Multiple sequence alignment - TraesCS2D01G238700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G238700 chr2D 100.000 8332 0 0 1 8332 249187971 249196302 0.000000e+00 15387.0
1 TraesCS2D01G238700 chr2D 79.104 1584 253 48 2232 3776 274865744 274864200 0.000000e+00 1020.0
2 TraesCS2D01G238700 chr2D 85.434 968 125 14 1913 2876 225313270 225314225 0.000000e+00 992.0
3 TraesCS2D01G238700 chr2D 90.570 456 38 4 7881 8332 325342916 325342462 4.300000e-167 599.0
4 TraesCS2D01G238700 chr2D 96.000 75 3 0 4395 4469 648365445 648365371 1.140000e-23 122.0
5 TraesCS2D01G238700 chr2D 80.864 162 24 5 6215 6370 395561633 395561793 4.080000e-23 121.0
6 TraesCS2D01G238700 chr2A 89.252 3759 340 32 1917 5647 289770984 289767262 0.000000e+00 4645.0
7 TraesCS2D01G238700 chr2A 84.998 2873 320 60 824 3648 289776515 289773706 0.000000e+00 2815.0
8 TraesCS2D01G238700 chr2A 93.221 1608 83 12 6613 8208 289760319 289758726 0.000000e+00 2342.0
9 TraesCS2D01G238700 chr2A 89.911 783 60 11 1 768 289777585 289776807 0.000000e+00 990.0
10 TraesCS2D01G238700 chr2A 87.158 584 43 18 5911 6470 289761765 289761190 1.180000e-177 634.0
11 TraesCS2D01G238700 chr2A 92.179 179 14 0 5643 5821 289762102 289761924 3.860000e-63 254.0
12 TraesCS2D01G238700 chr2A 84.615 273 18 6 4216 4467 102694872 102694603 4.990000e-62 250.0
13 TraesCS2D01G238700 chr2A 92.308 130 9 1 6574 6702 738098802 738098931 5.140000e-42 183.0
14 TraesCS2D01G238700 chr2A 95.413 109 4 1 6466 6574 289761165 289761058 1.110000e-38 172.0
15 TraesCS2D01G238700 chr2A 97.260 73 2 0 4395 4467 102694863 102694791 3.160000e-24 124.0
16 TraesCS2D01G238700 chr2A 78.571 168 24 5 6215 6371 9889513 9889679 5.320000e-17 100.0
17 TraesCS2D01G238700 chr2A 94.872 39 1 1 754 792 289776558 289776521 9.030000e-05 60.2
18 TraesCS2D01G238700 chr2B 86.808 4154 385 76 763 4813 298167937 298163844 0.000000e+00 4484.0
19 TraesCS2D01G238700 chr2B 90.041 1456 90 26 6466 7881 298152258 298150818 0.000000e+00 1834.0
20 TraesCS2D01G238700 chr2B 83.690 1214 154 28 1906 3110 461572550 461573728 0.000000e+00 1105.0
21 TraesCS2D01G238700 chr2B 89.060 649 63 5 5251 5898 298153541 298152900 0.000000e+00 798.0
22 TraesCS2D01G238700 chr2B 91.266 458 35 5 4808 5262 298161228 298160773 3.300000e-173 619.0
23 TraesCS2D01G238700 chr2B 90.789 456 38 3 7881 8332 537327783 537328238 2.570000e-169 606.0
24 TraesCS2D01G238700 chr2B 78.179 692 116 21 2917 3578 793045302 793044616 7.780000e-110 409.0
25 TraesCS2D01G238700 chr2B 84.478 335 26 10 5923 6232 298152779 298152446 2.920000e-79 307.0
26 TraesCS2D01G238700 chr2B 77.170 530 94 18 3213 3717 785624718 785624191 4.920000e-72 283.0
27 TraesCS2D01G238700 chr2B 84.615 273 19 7 4215 4466 383639989 383640259 4.990000e-62 250.0
28 TraesCS2D01G238700 chr2B 91.333 150 9 3 6322 6470 298152429 298152283 1.420000e-47 202.0
29 TraesCS2D01G238700 chr2B 97.222 72 2 0 4395 4466 383639999 383640070 1.140000e-23 122.0
30 TraesCS2D01G238700 chr4A 80.230 1912 293 60 1913 3797 740167330 740165477 0.000000e+00 1358.0
31 TraesCS2D01G238700 chr4A 87.792 557 56 7 61 612 645500634 645501183 7.050000e-180 641.0
32 TraesCS2D01G238700 chr4A 90.789 456 37 4 7881 8332 580771564 580772018 9.250000e-169 604.0
33 TraesCS2D01G238700 chr5B 83.988 1299 175 21 1913 3206 524539811 524538541 0.000000e+00 1216.0
34 TraesCS2D01G238700 chr5B 77.057 1556 284 41 2187 3718 541685083 541686589 0.000000e+00 828.0
35 TraesCS2D01G238700 chr5B 80.410 536 72 22 3877 4390 80684665 80684141 2.200000e-100 377.0
36 TraesCS2D01G238700 chr5B 74.449 771 137 35 3057 3782 111195726 111194971 2.290000e-70 278.0
37 TraesCS2D01G238700 chr5B 81.765 170 25 5 6953 7118 482498309 482498476 4.060000e-28 137.0
38 TraesCS2D01G238700 chr5B 79.500 200 32 8 6943 7139 180910893 180910700 5.250000e-27 134.0
39 TraesCS2D01G238700 chr4D 82.679 1426 191 44 1913 3321 279552551 279553937 0.000000e+00 1214.0
40 TraesCS2D01G238700 chr4D 80.885 1423 207 37 2174 3561 419319521 419320913 0.000000e+00 1061.0
41 TraesCS2D01G238700 chr4D 90.591 457 37 5 7880 8332 230923396 230923850 1.200000e-167 601.0
42 TraesCS2D01G238700 chr4D 86.310 168 15 4 6213 6373 117421188 117421354 8.600000e-40 176.0
43 TraesCS2D01G238700 chr4D 96.000 75 3 0 4392 4466 175092309 175092383 1.140000e-23 122.0
44 TraesCS2D01G238700 chr1B 82.208 1422 201 38 1913 3321 684678669 684677287 0.000000e+00 1177.0
45 TraesCS2D01G238700 chr1B 88.073 545 54 7 79 616 597400364 597399824 3.280000e-178 636.0
46 TraesCS2D01G238700 chr1B 86.213 544 66 6 79 616 314560883 314560343 1.560000e-161 580.0
47 TraesCS2D01G238700 chr1B 85.281 231 31 2 6885 7115 470828255 470828028 1.400000e-57 235.0
48 TraesCS2D01G238700 chr1B 80.000 235 25 9 6468 6680 470834985 470834751 4.030000e-33 154.0
49 TraesCS2D01G238700 chr1B 72.706 425 90 20 4679 5093 670608738 670608330 1.470000e-22 119.0
50 TraesCS2D01G238700 chr3D 84.057 1267 152 34 1922 3176 246307986 246309214 0.000000e+00 1175.0
51 TraesCS2D01G238700 chr3D 78.455 919 142 34 2917 3805 123563954 123564846 4.400000e-152 549.0
52 TraesCS2D01G238700 chr3D 75.683 769 144 36 3050 3805 388780773 388781511 2.230000e-90 344.0
53 TraesCS2D01G238700 chr3D 81.698 377 51 12 3834 4197 365522970 365522599 1.760000e-76 298.0
54 TraesCS2D01G238700 chr3D 79.167 456 68 18 3949 4390 566964529 566964087 2.940000e-74 291.0
55 TraesCS2D01G238700 chr3D 83.516 273 22 6 4216 4467 150829013 150829283 5.030000e-57 233.0
56 TraesCS2D01G238700 chr7B 83.968 1235 160 27 1917 3143 739479330 739480534 0.000000e+00 1149.0
57 TraesCS2D01G238700 chr7B 79.167 360 69 5 3349 3704 525007445 525007088 2.320000e-60 244.0
58 TraesCS2D01G238700 chr7B 85.859 198 17 5 4201 4390 460554569 460554375 5.100000e-47 200.0
59 TraesCS2D01G238700 chr7B 91.667 108 9 0 6216 6323 696077507 696077614 5.210000e-32 150.0
60 TraesCS2D01G238700 chr7D 80.885 1423 200 43 2174 3563 179212929 179214312 0.000000e+00 1055.0
61 TraesCS2D01G238700 chr7D 90.177 621 46 4 1 616 167834970 167835580 0.000000e+00 795.0
62 TraesCS2D01G238700 chr7D 81.010 416 62 14 3813 4218 590370228 590369820 1.750000e-81 315.0
63 TraesCS2D01G238700 chr7D 79.379 451 61 20 3843 4268 547415544 547415101 1.060000e-73 289.0
64 TraesCS2D01G238700 chr7D 97.222 72 2 0 4395 4466 296642693 296642764 1.140000e-23 122.0
65 TraesCS2D01G238700 chr5A 86.733 603 61 13 51 637 382562622 382563221 0.000000e+00 652.0
66 TraesCS2D01G238700 chr5A 90.826 109 10 0 6215 6323 605798025 605797917 6.740000e-31 147.0
67 TraesCS2D01G238700 chr5A 79.487 195 31 8 6950 7141 702600145 702599957 6.790000e-26 130.0
68 TraesCS2D01G238700 chr5A 85.057 87 11 2 3720 3805 169998780 169998865 4.140000e-13 87.9
69 TraesCS2D01G238700 chr6B 85.603 639 61 13 1 616 585911271 585910641 7.050000e-180 641.0
70 TraesCS2D01G238700 chr6B 86.444 568 67 7 51 612 189216221 189216784 1.540000e-171 614.0
