Multiple sequence alignment - TraesCS2D01G238900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G238900 chr2D 100.000 4732 0 0 1 4732 250202745 250207476 0.000000e+00 8739.0
1 TraesCS2D01G238900 chr2D 92.593 54 4 0 4676 4729 483870772 483870825 1.410000e-10 78.7
2 TraesCS2D01G238900 chr2A 96.466 3056 70 9 1439 4461 311156110 311159160 0.000000e+00 5011.0
3 TraesCS2D01G238900 chr2A 97.625 800 17 2 597 1395 311154999 311155797 0.000000e+00 1371.0
4 TraesCS2D01G238900 chr2A 84.731 465 48 14 1 443 311154460 311154923 1.210000e-120 444.0
5 TraesCS2D01G238900 chr2A 84.267 375 42 15 81 442 592839728 592840098 2.710000e-92 350.0
6 TraesCS2D01G238900 chr2A 79.917 483 52 17 1 442 349033522 349033044 3.560000e-81 313.0
7 TraesCS2D01G238900 chr2A 79.296 483 56 13 1 442 345253575 345254054 9.960000e-77 298.0
8 TraesCS2D01G238900 chr2A 90.000 120 11 1 483 601 311154923 311155042 2.280000e-33 154.0
9 TraesCS2D01G238900 chr2A 92.453 53 4 0 4676 4728 753234506 753234558 5.080000e-10 76.8
10 TraesCS2D01G238900 chr2A 97.297 37 1 0 4693 4729 311160069 311160105 3.950000e-06 63.9
11 TraesCS2D01G238900 chr2B 97.986 1142 23 0 2655 3796 322461034 322462175 0.000000e+00 1982.0
12 TraesCS2D01G238900 chr2B 95.579 1244 39 5 1449 2692 322459793 322461020 0.000000e+00 1978.0
13 TraesCS2D01G238900 chr2B 95.125 800 33 5 616 1414 322458637 322459431 0.000000e+00 1256.0
14 TraesCS2D01G238900 chr2B 93.129 684 41 4 3830 4510 322645425 322644745 0.000000e+00 998.0
15 TraesCS2D01G238900 chr2B 95.079 630 26 3 3830 4459 322462179 322462803 0.000000e+00 987.0
16 TraesCS2D01G238900 chr2B 81.172 478 50 18 3 442 366872257 366872732 9.750000e-92 348.0
17 TraesCS2D01G238900 chr2B 96.032 126 5 0 3675 3800 322645673 322645548 6.210000e-49 206.0
18 TraesCS2D01G238900 chr1D 82.438 484 45 10 1 445 163386080 163385598 2.070000e-103 387.0
19 TraesCS2D01G238900 chr6D 81.915 470 52 21 3 442 18142607 18142141 2.690000e-97 366.0
20 TraesCS2D01G238900 chr3B 84.225 374 45 10 81 442 342206650 342207021 7.530000e-93 351.0
21 TraesCS2D01G238900 chr4A 81.144 472 53 23 3 442 272684742 272684275 3.510000e-91 346.0
22 TraesCS2D01G238900 chr4A 77.938 485 60 15 1 442 285955207 285955687 4.700000e-65 259.0
23 TraesCS2D01G238900 chr7B 83.110 373 49 11 81 442 297902391 297902022 1.270000e-85 327.0
24 TraesCS2D01G238900 chr5A 80.372 484 51 15 1 442 260501668 260501187 1.270000e-85 327.0
25 TraesCS2D01G238900 chr5A 79.917 483 54 17 1 442 214520109 214520589 9.880000e-82 315.0
26 TraesCS2D01G238900 chr7D 80.208 480 55 19 1 442 337106820 337107297 1.640000e-84 324.0
27 TraesCS2D01G238900 chr7D 77.479 484 61 19 1 442 325267212 325266735 3.660000e-61 246.0
28 TraesCS2D01G238900 chr4B 82.979 376 47 13 81 442 344723360 344722988 1.640000e-84 324.0
29 TraesCS2D01G238900 chr4B 100.000 45 0 0 4676 4720 246315718 246315762 3.030000e-12 84.2
30 TraesCS2D01G238900 chr7A 79.917 483 52 18 1 442 370937490 370937968 3.560000e-81 313.0
31 TraesCS2D01G238900 chr7A 79.710 483 52 17 1 442 371037792 371038269 1.650000e-79 307.0
32 TraesCS2D01G238900 chr7A 88.679 53 6 0 4676 4728 5187964 5187912 1.100000e-06 65.8
33 TraesCS2D01G238900 chr5D 81.347 386 47 12 80 442 188718461 188718078 1.670000e-74 291.0
34 TraesCS2D01G238900 chr3A 78.099 484 60 20 1 442 275974757 275974278 1.010000e-66 265.0
35 TraesCS2D01G238900 chr3D 94.828 58 3 0 4671 4728 481917309 481917366 1.810000e-14 91.6
36 TraesCS2D01G238900 chr4D 96.226 53 2 0 4676 4728 173576991 173576939 2.350000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G238900 chr2D 250202745 250207476 4731 False 8739.00 8739 100.00000 1 4732 1 chr2D.!!$F1 4731
1 TraesCS2D01G238900 chr2A 311154460 311160105 5645 False 1408.78 5011 93.22380 1 4729 5 chr2A.!!$F4 4728
2 TraesCS2D01G238900 chr2B 322458637 322462803 4166 False 1550.75 1982 95.94225 616 4459 4 chr2B.!!$F2 3843
3 TraesCS2D01G238900 chr2B 322644745 322645673 928 True 602.00 998 94.58050 3675 4510 2 chr2B.!!$R1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 659 0.030235 GGTGTTTGCTGGGAAACGTC 59.970 55.000 11.76 8.09 38.46 4.34 F
1171 1198 0.320374 TGCTCGTCGGAGGATTTGTT 59.680 50.000 0.27 0.00 40.80 2.83 F
2212 2572 1.271379 TGAAAGGCAGATGCAGCTTTG 59.729 47.619 0.00 0.00 44.36 2.77 F
2884 3295 1.904144 CATGTGCATGCTGTTGCTAC 58.096 50.000 20.33 7.20 43.18 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2504 2864 1.269723 GAGGCCAGTTACTTTGGTTGC 59.730 52.381 5.01 0.0 38.02 4.17 R
2629 2989 2.296752 TGACCACAACAATGCCATCAAG 59.703 45.455 0.00 0.0 0.00 3.02 R
3299 3710 0.538057 CGCCATTGCCATACCTGGAT 60.538 55.000 0.00 0.0 46.37 3.41 R
4595 5942 0.106268 ATGCATTGGCCATACCGGAA 60.106 50.000 9.46 0.0 43.94 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.032912 TAGAGGCCGTATGTGTGGGA 60.033 55.000 0.00 0.00 0.00 4.37
41 42 3.154710 GTGGGAAAACAAGAGTTAGGGG 58.845 50.000 0.00 0.00 36.84 4.79
42 43 2.787035 TGGGAAAACAAGAGTTAGGGGT 59.213 45.455 0.00 0.00 36.84 4.95
44 45 3.154710 GGAAAACAAGAGTTAGGGGTGG 58.845 50.000 0.00 0.00 36.84 4.61
48 49 3.503800 ACAAGAGTTAGGGGTGGTTTC 57.496 47.619 0.00 0.00 0.00 2.78
50 51 0.981943 AGAGTTAGGGGTGGTTTCGG 59.018 55.000 0.00 0.00 0.00 4.30
51 52 0.978907 GAGTTAGGGGTGGTTTCGGA 59.021 55.000 0.00 0.00 0.00 4.55
70 71 3.994000 CCTCCTCCAAGGGATCCC 58.006 66.667 24.59 24.59 35.59 3.85
90 110 1.750682 CGAAATTCCCCAGCCCTTAGG 60.751 57.143 0.00 0.00 0.00 2.69
103 123 1.470458 CCCTTAGGGCGTCGTTTAGAC 60.470 57.143 3.52 0.00 39.21 2.59
131 152 9.659830 TTGAGTTTTCTTAGATTAAAAGTTCGC 57.340 29.630 0.00 0.00 30.37 4.70
132 153 9.052759 TGAGTTTTCTTAGATTAAAAGTTCGCT 57.947 29.630 0.00 0.00 30.37 4.93
169 191 3.703001 ATTCAACGACCAGACCAAGAT 57.297 42.857 0.00 0.00 0.00 2.40
