Multiple sequence alignment - TraesCS2D01G235200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G235200 chr2D 100.000 3763 0 0 2769 6531 220672478 220676240 0.000000e+00 6950.0
1 TraesCS2D01G235200 chr2D 100.000 1559 0 0 1 1559 220669710 220671268 0.000000e+00 2880.0
2 TraesCS2D01G235200 chr2D 100.000 577 0 0 1926 2502 220671635 220672211 0.000000e+00 1066.0
3 TraesCS2D01G235200 chr2D 78.860 544 75 21 3378 3888 587365419 587365955 1.360000e-86 331.0
4 TraesCS2D01G235200 chr2D 77.491 271 61 0 1126 1396 523028494 523028764 5.240000e-36 163.0
5 TraesCS2D01G235200 chr2D 91.139 79 5 2 2855 2933 463882507 463882431 8.960000e-19 106.0
6 TraesCS2D01G235200 chr2D 76.966 178 29 9 3775 3944 471705352 471705179 2.510000e-14 91.6
7 TraesCS2D01G235200 chr2D 88.462 52 6 0 124 175 644400892 644400841 5.470000e-06 63.9
8 TraesCS2D01G235200 chr2B 88.043 1564 119 29 1 1559 290518639 290520139 0.000000e+00 1790.0
9 TraesCS2D01G235200 chr2B 85.100 1302 145 25 2930 4188 290521003 290522298 0.000000e+00 1284.0
10 TraesCS2D01G235200 chr2B 87.710 1131 74 26 4773 5853 290522688 290523803 0.000000e+00 1258.0
11 TraesCS2D01G235200 chr2B 85.619 452 50 8 5848 6297 290527264 290527702 1.660000e-125 460.0
12 TraesCS2D01G235200 chr2B 81.592 603 66 26 1926 2497 290520242 290520830 2.150000e-124 457.0
13 TraesCS2D01G235200 chr2B 85.450 433 35 15 4269 4694 290522296 290522707 6.050000e-115 425.0
14 TraesCS2D01G235200 chr2B 76.277 274 59 5 1126 1396 616934595 616934865 2.460000e-29 141.0
15 TraesCS2D01G235200 chr2B 89.623 106 11 0 6426 6531 280501881 280501986 1.140000e-27 135.0
16 TraesCS2D01G235200 chr2B 97.872 47 1 0 2814 2860 290520959 290521005 1.510000e-11 82.4
17 TraesCS2D01G235200 chr2B 97.222 36 1 0 127 162 320750716 320750681 1.970000e-05 62.1
18 TraesCS2D01G235200 chr2B 96.875 32 1 0 136 167 518511788 518511757 3.000000e-03 54.7
19 TraesCS2D01G235200 chr2A 91.782 1156 49 17 4773 5885 239386049 239387201 0.000000e+00 1567.0
20 TraesCS2D01G235200 chr2A 92.040 1093 59 9 465 1556 239380996 239382061 0.000000e+00 1511.0
21 TraesCS2D01G235200 chr2A 90.253 1067 103 1 3272 4338 239383535 239384600 0.000000e+00 1393.0
22 TraesCS2D01G235200 chr2A 91.074 661 56 3 5873 6531 239402933 239403592 0.000000e+00 891.0
23 TraesCS2D01G235200 chr2A 91.463 574 44 5 1926 2497 239382178 239382748 0.000000e+00 784.0
24 TraesCS2D01G235200 chr2A 89.263 475 45 6 5 475 239375892 239376364 2.030000e-164 590.0
25 TraesCS2D01G235200 chr2A 92.533 375 19 5 4324 4691 239385693 239386065 4.480000e-146 529.0
26 TraesCS2D01G235200 chr2A 93.870 261 12 4 2930 3189 239383141 239383398 2.210000e-104 390.0
27 TraesCS2D01G235200 chr2A 77.007 274 57 5 1126 1396 668242747 668243017 1.130000e-32 152.0
28 TraesCS2D01G235200 chr2A 95.455 88 3 1 2774 2860 239383056 239383143 8.830000e-29 139.0
29 TraesCS2D01G235200 chr2A 93.421 76 3 1 2859 2932 89486318 89486243 1.930000e-20 111.0