71 TraesCS2D01G238700 chr6B 86.177 463 51 10 6570 7022 132141884 132142343 9.720000e-134 488.0
72 TraesCS2D01G238700 chr6B 79.550 533 82 19 3877 4390 253446943 253447467 1.030000e-93 355.0
73 TraesCS2D01G238700 chr6B 84.663 163 18 3 6216 6371 256326140 256326302 1.120000e-33 156.0
74 TraesCS2D01G238700 chr6B 82.123 179 24 7 6969 7142 655756719 655756544 6.740000e-31 147.0
75 TraesCS2D01G238700 chr6B 81.818 165 19 7 6215 6371 77794238 77794399 2.440000e-25 128.0
76 TraesCS2D01G238700 chr1A 91.009 456 35 5 7882 8332 53186592 53186138 1.990000e-170 610.0
77 TraesCS2D01G238700 chr1A 78.313 166 25 7 6216 6371 559237846 559238010 6.880000e-16 97.1
78 TraesCS2D01G238700 chr3B 90.591 457 37 5 7881 8332 489725038 489725493 1.200000e-167 601.0
79 TraesCS2D01G238700 chr3B 83.735 166 19 6 6213 6371 391575962 391576126 5.210000e-32 150.0
80 TraesCS2D01G238700 chr6D 90.570 456 38 4 7881 8332 192617890 192617436 4.300000e-167 599.0
81 TraesCS2D01G238700 chr6D 80.932 472 68 19 3341 3805 56428349 56428805 3.700000e-93 353.0
82 TraesCS2D01G238700 chr6D 83.636 275 20 8 4213 4466 273966075 273966345 1.400000e-57 235.0
83 TraesCS2D01G238700 chr1D 90.570 456 38 4 7881 8332 175867889 175868343 4.300000e-167 599.0
84 TraesCS2D01G238700 chr1D 78.628 379 76 5 3341 3716 392955321 392955697 6.460000e-61 246.0
85 TraesCS2D01G238700 chr1D 86.772 189 17 2 4207 4390 482768292 482768477 3.940000e-48 204.0
86 TraesCS2D01G238700 chr1D 81.988 161 24 3 6218 6377 491765865 491765709 1.890000e-26 132.0
87 TraesCS2D01G238700 chr1D 96.053 76 3 0 4395 4470 481633863 481633788 3.160000e-24 124.0
88 TraesCS2D01G238700 chr6A 85.387 568 73 6 51 612 539370755 539371318 1.560000e-161 580.0
89 TraesCS2D01G238700 chr6A 81.099 455 58 20 3845 4277 1332862 1332414 1.040000e-88 339.0
90 TraesCS2D01G238700 chr6A 92.593 108 8 0 6216 6323 176993229 176993122 1.120000e-33 156.0
91 TraesCS2D01G238700 chr6A 73.362 458 96 15 3357 3805 1333484 1333044 6.740000e-31 147.0
92 TraesCS2D01G238700 chr6A 79.141 163 23 6 6217 6371 409562838 409562679 1.480000e-17 102.0
93 TraesCS2D01G238700 chr5D 78.742 922 148 32 2915 3805 445874646 445875550 2.610000e-159 573.0
94 TraesCS2D01G238700 chr5D 80.556 180 28 5 6970 7144 498473519 498473342 1.890000e-26 132.0
95 TraesCS2D01G238700 chr4B 76.180 911 175 33 2916 3805 408946772 408947661 7.680000e-120 442.0
96 TraesCS2D01G238700 chrUn 75.778 450 80 22 3954 4387 10697865 10698301 5.100000e-47 200.0
97 TraesCS2D01G238700 chr3A 81.319 182 23 9 6968 7141 146598909 146599087 4.060000e-28 137.0
98 TraesCS2D01G238700 chr3A 95.238 42 2 0 6327 6368 584012301 584012342 5.400000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G238700 chr2D 249187971 249196302 8331 False 15387.00 15387 100.00000 1 8332 1 chr2D.!!$F2 8331
1 TraesCS2D01G238700 chr2D 274864200 274865744 1544 True 1020.00 1020 79.10400 2232 3776 1 chr2D.!!$R1 1544
2 TraesCS2D01G238700 chr2D 225313270 225314225 955 False 992.00 992 85.43400 1913 2876 1 chr2D.!!$F1 963
3 TraesCS2D01G238700 chr2A 289767262 289777585 10323 True 2127.55 4645 89.75825 1 5647 4 chr2A.!!$R3 5646
4 TraesCS2D01G238700 chr2A 289758726 289762102 3376 True 850.50 2342 91.99275 5643 8208 4 chr2A.!!$R2 2565
5 TraesCS2D01G238700 chr2B 298160773 298167937 7164 True 2551.50 4484 89.03700 763 5262 2 chr2B.!!$R4 4499
6 TraesCS2D01G238700 chr2B 461572550 461573728 1178 False 1105.00 1105 83.69000 1906 3110 1 chr2B.!!$F1 1204
7 TraesCS2D01G238700 chr2B 298150818 298153541 2723 True 785.25 1834 88.72800 5251 7881 4 chr2B.!!$R3 2630
8 TraesCS2D01G238700 chr2B 793044616 793045302 686 True 409.00 409 78.17900 2917 3578 1 chr2B.!!$R2 661
9 TraesCS2D01G238700 chr2B 785624191 785624718 527 True 283.00 283 77.17000 3213 3717 1 chr2B.!!$R1 504
10 TraesCS2D01G238700 chr4A 740165477 740167330 1853 True 1358.00 1358 80.23000 1913 3797 1 chr4A.!!$R1 1884
11 TraesCS2D01G238700 chr4A 645500634 645501183 549 False 641.00 641 87.79200 61 612 1 chr4A.!!$F2 551
12 TraesCS2D01G238700 chr5B 524538541 524539811 1270 True 1216.00 1216 83.98800 1913 3206 1 chr5B.!!$R4 1293
13 TraesCS2D01G238700 chr5B 541685083 541686589 1506 False 828.00 828 77.05700 2187 3718 1 chr5B.!!$F2 1531
14 TraesCS2D01G238700 chr5B 80684141 80684665 524 True 377.00 377 80.41000 3877 4390 1 chr5B.!!$R1 513
15 TraesCS2D01G238700 chr5B 111194971 111195726 755 True 278.00 278 74.44900 3057 3782 1 chr5B.!!$R2 725
16 TraesCS2D01G238700 chr4D 279552551 279553937 1386 False 1214.00 1214 82.67900 1913 3321 1 chr4D.!!$F4 1408
17 TraesCS2D01G238700 chr4D 419319521 419320913 1392 False 1061.00 1061 80.88500 2174 3561 1 chr4D.!!$F5 1387
18 TraesCS2D01G238700 chr1B 684677287 684678669 1382 True 1177.00 1177 82.20800 1913 3321 1 chr1B.!!$R6 1408
19 TraesCS2D01G238700 chr1B 597399824 597400364 540 True 636.00 636 88.07300 79 616 1 chr1B.!!$R4 537
20 TraesCS2D01G238700 chr1B 314560343 314560883 540 True 580.00 580 86.21300 79 616 1 chr1B.!!$R1 537
21 TraesCS2D01G238700 chr3D 246307986 246309214 1228 False 1175.00 1175 84.05700 1922 3176 1 chr3D.!!$F3 1254
22 TraesCS2D01G238700 chr3D 123563954 123564846 892 False 549.00 549 78.45500 2917 3805 1 chr3D.!!$F1 888
23 TraesCS2D01G238700 chr3D 388780773 388781511 738 False 344.00 344 75.68300 3050 3805 1 chr3D.!!$F4 755
24 TraesCS2D01G238700 chr7B 739479330 739480534 1204 False 1149.00 1149 83.96800 1917 3143 1 chr7B.!!$F2 1226
25 TraesCS2D01G238700 chr7D 179212929 179214312 1383 False 1055.00 1055 80.88500 2174 3563 1 chr7D.!!$F2 1389
26 TraesCS2D01G238700 chr7D 167834970 167835580 610 False 795.00 795 90.17700 1 616 1 chr7D.!!$F1 615
27 TraesCS2D01G238700 chr5A 382562622 382563221 599 False 652.00 652 86.73300 51 637 1 chr5A.!!$F2 586
28 TraesCS2D01G238700 chr6B 585910641 585911271 630 True 641.00 641 85.60300 1 616 1 chr6B.!!$R1 615
29 TraesCS2D01G238700 chr6B 189216221 189216784 563 False 614.00 614 86.44400 51 612 1 chr6B.!!$F3 561
30 TraesCS2D01G238700 chr6B 253446943 253447467 524 False 355.00 355 79.55000 3877 4390 1 chr6B.!!$F4 513
31 TraesCS2D01G238700 chr6A 539370755 539371318 563 False 580.00 580 85.38700 51 612 1 chr6A.!!$F1 561
32 TraesCS2D01G238700 chr6A 1332414 1333484 1070 True 243.00 339 77.23050 3357 4277 2 chr6A.!!$R3 920
33 TraesCS2D01G238700 chr5D 445874646 445875550 904 False 573.00 573 78.74200 2915 3805 1 chr5D.!!$F1 890
34 TraesCS2D01G238700 chr4B 408946772 408947661 889 False 442.00 442 76.18000 2916 3805 1 chr4B.!!$F1 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 777 0.108186 TGCTGGTCTGATAAGCACGG 60.108 55.000 11.73 0.00 41.83 4.94 F
731 778 0.811616 GCTGGTCTGATAAGCACGGG 60.812 60.000 9.00 0.00 36.91 5.28 F
2163 2496 0.316204 CTCCCACAGTCGTAACGGTT 59.684 55.000 0.00 0.00 30.93 4.44 F
2634 7425 0.459585 GGCATGCGTAGACGAGGAAA 60.460 55.000 12.44 0.00 43.02 3.13 F