174 196 1.000955 ACGACCAGACCAAGATGTCAC 59.999 52.381 0.00 0.00 37.73 3.67
198 220 7.759433 CACATAACCCCACTTTCATCAATAAAC 59.241 37.037 0.00 0.00 0.00 2.01
206 228 8.150296 CCCACTTTCATCAATAAACTTTTCCTT 58.850 33.333 0.00 0.00 0.00 3.36
269 291 2.034939 TGTTCTTCGTTTGCTCGTAGGA 59.965 45.455 0.00 0.00 0.00 2.94
274 296 5.100259 TCTTCGTTTGCTCGTAGGAAATAG 58.900 41.667 5.24 4.12 37.83 1.73
277 299 4.157289 TCGTTTGCTCGTAGGAAATAGACT 59.843 41.667 5.24 0.00 37.83 3.24
318 342 2.270850 GGCGTGGTCAATAGCCCA 59.729 61.111 0.00 0.00 43.54 5.36
322 346 0.880278 CGTGGTCAATAGCCCATCGG 60.880 60.000 0.00 0.00 32.32 4.18
324 348 1.072331 GTGGTCAATAGCCCATCGGAT 59.928 52.381 0.00 0.00 32.32 4.18
350 375 2.740826 GCGGTTGCTAAGGTGCGA 60.741 61.111 0.00 0.00 38.39 5.10
352 377 1.666553 CGGTTGCTAAGGTGCGACA 60.667 57.895 8.80 0.00 46.28 4.35
368 394 0.454600 GACATCTCCGCACCTCGTAA 59.545 55.000 0.00 0.00 36.19 3.18
371 397 0.311165 ATCTCCGCACCTCGTAATCG 59.689 55.000 0.00 0.00 36.19 3.34
376 402 0.663568 CGCACCTCGTAATCGGATCC 60.664 60.000 0.00 0.00 37.69 3.36
381 407 3.028850 ACCTCGTAATCGGATCCTCAAA 58.971 45.455 10.75 0.00 37.69 2.69
382 408 3.449737 ACCTCGTAATCGGATCCTCAAAA 59.550 43.478 10.75 0.00 37.69 2.44
384 410 5.057149 CCTCGTAATCGGATCCTCAAAATT 58.943 41.667 10.75 4.59 37.69 1.82
399 425 6.099557 TCCTCAAAATTGACTCCCACAAAAAT 59.900 34.615 0.00 0.00 32.90 1.82
400 426 6.203338 CCTCAAAATTGACTCCCACAAAAATG 59.797 38.462 0.00 0.00 32.90 2.32
405 432 7.781324 AATTGACTCCCACAAAAATGATAGT 57.219 32.000 0.00 0.00 0.00 2.12
411 438 9.178758 GACTCCCACAAAAATGATAGTTATCTT 57.821 33.333 1.26 0.00 33.88 2.40
442 469 1.405821 CGAGACACCTTCGCCTCTATT 59.594 52.381 0.00 0.00 0.00 1.73
443 470 2.617308 CGAGACACCTTCGCCTCTATTA 59.383 50.000 0.00 0.00 0.00 0.98
444 471 3.304123 CGAGACACCTTCGCCTCTATTAG 60.304 52.174 0.00 0.00 0.00 1.73
460 487 7.199541 CTCTATTAGGAATGGATGCAAAGTG 57.800 40.000 0.00 0.00 0.00 3.16
461 488 6.899089 TCTATTAGGAATGGATGCAAAGTGA 58.101 36.000 0.00 0.00 0.00 3.41
462 489 6.994496 TCTATTAGGAATGGATGCAAAGTGAG 59.006 38.462 0.00 0.00 0.00 3.51
463 490 2.731572 AGGAATGGATGCAAAGTGAGG 58.268 47.619 0.00 0.00 0.00 3.86
464 491 1.753073 GGAATGGATGCAAAGTGAGGG 59.247 52.381 0.00 0.00 0.00 4.30
465 492 1.135721 GAATGGATGCAAAGTGAGGGC 59.864 52.381 0.00 0.00 0.00 5.19
466 493 0.685458 ATGGATGCAAAGTGAGGGCC 60.685 55.000 0.00 0.00 0.00 5.80
467 494 2.054453 GGATGCAAAGTGAGGGCCC 61.054 63.158 16.46 16.46 0.00 5.80
468 495 2.037847 ATGCAAAGTGAGGGCCCC 59.962 61.111 21.43 11.17 0.00 5.80
469 496 3.944250 ATGCAAAGTGAGGGCCCCG 62.944 63.158 21.43 0.00 0.00 5.73
470 497 4.344865 GCAAAGTGAGGGCCCCGA 62.345 66.667 21.43 0.85 0.00 5.14
471 498 2.434331 CAAAGTGAGGGCCCCGAA 59.566 61.111 21.43 0.00 0.00 4.30
472 499 1.000896 CAAAGTGAGGGCCCCGAAT 60.001 57.895 21.43 0.08 0.00 3.34
473 500 1.000896 AAAGTGAGGGCCCCGAATG 60.001 57.895 21.43 0.00 0.00 2.67
474 501 1.497309 AAAGTGAGGGCCCCGAATGA 61.497 55.000 21.43 0.00 0.00 2.57
475 502 1.915078 AAGTGAGGGCCCCGAATGAG 61.915 60.000 21.43 0.00 0.00 2.90
476 503 2.285368 TGAGGGCCCCGAATGAGT 60.285 61.111 21.43 0.00 0.00 3.41
477 504 1.002403 TGAGGGCCCCGAATGAGTA 59.998 57.895 21.43 0.00 0.00 2.59
478 505 0.619255 TGAGGGCCCCGAATGAGTAA 60.619 55.000 21.43 0.00 0.00 2.24
479 506 0.544697 GAGGGCCCCGAATGAGTAAA 59.455 55.000 21.43 0.00 0.00 2.01
480 507 0.546598 AGGGCCCCGAATGAGTAAAG 59.453 55.000 21.43 0.00 0.00 1.85
481 508 0.465642 GGGCCCCGAATGAGTAAAGG 60.466 60.000 12.23 0.00 0.00 3.11
501 528 6.672266 AAGGTGATGTCACTTCTCTAAGAA 57.328 37.500 12.43 0.00 45.73 2.52
514 541 2.097036 TCTAAGAATTCGGTCCGAGCA 58.903 47.619 14.79 0.28 37.14 4.26
559 586 2.813061 AGTTTCACTGTTTGCATGTGC 58.187 42.857 0.00 0.00 42.50 4.57
568 595 1.069049 GTTTGCATGTGCTCCAAAGGT 59.931 47.619 6.55 0.00 42.66 3.50
572 599 1.068055 GCATGTGCTCCAAAGGTCAAG 60.068 52.381 0.00 0.00 38.21 3.02
575 602 1.202806 TGTGCTCCAAAGGTCAAGAGG 60.203 52.381 0.00 0.00 0.00 3.69
576 603 1.140312 TGCTCCAAAGGTCAAGAGGT 58.860 50.000 0.00 0.00 0.00 3.85
577 604 1.202806 TGCTCCAAAGGTCAAGAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
578 605 1.202818 GCTCCAAAGGTCAAGAGGTGT 60.203 52.381 0.00 0.00 0.00 4.16
579 606 2.749800 GCTCCAAAGGTCAAGAGGTGTT 60.750 50.000 0.00 0.00 0.00 3.32
580 607 3.555966 CTCCAAAGGTCAAGAGGTGTTT 58.444 45.455 0.00 0.00 0.00 2.83
581 608 3.551846 TCCAAAGGTCAAGAGGTGTTTC 58.448 45.455 0.00 0.00 0.00 2.78
582 609 3.202151 TCCAAAGGTCAAGAGGTGTTTCT 59.798 43.478 0.00 0.00 0.00 2.52
583 610 3.954258 CCAAAGGTCAAGAGGTGTTTCTT 59.046 43.478 0.00 0.00 37.90 2.52
600 627 5.600908 TTTCTTGGGAAACGTTAAGATCG 57.399 39.130 11.05 0.00 36.63 3.69
601 628 2.997986 TCTTGGGAAACGTTAAGATCGC 59.002 45.455 0.00 4.43 0.00 4.58
602 629 2.459060 TGGGAAACGTTAAGATCGCA 57.541 45.000 11.96 11.96 33.01 5.10
603 630 2.768698 TGGGAAACGTTAAGATCGCAA 58.231 42.857 13.20 0.78 32.73 4.85
604 631 3.139850 TGGGAAACGTTAAGATCGCAAA 58.860 40.909 13.20 0.00 32.73 3.68
605 632 3.187637 TGGGAAACGTTAAGATCGCAAAG 59.812 43.478 13.20 0.00 32.73 2.77
606 633 3.425758 GGGAAACGTTAAGATCGCAAAGG 60.426 47.826 0.00 0.00 0.00 3.11
607 634 2.894307 AACGTTAAGATCGCAAAGGC 57.106 45.000 0.00 0.00 0.00 4.35
608 635 1.084289 ACGTTAAGATCGCAAAGGCC 58.916 50.000 0.00 0.00 36.38 5.19
609 636 1.083489 CGTTAAGATCGCAAAGGCCA 58.917 50.000 5.01 0.00 36.38 5.36
610 637 1.466950 CGTTAAGATCGCAAAGGCCAA 59.533 47.619 5.01 0.00 36.38 4.52
611 638 2.097466 CGTTAAGATCGCAAAGGCCAAT 59.903 45.455 5.01 0.00 36.38 3.16
612 639 3.311322 CGTTAAGATCGCAAAGGCCAATA 59.689 43.478 5.01 0.00 36.38 1.90
630 657 1.600023 TAGGTGTTTGCTGGGAAACG 58.400 50.000 11.76 0.00 38.46 3.60
632 659 0.030235 GGTGTTTGCTGGGAAACGTC 59.970 55.000 11.76 8.09 38.46 4.34
664 691 8.759641 CGGATGTTCTCAGATAACATTTCTTAG 58.240 37.037 13.81 2.06 45.24 2.18