30 TraesCS2D01G235200 chr2A 89.535 86 8 1 2848 2932 45093782 45093867 2.490000e-19 108.0
31 TraesCS2D01G235200 chr4D 74.439 802 126 53 3272 4021 372988202 372987428 8.340000e-69 272.0
32 TraesCS2D01G235200 chr4D 89.623 106 11 0 6426 6531 151918547 151918442 1.140000e-27 135.0
33 TraesCS2D01G235200 chr7A 79.177 389 47 20 4888 5259 205112901 205112530 8.460000e-59 239.0
34 TraesCS2D01G235200 chr7A 78.055 401 56 22 4888 5262 546511436 546511042 2.370000e-54 224.0
35 TraesCS2D01G235200 chr7A 77.461 386 55 22 4888 5255 652359915 652359544 1.110000e-47 202.0
36 TraesCS2D01G235200 chr7A 79.259 135 20 6 4078 4207 516073442 516073311 3.240000e-13 87.9
37 TraesCS2D01G235200 chr7A 100.000 39 0 0 129 167 554397870 554397832 9.080000e-09 73.1
38 TraesCS2D01G235200 chr6D 78.316 392 67 14 4883 5259 408686582 408686970 3.040000e-58 237.0
39 TraesCS2D01G235200 chr6D 77.178 241 53 2 1157 1396 320228191 320228430 8.830000e-29 139.0
40 TraesCS2D01G235200 chr6D 85.714 56 8 0 3972 4027 10457444 10457389 7.070000e-05 60.2
41 TraesCS2D01G235200 chr6D 85.000 60 8 1 4090 4149 158788632 158788574 7.070000e-05 60.2
42 TraesCS2D01G235200 chr4B 78.164 403 53 19 4889 5264 357961517 357961123 2.370000e-54 224.0
43 TraesCS2D01G235200 chr5B 79.288 309 59 4 3702 4006 597330593 597330900 1.850000e-50 211.0
44 TraesCS2D01G235200 chr5B 77.866 253 47 7 4075 4323 250229614 250229367 1.470000e-31 148.0
45 TraesCS2D01G235200 chr5B 90.566 106 7 3 6426 6531 671081806 671081704 3.180000e-28 137.0
46 TraesCS2D01G235200 chr1A 77.128 376 70 11 3666 4027 230131957 230131584 3.090000e-48 204.0
47 TraesCS2D01G235200 chr1A 91.667 108 9 0 6424 6531 344749488 344749595 4.080000e-32 150.0
48 TraesCS2D01G235200 chr1A 91.358 81 4 3 2856 2933 489569186 489569106 2.490000e-19 108.0
49 TraesCS2D01G235200 chr1A 89.831 59 4 2 122 179 453524959 453524902 2.530000e-09 75.0
50 TraesCS2D01G235200 chr1A 75.887 141 26 7 3920 4056 510824209 510824345 1.520000e-06 65.8
51 TraesCS2D01G235200 chr7D 77.261 387 56 17 4888 5259 195264528 195264159 1.440000e-46 198.0
52 TraesCS2D01G235200 chr7D 76.981 265 54 7 4063 4323 106223448 106223709 1.900000e-30 145.0
53 TraesCS2D01G235200 chr7D 93.421 76 5 0 2859 2934 531439018 531438943 5.350000e-21 113.0
54 TraesCS2D01G235200 chr1B 78.405 301 60 5 3712 4009 20695806 20695508 2.400000e-44 191.0
55 TraesCS2D01G235200 chr3B 80.147 272 35 12 5004 5259 430528882 430528614 1.120000e-42 185.0
56 TraesCS2D01G235200 chr3B 78.388 273 35 17 5004 5254 783089127 783088857 8.770000e-34 156.0
57 TraesCS2D01G235200 chr5D 80.508 236 44 1 3703 3936 555898403 555898638 5.200000e-41 180.0
58 TraesCS2D01G235200 chr5D 90.566 106 10 0 6426 6531 272117519 272117624 2.460000e-29 141.0
59 TraesCS2D01G235200 chr5D 89.720 107 11 0 6425 6531 42580647 42580541 3.180000e-28 137.0
60 TraesCS2D01G235200 chr5D 94.667 75 4 0 2859 2933 286953745 286953671 4.140000e-22 117.0