3520 8525 0.253044 GCATGAGGTGAGGTAAGCCA 59.747 55.000 0.00 0.00 37.19 4.75 F
4115 9295 0.974525 GAACCCTAGGTACGGGCTGT 60.975 60.000 8.29 3.57 46.04 4.40 F
4768 10006 0.109342 AGAAGGCCAACACTCCACAG 59.891 55.000 5.01 0.00 0.00 3.66 F
5913 13890 0.302890 GCGATTTGCTGTCCTGATCG 59.697 55.000 0.00 0.00 41.67 3.69 F
6132 14134 0.764890 TGGTGAGTTGGAAGGTGAGG 59.235 55.000 0.00 0.00 0.00 3.86 F
6137 14139 1.070786 GTTGGAAGGTGAGGACGCA 59.929 57.895 0.00 0.00 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2431 0.603569 TTCTTCTCCAGTCTCACCGC 59.396 55.000 0.00 0.00 0.00 5.68 R
2518 7309 1.189446 CAACTTCGTCTTTGTCCGTCG 59.811 52.381 0.00 0.00 0.00 5.12 R
3448 8451 1.006086 CGCCTCATTTATGTCGTGCA 58.994 50.000 0.00 0.00 0.00 4.57 R
4393 9593 0.106868 TGCATTGGCTAGAGCATGCT 60.107 50.000 22.92 22.92 45.25 3.79 R
4627 9863 0.108851 TCTGACGCTCGCTTTATGCA 60.109 50.000 0.00 0.00 43.06 3.96 R
6045 14022 0.181114 ATCACCACCATGGATGACCG 59.819 55.000 21.47 1.38 40.96 4.79 R
6441 14451 0.404040 AAAACGATGCCCCCAAGAGA 59.596 50.000 0.00 0.00 0.00 3.10 R
6771 15513 0.390492 TGGCTCCAGTCGCATCATAG 59.610 55.000 0.00 0.00 0.00 2.23 R
7048 15795 0.537188 CACCCGACCTCTGCATAACT 59.463 55.000 0.00 0.00 0.00 2.24 R
7538 16314 1.610522 GCCTGTCTGCAAATGAACTGT 59.389 47.619 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 136 5.493809 ACCGTAATTGGTTGTTGCTACTAT 58.506 37.500 0.00 0.00 39.99 2.12
327 357 2.436115 GCTACAACCGGAGCCACC 60.436 66.667 9.46 0.00 32.25 4.61
378 409 2.357034 GGTCAAGGCAGCGACGAA 60.357 61.111 0.00 0.00 32.74 3.85
405 436 2.966732 GCGAGGGTGGGGATCAACA 61.967 63.158 0.00 0.00 33.91 3.33
553 589 4.746466 GAGGAGGAAGAAGATCTGGGATA 58.254 47.826 0.00 0.00 0.00 2.59
558 594 6.272090 GGAGGAAGAAGATCTGGGATAAATCT 59.728 42.308 0.00 0.00 0.00 2.40
640 687 1.911293 GCGCAGATCACTCGCCAAAA 61.911 55.000 0.30 0.00 42.71 2.44
649 696 2.127251 CACTCGCCAAAAGAAAAAGGC 58.873 47.619 0.00 0.00 43.61 4.35
685 732 6.103997 TCTGGTTTTAGTGTCCGTCATATTC 58.896 40.000 0.00 0.00 0.00 1.75
697 744 6.096036 GTCCGTCATATTCAGTGGATCATAG 58.904 44.000 0.00 0.00 0.00 2.23
698 745 4.867047 CCGTCATATTCAGTGGATCATAGC 59.133 45.833 0.00 0.00 0.00 2.97
724 771 4.079844 TGGAATTGGATGCTGGTCTGATAA 60.080 41.667 0.00 0.00 0.00 1.75
725 772 4.518211 GGAATTGGATGCTGGTCTGATAAG 59.482 45.833 0.00 0.00 0.00 1.73
726 773 2.627515 TGGATGCTGGTCTGATAAGC 57.372 50.000 7.39 7.39 37.46 3.09
729 776 3.441244 TGCTGGTCTGATAAGCACG 57.559 52.632 11.73 0.00 41.83 5.34
730 777 0.108186 TGCTGGTCTGATAAGCACGG 60.108 55.000 11.73 0.00 41.83 4.94
731 778 0.811616 GCTGGTCTGATAAGCACGGG 60.812 60.000 9.00 0.00 36.91 5.28
799 1110 2.632987 ATATCCGGGTAGTTTGCACC 57.367 50.000 0.00 0.00 35.15 5.01
806 1117 1.515521 GGTAGTTTGCACCAGCGCTT 61.516 55.000 7.50 0.00 46.23 4.68
812 1123 3.443681 AGTTTGCACCAGCGCTTTATTAT 59.556 39.130 7.50 0.00 46.23 1.28
820 1131 3.004734 CCAGCGCTTTATTATTTGGGAGG 59.995 47.826 7.50 0.00 0.00 4.30
1231 1542 3.114668 TGCACAAACACTACACGGTAT 57.885 42.857 0.00 0.00 0.00 2.73
1319 1630 4.023234 TACGCCGTGGCCACCATT 62.023 61.111 29.95 14.08 35.28 3.16
1545 1857 6.108687 CACAGGAGTAAGTTCATCAAGCATA 58.891 40.000 0.00 0.00 0.00 3.14
1922 2247 8.475639 GTTACCAGATATTCACTGTTAGAAGGA 58.524 37.037 0.00 0.00 34.04 3.36
1932 2257 5.894393 TCACTGTTAGAAGGAATAGAGAGGG 59.106 44.000 0.00 0.00 0.00 4.30
1940 2265 4.286813 AGGAATAGAGAGGGATTGGTGA 57.713 45.455 0.00 0.00 0.00 4.02
1991 2319 9.916360 TCGTGGACATATATATAGGAGTACATT 57.084 33.333 11.22 0.00 0.00 2.71
2100 2431 0.659427 CACAATGGTAGCGATGCAGG 59.341 55.000 0.00 0.00 0.00 4.85
2163 2496 0.316204 CTCCCACAGTCGTAACGGTT 59.684 55.000 0.00 0.00 30.93 4.44
2170 2503 1.795872 CAGTCGTAACGGTTGATGCAA 59.204 47.619 3.07 0.00 0.00 4.08
2202 2542 1.562008 TGACTGGAGTGGAAACCAACA 59.438 47.619 0.00 0.00 34.18 3.33
2312 2654 1.369091 AAGAATGCCGTGGTCGATGC 61.369 55.000 0.00 0.00 39.71 3.91
2313 2655 3.155470 GAATGCCGTGGTCGATGCG 62.155 63.158 0.00 0.00 39.71 4.73
2424 7215 2.359975 GGTGTGCCGGGAAGAAGG 60.360 66.667 2.18 0.00 0.00 3.46
2499 7290 0.582005 GAAGGCATGCGTCGGTATTC 59.418 55.000 14.16 2.48 0.00 1.75
2547 7338 4.724022 ACGAAGTTGACGAAGCGT 57.276 50.000 0.00 0.00 37.78 5.07
2562 7353 2.709475 CGTCGCATTAGGCTTGCC 59.291 61.111 2.97 2.97 41.67 4.52
2565 7356 1.451927 TCGCATTAGGCTTGCCAGG 60.452 57.895 14.54 0.00 41.67 4.45
2634 7425 0.459585 GGCATGCGTAGACGAGGAAA 60.460 55.000 12.44 0.00 43.02 3.13
2662 7453 1.369091 GCTGTACGCCATGTTGAGGG 61.369 60.000 0.00 0.00 0.00 4.30
2894 7747 3.210012 AATTGGTGGACGGGCAGCT 62.210 57.895 0.00 0.00 0.00 4.24
2895 7748 1.847798 AATTGGTGGACGGGCAGCTA 61.848 55.000 0.00 0.00 0.00 3.32
2896 7749 2.536997 ATTGGTGGACGGGCAGCTAC 62.537 60.000 0.00 0.00 0.00 3.58
2909 7762 4.587189 GCTACGGCTGCTACGGGG 62.587 72.222 0.00 0.00 35.23 5.73
2913 7766 2.645394 TACGGCTGCTACGGGGGTAT 62.645 60.000 0.00 0.00 35.23 2.73
2924 7777 3.845259 GGGGTATCAGCGACGGCA 61.845 66.667 0.00 0.00 43.41 5.69
2934 7787 1.153706 GCGACGGCAGCTAGGTTAA 60.154 57.895 0.00 0.00 39.62 2.01
3104 7964 2.280186 CGCTATGGTCGGAAGGGC 60.280 66.667 0.00 0.00 0.00 5.19
3106 7966 2.792947 GCTATGGTCGGAAGGGCGA 61.793 63.158 0.00 0.00 0.00 5.54
3107 7967 1.067582 CTATGGTCGGAAGGGCGAC 59.932 63.158 0.00 0.00 34.71 5.19
3412 8415 0.833287 AGGACATCCTTCATGGGACG 59.167 55.000 0.00 0.00 46.09 4.79
3448 8451 2.502538 CAATCAATGGGCCAGATTGGTT 59.497 45.455 28.24 21.18 42.90 3.67
3459 8462 2.746904 CCAGATTGGTTGCACGACATAA 59.253 45.455 0.00 0.00 31.35 1.90
3510 8515 0.599466 ATCTGATCGCGCATGAGGTG 60.599 55.000 8.75 0.00 0.00 4.00
3514 8519 2.635229 GATCGCGCATGAGGTGAGGT 62.635 60.000 8.75 0.00 0.00 3.85
3520 8525 0.253044 GCATGAGGTGAGGTAAGCCA 59.747 55.000 0.00 0.00 37.19 4.75
3628 8644 2.985847 GACACCTGGGCTGCCAAC 60.986 66.667 22.05 4.31 0.00 3.77
3916 9083 1.600916 GAAGAAGCCAGCCGGTTGT 60.601 57.895 17.69 0.00 30.54 3.32
3934 9103 4.502604 GGTTGTGCTAGTGTTGGAGTAGAA 60.503 45.833 0.00 0.00 29.82 2.10
3979 9153 1.635663 GGGCGACACAAACCGATCTG 61.636 60.000 0.00 0.00 0.00 2.90
3984 9158 3.254060 CGACACAAACCGATCTGAGATT 58.746 45.455 0.00 0.00 0.00 2.40
4094 9274 3.870606 GTCAACACGACCGATGGG 58.129 61.111 0.00 0.00 38.85 4.00
4113 9293 1.755783 CGAACCCTAGGTACGGGCT 60.756 63.158 8.29 0.00 46.04 5.19
4115 9295 0.974525 GAACCCTAGGTACGGGCTGT 60.975 60.000 8.29 3.57 46.04 4.40
4268 9467 4.537751 ACCGATCTGATGGAAGAGACTAA 58.462 43.478 11.46 0.00 0.00 2.24
4377 9577 1.244816 GCTAGCCGGGTTTTGAACTT 58.755 50.000 13.43 0.00 0.00 2.66
4390 9590 5.009710 GGTTTTGAACTTAAGACCTCTTGGG 59.990 44.000 10.09 0.00 37.40 4.12
4391 9591 4.367039 TTGAACTTAAGACCTCTTGGGG 57.633 45.455 10.09 0.00 40.03 4.96
4459 9675 9.130312 GAAGAGACTAGGCAATACATTTATACG 57.870 37.037 0.00 0.00 0.00 3.06
4496 9731 2.631545 AGTATGTTGTATCCCCTACCGC 59.368 50.000 0.00 0.00 0.00 5.68
4525 9761 3.928992 GTGATACAGTGATGAGTGGTGTG 59.071 47.826 0.00 0.00 0.00 3.82