748 775 7.571919 TGCAGAAGATCCTGATATTTTCTCTT 58.428 34.615 3.41 0.00 36.29 2.85
865 892 3.201487 TCCAACCATCTCGTCTCCTACTA 59.799 47.826 0.00 0.00 0.00 1.82
1171 1198 0.320374 TGCTCGTCGGAGGATTTGTT 59.680 50.000 0.27 0.00 40.80 2.83
1265 1292 6.072452 CCTTAAGCTGGTTTTTCCTACTTCTG 60.072 42.308 0.00 0.00 35.12 3.02
1416 1444 7.765695 AACATTTTGATGTGAGTTATGGAGT 57.234 32.000 0.00 0.00 34.56 3.85
1417 1445 8.862325 AACATTTTGATGTGAGTTATGGAGTA 57.138 30.769 0.00 0.00 34.56 2.59
1418 1446 8.862325 ACATTTTGATGTGAGTTATGGAGTAA 57.138 30.769 0.00 0.00 32.79 2.24
1419 1447 9.295825 ACATTTTGATGTGAGTTATGGAGTAAA 57.704 29.630 0.00 0.00 32.79 2.01
1459 1819 7.228108 GGGGGACTTAGTATTTAGTATGTTTGC 59.772 40.741 0.00 0.00 0.00 3.68
1607 1967 4.993705 TTTCAGGTTGGACAGTCCTTAT 57.006 40.909 20.82 1.45 37.46 1.73
1636 1996 7.942341 TCTTTATGGTTCATTCAGTGTTAGGTT 59.058 33.333 0.00 0.00 0.00 3.50
1757 2117 6.200097 GCCTAGGTGTGTTAATTGTTTGTTTG 59.800 38.462 11.31 0.00 0.00 2.93
1913 2273 7.881643 ACATATTAGTCAATTCGAGCTCATC 57.118 36.000 15.40 0.00 0.00 2.92
2048 2408 3.307242 GCATCGGTAGTGTTTAAGCTGAG 59.693 47.826 0.00 0.00 0.00 3.35
2212 2572 1.271379 TGAAAGGCAGATGCAGCTTTG 59.729 47.619 0.00 0.00 44.36 2.77
2231 2591 4.379339 TTGTTTGTTGTCCTTGGTTAGC 57.621 40.909 0.00 0.00 0.00 3.09
2354 2714 4.398319 CTTCAAATGGACACACTTACCCT 58.602 43.478 0.00 0.00 0.00 4.34
2483 2843 6.074463 CGTGTTAGAACTTCAGGTGTAAAGTC 60.074 42.308 0.00 0.00 34.71 3.01
2629 2989 5.861251 CGCAACTGATATCTTCTATGACTCC 59.139 44.000 3.98 0.00 0.00 3.85
2682 3093 2.092429 TGCTTCCAGTTCTGACCTGTTT 60.092 45.455 1.45 0.00 0.00 2.83
2820 3231 2.151202 AGTTTCACTGGTTACCATGCG 58.849 47.619 3.88 0.00 30.82 4.73
2884 3295 1.904144 CATGTGCATGCTGTTGCTAC 58.096 50.000 20.33 7.20 43.18 3.58
3016 3427 4.717280 TGGGTTTGGGTTTGTTACATTCTT 59.283 37.500 0.00 0.00 0.00 2.52
3299 3710 0.042731 CTGGAAGGTACTCTCCCCCA 59.957 60.000 10.20 0.00 38.49 4.96
3397 3808 1.488393 TGATCGTTATGATGGTGGCCA 59.512 47.619 0.00 0.00 37.47 5.36
3425 3836 2.158827 TGATGATCGTTATGGTGGTGGG 60.159 50.000 0.00 0.00 0.00 4.61
3499 3910 2.032549 GTGGTGATCGTTATGCATCAGC 60.033 50.000 0.19 5.10 44.40 4.26
3543 3954 1.152652 GAGAGAGATGGAGGGCGGA 60.153 63.158 0.00 0.00 0.00 5.54
3792 4203 4.273318 AGATTCAATTCCCAGTTGCTACC 58.727 43.478 0.00 0.00 0.00 3.18
3797 4284 2.032965 TTCCCAGTTGCTACCACCTA 57.967 50.000 0.00 0.00 0.00 3.08
3946 4463 1.819632 CTAGGCAATGGGCGACACC 60.820 63.158 0.00 0.00 46.16 4.16
3988 4505 5.730296 ATTGTGTAACTACTCTGCAGTCT 57.270 39.130 14.67 2.22 38.04 3.24
4029 4546 9.046296 ACTACTGTTTTAGTTTTGACTCATCTG 57.954 33.333 0.00 0.00 40.89 2.90
4193 4710 8.408601 GCATTTTCAAGATTATGTACCATCTGT 58.591 33.333 0.00 0.00 29.78 3.41
4409 4945 3.001939 CGTATATCTTTTCACCCGCCAAC 59.998 47.826 0.00 0.00 0.00 3.77
4411 4947 0.958822 ATCTTTTCACCCGCCAACAC 59.041 50.000 0.00 0.00 0.00 3.32
4467 5004 4.162509 AGCCTCAACCAAGTCTATCCTTAC 59.837 45.833 0.00 0.00 0.00 2.34
4480 5017 1.221840 CCTTACGATGCAGGGTGCT 59.778 57.895 0.00 0.00 45.31 4.40
4485 5022 2.240493 ACGATGCAGGGTGCTTATAC 57.760 50.000 0.00 0.00 45.31 1.47
4486 5023 1.139989 CGATGCAGGGTGCTTATACG 58.860 55.000 0.00 0.00 45.31 3.06
4487 5024 1.512926 GATGCAGGGTGCTTATACGG 58.487 55.000 0.00 0.00 45.31 4.02
4488 5025 1.070134 GATGCAGGGTGCTTATACGGA 59.930 52.381 0.00 0.00 45.31 4.69
4489 5026 0.464036 TGCAGGGTGCTTATACGGAG 59.536 55.000 0.00 0.00 45.31 4.63
4490 5027 0.750850 GCAGGGTGCTTATACGGAGA 59.249 55.000 0.00 0.00 40.96 3.71
4491 5028 1.269831 GCAGGGTGCTTATACGGAGAG 60.270 57.143 0.00 0.00 40.96 3.20
4492 5029 1.341531 CAGGGTGCTTATACGGAGAGG 59.658 57.143 0.00 0.00 0.00 3.69
4522 5869 1.151627 GGGGGCTACCTCTTAGGGTAT 59.848 57.143 0.00 0.00 40.58 2.73
4523 5870 2.258109 GGGGCTACCTCTTAGGGTATG 58.742 57.143 0.00 0.00 40.58 2.39
4524 5871 2.427445 GGGGCTACCTCTTAGGGTATGT 60.427 54.545 0.00 0.00 40.58 2.29
4525 5872 2.898612 GGGCTACCTCTTAGGGTATGTC 59.101 54.545 0.00 0.00 40.58 3.06
4526 5873 3.438225 GGGCTACCTCTTAGGGTATGTCT 60.438 52.174 0.00 0.00 40.58 3.41
4527 5874 4.224762 GGCTACCTCTTAGGGTATGTCTT 58.775 47.826 0.00 0.00 40.58 3.01
4528 5875 5.392125 GGCTACCTCTTAGGGTATGTCTTA 58.608 45.833 0.00 0.00 40.58 2.10
4529 5876 5.477637 GGCTACCTCTTAGGGTATGTCTTAG 59.522 48.000 0.00 0.00 40.58 2.18
4530 5877 5.477637 GCTACCTCTTAGGGTATGTCTTAGG 59.522 48.000 0.00 0.00 40.58 2.69
4531 5878 4.817286 ACCTCTTAGGGTATGTCTTAGGG 58.183 47.826 0.00 0.00 40.58 3.53
4532 5879 4.234693 ACCTCTTAGGGTATGTCTTAGGGT 59.765 45.833 0.00 0.00 40.58 4.34
4533 5880 5.437714 ACCTCTTAGGGTATGTCTTAGGGTA 59.562 44.000 0.00 0.00 40.58 3.69
4534 5881 6.105890 ACCTCTTAGGGTATGTCTTAGGGTAT 59.894 42.308 0.00 0.00 40.58 2.73
4535 5882 6.437793 CCTCTTAGGGTATGTCTTAGGGTATG 59.562 46.154 0.00 0.00 0.00 2.39
4536 5883 6.320518 TCTTAGGGTATGTCTTAGGGTATGG 58.679 44.000 0.00 0.00 0.00 2.74
4537 5884 3.248888 AGGGTATGTCTTAGGGTATGGC 58.751 50.000 0.00 0.00 0.00 4.40
4538 5885 2.305052 GGGTATGTCTTAGGGTATGGCC 59.695 54.545 0.00 0.00 0.00 5.36
4539 5886 2.976882 GGTATGTCTTAGGGTATGGCCA 59.023 50.000 8.56 8.56 39.65 5.36
4540 5887 3.393278 GGTATGTCTTAGGGTATGGCCAA 59.607 47.826 10.96 0.00 39.65 4.52
4541 5888 3.577805 ATGTCTTAGGGTATGGCCAAC 57.422 47.619 10.96 9.65 39.65 3.77
4542 5889 1.208535 TGTCTTAGGGTATGGCCAACG 59.791 52.381 10.96 0.00 39.65 4.10
4543 5890 0.179468 TCTTAGGGTATGGCCAACGC 59.821 55.000 10.96 17.31 39.65 4.84
4544 5891 0.107410 CTTAGGGTATGGCCAACGCA 60.107 55.000 25.59 14.99 39.65 5.24
4545 5892 0.548989 TTAGGGTATGGCCAACGCAT 59.451 50.000 25.59 17.25 39.65 4.73
4546 5893 1.425694 TAGGGTATGGCCAACGCATA 58.574 50.000 25.59 16.60 39.65 3.14
4547 5894 0.108585 AGGGTATGGCCAACGCATAG 59.891 55.000 25.59 0.00 39.65 2.23
