40
8147 8245 4.804139 CGTCTACCCTGTACAAATAAGCAG 59.196 45.833 0.00 0.00 0.00 4.24
8150 8248 5.007385 AGCGTCTACCCTGTACAAATAAG 57.993 43.478 0.00 0.00 0.00 1.73
8182 8280 4.647399 AGTGCCTATTTCTACAGGAGAGAC 59.353 45.833 0.00 0.00 34.93 3.36
8186 8284 3.452627 ACCAGTGCCTATTTCTACAGGAG 59.547 47.826 0.00 0.00 33.42 3.69
8187 8285 3.197766 CACCAGTGCCTATTTCTACAGGA 59.802 47.826 0.00 0.00 33.42 3.86
8202 8300 5.010012 ACTGGATTTTTCTAAAGCACCAGTG 59.990 40.000 19.01 0.00 44.58 3.66
8225 8323 9.076596 CAATGCTAGGTGCTTAGAAAAATAAAC 57.923 33.333 0.00 0.00 43.37 2.01
8239 8337 1.401905 GCCTTGTACAATGCTAGGTGC 59.598 52.381 23.62 7.87 43.25 5.01
8254 8352 3.117738 AGAACCATTCCTATCAGGCCTTG 60.118 47.826 0.00 0.00 34.61 3.61
8266 8364 7.492344 CCTTAAATTGCAATACAGAACCATTCC 59.508 37.037 13.39 0.00 0.00 3.01
8267 8365 8.250332 TCCTTAAATTGCAATACAGAACCATTC 58.750 33.333 13.39 0.00 0.00 2.67
8268 8366 8.133024 TCCTTAAATTGCAATACAGAACCATT 57.867 30.769 13.39 2.42 0.00 3.16
8318 8416 3.055530 ACTGCCAATGACTACCAGAGAAG 60.056 47.826 0.00 0.00 0.00 2.85
8319 8417 2.906389 ACTGCCAATGACTACCAGAGAA 59.094 45.455 0.00 0.00 0.00 2.87
8321 8419 2.027745 ACACTGCCAATGACTACCAGAG 60.028 50.000 0.00 0.00 0.00 3.35
8322 8420 1.977854 ACACTGCCAATGACTACCAGA 59.022 47.619 0.00 0.00 0.00 3.86
8323 8421 2.079158 CACACTGCCAATGACTACCAG 58.921 52.381 0.00 0.00 0.00 4.00
8324 8422 1.419762 ACACACTGCCAATGACTACCA 59.580 47.619 0.00 0.00 0.00 3.25
8325 8423 2.185004 ACACACTGCCAATGACTACC 57.815 50.000 0.00 0.00 0.00 3.18
8326 8424 3.623060 CCATACACACTGCCAATGACTAC 59.377 47.826 0.00 0.00 0.00 2.73
8327 8425 3.263170 ACCATACACACTGCCAATGACTA 59.737 43.478 0.00 0.00 0.00 2.59
8328 8426 2.040278 ACCATACACACTGCCAATGACT 59.960 45.455 0.00 0.00 0.00 3.41
8329 8427 2.162208 CACCATACACACTGCCAATGAC 59.838 50.000 0.00 0.00 0.00 3.06
8330 8428 2.224744 ACACCATACACACTGCCAATGA 60.225 45.455 0.00 0.00 0.00 2.57
8331 8429 2.095110 CACACCATACACACTGCCAATG 60.095 50.000 0.00 0.00 0.00 2.82
8332 8430 2.161855 CACACCATACACACTGCCAAT 58.838 47.619 0.00 0.00 0.00 3.16
8333 8431 1.141858 TCACACCATACACACTGCCAA 59.858 47.619 0.00 0.00 0.00 4.52
8334 8432 0.761802 TCACACCATACACACTGCCA 59.238 50.000 0.00 0.00 0.00 4.92
8335 8433 2.009774 GATCACACCATACACACTGCC 58.990 52.381 0.00 0.00 0.00 4.85
8336 8434 2.009774 GGATCACACCATACACACTGC 58.990 52.381 0.00 0.00 0.00 4.40