4559 9795 9.119418 CCCAAAACCTTTTTCTTTAATGTTGAT 57.881 29.630 0.00 0.00 0.00 2.57
4627 9863 5.075493 ACATCCTCAAAAGAGAAATGCACT 58.925 37.500 0.00 0.00 0.00 4.40
4656 9892 3.614616 AGCGAGCGTCAGAAAATAAGAAG 59.385 43.478 0.00 0.00 0.00 2.85
4661 9897 3.872630 GCGTCAGAAAATAAGAAGGGGGT 60.873 47.826 0.00 0.00 0.00 4.95
4663 9899 3.444034 GTCAGAAAATAAGAAGGGGGTGC 59.556 47.826 0.00 0.00 0.00 5.01
4664 9900 3.333680 TCAGAAAATAAGAAGGGGGTGCT 59.666 43.478 0.00 0.00 0.00 4.40
4746 9984 9.838975 CTAAAGCATCATAAAACATACAACACA 57.161 29.630 0.00 0.00 0.00 3.72
4762 10000 0.466189 CACACCAGAAGGCCAACACT 60.466 55.000 5.01 0.00 39.06 3.55
4768 10006 0.109342 AGAAGGCCAACACTCCACAG 59.891 55.000 5.01 0.00 0.00 3.66
4801 10039 1.202114 GGCATTCAAATGTCTTCGCCA 59.798 47.619 4.76 0.00 37.99 5.69
4870 12729 6.089551 CCACAAGAATATCCACGAATATCGAC 59.910 42.308 6.78 0.00 43.74 4.20
4941 12800 1.009829 GCGAGGTTGGCTGACATAAG 58.990 55.000 0.00 0.00 0.00 1.73
4947 12806 2.633488 GTTGGCTGACATAAGTCTCCC 58.367 52.381 0.00 0.86 45.20 4.30
4964 12823 2.174107 CGACGCACCTTGCATGTG 59.826 61.111 11.46 11.46 45.36 3.21
4965 12824 2.316867 CGACGCACCTTGCATGTGA 61.317 57.895 18.17 0.00 45.36 3.58
4974 12833 1.404391 CCTTGCATGTGAAGGATGCTC 59.596 52.381 16.69 0.00 45.45 4.26
5196 13057 1.339610 GACTGCACTATCGATGCCTCT 59.660 52.381 8.54 0.00 42.69 3.69
5214 13076 1.968493 TCTAACAAGGAGACGTGCCTT 59.032 47.619 12.32 12.32 46.36 4.35
5291 13153 2.603171 ACCCGCCCAAAACCATGG 60.603 61.111 11.19 11.19 40.35 3.66
5331 13193 0.981183 TACCACCTCCATGAAACGCT 59.019 50.000 0.00 0.00 0.00 5.07
5376 13238 4.436998 CCGTGTCCCAGAGGTCGC 62.437 72.222 0.00 0.00 0.00 5.19
5419 13281 2.668550 ACCAGGAAAGCCGAACGC 60.669 61.111 0.00 0.00 39.96 4.84
5423 13285 3.343421 GGAAAGCCGAACGCGTGT 61.343 61.111 14.98 2.40 44.76 4.49
5444 13307 3.780624 CGTAAGTAGGCCTGCCAAT 57.219 52.632 17.99 6.05 38.92 3.16
5454 13317 3.500343 AGGCCTGCCAATAAACCATATC 58.500 45.455 3.11 0.00 38.92 1.63
5593 13456 1.343821 CGCGTCCGCACATTTCTAC 59.656 57.895 12.58 0.00 42.06 2.59
5607 13470 2.680693 TTCTACGTCAACGCGCACCA 62.681 55.000 5.73 0.00 44.43 4.17
5685 13548 2.800736 GCGCCATTCCACACCATC 59.199 61.111 0.00 0.00 0.00 3.51
5688 13551 2.120909 GCCATTCCACACCATCCCG 61.121 63.158 0.00 0.00 0.00 5.14
5691 13554 2.966732 ATTCCACACCATCCCGCGT 61.967 57.895 4.92 0.00 0.00 6.01
5849 13712 0.686112 GGGGTGAGTCCTGAGAGAGG 60.686 65.000 0.00 0.00 44.45 3.69
5850 13713 1.326951 GGGTGAGTCCTGAGAGAGGC 61.327 65.000 0.00 0.00 42.47 4.70
5852 13715 1.555967 GTGAGTCCTGAGAGAGGCTT 58.444 55.000 0.00 0.00 42.47 4.35
5853 13716 2.621929 GGTGAGTCCTGAGAGAGGCTTA 60.622 54.545 0.00 0.00 42.47 3.09
5861 13724 0.747255 GAGAGAGGCTTATGTGGCGA 59.253 55.000 0.00 0.00 37.59 5.54
5862 13725 0.461961 AGAGAGGCTTATGTGGCGAC 59.538 55.000 0.00 0.00 37.59 5.19
5913 13890 0.302890 GCGATTTGCTGTCCTGATCG 59.697 55.000 0.00 0.00 41.67 3.69
5914 13891 0.933097 CGATTTGCTGTCCTGATCGG 59.067 55.000 0.00 0.00 36.79 4.18
5915 13892 1.740380 CGATTTGCTGTCCTGATCGGT 60.740 52.381 0.00 0.00 36.79 4.69
5996 13973 2.046604 GTTTCTAGGGCGGCGGTT 60.047 61.111 9.78 0.00 0.00 4.44
6045 14022 1.216178 GCATGTGGATGGTTGTGGC 59.784 57.895 0.00 0.00 0.00 5.01
6065 14042 1.811558 CGGTCATCCATGGTGGTGATC 60.812 57.143 12.58 13.51 39.03 2.92
6075 14052 2.994995 TGGTGATCAGGCCGACGT 60.995 61.111 0.00 0.00 0.00 4.34
6081 14058 2.921538 GATCAGGCCGACGTCGTCTG 62.922 65.000 33.49 33.49 38.85 3.51
6101 14078 2.281761 CTTCACAGCGGCAAGGGT 60.282 61.111 1.45 0.00 0.00 4.34
6113 14090 1.689273 GGCAAGGGTCTAGACATCGAT 59.311 52.381 23.91 7.81 0.00 3.59
6132 14134 0.764890 TGGTGAGTTGGAAGGTGAGG 59.235 55.000 0.00 0.00 0.00 3.86
6137 14139 1.070786 GTTGGAAGGTGAGGACGCA 59.929 57.895 0.00 0.00 0.00 5.24
6164 14166 2.277692 CGATGACGACGGCGCTTA 60.278 61.111 12.58 0.00 42.48 3.09
6165 14167 1.657487 CGATGACGACGGCGCTTAT 60.657 57.895 12.58 1.55 42.48 1.73
6219 14221 4.412528 AGTTGTGGTTCTTCCCTTCTACTT 59.587 41.667 0.00 0.00 34.77 2.24
6274 14277 9.658799 AGAGATTTCAATATGGATTACATACGG 57.341 33.333 0.00 0.00 44.41 4.02
6281 14284 7.717436 TCAATATGGATTACATACGGAGCAAAA 59.283 33.333 0.00 0.00 44.41 2.44
6283 14286 9.733556 AATATGGATTACATACGGAGCAAAATA 57.266 29.630 0.00 0.00 44.41 1.40
6285 14288 7.867305 TGGATTACATACGGAGCAAAATAAA 57.133 32.000 0.00 0.00 0.00 1.40
6349 14359 6.694411 CACACTGAAATCTCCAAAAAGACTTG 59.306 38.462 0.00 0.00 0.00 3.16
6373 14383 9.498176 TTGTATTTAGAAACAAAGGGAGTAGTC 57.502 33.333 0.00 0.00 32.86 2.59
6374 14384 7.816031 TGTATTTAGAAACAAAGGGAGTAGTCG 59.184 37.037 0.00 0.00 0.00 4.18
6375 14385 6.409524 TTTAGAAACAAAGGGAGTAGTCGA 57.590 37.500 0.00 0.00 0.00 4.20
6376 14386 6.600882 TTAGAAACAAAGGGAGTAGTCGAT 57.399 37.500 0.00 0.00 0.00 3.59
6377 14387 7.707624 TTAGAAACAAAGGGAGTAGTCGATA 57.292 36.000 0.00 0.00 0.00 2.92
6380 14390 4.985538 ACAAAGGGAGTAGTCGATACTG 57.014 45.455 10.86 2.14 45.06 2.74
6441 14451 3.857665 CGTCACATATTTGTCGTGCTACT 59.142 43.478 1.11 0.00 32.34 2.57
6581 14643 2.032071 GTGGCGGTGGTAGTGCTT 59.968 61.111 0.00 0.00 0.00 3.91
6692 15431 3.149981 GCCATGCCTAGATTTACTTCCC 58.850 50.000 0.00 0.00 0.00 3.97
6721 15460 5.047872 TCACTAGTGTTTGAGGCGTGTTATA 60.048 40.000 21.99 0.00 0.00 0.98
6771 15513 2.550606 ACACAGTCTCTTCTCACGAGTC 59.449 50.000 0.00 0.00 0.00 3.36
6874 15616 2.264813 CGTGGTTATGACGTTCGGATT 58.735 47.619 0.00 0.00 32.06 3.01
7048 15795 1.879380 GTGTTGGCTGTGTGCATCTTA 59.121 47.619 0.00 0.00 45.15 2.10
7184 15931 4.832823 CCCAAACCTACTGTGAGGAAATTT 59.167 41.667 9.37 0.00 39.15 1.82
7187 15934 7.178451 CCCAAACCTACTGTGAGGAAATTTATT 59.822 37.037 9.37 0.00 39.15 1.40
7275 16051 2.304761 ACTTCTATGCGTTCCAGGGAAA 59.695 45.455 1.58 0.00 35.75 3.13
7465 16241 2.908688 TTCCTTTTGGCTTTTGGCTC 57.091 45.000 0.00 0.00 46.20 4.70
7477 16253 4.047142 GCTTTTGGCTCAAGTGAAAGAAG 58.953 43.478 0.00 0.00 38.06 2.85
7784 16563 6.862209 TGAAGCACTGTAACATCTTTTTGTT 58.138 32.000 0.00 0.00 42.31 2.83
7901 16680 2.159531 TGATTGCTTGTATCTGCGTTGC 60.160 45.455 0.00 0.00 0.00 4.17
7908 16687 4.034510 GCTTGTATCTGCGTTGCTAATTCT 59.965 41.667 0.00 0.00 0.00 2.40
7922 16701 3.381908 GCTAATTCTCCGAAGAGGTGAGA 59.618 47.826 0.00 0.00 42.74 3.27
7934 16713 4.232188 AGAGGTGAGAATGATGCAACAT 57.768 40.909 3.21 3.21 0.00 2.71
7936 16715 5.366460 AGAGGTGAGAATGATGCAACATAG 58.634 41.667 10.15 0.00 0.00 2.23
7955 16734 3.706600 AGCAACGGTAAGTATTTCCCA 57.293 42.857 0.00 0.00 30.90 4.37
7960 16739 4.628963 ACGGTAAGTATTTCCCACAGTT 57.371 40.909 0.00 0.00 30.90 3.16
7963 16742 7.422465 ACGGTAAGTATTTCCCACAGTTATA 57.578 36.000 0.00 0.00 30.90 0.98
7985 16764 9.762381 TTATAAAACCAAGGTTATCAATCCAGT 57.238 29.630 4.68 0.00 37.35 4.00
8012 16791 6.016610 GGAGAACCAAGCAACACTATGTAAAA 60.017 38.462 0.00 0.00 35.97 1.52
8066 16846 3.206090 AACGCGTAAGAGGGTTGTC 57.794 52.632 14.46 0.00 44.01 3.18
8099 16879 9.929180 TCCTCGGTATTGAGATAGATAAAATTG 57.071 33.333 0.00 0.00 38.28 2.32