4548 5895 1.515521 GGGTATGGCCAACGCATAGC 61.516 60.000 10.96 6.76 39.65 2.97
4550 5897 1.228124 TATGGCCAACGCATAGCCC 60.228 57.895 10.96 0.00 46.55 5.19
4551 5898 1.705002 TATGGCCAACGCATAGCCCT 61.705 55.000 10.96 0.00 46.55 5.19
4552 5899 1.705002 ATGGCCAACGCATAGCCCTA 61.705 55.000 10.96 0.00 46.55 3.53
4553 5900 1.598130 GGCCAACGCATAGCCCTAG 60.598 63.158 0.00 0.00 41.00 3.02
4554 5901 1.598130 GCCAACGCATAGCCCTAGG 60.598 63.158 0.06 0.06 34.03 3.02
4555 5902 1.830145 CCAACGCATAGCCCTAGGT 59.170 57.895 8.29 0.00 0.00 3.08
4556 5903 0.532862 CCAACGCATAGCCCTAGGTG 60.533 60.000 8.29 0.00 34.02 4.00
4557 5904 0.464036 CAACGCATAGCCCTAGGTGA 59.536 55.000 8.29 0.00 32.42 4.02
4558 5905 1.070758 CAACGCATAGCCCTAGGTGAT 59.929 52.381 8.29 0.33 32.42 3.06
4559 5906 0.681733 ACGCATAGCCCTAGGTGATG 59.318 55.000 8.29 8.99 32.42 3.07
4560 5907 0.671781 CGCATAGCCCTAGGTGATGC 60.672 60.000 21.54 21.54 38.57 3.91
4561 5908 0.689623 GCATAGCCCTAGGTGATGCT 59.310 55.000 23.08 19.03 38.75 3.79
4562 5909 1.072965 GCATAGCCCTAGGTGATGCTT 59.927 52.381 23.08 8.63 38.75 3.91
4563 5910 2.303022 GCATAGCCCTAGGTGATGCTTA 59.697 50.000 23.08 9.51 38.75 3.09
4564 5911 3.054802 GCATAGCCCTAGGTGATGCTTAT 60.055 47.826 23.08 10.86 38.75 1.73
4565 5912 4.162320 GCATAGCCCTAGGTGATGCTTATA 59.838 45.833 23.08 6.79 38.75 0.98
4566 5913 5.665459 CATAGCCCTAGGTGATGCTTATAC 58.335 45.833 14.47 0.00 35.34 1.47
4567 5914 2.563179 AGCCCTAGGTGATGCTTATACG 59.437 50.000 8.29 0.00 0.00 3.06
4568 5915 2.353803 GCCCTAGGTGATGCTTATACGG 60.354 54.545 8.29 0.00 0.00 4.02
4569 5916 3.162666 CCCTAGGTGATGCTTATACGGA 58.837 50.000 8.29 0.00 0.00 4.69
4570 5917 3.193691 CCCTAGGTGATGCTTATACGGAG 59.806 52.174 8.29 0.00 0.00 4.63
4571 5918 4.079970 CCTAGGTGATGCTTATACGGAGA 58.920 47.826 0.00 0.00 0.00 3.71
4572 5919 4.156922 CCTAGGTGATGCTTATACGGAGAG 59.843 50.000 0.00 0.00 0.00 3.20
4573 5920 2.894126 AGGTGATGCTTATACGGAGAGG 59.106 50.000 0.00 0.00 0.00 3.69
4574 5921 2.028930 GGTGATGCTTATACGGAGAGGG 60.029 54.545 0.00 0.00 0.00 4.30
4575 5922 2.891580 GTGATGCTTATACGGAGAGGGA 59.108 50.000 0.00 0.00 0.00 4.20
4576 5923 3.057174 GTGATGCTTATACGGAGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
4577 5924 3.181433 TGATGCTTATACGGAGAGGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
4578 5925 2.865079 TGCTTATACGGAGAGGGAGAG 58.135 52.381 0.00 0.00 0.00 3.20
4579 5926 2.442126 TGCTTATACGGAGAGGGAGAGA 59.558 50.000 0.00 0.00 0.00 3.10
4580 5927 3.078837 GCTTATACGGAGAGGGAGAGAG 58.921 54.545 0.00 0.00 0.00 3.20
4581 5928 3.244630 GCTTATACGGAGAGGGAGAGAGA 60.245 52.174 0.00 0.00 0.00 3.10
4582 5929 4.575885 CTTATACGGAGAGGGAGAGAGAG 58.424 52.174 0.00 0.00 0.00 3.20
4583 5930 1.133363 TACGGAGAGGGAGAGAGAGG 58.867 60.000 0.00 0.00 0.00 3.69
4584 5931 1.150536 CGGAGAGGGAGAGAGAGGG 59.849 68.421 0.00 0.00 0.00 4.30
4585 5932 1.541672 GGAGAGGGAGAGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79
4586 5933 1.541672 GAGAGGGAGAGAGAGGGGG 59.458 68.421 0.00 0.00 0.00 5.40
4624 5971 1.231068 CCAATGCATAGCCCCAGGT 59.769 57.895 0.00 0.00 0.00 4.00
4631 5978 0.825010 CATAGCCCCAGGTTGATGCC 60.825 60.000 0.00 0.00 0.00 4.40
4637 5984 2.676121 CAGGTTGATGCCCCGCAA 60.676 61.111 0.00 0.00 43.62 4.85
4638 5985 2.361610 AGGTTGATGCCCCGCAAG 60.362 61.111 0.00 0.00 43.62 4.01
4639 5986 2.676471 GGTTGATGCCCCGCAAGT 60.676 61.111 0.00 0.00 43.62 3.16
4640 5987 2.275380 GGTTGATGCCCCGCAAGTT 61.275 57.895 0.00 0.00 43.62 2.66
4641 5988 0.963355 GGTTGATGCCCCGCAAGTTA 60.963 55.000 0.00 0.00 43.62 2.24
4642 5989 1.102978 GTTGATGCCCCGCAAGTTAT 58.897 50.000 0.00 0.00 43.62 1.89
4643 5990 1.102154 TTGATGCCCCGCAAGTTATG 58.898 50.000 0.00 0.00 43.62 1.90
4644 5991 0.034574 TGATGCCCCGCAAGTTATGT 60.035 50.000 0.00 0.00 43.62 2.29
4645 5992 1.210722 TGATGCCCCGCAAGTTATGTA 59.789 47.619 0.00 0.00 43.62 2.29
4646 5993 1.873591 GATGCCCCGCAAGTTATGTAG 59.126 52.381 0.00 0.00 43.62 2.74
4647 5994 0.906066 TGCCCCGCAAGTTATGTAGA 59.094 50.000 0.00 0.00 34.76 2.59
4648 5995 1.279558 TGCCCCGCAAGTTATGTAGAA 59.720 47.619 0.00 0.00 34.76 2.10
4649 5996 2.092646 TGCCCCGCAAGTTATGTAGAAT 60.093 45.455 0.00 0.00 34.76 2.40
4650 5997 2.548480 GCCCCGCAAGTTATGTAGAATC 59.452 50.000 0.00 0.00 0.00 2.52
4651 5998 2.800544 CCCCGCAAGTTATGTAGAATCG 59.199 50.000 0.00 0.00 0.00 3.34
4652 5999 2.800544 CCCGCAAGTTATGTAGAATCGG 59.199 50.000 0.00 0.00 0.00 4.18
4653 6000 3.491964 CCCGCAAGTTATGTAGAATCGGA 60.492 47.826 0.00 0.00 36.77 4.55
4654 6001 4.307432 CCGCAAGTTATGTAGAATCGGAT 58.693 43.478 0.00 0.00 36.77 4.18
4655 6002 5.466819 CCGCAAGTTATGTAGAATCGGATA 58.533 41.667 0.00 0.00 36.77 2.59
4656 6003 6.100004 CCGCAAGTTATGTAGAATCGGATAT 58.900 40.000 0.00 0.00 36.77 1.63
4657 6004 6.253727 CCGCAAGTTATGTAGAATCGGATATC 59.746 42.308 0.00 0.00 36.77 1.63
4658 6005 6.806739 CGCAAGTTATGTAGAATCGGATATCA 59.193 38.462 4.83 0.00 0.00 2.15
4659 6006 7.008719 CGCAAGTTATGTAGAATCGGATATCAG 59.991 40.741 4.83 0.00 0.00 2.90
4660 6007 7.276658 GCAAGTTATGTAGAATCGGATATCAGG 59.723 40.741 4.83 0.00 0.00 3.86
4661 6008 8.523658 CAAGTTATGTAGAATCGGATATCAGGA 58.476 37.037 4.83 1.56 0.00 3.86
4662 6009 8.651589 AGTTATGTAGAATCGGATATCAGGAA 57.348 34.615 4.83 0.00 0.00 3.36
4663 6010 9.090103 AGTTATGTAGAATCGGATATCAGGAAA 57.910 33.333 4.83 0.00 0.00 3.13
4664 6011 9.706691 GTTATGTAGAATCGGATATCAGGAAAA 57.293 33.333 4.83 0.00 0.00 2.29
4665 6012 9.929180 TTATGTAGAATCGGATATCAGGAAAAG 57.071 33.333 4.83 0.00 0.00 2.27
4666 6013 7.361457 TGTAGAATCGGATATCAGGAAAAGT 57.639 36.000 4.83 0.00 0.00 2.66
4667 6014 8.473358 TGTAGAATCGGATATCAGGAAAAGTA 57.527 34.615 4.83 0.00 0.00 2.24
4668 6015 8.577296 TGTAGAATCGGATATCAGGAAAAGTAG 58.423 37.037 4.83 0.00 0.00 2.57
4669 6016 6.998802 AGAATCGGATATCAGGAAAAGTAGG 58.001 40.000 4.83 0.00 0.00 3.18