8337 8435 3.333029 TGGATCACACCATACACACTG 57.667 47.619 0.00 0.00 34.77 3.66
8352 8450 9.190317 GAGGGGGTAATTTAATGATAATGGATC 57.810 37.037 0.00 0.00 34.84 3.36
8353 8451 8.122481 GGAGGGGGTAATTTAATGATAATGGAT 58.878 37.037 0.00 0.00 0.00 3.41
8354 8452 7.475299 GGAGGGGGTAATTTAATGATAATGGA 58.525 38.462 0.00 0.00 0.00 3.41
8355 8453 6.667848 GGGAGGGGGTAATTTAATGATAATGG 59.332 42.308 0.00 0.00 0.00 3.16
8356 8454 6.667848 GGGGAGGGGGTAATTTAATGATAATG 59.332 42.308 0.00 0.00 0.00 1.90
8357 8455 6.241061 GGGGGAGGGGGTAATTTAATGATAAT 60.241 42.308 0.00 0.00 0.00 1.28
8358 8456 5.076738 GGGGGAGGGGGTAATTTAATGATAA 59.923 44.000 0.00 0.00 0.00 1.75
8359 8457 4.608918 GGGGGAGGGGGTAATTTAATGATA 59.391 45.833 0.00 0.00 0.00 2.15
8360 8458 3.404769 GGGGGAGGGGGTAATTTAATGAT 59.595 47.826 0.00 0.00 0.00 2.45
8361 8459 2.792967 GGGGGAGGGGGTAATTTAATGA 59.207 50.000 0.00 0.00 0.00 2.57
8362 8460 3.254093 GGGGGAGGGGGTAATTTAATG 57.746 52.381 0.00 0.00 0.00 1.90
8380 8478 1.755380 CACCGAGTAAGAGTTAGGGGG 59.245 57.143 0.00 0.00 0.00 5.40
8381 8479 1.755380 CCACCGAGTAAGAGTTAGGGG 59.245 57.143 0.00 0.00 0.00 4.79
8382 8480 2.165845 CACCACCGAGTAAGAGTTAGGG 59.834 54.545 0.00 0.00 0.00 3.53
8383 8481 2.165845 CCACCACCGAGTAAGAGTTAGG 59.834 54.545 0.00 0.00 0.00 2.69
8384 8482 3.087031 TCCACCACCGAGTAAGAGTTAG 58.913 50.000 0.00 0.00 0.00 2.34
8385 8483 3.087031 CTCCACCACCGAGTAAGAGTTA 58.913 50.000 0.00 0.00 0.00 2.24
8386 8484 1.893801 CTCCACCACCGAGTAAGAGTT 59.106 52.381 0.00 0.00 0.00 3.01
8387 8485 1.546961 CTCCACCACCGAGTAAGAGT 58.453 55.000 0.00 0.00 0.00 3.24
8388 8486 0.173708 GCTCCACCACCGAGTAAGAG 59.826 60.000 0.00 0.00 0.00 2.85
8389 8487 0.251653 AGCTCCACCACCGAGTAAGA 60.252 55.000 0.00 0.00 0.00 2.10
8390 8488 0.608640 AAGCTCCACCACCGAGTAAG 59.391 55.000 0.00 0.00 0.00 2.34
8391 8489 0.606604 GAAGCTCCACCACCGAGTAA 59.393 55.000 0.00 0.00 0.00 2.24
8392 8490 1.255667 GGAAGCTCCACCACCGAGTA 61.256 60.000 0.00 0.00 36.28 2.59
8393 8491 2.584391 GGAAGCTCCACCACCGAGT 61.584 63.158 0.00 0.00 36.28 4.18
8394 8492 2.266055 GGAAGCTCCACCACCGAG 59.734 66.667 0.00 0.00 36.28 4.63
8395 8493 3.319198 GGGAAGCTCCACCACCGA 61.319 66.667 6.83 0.00 38.64 4.69
8396 8494 2.411765 AAAGGGAAGCTCCACCACCG 62.412 60.000 4.38 0.00 38.64 4.94
8397 8495 0.895559 CAAAGGGAAGCTCCACCACC 60.896 60.000 4.38 0.00 38.64 4.61