8223 17005 9.853177 AAATAGTATGAAAGGAAATAGACCTGG 57.147 33.333 0.00 0.00 37.85 4.45
8224 17006 6.253946 AGTATGAAAGGAAATAGACCTGGG 57.746 41.667 0.00 0.00 37.85 4.45
8225 17007 4.526438 ATGAAAGGAAATAGACCTGGGG 57.474 45.455 0.00 0.00 37.85 4.96
8226 17008 2.025321 TGAAAGGAAATAGACCTGGGGC 60.025 50.000 0.00 0.00 37.85 5.80
8227 17009 0.927029 AAGGAAATAGACCTGGGGCC 59.073 55.000 0.00 0.00 37.85 5.80
8228 17010 0.994050 AGGAAATAGACCTGGGGCCC 60.994 60.000 18.17 18.17 36.30 5.80
8229 17011 1.286305 GGAAATAGACCTGGGGCCCA 61.286 60.000 26.87 26.87 0.00 5.36
8230 17012 0.853530 GAAATAGACCTGGGGCCCAT 59.146 55.000 28.95 13.25 30.82 4.00
8231 17013 2.062636 GAAATAGACCTGGGGCCCATA 58.937 52.381 28.95 16.47 30.82 2.74
8232 17014 1.747444 AATAGACCTGGGGCCCATAG 58.253 55.000 28.95 22.92 30.82 2.23
8233 17015 0.874594 ATAGACCTGGGGCCCATAGA 59.125 55.000 28.95 10.54 30.82 1.98
8234 17016 0.874594 TAGACCTGGGGCCCATAGAT 59.125 55.000 28.95 15.42 30.82 1.98
8235 17017 0.028642 AGACCTGGGGCCCATAGATT 60.029 55.000 28.95 8.58 30.82 2.40
8236 17018 0.853530 GACCTGGGGCCCATAGATTT 59.146 55.000 28.95 6.57 30.82 2.17
8237 17019 0.853530 ACCTGGGGCCCATAGATTTC 59.146 55.000 28.95 3.34 30.82 2.17
8238 17020 0.852842 CCTGGGGCCCATAGATTTCA 59.147 55.000 28.95 8.67 30.82 2.69
8239 17021 1.479389 CCTGGGGCCCATAGATTTCAC 60.479 57.143 28.95 1.60 30.82 3.18
8240 17022 1.496429 CTGGGGCCCATAGATTTCACT 59.504 52.381 28.95 0.00 30.82 3.41
8241 17023 2.711009 CTGGGGCCCATAGATTTCACTA 59.289 50.000 28.95 0.00 30.82 2.74
8242 17024 2.711009 TGGGGCCCATAGATTTCACTAG 59.289 50.000 24.76 0.00 0.00 2.57
8243 17025 2.711547 GGGGCCCATAGATTTCACTAGT 59.288 50.000 26.86 0.00 0.00 2.57
8244 17026 3.496870 GGGGCCCATAGATTTCACTAGTG 60.497 52.174 26.86 17.17 0.00 2.74
8245 17027 3.496870 GGGCCCATAGATTTCACTAGTGG 60.497 52.174 19.95 3.67 0.00 4.00
8246 17028 3.142174 GCCCATAGATTTCACTAGTGGC 58.858 50.000 22.48 10.17 36.53 5.01
8247 17029 3.181450 GCCCATAGATTTCACTAGTGGCT 60.181 47.826 22.48 15.85 38.64 4.75
8248 17030 4.687219 GCCCATAGATTTCACTAGTGGCTT 60.687 45.833 22.48 7.48 38.64 4.35
8249 17031 5.059833 CCCATAGATTTCACTAGTGGCTTC 58.940 45.833 22.48 15.32 0.00 3.86
8250 17032 5.163258 CCCATAGATTTCACTAGTGGCTTCT 60.163 44.000 22.48 20.54 0.00 2.85
8251 17033 5.988561 CCATAGATTTCACTAGTGGCTTCTC 59.011 44.000 22.48 12.02 0.00 2.87
8252 17034 6.183360 CCATAGATTTCACTAGTGGCTTCTCT 60.183 42.308 22.48 17.45 0.00 3.10
8253 17035 5.337578 AGATTTCACTAGTGGCTTCTCTC 57.662 43.478 22.48 9.86 0.00 3.20
8254 17036 3.577649 TTTCACTAGTGGCTTCTCTCG 57.422 47.619 22.48 0.00 0.00 4.04
8255 17037 2.491675 TCACTAGTGGCTTCTCTCGA 57.508 50.000 22.48 0.00 0.00 4.04
8256 17038 2.360844 TCACTAGTGGCTTCTCTCGAG 58.639 52.381 22.48 5.93 0.00 4.04
8257 17039 2.027100 TCACTAGTGGCTTCTCTCGAGA 60.027 50.000 22.48 15.70 35.27 4.04
8258 17040 2.750166 CACTAGTGGCTTCTCTCGAGAA 59.250 50.000 17.36 8.88 44.47 2.87
8259 17041 3.191581 CACTAGTGGCTTCTCTCGAGAAA 59.808 47.826 17.36 12.26 45.75 2.52
8260 17042 3.827302 ACTAGTGGCTTCTCTCGAGAAAA 59.173 43.478 17.36 9.00 45.75 2.29
8261 17043 3.971245 AGTGGCTTCTCTCGAGAAAAT 57.029 42.857 17.36 0.00 45.75 1.82
8262 17044 5.652891 ACTAGTGGCTTCTCTCGAGAAAATA 59.347 40.000 17.36 0.00 45.75 1.40
8263 17045 5.004922 AGTGGCTTCTCTCGAGAAAATAG 57.995 43.478 17.36 11.62 45.75 1.73
8264 17046 3.553917 GTGGCTTCTCTCGAGAAAATAGC 59.446 47.826 17.36 19.46 45.75 2.97
8265 17047 3.195610 TGGCTTCTCTCGAGAAAATAGCA 59.804 43.478 25.77 15.91 45.75 3.49
8266 17048 3.553917 GGCTTCTCTCGAGAAAATAGCAC 59.446 47.826 25.77 17.14 45.75 4.40
8267 17049 4.177026 GCTTCTCTCGAGAAAATAGCACA 58.823 43.478 17.36 0.00 45.75 4.57
8268 17050 4.032331 GCTTCTCTCGAGAAAATAGCACAC 59.968 45.833 17.36 0.00 45.75 3.82
8269 17051 3.759418 TCTCTCGAGAAAATAGCACACG 58.241 45.455 17.36 0.00 33.91 4.49
8270 17052 2.854777 CTCTCGAGAAAATAGCACACGG 59.145 50.000 17.36 0.00 0.00 4.94
8271 17053 2.230508 TCTCGAGAAAATAGCACACGGT 59.769 45.455 14.01 0.00 0.00 4.83
8272 17054 2.333926 TCGAGAAAATAGCACACGGTG 58.666 47.619 6.58 6.58 36.51 4.94
8273 17055 1.393539 CGAGAAAATAGCACACGGTGG 59.606 52.381 13.48 2.76 33.64 4.61
8274 17056 1.737793 GAGAAAATAGCACACGGTGGG 59.262 52.381 13.48 9.95 33.64 4.61
8275 17057 1.073284 AGAAAATAGCACACGGTGGGT 59.927 47.619 12.67 9.09 33.64 4.51
8276 17058 2.303600 AGAAAATAGCACACGGTGGGTA 59.696 45.455 12.67 10.91 33.64 3.69
8277 17059 2.863132 AAATAGCACACGGTGGGTAA 57.137 45.000 12.67 0.55 33.64 2.85
8278 17060 2.863132 AATAGCACACGGTGGGTAAA 57.137 45.000 12.67 0.00 33.64 2.01
8279 17061 2.103537 ATAGCACACGGTGGGTAAAC 57.896 50.000 12.67 0.00 33.64 2.01
8280 17062 0.757512 TAGCACACGGTGGGTAAACA 59.242 50.000 12.67 0.00 33.64 2.83
8281 17063 0.107116 AGCACACGGTGGGTAAACAA 60.107 50.000 12.67 0.00 33.64 2.83
8282 17064 0.739561 GCACACGGTGGGTAAACAAA 59.260 50.000 12.67 0.00 33.64 2.83
8283 17065 1.338655 GCACACGGTGGGTAAACAAAT 59.661 47.619 12.67 0.00 33.64 2.32
8284 17066 2.223852 GCACACGGTGGGTAAACAAATT 60.224 45.455 12.67 0.00 33.64 1.82
8285 17067 3.004524 GCACACGGTGGGTAAACAAATTA 59.995 43.478 12.67 0.00 33.64 1.40
8286 17068 4.538917 CACACGGTGGGTAAACAAATTAC 58.461 43.478 13.48 0.00 42.68 1.89
8287 17069 4.276431 CACACGGTGGGTAAACAAATTACT 59.724 41.667 13.48 0.00 42.93 2.24
8288 17070 5.469421 CACACGGTGGGTAAACAAATTACTA 59.531 40.000 13.48 0.00 42.93 1.82
8289 17071 6.149807 CACACGGTGGGTAAACAAATTACTAT 59.850 38.462 13.48 0.00 42.93 2.12
8290 17072 6.716173 ACACGGTGGGTAAACAAATTACTATT 59.284 34.615 13.48 0.00 42.93 1.73
8291 17073 7.024768 CACGGTGGGTAAACAAATTACTATTG 58.975 38.462 0.00 0.00 42.93 1.90
8292 17074 6.151480 ACGGTGGGTAAACAAATTACTATTGG 59.849 38.462 0.00 0.00 42.93 3.16
8293 17075 6.404954 CGGTGGGTAAACAAATTACTATTGGG 60.405 42.308 0.00 0.00 42.93 4.12
8294 17076 6.334989 GTGGGTAAACAAATTACTATTGGGC 58.665 40.000 0.00 0.00 42.93 5.36
8295 17077 6.017192 TGGGTAAACAAATTACTATTGGGCA 58.983 36.000 0.00 0.00 42.93 5.36
8296 17078 6.497259 TGGGTAAACAAATTACTATTGGGCAA 59.503 34.615 0.00 0.00 42.93 4.52
8297 17079 7.181125 TGGGTAAACAAATTACTATTGGGCAAT 59.819 33.333 0.00 0.00 42.93 3.56
8298 17080 8.044309 GGGTAAACAAATTACTATTGGGCAATT 58.956 33.333 0.00 0.00 42.93 2.32
8299 17081 8.878769 GGTAAACAAATTACTATTGGGCAATTG 58.121 33.333 0.00 0.00 42.93 2.32
8300 17082 9.646427 GTAAACAAATTACTATTGGGCAATTGA 57.354 29.630 10.34 0.00 40.65 2.57
8304 17086 9.420118 ACAAATTACTATTGGGCAATTGATAGA 57.580 29.630 10.34 0.00 32.50 1.98
8309 17091 6.809869 ACTATTGGGCAATTGATAGAAAAGC 58.190 36.000 10.34 0.00 32.50 3.51
8310 17092 5.680594 ATTGGGCAATTGATAGAAAAGCA 57.319 34.783 10.34 0.00 0.00 3.91
8311 17093 5.480642 TTGGGCAATTGATAGAAAAGCAA 57.519 34.783 10.34 0.00 0.00 3.91
8312 17094 5.480642 TGGGCAATTGATAGAAAAGCAAA 57.519 34.783 10.34 0.00 0.00 3.68
8313 17095 6.052405 TGGGCAATTGATAGAAAAGCAAAT 57.948 33.333 10.34 0.00 0.00 2.32