4670 6017 6.782988 AGAATCGGATATCAGGAAAAGTAGGA 59.217 38.462 4.83 0.00 0.00 2.94
4671 6018 6.597832 ATCGGATATCAGGAAAAGTAGGAG 57.402 41.667 4.83 0.00 0.00 3.69
4672 6019 4.833380 TCGGATATCAGGAAAAGTAGGAGG 59.167 45.833 4.83 0.00 0.00 4.30
4673 6020 4.589374 CGGATATCAGGAAAAGTAGGAGGT 59.411 45.833 4.83 0.00 0.00 3.85
4674 6021 5.070580 CGGATATCAGGAAAAGTAGGAGGTT 59.929 44.000 4.83 0.00 0.00 3.50
4675 6022 6.267014 CGGATATCAGGAAAAGTAGGAGGTTA 59.733 42.308 4.83 0.00 0.00 2.85
4676 6023 7.038941 CGGATATCAGGAAAAGTAGGAGGTTAT 60.039 40.741 4.83 0.00 0.00 1.89
4677 6024 8.097662 GGATATCAGGAAAAGTAGGAGGTTATG 58.902 40.741 4.83 0.00 0.00 1.90
4678 6025 6.893020 ATCAGGAAAAGTAGGAGGTTATGT 57.107 37.500 0.00 0.00 0.00 2.29
4679 6026 7.989947 ATCAGGAAAAGTAGGAGGTTATGTA 57.010 36.000 0.00 0.00 0.00 2.29
4680 6027 7.419711 TCAGGAAAAGTAGGAGGTTATGTAG 57.580 40.000 0.00 0.00 0.00 2.74
4681 6028 6.383147 TCAGGAAAAGTAGGAGGTTATGTAGG 59.617 42.308 0.00 0.00 0.00 3.18
4682 6029 6.383147 CAGGAAAAGTAGGAGGTTATGTAGGA 59.617 42.308 0.00 0.00 0.00 2.94
4683 6030 7.071321 CAGGAAAAGTAGGAGGTTATGTAGGAT 59.929 40.741 0.00 0.00 0.00 3.24
4684 6031 7.290481 AGGAAAAGTAGGAGGTTATGTAGGATC 59.710 40.741 0.00 0.00 0.00 3.36
4685 6032 6.651975 AAAGTAGGAGGTTATGTAGGATCG 57.348 41.667 0.00 0.00 0.00 3.69
4686 6033 4.664392 AGTAGGAGGTTATGTAGGATCGG 58.336 47.826 0.00 0.00 0.00 4.18
4687 6034 3.897657 AGGAGGTTATGTAGGATCGGA 57.102 47.619 0.00 0.00 0.00 4.55
4688 6035 4.405756 AGGAGGTTATGTAGGATCGGAT 57.594 45.455 0.00 0.00 0.00 4.18
4689 6036 5.531753 AGGAGGTTATGTAGGATCGGATA 57.468 43.478 0.00 0.00 0.00 2.59
4690 6037 6.093617 AGGAGGTTATGTAGGATCGGATAT 57.906 41.667 0.00 0.00 0.00 1.63
4691 6038 6.130569 AGGAGGTTATGTAGGATCGGATATC 58.869 44.000 0.00 0.00 0.00 1.63
4720 6067 0.968901 AGGTTCGGATGGTGTAGCGA 60.969 55.000 0.00 0.00 0.00 4.93
4729 6076 3.181475 GGATGGTGTAGCGAGATTCTCAA 60.181 47.826 13.88 0.00 0.00 3.02
4730 6077 3.232213 TGGTGTAGCGAGATTCTCAAC 57.768 47.619 13.88 8.69 0.00 3.18
4731 6078 2.560981 TGGTGTAGCGAGATTCTCAACA 59.439 45.455 13.88 10.90 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.524414 GTTTTCCCACACATACGGCC 59.476 55.000 0.00 0.00 0.00 6.13
14 15 5.767816 AACTCTTGTTTTCCCACACATAC 57.232 39.130 0.00 0.00 31.37 2.39
25 26 3.965470 ACCACCCCTAACTCTTGTTTT 57.035 42.857 0.00 0.00 37.59 2.43
44 45 0.036294 CTTGGAGGAGGGTCCGAAAC 60.036 60.000 0.00 0.00 42.75 2.78
54 55 0.691078 TTCGGGATCCCTTGGAGGAG 60.691 60.000 28.42 10.37 39.95 3.69
66 67 1.230212 GGCTGGGGAATTTCGGGAT 59.770 57.895 0.00 0.00 0.00 3.85
70 71 1.680338 CTAAGGGCTGGGGAATTTCG 58.320 55.000 0.00 0.00 0.00 3.46
94 114 9.760077 ATCTAAGAAAACTCAAAGTCTAAACGA 57.240 29.630 0.00 0.00 0.00 3.85
114 134 7.619571 GCGGCTATAGCGAACTTTTAATCTAAG 60.620 40.741 18.30 0.00 43.26 2.18
129 150 0.870307 ACGAAGTTGCGGCTATAGCG 60.870 55.000 18.30 14.14 37.78 4.26
131 152 4.295870 TGAATACGAAGTTGCGGCTATAG 58.704 43.478 0.00 0.00 37.78 1.31
132 153 4.310357 TGAATACGAAGTTGCGGCTATA 57.690 40.909 0.00 0.00 37.78 1.31
163 184 3.016736 GTGGGGTTATGTGACATCTTGG 58.983 50.000 0.00 0.00 0.00 3.61
169 191 3.866703 TGAAAGTGGGGTTATGTGACA 57.133 42.857 0.00 0.00 0.00 3.58
174 196 8.066612 AGTTTATTGATGAAAGTGGGGTTATG 57.933 34.615 0.00 0.00 0.00 1.90
198 220 9.364989 TGGATATTGCGAATTTAAAAGGAAAAG 57.635 29.630 0.00 0.00 0.00 2.27
230 252 7.307396 CGAAGAACAAGCAAGAAACTGAGATTA 60.307 37.037 0.00 0.00 0.00 1.75
245 267 1.003866 ACGAGCAAACGAAGAACAAGC 60.004 47.619 5.12 0.00 37.03 4.01
252 274 5.004535 GTCTATTTCCTACGAGCAAACGAAG 59.995 44.000 5.12 0.00 37.03 3.79
277 299 2.338620 CGCAACCTGACCACGAGA 59.661 61.111 0.00 0.00 0.00 4.04
318 342 0.539986 ACCGCTAACCAACATCCGAT 59.460 50.000 0.00 0.00 0.00 4.18
322 346 3.694889 GCAACCGCTAACCAACATC 57.305 52.632 0.00 0.00 34.30 3.06
350 375 1.067212 GATTACGAGGTGCGGAGATGT 59.933 52.381 0.00 0.00 46.49 3.06
352 377 0.311165 CGATTACGAGGTGCGGAGAT 59.689 55.000 0.00 0.00 46.49 2.75
362 387 5.753438 TCAATTTTGAGGATCCGATTACGAG 59.247 40.000 5.98 0.00 35.73 4.18
368 394 4.455606 GGAGTCAATTTTGAGGATCCGAT 58.544 43.478 5.98 0.00 37.98 4.18
371 397 3.696548 GTGGGAGTCAATTTTGAGGATCC 59.303 47.826 2.48 2.48 37.98 3.36
376 402 6.985645 TCATTTTTGTGGGAGTCAATTTTGAG 59.014 34.615 0.00 0.00 37.98 3.02
381 407 7.781324 ACTATCATTTTTGTGGGAGTCAATT 57.219 32.000 0.00 0.00 0.00 2.32
382 408 7.781324 AACTATCATTTTTGTGGGAGTCAAT 57.219 32.000 0.00 0.00 0.00 2.57
384 410 8.328758 AGATAACTATCATTTTTGTGGGAGTCA 58.671 33.333 0.00 0.00 35.17 3.41
415 442 2.795470 GGCGAAGGTGTCTCGATATTTC 59.205 50.000 0.00 0.00 0.00 2.17
425 452 2.957006 TCCTAATAGAGGCGAAGGTGTC 59.043 50.000 0.00 0.00 46.25 3.67
442 469 3.371917 CCCTCACTTTGCATCCATTCCTA 60.372 47.826 0.00 0.00 0.00 2.94
443 470 2.622452 CCCTCACTTTGCATCCATTCCT 60.622 50.000 0.00 0.00 0.00 3.36
444 471 1.753073 CCCTCACTTTGCATCCATTCC 59.247 52.381 0.00 0.00 0.00 3.01
445 472 1.135721 GCCCTCACTTTGCATCCATTC 59.864 52.381 0.00 0.00 0.00 2.67
446 473 1.188863 GCCCTCACTTTGCATCCATT 58.811 50.000 0.00 0.00 0.00 3.16
447 474 0.685458 GGCCCTCACTTTGCATCCAT 60.685 55.000 0.00 0.00 0.00 3.41
448 475 1.304381 GGCCCTCACTTTGCATCCA 60.304 57.895 0.00 0.00 0.00 3.41
449 476 2.054453 GGGCCCTCACTTTGCATCC 61.054 63.158 17.04 0.00 0.00 3.51
450 477 2.054453 GGGGCCCTCACTTTGCATC 61.054 63.158 24.38 0.00 0.00 3.91
451 478 2.037847 GGGGCCCTCACTTTGCAT 59.962 61.111 24.38 0.00 0.00 3.96
452 479 4.659172 CGGGGCCCTCACTTTGCA 62.659 66.667 24.38 0.00 0.00 4.08
453 480 3.860930 TTCGGGGCCCTCACTTTGC 62.861 63.158 24.38 0.04 0.00 3.68
454 481 1.000896 ATTCGGGGCCCTCACTTTG 60.001 57.895 24.38 2.51 0.00 2.77
455 482 1.000896 CATTCGGGGCCCTCACTTT 60.001 57.895 24.38 0.00 0.00 2.66
456 483 1.915078 CTCATTCGGGGCCCTCACTT 61.915 60.000 24.38 0.00 0.00 3.16