61 TraesCS2D01G235200 chr5D 93.421 76 2 3 2859 2932 289038432 289038506 6.920000e-20 110.0
62 TraesCS2D01G235200 chr3A 81.604 212 24 10 4894 5093 717909425 717909217 1.880000e-35 161.0
63 TraesCS2D01G235200 chr3D 88.496 113 11 2 6419 6531 426524424 426524314 1.140000e-27 135.0
64 TraesCS2D01G235200 chr7B 89.720 107 8 3 6426 6531 117062276 117062380 4.110000e-27 134.0
65 TraesCS2D01G235200 chr7B 91.026 78 7 0 2856 2933 156633924 156633847 8.960000e-19 106.0
66 TraesCS2D01G235200 chr1D 93.182 88 5 1 2850 2936 470796206 470796119 1.910000e-25 128.0
67 TraesCS2D01G235200 chr6B 75.934 241 56 2 1157 1396 502484388 502484149 8.890000e-24 122.0
68 TraesCS2D01G235200 chr6B 91.837 49 2 1 130 176 76626290 76626242 4.230000e-07 67.6
69 TraesCS2D01G235200 chr6B 76.577 111 24 2 3918 4027 237155181 237155290 7.070000e-05 60.2
70 TraesCS2D01G235200 chr6A 75.934 241 56 2 1157 1396 457685953 457686192 8.890000e-24 122.0
71 TraesCS2D01G235200 chr6A 81.188 101 14 3 3927 4024 28927323 28927421 7.020000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G235200 chr2D 220669710 220676240 6530 False 3632.000000 6950 100.000000 1 6531 3 chr2D.!!$F3 6530
1 TraesCS2D01G235200 chr2D 587365419 587365955 536 False 331.000000 331 78.860000 3378 3888 1 chr2D.!!$F2 510
2 TraesCS2D01G235200 chr2B 290518639 290527702 9063 False 822.342857 1790 87.340857 1 6297 7 chr2B.!!$F3 6296
3 TraesCS2D01G235200 chr2A 239380996 239387201 6205 False 901.857143 1567 92.485143 465 5885 7 chr2A.!!$F5 5420
4 TraesCS2D01G235200 chr2A 239402933 239403592 659 False 891.000000 891 91.074000 5873 6531 1 chr2A.!!$F3 658
5 TraesCS2D01G235200 chr4D 372987428 372988202 774 True 272.000000 272 74.439000 3272 4021 1 chr4D.!!$R2 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 997 0.323629 TGTAGGGGGCTTTGAAGACG 59.676 55.000 0.00 0.00 33.77 4.18 F
1156 1167 1.002868 ATCTGGTCTGGCTGTGCAC 60.003 57.895 10.75 10.75 0.00 4.57 F
2788 2863 1.134788 GTGGCTAAAAGGCTCGCTAGA 60.135 52.381 0.00 0.00 41.96 2.43 F
4241 4530 0.107848 GGTGTAGCGGCAATAGTGGT 60.108 55.000 1.45 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2927 3003 0.105607 ACCCCCGATCCCTTCTACTC 60.106 60.0 0.0 0.0 0.00 2.59 R
2928 3004 0.342313 AACCCCCGATCCCTTCTACT 59.658 55.0 0.0 0.0 0.00 2.57 R
4741 6139 0.038890 GCTTTGGGGAGCCTCTTTCT 59.961 55.0 0.0 0.0 36.66 2.52 R
6030 10950 0.821711 TTGACACAAAGAAGGCGGGG 60.822 55.0 0.0 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.838486 CTCTGAGGTCGACGGCGC 62.838 72.222 5.31 0.00 37.46 6.53
71 72 2.933287 AACACCCTGGCCCGATCA 60.933 61.111 0.00 0.00 0.00 2.92
140 143 2.066999 CCCCAGGAGGCAGGTACTC 61.067 68.421 0.00 0.00 34.60 2.59
242 245 3.181456 CCTCACTCTCTTTCATCCCCATC 60.181 52.174 0.00 0.00 0.00 3.51
249 252 2.159156 TCTTTCATCCCCATCGTGTACG 60.159 50.000 0.00 0.00 41.45 3.67
265 268 1.884579 GTACGCCGATGGATCCTTCTA 59.115 52.381 21.73 7.84 0.00 2.10
292 295 1.618837 CTGCGCCTCCTAAGCCTATTA 59.381 52.381 4.18 0.00 0.00 0.98