8314 17096 7.180322 TGGGCAATTGATAGAAAAGCAAATA 57.820 32.000 10.34 0.00 0.00 1.40
8315 17097 7.619050 TGGGCAATTGATAGAAAAGCAAATAA 58.381 30.769 10.34 0.00 0.00 1.40
8316 17098 8.266473 TGGGCAATTGATAGAAAAGCAAATAAT 58.734 29.630 10.34 0.00 0.00 1.28
8317 17099 8.768019 GGGCAATTGATAGAAAAGCAAATAATC 58.232 33.333 10.34 0.00 0.00 1.75
8318 17100 9.316730 GGCAATTGATAGAAAAGCAAATAATCA 57.683 29.630 10.34 0.00 0.00 2.57
8323 17105 9.720667 TTGATAGAAAAGCAAATAATCATGACG 57.279 29.630 0.00 0.00 0.00 4.35
8324 17106 9.108284 TGATAGAAAAGCAAATAATCATGACGA 57.892 29.630 0.00 0.00 0.00 4.20
8329 17111 9.334693 GAAAAGCAAATAATCATGACGATATCC 57.665 33.333 0.00 0.00 32.51 2.59
8330 17112 7.984422 AAGCAAATAATCATGACGATATCCA 57.016 32.000 0.00 0.00 32.51 3.41
8331 17113 7.984422 AGCAAATAATCATGACGATATCCAA 57.016 32.000 0.00 0.00 32.51 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 272 1.002134 CGACTCCCACCAGCCAATT 60.002 57.895 0.00 0.00 0.00 2.32
400 431 2.029964 GGCCGTCCTCGTTGTTGA 59.970 61.111 0.00 0.00 35.01 3.18
565 605 0.461339 GGCCGTTTGATCTAGCGGAA 60.461 55.000 30.12 0.00 46.33 4.30
566 606 1.143183 GGCCGTTTGATCTAGCGGA 59.857 57.895 30.12 0.00 46.33 5.54
640 687 2.497273 AGTGCACAAACTGCCTTTTTCT 59.503 40.909 21.04 0.00 46.51 2.52
649 696 3.508744 AAAACCAGAGTGCACAAACTG 57.491 42.857 21.04 22.06 0.00 3.16
685 732 5.221185 CCAATTCCAAAGCTATGATCCACTG 60.221 44.000 0.00 0.00 0.00 3.66
697 744 1.551883 ACCAGCATCCAATTCCAAAGC 59.448 47.619 0.00 0.00 0.00 3.51
698 745 3.094572 AGACCAGCATCCAATTCCAAAG 58.905 45.455 0.00 0.00 0.00 2.77
730 777 4.783621 TGCACTCCGATGCCAGCC 62.784 66.667 4.19 0.00 45.50 4.85
731 778 2.747460 TTGCACTCCGATGCCAGC 60.747 61.111 0.00 0.00 45.50 4.85
733 780 0.608856 ATTGTTGCACTCCGATGCCA 60.609 50.000 0.00 0.00 45.50 4.92
734 781 1.378531 TATTGTTGCACTCCGATGCC 58.621 50.000 0.00 0.00 45.50 4.40
735 782 5.149273 CAATATATTGTTGCACTCCGATGC 58.851 41.667 16.03 0.00 38.25 3.91
736 783 5.335113 CCCAATATATTGTTGCACTCCGATG 60.335 44.000 21.20 4.21 36.06 3.84
737 784 4.761739 CCCAATATATTGTTGCACTCCGAT 59.238 41.667 21.20 0.00 36.06 4.18
738 785 4.133820 CCCAATATATTGTTGCACTCCGA 58.866 43.478 21.20 0.00 36.06 4.55
739 786 3.882888 ACCCAATATATTGTTGCACTCCG 59.117 43.478 21.20 5.43 36.06 4.63
740 787 6.017109 CACTACCCAATATATTGTTGCACTCC 60.017 42.308 21.20 0.00 36.06 3.85
741 788 6.017109 CCACTACCCAATATATTGTTGCACTC 60.017 42.308 21.20 0.00 36.06 3.51
742 789 5.827797 CCACTACCCAATATATTGTTGCACT 59.172 40.000 21.20 3.03 36.06 4.40
746 795 4.215399 CCGCCACTACCCAATATATTGTTG 59.785 45.833 21.20 14.99 36.06 3.33
799 1110 3.632145 ACCTCCCAAATAATAAAGCGCTG 59.368 43.478 12.58 0.00 0.00 5.18
806 1117 7.310237 GCTACGGATAGACCTCCCAAATAATAA 60.310 40.741 0.00 0.00 36.31 1.40
812 1123 2.037144 GCTACGGATAGACCTCCCAAA 58.963 52.381 0.00 0.00 36.31 3.28
820 1131 2.231721 GGAGATTGGGCTACGGATAGAC 59.768 54.545 0.00 0.00 35.40 2.59
1231 1542 0.526739 CGACGATGCACATTCCCGTA 60.527 55.000 0.00 0.00 33.32 4.02
1545 1857 3.764237 AGACAAAAGGTACGTGGACAT 57.236 42.857 0.00 0.00 0.00 3.06
1733 2048 0.619832 TCCCTCTGCTGAGAGCCATT 60.620 55.000 21.10 0.00 44.11 3.16
1736 2051 1.220477 GTTCCCTCTGCTGAGAGCC 59.780 63.158 21.10 3.49 44.11 4.70
1922 2247 5.366768 TCGATTTCACCAATCCCTCTCTATT 59.633 40.000 0.00 0.00 38.54 1.73
1932 2257 7.864379 AGCAATAAATCATCGATTTCACCAATC 59.136 33.333 5.27 0.00 40.77 2.67
1940 2265 6.040166 AGGCTCAAGCAATAAATCATCGATTT 59.960 34.615 4.13 7.11 42.60 2.17
2031 2361 7.428826 CGGTTATTTAGGAAACGTAGGATAGT 58.571 38.462 0.00 0.00 32.34 2.12
2100 2431 0.603569 TTCTTCTCCAGTCTCACCGC 59.396 55.000 0.00 0.00 0.00 5.68
2163 2496 2.527671 CGACTTCCGTGTTGCATCA 58.472 52.632 0.00 0.00 0.00 3.07
2286 2628 2.048597 ACGGCATTCTTCGCACGA 60.049 55.556 0.00 0.00 0.00 4.35
2424 7215 3.253955 ACGCCTCGTCAACAATGC 58.746 55.556 0.00 0.00 33.69 3.56
2515 7306 3.433748 CGTCTTTGTCCGTCGACG 58.566 61.111 30.33 30.33 42.37 5.12
2518 7309 1.189446 CAACTTCGTCTTTGTCCGTCG 59.811 52.381 0.00 0.00 0.00 5.12
2526 7317 1.521423 CGCTTCGTCAACTTCGTCTTT 59.479 47.619 0.00 0.00 0.00 2.52
2634 7425 2.430921 GCGTACAGCTCGTGCAGT 60.431 61.111 12.58 12.36 44.04 4.40
2837 7690 2.119655 CCGCTGCTACTCCCGTAGT 61.120 63.158 0.00 0.00 44.02 2.73
2866 7719 0.035439 TCCACCAATTCCGCTCTTCC 60.035 55.000 0.00 0.00 0.00 3.46
2894 7747 2.645394 ATACCCCCGTAGCAGCCGTA 62.645 60.000 0.00 0.00 0.00 4.02
2895 7748 4.764771 TACCCCCGTAGCAGCCGT 62.765 66.667 0.00 0.00 0.00 5.68
2896 7749 3.222354 GATACCCCCGTAGCAGCCG 62.222 68.421 0.00 0.00 30.96 5.52
2901 7754 2.198287 TCGCTGATACCCCCGTAGC 61.198 63.158 0.00 0.00 0.00 3.58
2904 7757 3.524606 CGTCGCTGATACCCCCGT 61.525 66.667 0.00 0.00 0.00 5.28
2909 7762 2.071844 TAGCTGCCGTCGCTGATACC 62.072 60.000 0.00 0.00 38.38 2.73
2913 7766 3.826754 CCTAGCTGCCGTCGCTGA 61.827 66.667 0.00 0.00 38.38 4.26
2924 7777 1.437986 CCGCGCTCTTAACCTAGCT 59.562 57.895 5.56 0.00 36.56 3.32
3030 7884 1.677576 CTACTTCCCGTGGTATGCGTA 59.322 52.381 0.00 0.00 0.00 4.42
3083 7943 4.884257 TTCCGACCATAGCGCCGC 62.884 66.667 2.29 0.00 0.00 6.53
3135 7996 3.691342 CACCGAGGTCTTCCCGCA 61.691 66.667 0.00 0.00 38.74 5.69
3176 8047 2.494918 CCTTCAGGACGTAGCGGG 59.505 66.667 0.00 0.00 37.39 6.13
3444 8447 2.746904 CCTCATTTATGTCGTGCAACCA 59.253 45.455 0.00 0.00 0.00 3.67
3448 8451 1.006086 CGCCTCATTTATGTCGTGCA 58.994 50.000 0.00 0.00 0.00 4.57
3510 8515 4.913126 CACCGAGTGGCTTACCTC 57.087 61.111 0.00 0.00 39.70 3.85
3520 8525 1.908793 CACCCTGTCTCCACCGAGT 60.909 63.158 0.00 0.00 37.40 4.18
3651 8667 1.613836 ACGTTACTCAGTCGGTCCTT 58.386 50.000 0.00 0.00 0.00 3.36
3660 8676 1.140407 GCCGCTGCTACGTTACTCAG 61.140 60.000 0.00 0.00 33.53 3.35
3916 9083 2.897326 TGCTTCTACTCCAACACTAGCA 59.103 45.455 0.00 0.00 35.26 3.49
3934 9103 4.619227 CGTCAACCCCCGTGTGCT 62.619 66.667 0.00 0.00 0.00 4.40
3967 9137 3.981071 TCCAATCTCAGATCGGTTTGT 57.019 42.857 0.00 0.00 0.00 2.83
4052 9228 3.775866 GCTACCCTAGAGTCTTTTTCCCT 59.224 47.826 0.00 0.00 0.00 4.20
4094 9274 2.810403 CCCGTACCTAGGGTTCGC 59.190 66.667 14.81 0.00 43.37 4.70
4122 9302 4.408821 GCCATGACCGCCACCAGA 62.409 66.667 0.00 0.00 0.00 3.86
4296 9495 1.078143 GGGAGCCACACATGAGGAC 60.078 63.158 0.00 0.00 0.00 3.85
4297 9496 1.229625 AGGGAGCCACACATGAGGA 60.230 57.895 0.00 0.00 0.00 3.71
4377 9577 0.840288 TGCTGCCCCAAGAGGTCTTA 60.840 55.000 0.00 0.00 34.28 2.10
4390 9590 0.822532 ATTGGCTAGAGCATGCTGCC 60.823 55.000 30.95 30.95 46.52 4.85
4391 9591 0.311165 CATTGGCTAGAGCATGCTGC 59.689 55.000 28.27 22.11 45.46 5.25
4393 9593 0.106868 TGCATTGGCTAGAGCATGCT 60.107 50.000 22.92 22.92 45.25 3.79
4459 9675 8.718102 ACAACATACTGGTATAGAATGTTGAC 57.282 34.615 25.05 0.00 45.81 3.18
4496 9731 2.354821 TCATCACTGTATCACGGACTCG 59.645 50.000 0.00 0.00 43.02 4.18
4525 9761 2.928801 AAAGGTTTTGGGATTGGCAC 57.071 45.000 0.00 0.00 0.00 5.01
4559 9795 3.827008 ATGGATTTCGCAGCTCTCTTA 57.173 42.857 0.00 0.00 0.00 2.10