8398 8496 0.110486 TCAAAGGGAAGCTCCACCAC 59.890 55.000 4.38 0.00 38.64 4.16
8399 8497 0.110486 GTCAAAGGGAAGCTCCACCA 59.890 55.000 4.38 0.00 38.64 4.17
8400 8498 0.609406 GGTCAAAGGGAAGCTCCACC 60.609 60.000 0.00 0.00 38.64 4.61
8401 8499 0.110486 TGGTCAAAGGGAAGCTCCAC 59.890 55.000 0.00 0.00 38.64 4.02
8402 8500 0.850100 TTGGTCAAAGGGAAGCTCCA 59.150 50.000 0.00 0.00 38.64 3.86
8403 8501 1.539157 CTTGGTCAAAGGGAAGCTCC 58.461 55.000 0.00 0.00 35.23 4.70
8431 8738 6.579042 GCATATTTCTAGATTAGGATGGGCCA 60.579 42.308 9.61 9.61 40.02 5.36
8432 8739 5.825151 GCATATTTCTAGATTAGGATGGGCC 59.175 44.000 0.00 0.00 0.00 5.80
8564 9168 3.818773 CGTGAGCCCTTTTCCTCTAAAAA 59.181 43.478 0.00 0.00 36.64 1.94
8567 9171 2.762535 CGTGAGCCCTTTTCCTCTAA 57.237 50.000 0.00 0.00 0.00 2.10
8586 9190 2.994417 TTGCAATGGAACCGGGGC 60.994 61.111 6.32 0.00 0.00 5.80
8587 9191 0.897863 TTCTTGCAATGGAACCGGGG 60.898 55.000 6.32 0.00 0.00 5.73
8588 9192 0.243636 GTTCTTGCAATGGAACCGGG 59.756 55.000 16.77 0.00 36.72 5.73
8589 9193 0.109781 CGTTCTTGCAATGGAACCGG 60.110 55.000 19.99 0.00 38.71 5.28
8590 9194 0.871722 TCGTTCTTGCAATGGAACCG 59.128 50.000 19.99 16.02 38.71 4.44
8591 9195 3.049912 GTTTCGTTCTTGCAATGGAACC 58.950 45.455 19.99 7.52 38.71 3.62
8592 9196 3.049912 GGTTTCGTTCTTGCAATGGAAC 58.950 45.455 17.36 17.36 38.60 3.62
8593 9197 2.690497 TGGTTTCGTTCTTGCAATGGAA 59.310 40.909 0.00 0.00 0.00 3.53
8594 9198 2.034053 GTGGTTTCGTTCTTGCAATGGA 59.966 45.455 0.00 0.00 0.00 3.41
8595 9199 2.223688 TGTGGTTTCGTTCTTGCAATGG 60.224 45.455 0.00 0.00 0.00 3.16
8596 9200 3.044986 CTGTGGTTTCGTTCTTGCAATG 58.955 45.455 0.00 0.00 0.00 2.82
8597 9201 2.948979 TCTGTGGTTTCGTTCTTGCAAT 59.051 40.909 0.00 0.00 0.00 3.56
8598 9202 2.360844 TCTGTGGTTTCGTTCTTGCAA 58.639 42.857 0.00 0.00 0.00 4.08
8599 9203 2.031258 TCTGTGGTTTCGTTCTTGCA 57.969 45.000 0.00 0.00 0.00 4.08
8600 9204 2.096819 TGTTCTGTGGTTTCGTTCTTGC 59.903 45.455 0.00 0.00 0.00 4.01
8601 9205 4.552166 ATGTTCTGTGGTTTCGTTCTTG 57.448 40.909 0.00 0.00 0.00 3.02
8602 9206 4.398044 ACAATGTTCTGTGGTTTCGTTCTT 59.602 37.500 0.00 0.00 0.00 2.52
8603 9207 3.945285 ACAATGTTCTGTGGTTTCGTTCT 59.055 39.130 0.00 0.00 0.00 3.01
8604 9208 4.287238 ACAATGTTCTGTGGTTTCGTTC 57.713 40.909 0.00 0.00 0.00 3.95
8605 9209 4.156922 TGAACAATGTTCTGTGGTTTCGTT 59.843 37.500 24.30 0.00 0.00 3.85