298 301 3.196039 GCCTCCTAAGCCTATTACCTAGC 59.804 52.174 0.00 0.00 0.00 3.42
302 305 6.548251 CCTCCTAAGCCTATTACCTAGCTATC 59.452 46.154 0.00 0.00 0.00 2.08
312 315 8.861086 CCTATTACCTAGCTATCTTTCTTGTCA 58.139 37.037 0.00 0.00 0.00 3.58
315 318 5.423886 ACCTAGCTATCTTTCTTGTCAAGC 58.576 41.667 7.78 0.00 0.00 4.01
317 320 5.752955 CCTAGCTATCTTTCTTGTCAAGCTC 59.247 44.000 7.78 0.00 39.42 4.09
325 328 4.944619 TTCTTGTCAAGCTCTTCTCTGA 57.055 40.909 7.78 0.00 0.00 3.27
339 342 2.735151 TCTCTGATACCTCCGCAAGAA 58.265 47.619 0.00 0.00 43.02 2.52
341 344 3.131223 TCTCTGATACCTCCGCAAGAAAG 59.869 47.826 0.00 0.00 43.02 2.62
342 345 3.096852 TCTGATACCTCCGCAAGAAAGA 58.903 45.455 0.00 0.00 43.02 2.52
343 346 3.513912 TCTGATACCTCCGCAAGAAAGAA 59.486 43.478 0.00 0.00 43.02 2.52
344 347 3.861840 TGATACCTCCGCAAGAAAGAAG 58.138 45.455 0.00 0.00 43.02 2.85
345 348 3.513912 TGATACCTCCGCAAGAAAGAAGA 59.486 43.478 0.00 0.00 43.02 2.87
346 349 2.464157 ACCTCCGCAAGAAAGAAGAG 57.536 50.000 0.00 0.00 43.02 2.85
347 350 1.971357 ACCTCCGCAAGAAAGAAGAGA 59.029 47.619 0.00 0.00 43.02 3.10
348 351 2.569404 ACCTCCGCAAGAAAGAAGAGAT 59.431 45.455 0.00 0.00 43.02 2.75
349 352 3.194062 CCTCCGCAAGAAAGAAGAGATC 58.806 50.000 0.00 0.00 43.02 2.75
358 361 9.254133 CGCAAGAAAGAAGAGATCTGATTTATA 57.746 33.333 0.00 0.00 37.95 0.98
418 421 5.791336 ATTTCCGTATGACTATCTCTGCA 57.209 39.130 0.00 0.00 0.00 4.41
440 444 5.447010 GCAGAGAGATTATAATGCGGAATGC 60.447 44.000 1.78 3.03 46.70 3.56
549 553 7.283329 AGACACCTAAAGAAAGAGAACAATGT 58.717 34.615 0.00 0.00 0.00 2.71
638 642 7.570161 AGAATTTACTTAAACGTTGAACCTCG 58.430 34.615 0.00 0.00 0.00 4.63
669 673 9.878667 AAGAAACAATATCATGATTTGCATTGA 57.121 25.926 25.38 4.81 34.15 2.57
808 812 3.372730 TGCGCATGGCCTCAAACC 61.373 61.111 5.66 0.00 42.61 3.27
969 974 0.606944 TCCATTTCCGGTTTCCCACG 60.607 55.000 0.00 0.00 0.00 4.94
971 976 0.955905 CATTTCCGGTTTCCCACGTT 59.044 50.000 0.00 0.00 0.00 3.99
992 997 0.323629 TGTAGGGGGCTTTGAAGACG 59.676 55.000 0.00 0.00 33.77 4.18
1005 1010 3.791973 TGAAGACGCACAAAAATGGTT 57.208 38.095 0.00 0.00 0.00 3.67
1007 1012 4.602995 TGAAGACGCACAAAAATGGTTAC 58.397 39.130 0.00 0.00 0.00 2.50
1012 1017 3.634910 ACGCACAAAAATGGTTACCTCTT 59.365 39.130 2.07 0.00 0.00 2.85
1028 1033 9.590828 GGTTACCTCTTTATCTATCTACCTCTT 57.409 37.037 0.00 0.00 0.00 2.85
1032 1037 8.955794 ACCTCTTTATCTATCTACCTCTTCTCT 58.044 37.037 0.00 0.00 0.00 3.10
1156 1167 1.002868 ATCTGGTCTGGCTGTGCAC 60.003 57.895 10.75 10.75 0.00 4.57
1159 1170 3.044305 GGTCTGGCTGTGCACGAC 61.044 66.667 13.13 12.42 0.00 4.34
1414 1425 3.905591 GGTATGGGCCTACTTATACCACA 59.094 47.826 19.83 1.84 42.82 4.17
1453 1465 3.833650 TGATGTGTTTTCTCCCATTGCAT 59.166 39.130 0.00 0.00 0.00 3.96
1485 1497 5.520376 AGTCCATCAACTTCTGTTTTTGG 57.480 39.130 0.00 0.00 37.15 3.28
1952 1964 1.150536 GCCAAGTGACTCAACCCCA 59.849 57.895 0.00 0.00 0.00 4.96
1978 1990 3.955650 ACTCCGTGTGTGTAGCTTTAT 57.044 42.857 0.00 0.00 0.00 1.40