4561 9797 2.093288 TCAATGGATTTCGCAGCTCTCT 60.093 45.455 0.00 0.00 0.00 3.10
4627 9863 0.108851 TCTGACGCTCGCTTTATGCA 60.109 50.000 0.00 0.00 43.06 3.96
4642 9878 3.333680 AGCACCCCCTTCTTATTTTCTGA 59.666 43.478 0.00 0.00 0.00 3.27
4645 9881 3.128764 CGAAGCACCCCCTTCTTATTTTC 59.871 47.826 0.00 0.00 39.21 2.29
4656 9892 1.743394 CTTGATAAACGAAGCACCCCC 59.257 52.381 0.00 0.00 0.00 5.40
4661 9897 4.319911 CGGTTTTCCTTGATAAACGAAGCA 60.320 41.667 0.00 0.00 36.18 3.91
4663 9899 4.379082 CCCGGTTTTCCTTGATAAACGAAG 60.379 45.833 0.00 0.00 36.18 3.79
4664 9900 3.502979 CCCGGTTTTCCTTGATAAACGAA 59.497 43.478 0.00 0.00 36.18 3.85
4705 9942 4.350245 TGCTTTAGGCCTAGTCTTGACTA 58.650 43.478 13.36 9.75 40.92 2.59
4706 9943 3.173965 TGCTTTAGGCCTAGTCTTGACT 58.826 45.455 13.36 8.41 40.92 3.41
4746 9984 1.352622 TGGAGTGTTGGCCTTCTGGT 61.353 55.000 3.32 0.00 35.27 4.00
4762 10000 1.653667 CAAACGCATGTGCTGTGGA 59.346 52.632 6.08 0.00 39.79 4.02
4778 10016 2.352617 GCGAAGACATTTGAATGCCCAA 60.353 45.455 3.71 0.00 40.04 4.12
4779 10017 1.202114 GCGAAGACATTTGAATGCCCA 59.798 47.619 3.71 0.00 40.04 5.36
4801 10039 1.128200 TTGGTGTGCACTCTGGTAGT 58.872 50.000 19.41 0.00 39.81 2.73
4870 12729 1.123217 GACATAGCGCATTCGATGTCG 59.877 52.381 11.47 0.00 38.91 4.35
4964 12823 1.505477 GAGCGGCATGAGCATCCTTC 61.505 60.000 14.56 1.41 44.61 3.46
4965 12824 1.525535 GAGCGGCATGAGCATCCTT 60.526 57.895 14.56 0.00 44.61 3.36
4974 12833 0.729116 ATTTTCGTGAGAGCGGCATG 59.271 50.000 1.45 0.00 43.69 4.06
5112 12973 4.107072 TCCTGGATCCAGTCTTCTTGATT 58.893 43.478 34.49 0.00 42.15 2.57
5196 13057 2.922740 AAAGGCACGTCTCCTTGTTA 57.077 45.000 16.75 0.00 42.75 2.41
5214 13076 0.824109 CAGTCGATGGAGGTGCCTAA 59.176 55.000 0.00 0.00 37.63 2.69
5423 13285 0.901114 TGGCAGGCCTACTTACGTGA 60.901 55.000 3.98 0.00 36.94 4.35
5444 13307 2.486548 GGGCCAAGCTCGATATGGTTTA 60.487 50.000 4.39 0.00 36.57 2.01
5454 13317 2.060980 AGAGTAGGGGCCAAGCTCG 61.061 63.158 4.39 0.00 0.00 5.03
5612 13475 4.181010 CGGGACAGGCATGAGGGG 62.181 72.222 4.84 0.00 0.00 4.79
5865 13728 2.743928 GTCTGGGAGCAAGCCGTG 60.744 66.667 0.00 0.00 0.00 4.94
5870 13733 2.125350 GAGCGGTCTGGGAGCAAG 60.125 66.667 7.51 0.00 0.00 4.01
5898 13761 0.955428 GCACCGATCAGGACAGCAAA 60.955 55.000 10.05 0.00 45.00 3.68
5899 13762 1.375908 GCACCGATCAGGACAGCAA 60.376 57.895 10.05 0.00 45.00 3.91
5996 13973 1.545428 GCTGAAGGACCATCACCAACA 60.545 52.381 0.00 0.00 0.00 3.33
6045 14022 0.181114 ATCACCACCATGGATGACCG 59.819 55.000 21.47 1.38 40.96 4.79
6075 14052 1.285950 CGCTGTGAAGACCAGACGA 59.714 57.895 0.00 0.00 33.99 4.20
6081 14058 2.328099 CCTTGCCGCTGTGAAGACC 61.328 63.158 0.00 0.00 0.00 3.85
6101 14078 3.381590 CCAACTCACCATCGATGTCTAGA 59.618 47.826 23.27 13.66 0.00 2.43
6113 14090 0.764890 CCTCACCTTCCAACTCACCA 59.235 55.000 0.00 0.00 0.00 4.17
6132 14134 1.805945 ATCGACTTTCGCCTGCGTC 60.806 57.895 11.68 0.68 40.21 5.19
6137 14139 1.880894 TCGTCATCGACTTTCGCCT 59.119 52.632 0.00 0.00 41.35 5.52
6164 14166 4.323417 TCATGAAGGTAAACAACGCTCAT 58.677 39.130 0.00 0.00 32.90 2.90
6165 14167 3.734463 TCATGAAGGTAAACAACGCTCA 58.266 40.909 0.00 0.00 0.00 4.26
6219 14221 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
6255 14258 6.353404 TGCTCCGTATGTAATCCATATTGA 57.647 37.500 0.00 0.00 38.29 2.57
6273 14276 8.137437 ACAGTGTATATGCATTTATTTTGCTCC 58.863 33.333 3.54 0.00 40.77 4.70
6319 14322 3.407424 TGGAGATTTCAGTGTGGACAG 57.593 47.619 0.00 0.00 0.00 3.51
6323 14326 5.300286 AGTCTTTTTGGAGATTTCAGTGTGG 59.700 40.000 0.00 0.00 0.00 4.17
6324 14327 6.382869 AGTCTTTTTGGAGATTTCAGTGTG 57.617 37.500 0.00 0.00 0.00 3.82
6325 14328 6.378280 ACAAGTCTTTTTGGAGATTTCAGTGT 59.622 34.615 0.00 0.00 32.32 3.55
6326 14329 6.799512 ACAAGTCTTTTTGGAGATTTCAGTG 58.200 36.000 0.00 0.00 32.32 3.66
6349 14359 8.031277 TCGACTACTCCCTTTGTTTCTAAATAC 58.969 37.037 0.00 0.00 0.00 1.89
6373 14383 0.830648 TTTCCCCTGGAGCAGTATCG 59.169 55.000 0.00 0.00 31.21 2.92
6374 14384 1.134068 GGTTTCCCCTGGAGCAGTATC 60.134 57.143 0.00 0.00 31.21 2.24
6375 14385 0.919710 GGTTTCCCCTGGAGCAGTAT 59.080 55.000 0.00 0.00 31.21 2.12
6376 14386 2.383608 GGTTTCCCCTGGAGCAGTA 58.616 57.895 0.00 0.00 31.21 2.74
6377 14387 3.171348 GGTTTCCCCTGGAGCAGT 58.829 61.111 0.00 0.00 31.21 4.40
6429 14439 1.272490 CCCAAGAGAGTAGCACGACAA 59.728 52.381 0.00 0.00 0.00 3.18
6441 14451 0.404040 AAAACGATGCCCCCAAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
6581 14643 1.701031 ATGTCCCGGTCAACCACACA 61.701 55.000 0.00 0.00 35.14 3.72
6692 15431 3.120546 CGCCTCAAACACTAGTGAATGTG 60.121 47.826 29.30 22.76 39.80 3.21
6721 15460 0.609406 TCACTAGAGACGCTGTGGCT 60.609 55.000 0.00 0.00 36.09 4.75
6771 15513 0.390492 TGGCTCCAGTCGCATCATAG 59.610 55.000 0.00 0.00 0.00 2.23
6874 15616 3.603532 GAAGATGATGAAGGAGCACACA 58.396 45.455 0.00 0.00 0.00 3.72
7048 15795 0.537188 CACCCGACCTCTGCATAACT 59.463 55.000 0.00 0.00 0.00 2.24
7061 15808 1.614903 ACACGATGAGTAAACACCCGA 59.385 47.619 0.00 0.00 0.00 5.14
7141 15888 9.646522 GTTTGGGGATTGGATAGCATATATTAT 57.353 33.333 0.00 0.00 0.00 1.28
7142 15889 8.058847 GGTTTGGGGATTGGATAGCATATATTA 58.941 37.037 0.00 0.00 0.00 0.98
7143 15890 6.897413 GGTTTGGGGATTGGATAGCATATATT 59.103 38.462 0.00 0.00 0.00 1.28
7163 15910 8.576442 ACAATAAATTTCCTCACAGTAGGTTTG 58.424 33.333 0.00 0.00 37.91 2.93
7275 16051 4.505808 CTCTTGATGTTGCTGATCAGAGT 58.494 43.478 27.04 6.21 31.52 3.24
7465 16241 5.517770 CCAGCAAAGTTTCTTCTTTCACTTG 59.482 40.000 0.00 0.00 35.77 3.16
7538 16314 1.610522 GCCTGTCTGCAAATGAACTGT 59.389 47.619 0.00 0.00 0.00 3.55
7642 16420 9.949174 TTGGTTCATTAATGTGATTTGATATCG 57.051 29.630 14.97 0.00 0.00 2.92
7784 16563 4.688879 GTCATCAAAATCACCACACTCGTA 59.311 41.667 0.00 0.00 0.00 3.43
7901 16680 5.584253 TTCTCACCTCTTCGGAGAATTAG 57.416 43.478 0.00 0.00 45.90 1.73
7908 16687 2.159043 GCATCATTCTCACCTCTTCGGA 60.159 50.000 0.00 0.00 36.31 4.55
7922 16701 2.754552 ACCGTTGCTATGTTGCATCATT 59.245 40.909 15.16 1.08 42.96 2.57
7934 16713 4.020396 TGTGGGAAATACTTACCGTTGCTA 60.020 41.667 0.00 0.00 38.59 3.49
7936 16715 3.075884 TGTGGGAAATACTTACCGTTGC 58.924 45.455 0.00 0.00 38.59 4.17
7963 16742 6.663523 CCTACTGGATTGATAACCTTGGTTTT 59.336 38.462 10.52 2.70 34.57 2.43
7968 16747 6.485830 TCTCCTACTGGATTGATAACCTTG 57.514 41.667 0.00 0.00 42.29 3.61
7985 16764 4.286032 ACATAGTGTTGCTTGGTTCTCCTA 59.714 41.667 0.00 0.00 34.23 2.94
8012 16791 9.738832 GTATTTGTTATTTGTGTGTAGGTGTTT 57.261 29.630 0.00 0.00 0.00 2.83
8019 16798 9.239002 GTTGCAAGTATTTGTTATTTGTGTGTA 57.761 29.630 0.00 0.00 36.65 2.90
8020 16799 7.223777 GGTTGCAAGTATTTGTTATTTGTGTGT 59.776 33.333 0.00 0.00 36.65 3.72
8074 16854 9.712305 ACAATTTTATCTATCTCAATACCGAGG 57.288 33.333 0.00 0.00 33.59 4.63
8202 16984 5.377478 CCCCAGGTCTATTTCCTTTCATAC 58.623 45.833 0.00 0.00 32.37 2.39
8208 16990 0.927029 GGCCCCAGGTCTATTTCCTT 59.073 55.000 0.00 0.00 32.37 3.36