457 484 2.285368 TCATTCGGGGCCCTCACT 60.285 61.111 24.38 1.06 0.00 3.41
458 485 1.335132 TACTCATTCGGGGCCCTCAC 61.335 60.000 24.38 3.61 0.00 3.51
459 486 0.619255 TTACTCATTCGGGGCCCTCA 60.619 55.000 24.38 7.06 0.00 3.86
460 487 0.544697 TTTACTCATTCGGGGCCCTC 59.455 55.000 24.38 11.27 0.00 4.30
461 488 0.546598 CTTTACTCATTCGGGGCCCT 59.453 55.000 24.38 0.00 0.00 5.19
462 489 0.465642 CCTTTACTCATTCGGGGCCC 60.466 60.000 15.76 15.76 0.00 5.80
463 490 0.255033 ACCTTTACTCATTCGGGGCC 59.745 55.000 0.00 0.00 0.00 5.80
464 491 1.065709 TCACCTTTACTCATTCGGGGC 60.066 52.381 0.00 0.00 0.00 5.80
465 492 3.206150 CATCACCTTTACTCATTCGGGG 58.794 50.000 0.00 0.00 0.00 5.73
466 493 3.871594 GACATCACCTTTACTCATTCGGG 59.128 47.826 0.00 0.00 0.00 5.14
467 494 4.330074 GTGACATCACCTTTACTCATTCGG 59.670 45.833 0.18 0.00 40.85 4.30
468 495 5.456192 GTGACATCACCTTTACTCATTCG 57.544 43.478 0.18 0.00 40.85 3.34
481 508 6.254589 CCGAATTCTTAGAGAAGTGACATCAC 59.745 42.308 3.72 3.72 46.77 3.06
501 528 3.870606 CGTTTGCTCGGACCGAAT 58.129 55.556 18.93 0.00 34.74 3.34
514 541 3.756434 CCACTCATCCACATTAACCGTTT 59.244 43.478 0.00 0.00 0.00 3.60
522 549 5.010012 GTGAAACTTTCCACTCATCCACATT 59.990 40.000 0.00 0.00 0.00 2.71
525 552 4.489679 GTGAAACTTTCCACTCATCCAC 57.510 45.455 0.00 0.00 0.00 4.02
559 586 2.938956 ACACCTCTTGACCTTTGGAG 57.061 50.000 0.00 0.00 0.00 3.86
578 605 4.083696 GCGATCTTAACGTTTCCCAAGAAA 60.084 41.667 5.91 0.00 39.70 2.52
579 606 3.434299 GCGATCTTAACGTTTCCCAAGAA 59.566 43.478 5.91 0.00 31.25 2.52
580 607 2.997986 GCGATCTTAACGTTTCCCAAGA 59.002 45.455 5.91 10.00 0.00 3.02
581 608 2.739913 TGCGATCTTAACGTTTCCCAAG 59.260 45.455 5.91 3.94 0.00 3.61
582 609 2.768698 TGCGATCTTAACGTTTCCCAA 58.231 42.857 5.91 0.00 0.00 4.12
583 610 2.459060 TGCGATCTTAACGTTTCCCA 57.541 45.000 5.91 0.00 0.00 4.37
584 611 3.425758 CCTTTGCGATCTTAACGTTTCCC 60.426 47.826 5.91 0.00 0.00 3.97
585 612 3.743886 CCTTTGCGATCTTAACGTTTCC 58.256 45.455 5.91 0.00 0.00 3.13
586 613 3.161306 GCCTTTGCGATCTTAACGTTTC 58.839 45.455 5.91 0.00 0.00 2.78
587 614 2.095415 GGCCTTTGCGATCTTAACGTTT 60.095 45.455 5.91 0.00 38.85 3.60
588 615 1.467342 GGCCTTTGCGATCTTAACGTT 59.533 47.619 5.88 5.88 38.85 3.99
589 616 1.084289 GGCCTTTGCGATCTTAACGT 58.916 50.000 0.00 0.00 38.85 3.99
590 617 1.083489 TGGCCTTTGCGATCTTAACG 58.917 50.000 3.32 0.00 38.85 3.18
591 618 3.782889 ATTGGCCTTTGCGATCTTAAC 57.217 42.857 3.32 0.00 38.85 2.01
592 619 3.882888 CCTATTGGCCTTTGCGATCTTAA 59.117 43.478 3.32 0.00 38.85 1.85
593 620 3.118038 ACCTATTGGCCTTTGCGATCTTA 60.118 43.478 3.32 0.00 38.85 2.10
594 621 2.301346 CCTATTGGCCTTTGCGATCTT 58.699 47.619 3.32 0.00 38.85 2.40
595 622 1.212935 ACCTATTGGCCTTTGCGATCT 59.787 47.619 3.32 0.00 38.85 2.75
596 623 1.334869 CACCTATTGGCCTTTGCGATC 59.665 52.381 3.32 0.00 38.85 3.69
597 624 1.340991 ACACCTATTGGCCTTTGCGAT 60.341 47.619 3.32 0.00 38.85 4.58
598 625 0.037590 ACACCTATTGGCCTTTGCGA 59.962 50.000 3.32 0.00 38.85 5.10
599 626 0.887933 AACACCTATTGGCCTTTGCG 59.112 50.000 3.32 0.00 38.85 4.85
600 627 2.687370 CAAACACCTATTGGCCTTTGC 58.313 47.619 3.32 0.00 36.63 3.68
601 628 2.299867 AGCAAACACCTATTGGCCTTTG 59.700 45.455 3.32 4.81 36.70 2.77
602 629 2.299867 CAGCAAACACCTATTGGCCTTT 59.700 45.455 3.32 0.00 36.63 3.11
603 630 1.895131 CAGCAAACACCTATTGGCCTT 59.105 47.619 3.32 0.00 36.63 4.35
604 631 1.549203 CAGCAAACACCTATTGGCCT 58.451 50.000 3.32 0.00 36.63 5.19
605 632 0.532115 CCAGCAAACACCTATTGGCC 59.468 55.000 0.00 0.00 36.63 5.36
606 633 0.532115 CCCAGCAAACACCTATTGGC 59.468 55.000 0.00 0.00 36.63 4.52
607 634 2.214376 TCCCAGCAAACACCTATTGG 57.786 50.000 0.00 0.00 39.83 3.16
608 635 3.611530 CGTTTCCCAGCAAACACCTATTG 60.612 47.826 0.00 0.00 36.23 1.90
609 636 2.556622 CGTTTCCCAGCAAACACCTATT 59.443 45.455 0.00 0.00 36.23 1.73
610 637 2.159382 CGTTTCCCAGCAAACACCTAT 58.841 47.619 0.00 0.00 36.23 2.57
611 638 1.134037 ACGTTTCCCAGCAAACACCTA 60.134 47.619 0.00 0.00 36.23 3.08
612 639 0.395173 ACGTTTCCCAGCAAACACCT 60.395 50.000 0.00 0.00 36.23 4.00
630 657 4.377839 TCTGAGAACATCCGATCTTGAC 57.622 45.455 0.00 0.00 0.00 3.18
632 659 6.276091 TGTTATCTGAGAACATCCGATCTTG 58.724 40.000 13.38 0.00 34.18 3.02
664 691 6.975197 GTCATGGCTTTATTTTAGCTTCCTTC 59.025 38.462 0.00 0.00 38.67 3.46
748 775 1.757118 GGGATGAGATGACACGAGGAA 59.243 52.381 0.00 0.00 0.00 3.36
865 892 3.882326 CCCTGAGCGCCATGGGAT 61.882 66.667 20.46 1.70 42.11 3.85
1171 1198 1.135431 CGCCGCCAAAATGATCTCAAA 60.135 47.619 0.00 0.00 0.00 2.69
1265 1292 9.646427 ATGAGTTAAGATGAAGAAACTCTGTAC 57.354 33.333 13.41 0.00 45.16 2.90
1333 1360 7.259882 TGATTGCAACAATATGGCTCTTTAAG 58.740 34.615 0.00 0.00 0.00 1.85
1351 1378 1.117994 TGGGCAGTGTTTTGATTGCA 58.882 45.000 0.00 0.00 38.27 4.08
1433 1461 7.228108 GCAAACATACTAAATACTAAGTCCCCC 59.772 40.741 0.00 0.00 0.00 5.40
1434 1462 7.991460 AGCAAACATACTAAATACTAAGTCCCC 59.009 37.037 0.00 0.00 0.00 4.81
1435 1463 8.959705 AGCAAACATACTAAATACTAAGTCCC 57.040 34.615 0.00 0.00 0.00 4.46
1442 1470 8.883731 CACAGCTAAGCAAACATACTAAATACT 58.116 33.333 0.00 0.00 0.00 2.12
1443 1471 8.665685 ACACAGCTAAGCAAACATACTAAATAC 58.334 33.333 0.00 0.00 0.00 1.89
1444 1472 8.786826 ACACAGCTAAGCAAACATACTAAATA 57.213 30.769 0.00 0.00 0.00 1.40
1445 1473 7.687941 ACACAGCTAAGCAAACATACTAAAT 57.312 32.000 0.00 0.00 0.00 1.40
1446 1474 7.227711 TCAACACAGCTAAGCAAACATACTAAA 59.772 33.333 0.00 0.00 0.00 1.85
1447 1475 6.708502 TCAACACAGCTAAGCAAACATACTAA 59.291 34.615 0.00 0.00 0.00 2.24
1450 1805 5.356882 TCAACACAGCTAAGCAAACATAC 57.643 39.130 0.00 0.00 0.00 2.39
1459 1819 7.658179 TCAAAGTTCTATCAACACAGCTAAG 57.342 36.000 0.00 0.00 0.00 2.18
1636 1996 5.945191 TCATACTTGCAAATGAGATGGTTCA 59.055 36.000 9.30 0.00 0.00 3.18
2030 2390 3.909430 TCACTCAGCTTAAACACTACCG 58.091 45.455 0.00 0.00 0.00 4.02