1996 2008 5.682862 GCTTTATTCGGCACTACAATCATTG 59.317 40.000 0.00 0.00 0.00 2.82
2003 2015 4.666237 GGCACTACAATCATTGCTTCTTC 58.334 43.478 0.00 0.00 35.24 2.87
2004 2016 4.156556 GGCACTACAATCATTGCTTCTTCA 59.843 41.667 0.00 0.00 35.24 3.02
2006 2018 6.038603 GGCACTACAATCATTGCTTCTTCATA 59.961 38.462 0.00 0.00 35.24 2.15
2008 2020 7.642978 GCACTACAATCATTGCTTCTTCATAAG 59.357 37.037 0.00 0.00 32.00 1.73
2009 2021 8.671921 CACTACAATCATTGCTTCTTCATAAGT 58.328 33.333 0.00 0.00 0.00 2.24
2137 2179 7.882179 TGCTTCTTCCTCTTTATGTAAAAACC 58.118 34.615 0.00 0.00 0.00 3.27
2197 2241 3.581332 AGAAATTCTCACAGTTCCGGGTA 59.419 43.478 0.00 0.00 0.00 3.69
2340 2384 6.920569 ATGTAAGTAAAGGCAGGATAAACG 57.079 37.500 0.00 0.00 0.00 3.60
2349 2393 2.201732 GCAGGATAAACGAATCGCTGA 58.798 47.619 1.15 0.00 31.30 4.26
2350 2394 2.607635 GCAGGATAAACGAATCGCTGAA 59.392 45.455 1.15 0.00 31.30 3.02
2381 2425 5.130145 TCCCCTTCAAGAAAATGCTGAAAAA 59.870 36.000 0.00 0.00 0.00 1.94
2395 2439 6.463995 TGCTGAAAAATTTCTACAACCACT 57.536 33.333 7.36 0.00 38.02 4.00
2431 2475 9.784531 CATATTAGTCATTACCAATCAAGAGGT 57.215 33.333 0.00 0.00 41.89 3.85
2452 2496 3.067320 GTCCTTTGATATTGCAAGAGGCC 59.933 47.826 4.94 0.00 43.89 5.19
2465 2509 2.429610 CAAGAGGCCTTTGGATCAATGG 59.570 50.000 6.77 7.84 40.31 3.16
2487 2531 6.686630 TGGCACTACAAAGTTTTTATGGATG 58.313 36.000 0.00 0.00 31.97 3.51
2497 2541 4.217550 AGTTTTTATGGATGGTTGTCGGTG 59.782 41.667 0.00 0.00 0.00 4.94
2788 2863 1.134788 GTGGCTAAAAGGCTCGCTAGA 60.135 52.381 0.00 0.00 41.96 2.43
2802 2878 5.105310 GGCTCGCTAGATATTAATCCTTCCA 60.105 44.000 0.00 0.00 31.98 3.53
2860 2936 6.830114 GAGCTAATCCACACTAACATGTAC 57.170 41.667 0.00 0.00 0.00 2.90
2861 2937 6.546428 AGCTAATCCACACTAACATGTACT 57.454 37.500 0.00 0.00 0.00 2.73
2862 2938 6.574350 AGCTAATCCACACTAACATGTACTC 58.426 40.000 0.00 0.00 0.00 2.59
2863 2939 5.753921 GCTAATCCACACTAACATGTACTCC 59.246 44.000 0.00 0.00 0.00 3.85
2864 2940 4.755266 ATCCACACTAACATGTACTCCC 57.245 45.455 0.00 0.00 0.00 4.30
2865 2941 3.786553 TCCACACTAACATGTACTCCCT 58.213 45.455 0.00 0.00 0.00 4.20
2866 2942 4.164981 TCCACACTAACATGTACTCCCTT 58.835 43.478 0.00 0.00 0.00 3.95
2867 2943 4.222145 TCCACACTAACATGTACTCCCTTC 59.778 45.833 0.00 0.00 0.00 3.46
2868 2944 4.174009 CACACTAACATGTACTCCCTTCG 58.826 47.826 0.00 0.00 0.00 3.79
2869 2945 3.830755 ACACTAACATGTACTCCCTTCGT 59.169 43.478 0.00 0.00 0.00 3.85
2870 2946 4.282703 ACACTAACATGTACTCCCTTCGTT 59.717 41.667 0.00 0.00 0.00 3.85
2871 2947 4.863131 CACTAACATGTACTCCCTTCGTTC 59.137 45.833 0.00 0.00 0.00 3.95
2872 2948 3.329929 AACATGTACTCCCTTCGTTCC 57.670 47.619 0.00 0.00 0.00 3.62
2873 2949 2.253610 ACATGTACTCCCTTCGTTCCA 58.746 47.619 0.00 0.00 0.00 3.53
2874 2950 2.635915 ACATGTACTCCCTTCGTTCCAA 59.364 45.455 0.00 0.00 0.00 3.53
2875 2951 3.071892 ACATGTACTCCCTTCGTTCCAAA 59.928 43.478 0.00 0.00 0.00 3.28
2876 2952 3.842007 TGTACTCCCTTCGTTCCAAAA 57.158 42.857 0.00 0.00 0.00 2.44