8209 16991 0.994050 GGGCCCCAGGTCTATTTCCT 60.994 60.000 12.23 0.00 35.45 3.36
8210 16992 1.286305 TGGGCCCCAGGTCTATTTCC 61.286 60.000 22.27 0.00 0.00 3.13
8211 16993 0.853530 ATGGGCCCCAGGTCTATTTC 59.146 55.000 22.27 0.00 36.75 2.17
8212 16994 2.065799 CTATGGGCCCCAGGTCTATTT 58.934 52.381 22.27 0.00 36.75 1.40
8213 16995 1.225694 TCTATGGGCCCCAGGTCTATT 59.774 52.381 22.27 0.00 36.75 1.73
8214 16996 0.874594 TCTATGGGCCCCAGGTCTAT 59.125 55.000 22.27 6.53 36.75 1.98
8215 16997 0.874594 ATCTATGGGCCCCAGGTCTA 59.125 55.000 22.27 0.00 36.75 2.59
8216 16998 0.028642 AATCTATGGGCCCCAGGTCT 60.029 55.000 22.27 0.00 36.75 3.85
8217 16999 0.853530 AAATCTATGGGCCCCAGGTC 59.146 55.000 22.27 0.00 36.75 3.85
8218 17000 0.853530 GAAATCTATGGGCCCCAGGT 59.146 55.000 22.27 10.29 36.75 4.00
8219 17001 0.852842 TGAAATCTATGGGCCCCAGG 59.147 55.000 22.27 9.12 36.75 4.45
8220 17002 1.496429 AGTGAAATCTATGGGCCCCAG 59.504 52.381 22.27 17.06 36.75 4.45
8221 17003 1.607225 AGTGAAATCTATGGGCCCCA 58.393 50.000 22.27 4.05 38.19 4.96
8222 17004 2.711547 ACTAGTGAAATCTATGGGCCCC 59.288 50.000 22.27 0.37 0.00 5.80
8223 17005 3.496870 CCACTAGTGAAATCTATGGGCCC 60.497 52.174 24.68 17.59 0.00 5.80
8224 17006 3.744660 CCACTAGTGAAATCTATGGGCC 58.255 50.000 24.68 0.00 0.00 5.80
8225 17007 3.142174 GCCACTAGTGAAATCTATGGGC 58.858 50.000 24.68 10.93 34.43 5.36
8226 17008 4.696479 AGCCACTAGTGAAATCTATGGG 57.304 45.455 24.68 4.31 0.00 4.00
8227 17009 5.923204 AGAAGCCACTAGTGAAATCTATGG 58.077 41.667 24.68 5.15 0.00 2.74
8228 17010 6.815089 AGAGAAGCCACTAGTGAAATCTATG 58.185 40.000 24.68 5.82 0.00 2.23
8229 17011 6.238897 CGAGAGAAGCCACTAGTGAAATCTAT 60.239 42.308 24.68 18.57 0.00 1.98
8230 17012 5.066634 CGAGAGAAGCCACTAGTGAAATCTA 59.933 44.000 24.68 0.00 0.00 1.98
8231 17013 4.142271 CGAGAGAAGCCACTAGTGAAATCT 60.142 45.833 24.68 20.83 0.00 2.40
8232 17014 4.109050 CGAGAGAAGCCACTAGTGAAATC 58.891 47.826 24.68 16.88 0.00 2.17
8233 17015 3.764434 TCGAGAGAAGCCACTAGTGAAAT 59.236 43.478 24.68 9.08 37.03 2.17
8234 17016 3.154710 TCGAGAGAAGCCACTAGTGAAA 58.845 45.455 24.68 0.00 37.03 2.69
8235 17017 2.750166 CTCGAGAGAAGCCACTAGTGAA 59.250 50.000 24.68 0.00 41.32 3.18
8236 17018 2.027100 TCTCGAGAGAAGCCACTAGTGA 60.027 50.000 24.68 0.00 41.32 3.41
8237 17019 2.360844 TCTCGAGAGAAGCCACTAGTG 58.639 52.381 16.34 16.34 41.32 2.74
8238 17020 2.791347 TCTCGAGAGAAGCCACTAGT 57.209 50.000 12.08 0.00 41.32 2.57
8239 17021 4.442375 TTTTCTCGAGAGAAGCCACTAG 57.558 45.455 15.94 0.00 46.80 2.57
8240 17022 5.450688 GCTATTTTCTCGAGAGAAGCCACTA 60.451 44.000 21.31 9.41 46.80 2.74
8241 17023 3.971245 ATTTTCTCGAGAGAAGCCACT 57.029 42.857 21.31 4.05 46.80 4.00
8242 17024 3.553917 GCTATTTTCTCGAGAGAAGCCAC 59.446 47.826 21.31 9.09 46.80 5.01
8243 17025 3.195610 TGCTATTTTCTCGAGAGAAGCCA 59.804 43.478 24.91 17.91 46.80 4.75
8244 17026 3.553917 GTGCTATTTTCTCGAGAGAAGCC 59.446 47.826 24.91 16.25 46.80 4.35
8245 17027 4.032331 GTGTGCTATTTTCTCGAGAGAAGC 59.968 45.833 21.31 22.21 46.80 3.86
8246 17028 4.264145 CGTGTGCTATTTTCTCGAGAGAAG 59.736 45.833 21.31 15.02 46.80 2.85
8247 17029 4.166523 CGTGTGCTATTTTCTCGAGAGAA 58.833 43.478 19.46 19.46 44.94 2.87
8248 17030 3.427638 CCGTGTGCTATTTTCTCGAGAGA 60.428 47.826 15.94 8.62 39.12 3.10
8249 17031 2.854777 CCGTGTGCTATTTTCTCGAGAG 59.145 50.000 15.94 4.69 0.00 3.20
8250 17032 2.230508 ACCGTGTGCTATTTTCTCGAGA 59.769 45.455 12.08 12.08 0.00 4.04
8251 17033 2.345641 CACCGTGTGCTATTTTCTCGAG 59.654 50.000 5.93 5.93 0.00 4.04
8252 17034 2.333926 CACCGTGTGCTATTTTCTCGA 58.666 47.619 0.00 0.00 0.00 4.04
8253 17035 1.393539 CCACCGTGTGCTATTTTCTCG 59.606 52.381 0.00 0.00 31.34 4.04
8254 17036 1.737793 CCCACCGTGTGCTATTTTCTC 59.262 52.381 0.00 0.00 31.34 2.87
8255 17037 1.073284 ACCCACCGTGTGCTATTTTCT 59.927 47.619 0.00 0.00 31.34 2.52
8256 17038 1.530323 ACCCACCGTGTGCTATTTTC 58.470 50.000 0.00 0.00 31.34 2.29
8257 17039 2.863132 TACCCACCGTGTGCTATTTT 57.137 45.000 0.00 0.00 31.34 1.82
8258 17040 2.815503 GTTTACCCACCGTGTGCTATTT 59.184 45.455 0.00 0.00 31.34 1.40
8259 17041 2.224572 TGTTTACCCACCGTGTGCTATT 60.225 45.455 0.00 0.00 31.34 1.73
8260 17042 1.348366 TGTTTACCCACCGTGTGCTAT 59.652 47.619 0.00 0.00 31.34 2.97
8261 17043 0.757512 TGTTTACCCACCGTGTGCTA 59.242 50.000 0.00 0.00 31.34 3.49
8262 17044 0.107116 TTGTTTACCCACCGTGTGCT 60.107 50.000 0.00 0.00 31.34 4.40
8263 17045 0.739561 TTTGTTTACCCACCGTGTGC 59.260 50.000 0.00 0.00 31.34 4.57
8264 17046 3.719173 AATTTGTTTACCCACCGTGTG 57.281 42.857 0.00 0.00 0.00 3.82
8265 17047 4.463070 AGTAATTTGTTTACCCACCGTGT 58.537 39.130 0.00 0.00 41.01 4.49
8266 17048 6.746745 ATAGTAATTTGTTTACCCACCGTG 57.253 37.500 0.00 0.00 41.01 4.94
8267 17049 6.151480 CCAATAGTAATTTGTTTACCCACCGT 59.849 38.462 0.00 0.00 41.01 4.83
8268 17050 6.404954 CCCAATAGTAATTTGTTTACCCACCG 60.405 42.308 0.00 0.00 41.01 4.94
8269 17051 6.628621 GCCCAATAGTAATTTGTTTACCCACC 60.629 42.308 0.00 0.00 41.01 4.61
8270 17052 6.071278 TGCCCAATAGTAATTTGTTTACCCAC 60.071 38.462 0.00 0.00 41.01 4.61
8271 17053 6.017192 TGCCCAATAGTAATTTGTTTACCCA 58.983 36.000 0.00 0.00 41.01 4.51
8272 17054 6.532988 TGCCCAATAGTAATTTGTTTACCC 57.467 37.500 0.00 0.00 41.01 3.69
8273 17055 8.878769 CAATTGCCCAATAGTAATTTGTTTACC 58.121 33.333 0.00 0.00 41.01 2.85
8274 17056 9.646427 TCAATTGCCCAATAGTAATTTGTTTAC 57.354 29.630 0.00 0.00 40.50 2.01
8278 17060 9.420118 TCTATCAATTGCCCAATAGTAATTTGT 57.580 29.630 0.00 0.00 30.78 2.83
8283 17065 8.413229 GCTTTTCTATCAATTGCCCAATAGTAA 58.587 33.333 0.00 0.89 0.00 2.24
8284 17066 7.559533 TGCTTTTCTATCAATTGCCCAATAGTA 59.440 33.333 0.00 0.00 0.00 1.82
8285 17067 6.380846 TGCTTTTCTATCAATTGCCCAATAGT 59.619 34.615 0.00 0.00 0.00 2.12
8286 17068 6.808829 TGCTTTTCTATCAATTGCCCAATAG 58.191 36.000 0.00 3.24 0.00 1.73
8287 17069 6.788598 TGCTTTTCTATCAATTGCCCAATA 57.211 33.333 0.00 0.00 0.00 1.90
8288 17070 5.680594 TGCTTTTCTATCAATTGCCCAAT 57.319 34.783 0.00 0.00 0.00 3.16
8289 17071 5.480642 TTGCTTTTCTATCAATTGCCCAA 57.519 34.783 0.00 0.00 0.00 4.12
8290 17072 5.480642 TTTGCTTTTCTATCAATTGCCCA 57.519 34.783 0.00 0.00 0.00 5.36
8291 17073 8.667076 ATTATTTGCTTTTCTATCAATTGCCC 57.333 30.769 0.00 0.00 0.00 5.36
8292 17074 9.316730 TGATTATTTGCTTTTCTATCAATTGCC 57.683 29.630 0.00 0.00 0.00 4.52
8297 17079 9.720667 CGTCATGATTATTTGCTTTTCTATCAA 57.279 29.630 0.00 0.00 0.00 2.57
8298 17080 9.108284 TCGTCATGATTATTTGCTTTTCTATCA 57.892 29.630 0.00 0.00 0.00 2.15
8303 17085 9.334693 GGATATCGTCATGATTATTTGCTTTTC 57.665 33.333 0.00 0.00 38.57 2.29
8304 17086 8.849168 TGGATATCGTCATGATTATTTGCTTTT 58.151 29.630 0.00 0.00 38.57 2.27
8305 17087 8.394971 TGGATATCGTCATGATTATTTGCTTT 57.605 30.769 0.00 0.00 38.57 3.51
8306 17088 7.984422 TGGATATCGTCATGATTATTTGCTT 57.016 32.000 0.00 0.00 38.57 3.91
8307 17089 7.984422 TTGGATATCGTCATGATTATTTGCT 57.016 32.000 0.00 0.00 38.57 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.