2048 2408 3.990092 TGTAACCTCACACTGACATCAC 58.010 45.455 0.00 0.00 0.00 3.06
2212 2572 2.614983 TCGCTAACCAAGGACAACAAAC 59.385 45.455 0.00 0.00 0.00 2.93
2231 2591 6.479990 TCTGAAGCATCACCTGTAATAAATCG 59.520 38.462 0.00 0.00 0.00 3.34
2354 2714 6.486320 TCAATCACTGCTCTTTGTTCATGTAA 59.514 34.615 0.00 0.00 0.00 2.41
2425 2785 4.323562 GGACCTTAGTTAGTCTGCCACATT 60.324 45.833 0.00 0.00 33.39 2.71
2426 2786 3.197983 GGACCTTAGTTAGTCTGCCACAT 59.802 47.826 0.00 0.00 33.39 3.21
2427 2787 2.565834 GGACCTTAGTTAGTCTGCCACA 59.434 50.000 0.00 0.00 33.39 4.17
2428 2788 2.416972 CGGACCTTAGTTAGTCTGCCAC 60.417 54.545 0.00 0.00 32.91 5.01
2504 2864 1.269723 GAGGCCAGTTACTTTGGTTGC 59.730 52.381 5.01 0.00 38.02 4.17
2629 2989 2.296752 TGACCACAACAATGCCATCAAG 59.703 45.455 0.00 0.00 0.00 3.02
2682 3093 3.344535 TCCAGAAGGCATACTATGGGA 57.655 47.619 0.00 0.00 37.00 4.37
2820 3231 3.179830 CGACAGCTGGTAAGTATGTCAC 58.820 50.000 19.93 0.00 39.93 3.67
3016 3427 3.636231 CCACAGCCCGAGGTTCCA 61.636 66.667 0.00 0.00 0.00 3.53
3299 3710 0.538057 CGCCATTGCCATACCTGGAT 60.538 55.000 0.00 0.00 46.37 3.41
3339 3750 2.744202 CAAAACGGTCTGATCCTCCAAG 59.256 50.000 0.00 0.00 0.00 3.61
3397 3808 5.233225 CACCATAACGATCATCAGCATAGT 58.767 41.667 0.00 0.00 0.00 2.12
3543 3954 3.579586 TCACGGTAATAACTTCCACCTGT 59.420 43.478 0.00 0.00 0.00 4.00
3659 4070 1.413077 GCAGGCCTATCTCGGTAACTT 59.587 52.381 3.98 0.00 0.00 2.66
3792 4203 7.606456 ACATAGTGGACACAAATAAAGTAGGTG 59.394 37.037 5.14 0.00 35.66 4.00
3797 4284 8.514594 CATCAACATAGTGGACACAAATAAAGT 58.485 33.333 5.14 0.00 0.00 2.66
3946 4463 8.243426 ACACAATACCATAACAATAAGCAACAG 58.757 33.333 0.00 0.00 0.00 3.16
4029 4546 0.665835 TTGACAATGCCGACAACACC 59.334 50.000 0.00 0.00 0.00 4.16
4193 4710 5.486526 ACAAACCTGAAACATTGCTTTGAA 58.513 33.333 0.00 0.00 0.00 2.69
4296 4813 3.930229 TCCGTCATTTACCAGTTGAATCG 59.070 43.478 0.00 0.00 0.00 3.34
4385 4921 2.542595 GGCGGGTGAAAAGATATACGTG 59.457 50.000 0.00 0.00 0.00 4.49
4409 4945 8.454106 CAAATGGACTTAATTCTAACTGGAGTG 58.546 37.037 0.00 0.00 0.00 3.51
4411 4947 8.454106 CACAAATGGACTTAATTCTAACTGGAG 58.546 37.037 0.00 0.00 0.00 3.86
4480 5017 2.375845 CTCTCTCCCCCTCTCCGTATAA 59.624 54.545 0.00 0.00 0.00 0.98
4485 5022 2.197324 CCTCTCTCCCCCTCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
4486 5023 2.612251 CCCTCTCTCCCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
4487 5024 2.612251 CCCCTCTCTCCCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
4488 5025 3.039526 CCCCCTCTCTCCCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
4512 5859 6.320518 CCATACCCTAAGACATACCCTAAGA 58.679 44.000 0.00 0.00 0.00 2.10
4516 5863 3.248888 GCCATACCCTAAGACATACCCT 58.751 50.000 0.00 0.00 0.00 4.34
4522 5869 1.208535 CGTTGGCCATACCCTAAGACA 59.791 52.381 6.09 0.00 37.83 3.41
4523 5870 1.949465 CGTTGGCCATACCCTAAGAC 58.051 55.000 6.09 0.00 37.83 3.01
4524 5871 0.179468 GCGTTGGCCATACCCTAAGA 59.821 55.000 6.09 0.00 37.83 2.10
4525 5872 0.107410 TGCGTTGGCCATACCCTAAG 60.107 55.000 6.09 0.00 38.85 2.18
4526 5873 0.548989 ATGCGTTGGCCATACCCTAA 59.451 50.000 6.09 0.00 38.85 2.69
4527 5874 1.346395 CTATGCGTTGGCCATACCCTA 59.654 52.381 6.09 0.00 38.85 3.53
4528 5875 0.108585 CTATGCGTTGGCCATACCCT 59.891 55.000 6.09 0.00 38.85 4.34
4529 5876 1.515521 GCTATGCGTTGGCCATACCC 61.516 60.000 6.09 0.77 38.85 3.69
4530 5877 1.515521 GGCTATGCGTTGGCCATACC 61.516 60.000 6.09 0.00 44.69 2.73
4531 5878 1.515521 GGGCTATGCGTTGGCCATAC 61.516 60.000 24.53 7.16 46.87 2.39
4532 5879 1.228124 GGGCTATGCGTTGGCCATA 60.228 57.895 24.53 0.00 46.87 2.74
4533 5880 2.519302 GGGCTATGCGTTGGCCAT 60.519 61.111 24.53 0.00 46.87 4.40
4536 5883 1.598130 CCTAGGGCTATGCGTTGGC 60.598 63.158 0.00 5.35 40.52 4.52
4537 5884 0.532862 CACCTAGGGCTATGCGTTGG 60.533 60.000 14.81 0.00 0.00 3.77
4538 5885 0.464036 TCACCTAGGGCTATGCGTTG 59.536 55.000 14.81 0.00 0.00 4.10
4539 5886 1.070758 CATCACCTAGGGCTATGCGTT 59.929 52.381 14.81 0.00 0.00 4.84
4540 5887 0.681733 CATCACCTAGGGCTATGCGT 59.318 55.000 14.81 0.00 0.00 5.24
4541 5888 0.671781 GCATCACCTAGGGCTATGCG 60.672 60.000 21.96 5.97 35.49 4.73
4542 5889 0.689623 AGCATCACCTAGGGCTATGC 59.310 55.000 25.99 25.99 41.50 3.14
4543 5890 4.833478 ATAAGCATCACCTAGGGCTATG 57.167 45.455 14.81 13.85 35.11 2.23
4544 5891 4.402793 CGTATAAGCATCACCTAGGGCTAT 59.597 45.833 14.81 8.73 35.11 2.97
4545 5892 3.762288 CGTATAAGCATCACCTAGGGCTA 59.238 47.826 14.81 0.00 35.11 3.93
4546 5893 2.563179 CGTATAAGCATCACCTAGGGCT 59.437 50.000 14.81 9.18 38.45 5.19
4547 5894 2.353803 CCGTATAAGCATCACCTAGGGC 60.354 54.545 14.81 6.68 0.00 5.19
4548 5895 3.162666 TCCGTATAAGCATCACCTAGGG 58.837 50.000 14.81 2.03 0.00 3.53
4549 5896 4.079970 TCTCCGTATAAGCATCACCTAGG 58.920 47.826 7.41 7.41 0.00 3.02
4550 5897 4.156922 CCTCTCCGTATAAGCATCACCTAG 59.843 50.000 0.00 0.00 0.00 3.02
4551 5898 4.079970 CCTCTCCGTATAAGCATCACCTA 58.920 47.826 0.00 0.00 0.00 3.08
4552 5899 2.894126 CCTCTCCGTATAAGCATCACCT 59.106 50.000 0.00 0.00 0.00 4.00
4553 5900 2.028930 CCCTCTCCGTATAAGCATCACC 60.029 54.545 0.00 0.00 0.00 4.02
4554 5901 2.891580 TCCCTCTCCGTATAAGCATCAC 59.108 50.000 0.00 0.00 0.00 3.06
4555 5902 3.157881 CTCCCTCTCCGTATAAGCATCA 58.842 50.000 0.00 0.00 0.00 3.07
4556 5903 3.422796 TCTCCCTCTCCGTATAAGCATC 58.577 50.000 0.00 0.00 0.00 3.91
4557 5904 3.074687 TCTCTCCCTCTCCGTATAAGCAT 59.925 47.826 0.00 0.00 0.00 3.79
4558 5905 2.442126 TCTCTCCCTCTCCGTATAAGCA 59.558 50.000 0.00 0.00 0.00 3.91
4559 5906 3.078837 CTCTCTCCCTCTCCGTATAAGC 58.921 54.545 0.00 0.00 0.00 3.09
4560 5907 4.564821 CCTCTCTCTCCCTCTCCGTATAAG 60.565 54.167 0.00 0.00 0.00 1.73
4561 5908 3.328343 CCTCTCTCTCCCTCTCCGTATAA 59.672 52.174 0.00 0.00 0.00 0.98
4562 5909 2.907696 CCTCTCTCTCCCTCTCCGTATA 59.092 54.545 0.00 0.00 0.00 1.47