2877 2953 4.360951 TGTACTCCCTTCGTTCCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
2878 2954 5.486735 TGTACTCCCTTCGTTCCAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
2879 2955 5.484715 TGTACTCCCTTCGTTCCAAAATAG 58.515 41.667 0.00 0.00 0.00 1.73
2880 2956 4.903045 ACTCCCTTCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2881 2957 5.437191 ACTCCCTTCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2882 2958 5.186198 ACTCCCTTCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2883 2959 5.045869 ACTCCCTTCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2884 2960 5.183228 TCCCTTCGTTCCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2885 2961 4.335594 CCCTTCGTTCCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
2886 2962 4.335594 CCTTCGTTCCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
2887 2963 4.561500 TCGTTCCAAAATAGATGACCCA 57.438 40.909 0.00 0.00 0.00 4.51
2888 2964 4.258543 TCGTTCCAAAATAGATGACCCAC 58.741 43.478 0.00 0.00 0.00 4.61
2889 2965 4.019681 TCGTTCCAAAATAGATGACCCACT 60.020 41.667 0.00 0.00 0.00 4.00
2890 2966 4.700213 CGTTCCAAAATAGATGACCCACTT 59.300 41.667 0.00 0.00 0.00 3.16
2891 2967 5.183140 CGTTCCAAAATAGATGACCCACTTT 59.817 40.000 0.00 0.00 0.00 2.66
2892 2968 6.373216 CGTTCCAAAATAGATGACCCACTTTA 59.627 38.462 0.00 0.00 0.00 1.85
2893 2969 7.414098 CGTTCCAAAATAGATGACCCACTTTAG 60.414 40.741 0.00 0.00 0.00 1.85
2894 2970 7.027874 TCCAAAATAGATGACCCACTTTAGT 57.972 36.000 0.00 0.00 0.00 2.24
2895 2971 8.153221 TCCAAAATAGATGACCCACTTTAGTA 57.847 34.615 0.00 0.00 0.00 1.82
2896 2972 8.044908 TCCAAAATAGATGACCCACTTTAGTAC 58.955 37.037 0.00 0.00 0.00 2.73
2897 2973 7.827236 CCAAAATAGATGACCCACTTTAGTACA 59.173 37.037 0.00 0.00 0.00 2.90
2898 2974 9.226606 CAAAATAGATGACCCACTTTAGTACAA 57.773 33.333 0.00 0.00 0.00 2.41
2899 2975 9.802039 AAAATAGATGACCCACTTTAGTACAAA 57.198 29.630 0.00 0.00 0.00 2.83
2900 2976 9.449719 AAATAGATGACCCACTTTAGTACAAAG 57.550 33.333 13.08 13.08 0.00 2.77
2901 2977 6.435292 AGATGACCCACTTTAGTACAAAGT 57.565 37.500 14.04 14.04 40.80 2.66
2902 2978 6.838382 AGATGACCCACTTTAGTACAAAGTT 58.162 36.000 16.06 6.88 38.32 2.66
2903 2979 6.710744 AGATGACCCACTTTAGTACAAAGTTG 59.289 38.462 16.06 13.70 38.32 3.16
2904 2980 5.991861 TGACCCACTTTAGTACAAAGTTGA 58.008 37.500 16.06 0.95 38.32 3.18
2905 2981 6.053005 TGACCCACTTTAGTACAAAGTTGAG 58.947 40.000 16.06 11.83 38.32 3.02
2906 2982 5.997843 ACCCACTTTAGTACAAAGTTGAGT 58.002 37.500 16.06 12.25 38.32 3.41
2907 2983 6.053650 ACCCACTTTAGTACAAAGTTGAGTC 58.946 40.000 16.06 0.00 38.32 3.36
2908 2984 6.053005 CCCACTTTAGTACAAAGTTGAGTCA 58.947 40.000 16.06 0.00 38.32 3.41
2909 2985 6.710744 CCCACTTTAGTACAAAGTTGAGTCAT 59.289 38.462 16.06 0.00 38.32 3.06
2910 2986 7.095187 CCCACTTTAGTACAAAGTTGAGTCATC 60.095 40.741 16.06 0.00 38.32 2.92
2911 2987 7.657761 CCACTTTAGTACAAAGTTGAGTCATCT 59.342 37.037 16.06 0.00 38.32 2.90