8606 9210 3.692101 TGAACAATGTTCTGTGGTTTCGT 59.308 39.130 24.30 0.00 0.00 3.85
8607 9211 4.285807 TGAACAATGTTCTGTGGTTTCG 57.714 40.909 24.30 0.00 0.00 3.46
8608 9212 5.005682 GCTTTGAACAATGTTCTGTGGTTTC 59.994 40.000 24.30 0.00 0.00 2.78
8609 9213 4.869861 GCTTTGAACAATGTTCTGTGGTTT 59.130 37.500 24.30 0.00 0.00 3.27
8610 9214 4.160252 AGCTTTGAACAATGTTCTGTGGTT 59.840 37.500 24.30 9.26 0.00 3.67
8611 9215 3.701040 AGCTTTGAACAATGTTCTGTGGT 59.299 39.130 24.30 16.26 0.00 4.16
8612 9216 4.311816 AGCTTTGAACAATGTTCTGTGG 57.688 40.909 24.30 13.67 0.00 4.17
8613 9217 5.820131 TGTAGCTTTGAACAATGTTCTGTG 58.180 37.500 24.30 15.20 0.00 3.66
8614 9218 6.449635 TTGTAGCTTTGAACAATGTTCTGT 57.550 33.333 24.30 8.93 30.88 3.41
8615 9219 5.916883 CCTTGTAGCTTTGAACAATGTTCTG 59.083 40.000 24.30 15.79 35.21 3.02
8616 9220 5.507985 GCCTTGTAGCTTTGAACAATGTTCT 60.508 40.000 24.30 8.58 35.21 3.01
8617 9221 4.681483 GCCTTGTAGCTTTGAACAATGTTC 59.319 41.667 18.42 18.42 35.21 3.18
8618 9222 4.620982 GCCTTGTAGCTTTGAACAATGTT 58.379 39.130 0.00 0.00 35.21 2.71
8619 9223 3.304659 CGCCTTGTAGCTTTGAACAATGT 60.305 43.478 0.00 0.00 35.21 2.71
8620 9224 3.236816 CGCCTTGTAGCTTTGAACAATG 58.763 45.455 0.00 0.00 35.21 2.82
8621 9225 2.351738 GCGCCTTGTAGCTTTGAACAAT 60.352 45.455 0.00 0.00 35.21 2.71
8622 9226 1.001815 GCGCCTTGTAGCTTTGAACAA 60.002 47.619 0.00 0.00 34.57 2.83
8623 9227 0.591170 GCGCCTTGTAGCTTTGAACA 59.409 50.000 0.00 0.00 0.00 3.18
8624 9228 0.452784 CGCGCCTTGTAGCTTTGAAC 60.453 55.000 0.00 0.00 0.00 3.18
8625 9229 1.866237 CGCGCCTTGTAGCTTTGAA 59.134 52.632 0.00 0.00 0.00 2.69
8626 9230 2.677003 GCGCGCCTTGTAGCTTTGA 61.677 57.895 23.24 0.00 0.00 2.69
8627 9231 2.202349 GCGCGCCTTGTAGCTTTG 60.202 61.111 23.24 0.00 0.00 2.77
8628 9232 3.788766 CGCGCGCCTTGTAGCTTT 61.789 61.111 27.72 0.00 0.00 3.51
8639 9243 3.510675 TTTATTTCCCCCGCGCGC 61.511 61.111 27.36 23.91 0.00 6.86
8640 9244 2.317685 CTGTTTATTTCCCCCGCGCG 62.318 60.000 25.67 25.67 0.00 6.86
8641 9245 1.431845 CTGTTTATTTCCCCCGCGC 59.568 57.895 0.00 0.00 0.00 6.86
8642 9246 1.309499 TGCTGTTTATTTCCCCCGCG 61.309 55.000 0.00 0.00 0.00 6.46
8643 9247 0.892063 TTGCTGTTTATTTCCCCCGC 59.108 50.000 0.00 0.00 0.00 6.13
8644 9248 3.669251 TTTTGCTGTTTATTTCCCCCG 57.331 42.857 0.00 0.00 0.00 5.73
8645 9249 3.689161 GCATTTTGCTGTTTATTTCCCCC 59.311 43.478 0.00 0.00 40.96 5.40