4563 5910 1.702957 CCTCTCTCTCCCTCTCCGTAT 59.297 57.143 0.00 0.00 0.00 3.06
4564 5911 1.133363 CCTCTCTCTCCCTCTCCGTA 58.867 60.000 0.00 0.00 0.00 4.02
4565 5912 1.641552 CCCTCTCTCTCCCTCTCCGT 61.642 65.000 0.00 0.00 0.00 4.69
4566 5913 1.150536 CCCTCTCTCTCCCTCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
4567 5914 1.541672 CCCCTCTCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
4568 5915 1.541672 CCCCCTCTCTCTCCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
4569 5916 3.782918 CCCCCTCTCTCTCCCTCT 58.217 66.667 0.00 0.00 0.00 3.69
4594 5941 0.751277 TGCATTGGCCATACCGGAAG 60.751 55.000 9.46 0.00 43.94 3.46
4595 5942 0.106268 ATGCATTGGCCATACCGGAA 60.106 50.000 9.46 0.00 43.94 4.30
4596 5943 0.767998 TATGCATTGGCCATACCGGA 59.232 50.000 9.46 0.00 43.94 5.14
4597 5944 1.167851 CTATGCATTGGCCATACCGG 58.832 55.000 6.09 0.00 43.94 5.28
4598 5945 0.523072 GCTATGCATTGGCCATACCG 59.477 55.000 6.09 0.00 43.94 4.02
4599 5946 0.890683 GGCTATGCATTGGCCATACC 59.109 55.000 27.57 10.35 44.69 2.73
4600 5947 0.890683 GGGCTATGCATTGGCCATAC 59.109 55.000 36.79 19.84 46.87 2.39
4624 5971 1.102154 CATAACTTGCGGGGCATCAA 58.898 50.000 0.00 0.00 38.76 2.57
4631 5978 2.800544 CCGATTCTACATAACTTGCGGG 59.199 50.000 0.00 0.00 33.13 6.13
4637 5984 8.651589 TTCCTGATATCCGATTCTACATAACT 57.348 34.615 0.00 0.00 0.00 2.24
4638 5985 9.706691 TTTTCCTGATATCCGATTCTACATAAC 57.293 33.333 0.00 0.00 0.00 1.89
4639 5986 9.929180 CTTTTCCTGATATCCGATTCTACATAA 57.071 33.333 0.00 0.00 0.00 1.90
4640 5987 9.090103 ACTTTTCCTGATATCCGATTCTACATA 57.910 33.333 0.00 0.00 0.00 2.29
4641 5988 7.967908 ACTTTTCCTGATATCCGATTCTACAT 58.032 34.615 0.00 0.00 0.00 2.29
4642 5989 7.361457 ACTTTTCCTGATATCCGATTCTACA 57.639 36.000 0.00 0.00 0.00 2.74
4643 5990 8.030106 CCTACTTTTCCTGATATCCGATTCTAC 58.970 40.741 0.00 0.00 0.00 2.59
4644 5991 7.948447 TCCTACTTTTCCTGATATCCGATTCTA 59.052 37.037 0.00 0.00 0.00 2.10
4645 5992 6.782988 TCCTACTTTTCCTGATATCCGATTCT 59.217 38.462 0.00 0.00 0.00 2.40
4646 5993 6.994221 TCCTACTTTTCCTGATATCCGATTC 58.006 40.000 0.00 0.00 0.00 2.52
4647 5994 6.014156 CCTCCTACTTTTCCTGATATCCGATT 60.014 42.308 0.00 0.00 0.00 3.34
4648 5995 5.482175 CCTCCTACTTTTCCTGATATCCGAT 59.518 44.000 0.00 0.00 0.00 4.18
4649 5996 4.833380 CCTCCTACTTTTCCTGATATCCGA 59.167 45.833 0.00 0.00 0.00 4.55
4650 5997 4.589374 ACCTCCTACTTTTCCTGATATCCG 59.411 45.833 0.00 0.00 0.00 4.18
4651 5998 6.502074 AACCTCCTACTTTTCCTGATATCC 57.498 41.667 0.00 0.00 0.00 2.59
4652 5999 8.652290 ACATAACCTCCTACTTTTCCTGATATC 58.348 37.037 0.00 0.00 0.00 1.63
4653 6000 8.568617 ACATAACCTCCTACTTTTCCTGATAT 57.431 34.615 0.00 0.00 0.00 1.63
4654 6001 7.989947 ACATAACCTCCTACTTTTCCTGATA 57.010 36.000 0.00 0.00 0.00 2.15
4655 6002 6.893020 ACATAACCTCCTACTTTTCCTGAT 57.107 37.500 0.00 0.00 0.00 2.90
4656 6003 6.383147 CCTACATAACCTCCTACTTTTCCTGA 59.617 42.308 0.00 0.00 0.00 3.86
4657 6004 6.383147 TCCTACATAACCTCCTACTTTTCCTG 59.617 42.308 0.00 0.00 0.00 3.86
4658 6005 6.509386 TCCTACATAACCTCCTACTTTTCCT 58.491 40.000 0.00 0.00 0.00 3.36
4659 6006 6.803366 TCCTACATAACCTCCTACTTTTCC 57.197 41.667 0.00 0.00 0.00 3.13
4660 6007 7.146648 CGATCCTACATAACCTCCTACTTTTC 58.853 42.308 0.00 0.00 0.00 2.29
4661 6008 6.041751 CCGATCCTACATAACCTCCTACTTTT 59.958 42.308 0.00 0.00 0.00 2.27
4662 6009 5.539193 CCGATCCTACATAACCTCCTACTTT 59.461 44.000 0.00 0.00 0.00 2.66
4663 6010 5.078256 CCGATCCTACATAACCTCCTACTT 58.922 45.833 0.00 0.00 0.00 2.24
4664 6011 4.353191 TCCGATCCTACATAACCTCCTACT 59.647 45.833 0.00 0.00 0.00 2.57
4665 6012 4.660168 TCCGATCCTACATAACCTCCTAC 58.340 47.826 0.00 0.00 0.00 3.18
4666 6013 5.531753 ATCCGATCCTACATAACCTCCTA 57.468 43.478 0.00 0.00 0.00 2.94
4667 6014 3.897657 TCCGATCCTACATAACCTCCT 57.102 47.619 0.00 0.00 0.00 3.69
4668 6015 5.892119 TGATATCCGATCCTACATAACCTCC 59.108 44.000 0.00 0.00 0.00 4.30
4669 6016 6.039941 CCTGATATCCGATCCTACATAACCTC 59.960 46.154 0.00 0.00 0.00 3.85
4670 6017 5.894393 CCTGATATCCGATCCTACATAACCT 59.106 44.000 0.00 0.00 0.00 3.50
4671 6018 5.892119 TCCTGATATCCGATCCTACATAACC 59.108 44.000 0.00 0.00 0.00 2.85
4672 6019 7.406031 TTCCTGATATCCGATCCTACATAAC 57.594 40.000 0.00 0.00 0.00 1.89
4673 6020 8.430573 TTTTCCTGATATCCGATCCTACATAA 57.569 34.615 0.00 0.00 0.00 1.90
4674 6021 7.674348 ACTTTTCCTGATATCCGATCCTACATA 59.326 37.037 0.00 0.00 0.00 2.29
4675 6022 6.498651 ACTTTTCCTGATATCCGATCCTACAT 59.501 38.462 0.00 0.00 0.00 2.29
4676 6023 5.839063 ACTTTTCCTGATATCCGATCCTACA 59.161 40.000 0.00 0.00 0.00 2.74
4677 6024 6.347859 ACTTTTCCTGATATCCGATCCTAC 57.652 41.667 0.00 0.00 0.00 3.18
4678 6025 6.663953 CCTACTTTTCCTGATATCCGATCCTA 59.336 42.308 0.00 0.00 0.00 2.94
4679 6026 5.482175 CCTACTTTTCCTGATATCCGATCCT 59.518 44.000 0.00 0.00 0.00 3.24
4680 6027 5.246429 ACCTACTTTTCCTGATATCCGATCC 59.754 44.000 0.00 0.00 0.00 3.36
4681 6028 6.347859 ACCTACTTTTCCTGATATCCGATC 57.652 41.667 0.00 0.00 0.00 3.69
4682 6029 6.516860 CGAACCTACTTTTCCTGATATCCGAT 60.517 42.308 0.00 0.00 0.00 4.18
4683 6030 5.221185 CGAACCTACTTTTCCTGATATCCGA 60.221 44.000 0.00 0.00 0.00 4.55
4684 6031 4.982916 CGAACCTACTTTTCCTGATATCCG 59.017 45.833 0.00 0.00 0.00 4.18
4685 6032 5.070047 TCCGAACCTACTTTTCCTGATATCC 59.930 44.000 0.00 0.00 0.00 2.59
4686 6033 6.158023 TCCGAACCTACTTTTCCTGATATC 57.842 41.667 0.00 0.00 0.00 1.63
4687 6034 6.464465 CCATCCGAACCTACTTTTCCTGATAT 60.464 42.308 0.00 0.00 0.00 1.63
4688 6035 5.163343 CCATCCGAACCTACTTTTCCTGATA 60.163 44.000 0.00 0.00 0.00 2.15
4689 6036 4.384208 CCATCCGAACCTACTTTTCCTGAT 60.384 45.833 0.00 0.00 0.00 2.90
4690 6037 3.055385 CCATCCGAACCTACTTTTCCTGA 60.055 47.826 0.00 0.00 0.00 3.86
4691 6038 3.270877 CCATCCGAACCTACTTTTCCTG 58.729 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.