2912 2988 9.692749 CACTTTAGTACAAAGTTGAGTCATCTA 57.307 33.333 16.06 0.00 38.32 1.98
2918 2994 9.778741 AGTACAAAGTTGAGTCATCTATTTTGA 57.221 29.630 15.99 3.46 38.91 2.69
2921 2997 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
2922 2998 9.734620 CAAAGTTGAGTCATCTATTTTGAAACA 57.265 29.630 4.14 0.00 38.91 2.83
2923 2999 9.956720 AAAGTTGAGTCATCTATTTTGAAACAG 57.043 29.630 4.14 0.00 0.00 3.16
2924 3000 8.908786 AGTTGAGTCATCTATTTTGAAACAGA 57.091 30.769 1.70 0.00 0.00 3.41
2925 3001 8.997323 AGTTGAGTCATCTATTTTGAAACAGAG 58.003 33.333 1.70 0.00 0.00 3.35
2926 3002 7.912056 TGAGTCATCTATTTTGAAACAGAGG 57.088 36.000 0.00 0.00 0.00 3.69
2927 3003 6.881065 TGAGTCATCTATTTTGAAACAGAGGG 59.119 38.462 0.00 0.00 0.00 4.30
2928 3004 7.020827 AGTCATCTATTTTGAAACAGAGGGA 57.979 36.000 0.00 0.00 0.00 4.20
2944 3020 0.832559 GGGAGTAGAAGGGATCGGGG 60.833 65.000 0.00 0.00 0.00 5.73
3160 3237 1.308877 AAATCATAGGGCAGGGGTGT 58.691 50.000 0.00 0.00 0.00 4.16
3191 3268 3.034635 GAGCTGATAGAAGGTGAAGGGA 58.965 50.000 0.00 0.00 0.00 4.20
3333 3464 3.862991 GCCCCGAGGAAGGTAGCC 61.863 72.222 0.00 0.00 33.47 3.93
3383 3523 4.796231 CTCGGCGCGGTAGCTTGT 62.796 66.667 15.06 0.00 42.32 3.16
3611 3770 4.789075 CCATGCTGTGCGCTTGCC 62.789 66.667 9.73 0.00 41.16 4.52
3659 3818 0.110678 AGCGGATCTGTCCTCGGATA 59.889 55.000 2.89 0.00 42.73 2.59
3705 3883 1.945394 GAGCCTCGACTACGGTAATGA 59.055 52.381 0.00 0.00 40.21 2.57
3729 3917 2.637595 CGTCTCTTAGCGTCGTTATCC 58.362 52.381 0.00 0.00 0.00 2.59
3735 3923 5.530171 TCTCTTAGCGTCGTTATCCTATTGT 59.470 40.000 0.00 0.00 0.00 2.71
3743 3931 5.564063 CGTCGTTATCCTATTGTAGGCATCA 60.564 44.000 0.00 0.00 45.82 3.07
3747 3935 6.311445 CGTTATCCTATTGTAGGCATCATCAC 59.689 42.308 0.00 0.00 45.82 3.06
3749 3937 5.628797 TCCTATTGTAGGCATCATCACAA 57.371 39.130 0.00 0.00 45.82 3.33
3772 3960 0.662374 GTCGTGTCGCTTCTTTCGGA 60.662 55.000 0.00 0.00 0.00 4.55
3819 4009 4.221422 CGGATCGGACCATGGCGT 62.221 66.667 13.04 0.00 0.00 5.68
3889 4079 1.668793 CTCGAGTGCACATGTGGCA 60.669 57.895 26.55 20.67 39.32 4.92
3925 4115 2.024163 CGCATCATCGACGACGGA 59.976 61.111 7.55 0.97 40.21 4.69
3955 4146 0.602638 ATGGCGCAACAGAGTTTCGA 60.603 50.000 10.83 0.00 0.00 3.71
4033 4224 1.335810 GACGTCGATGGTAGTATGGCA 59.664 52.381 9.90 0.00 0.00 4.92
4055 4246 5.064325 GCATAGCGAGATGAATGCATTGATA 59.936 40.000 18.59 4.61 43.30 2.15
4061 4252 6.619446 GCGAGATGAATGCATTGATAACTACC 60.619 42.308 18.59 0.61 34.11 3.18
4067 4258 8.347004 TGAATGCATTGATAACTACCAAAGAA 57.653 30.769 18.59 0.00 0.00 2.52
4071 4277 5.652452 GCATTGATAACTACCAAAGAAGGGT 59.348 40.000 0.00 0.00 42.48 4.34
4081 4287 2.026449 CCAAAGAAGGGTCAGCTGATCT 60.026 50.000 25.67 18.08 0.00 2.75
4111 4317 4.747529 ATGCAGTGCGCGCAGAGA 62.748 61.111 37.44 19.22 46.97 3.10
4188 4477 6.488006 GGCCATCAGAATAGATGTTATGTGTT 59.512 38.462 0.00 0.00 43.00 3.32
4189 4478 7.358066 GCCATCAGAATAGATGTTATGTGTTG 58.642 38.462 0.00 0.00 43.00 3.33