8646 9250 4.944962 GCATTTTGCTGTTTATTTCCCC 57.055 40.909 0.00 0.00 40.96 4.81
8669 9273 0.107459 CTTAGAGTTCCTGCTGGGGC 60.107 60.000 10.07 3.20 39.26 5.80
8670 9274 0.107459 GCTTAGAGTTCCTGCTGGGG 60.107 60.000 10.07 0.00 35.33 4.96
8671 9275 0.615331 TGCTTAGAGTTCCTGCTGGG 59.385 55.000 10.07 0.00 0.00 4.45
8672 9276 2.479566 TTGCTTAGAGTTCCTGCTGG 57.520 50.000 2.58 2.58 0.00 4.85
8673 9277 3.871485 AGATTGCTTAGAGTTCCTGCTG 58.129 45.455 0.00 0.00 0.00 4.41
8674 9278 5.609423 CATAGATTGCTTAGAGTTCCTGCT 58.391 41.667 0.00 0.00 0.00 4.24
8675 9279 5.921004 CATAGATTGCTTAGAGTTCCTGC 57.079 43.478 0.00 0.00 0.00 4.85
8689 9293 2.618794 AGGGGAGAGGAGCATAGATTG 58.381 52.381 0.00 0.00 0.00 2.67
8690 9294 2.978278 CAAGGGGAGAGGAGCATAGATT 59.022 50.000 0.00 0.00 0.00 2.40
8691 9295 2.618794 CAAGGGGAGAGGAGCATAGAT 58.381 52.381 0.00 0.00 0.00 1.98
8692 9296 1.413662 CCAAGGGGAGAGGAGCATAGA 60.414 57.143 0.00 0.00 35.59 1.98
8693 9297 1.055040 CCAAGGGGAGAGGAGCATAG 58.945 60.000 0.00 0.00 35.59 2.23
8694 9298 0.642156 TCCAAGGGGAGAGGAGCATA 59.358 55.000 0.00 0.00 38.64 3.14
8695 9299 0.985490 GTCCAAGGGGAGAGGAGCAT 60.985 60.000 0.00 0.00 46.12 3.79
8696 9300 1.613630 GTCCAAGGGGAGAGGAGCA 60.614 63.158 0.00 0.00 46.12 4.26
8697 9301 1.613630 TGTCCAAGGGGAGAGGAGC 60.614 63.158 0.00 0.00 46.12 4.70
8698 9302 4.896979 TGTCCAAGGGGAGAGGAG 57.103 61.111 0.00 0.00 46.12 3.69
8702 9306 1.613630 GGAGCTGTCCAAGGGGAGA 60.614 63.158 0.00 0.00 46.12 3.71
8703 9307 2.674220 GGGAGCTGTCCAAGGGGAG 61.674 68.421 0.00 0.00 46.12 4.30
8704 9308 2.610859 GGGAGCTGTCCAAGGGGA 60.611 66.667 0.00 0.00 46.07 4.81
8705 9309 2.935481 TGGGAGCTGTCCAAGGGG 60.935 66.667 0.00 0.00 46.07 4.79
8706 9310 2.673523 CTGGGAGCTGTCCAAGGG 59.326 66.667 0.00 0.00 46.07 3.95
8708 9312 2.673523 CCCTGGGAGCTGTCCAAG 59.326 66.667 7.01 0.00 46.07 3.61
8709 9313 2.935481 CCCCTGGGAGCTGTCCAA 60.935 66.667 16.20 0.00 46.07 3.53
8710 9314 3.498961 TTCCCCTGGGAGCTGTCCA 62.499 63.158 16.20 0.00 46.07 4.02
8711 9315 2.610859 TTCCCCTGGGAGCTGTCC 60.611 66.667 16.20 0.00 46.06 4.02
8712 9316 2.993853 CTTCCCCTGGGAGCTGTC 59.006 66.667 16.20 0.00 46.06 3.51
8713 9317 3.334054 GCTTCCCCTGGGAGCTGT 61.334 66.667 16.20 0.00 46.06 4.40
8714 9318 3.333219 TGCTTCCCCTGGGAGCTG 61.333 66.667 22.69 8.75 46.06 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.