4190 4479 7.227314 GCCATCAGAATAGATGTTATGTGTTGA 59.773 37.037 0.00 0.00 43.00 3.18
4191 4480 9.281371 CCATCAGAATAGATGTTATGTGTTGAT 57.719 33.333 0.00 0.00 43.00 2.57
4194 4483 9.463443 TCAGAATAGATGTTATGTGTTGATACG 57.537 33.333 0.00 0.00 0.00 3.06
4195 4484 8.217115 CAGAATAGATGTTATGTGTTGATACGC 58.783 37.037 0.00 0.00 35.32 4.42
4196 4485 6.690704 ATAGATGTTATGTGTTGATACGCG 57.309 37.500 3.53 3.53 37.60 6.01
4197 4486 3.802139 AGATGTTATGTGTTGATACGCGG 59.198 43.478 12.47 0.00 37.60 6.46
4198 4487 2.962125 TGTTATGTGTTGATACGCGGT 58.038 42.857 12.47 0.00 37.60 5.68
4199 4488 2.668945 TGTTATGTGTTGATACGCGGTG 59.331 45.455 12.47 0.00 37.60 4.94
4200 4489 2.924926 GTTATGTGTTGATACGCGGTGA 59.075 45.455 12.47 0.00 37.60 4.02
4201 4490 1.640428 ATGTGTTGATACGCGGTGAG 58.360 50.000 12.47 0.00 37.60 3.51
4202 4491 0.389296 TGTGTTGATACGCGGTGAGG 60.389 55.000 12.47 0.00 37.60 3.86
4203 4492 1.082117 GTGTTGATACGCGGTGAGGG 61.082 60.000 12.47 0.00 38.93 4.30
4204 4493 2.171725 GTTGATACGCGGTGAGGGC 61.172 63.158 12.47 0.00 36.05 5.19
4205 4494 2.651105 TTGATACGCGGTGAGGGCA 61.651 57.895 12.47 0.00 36.05 5.36
4206 4495 2.585247 GATACGCGGTGAGGGCAC 60.585 66.667 12.47 0.00 44.39 5.01
4207 4496 4.508128 ATACGCGGTGAGGGCACG 62.508 66.667 12.47 0.00 46.09 5.34
4216 4505 2.045926 GAGGGCACGCCATCAGTT 60.046 61.111 17.37 0.00 45.30 3.16
4217 4506 1.675641 GAGGGCACGCCATCAGTTT 60.676 57.895 17.37 0.00 45.30 2.66
4218 4507 1.228552 AGGGCACGCCATCAGTTTT 60.229 52.632 10.83 0.00 37.98 2.43
4219 4508 1.212751 GGGCACGCCATCAGTTTTC 59.787 57.895 10.83 0.00 37.98 2.29
4220 4509 1.244019 GGGCACGCCATCAGTTTTCT 61.244 55.000 10.83 0.00 37.98 2.52
4221 4510 1.448985 GGCACGCCATCAGTTTTCTA 58.551 50.000 2.36 0.00 35.81 2.10
4222 4511 1.398390 GGCACGCCATCAGTTTTCTAG 59.602 52.381 2.36 0.00 35.81 2.43
4223 4512 1.398390 GCACGCCATCAGTTTTCTAGG 59.602 52.381 0.00 0.00 0.00 3.02
4224 4513 2.699954 CACGCCATCAGTTTTCTAGGT 58.300 47.619 0.00 0.00 0.00 3.08
4225 4514 2.416547 CACGCCATCAGTTTTCTAGGTG 59.583 50.000 0.00 0.00 34.47 4.00
4226 4515 2.038557 ACGCCATCAGTTTTCTAGGTGT 59.961 45.455 0.00 0.00 35.75 4.16
4227 4516 3.259876 ACGCCATCAGTTTTCTAGGTGTA 59.740 43.478 0.00 0.00 37.43 2.90
4228 4517 3.865745 CGCCATCAGTTTTCTAGGTGTAG 59.134 47.826 0.00 0.00 0.00 2.74
4229 4518 3.623510 GCCATCAGTTTTCTAGGTGTAGC 59.376 47.826 0.00 0.00 0.00 3.58
4230 4519 3.865745 CCATCAGTTTTCTAGGTGTAGCG 59.134 47.826 0.00 0.00 0.00 4.26
4231 4520 3.587797 TCAGTTTTCTAGGTGTAGCGG 57.412 47.619 0.00 0.00 0.00 5.52
4232 4521 2.000447 CAGTTTTCTAGGTGTAGCGGC 59.000 52.381 0.00 0.00 0.00 6.53
4233 4522 1.621814 AGTTTTCTAGGTGTAGCGGCA 59.378 47.619 1.45 0.00 0.00 5.69
4234 4523 2.038033 AGTTTTCTAGGTGTAGCGGCAA 59.962 45.455 1.45 0.00 0.00 4.52
4235 4524 3.007635 GTTTTCTAGGTGTAGCGGCAAT 58.992 45.455 1.45 0.00 0.00 3.56
4236 4525 4.081309 AGTTTTCTAGGTGTAGCGGCAATA 60.081 41.667 1.45 0.00 0.00 1.90
4237 4526 3.728076 TTCTAGGTGTAGCGGCAATAG 57.272 47.619 1.45 0.00 0.00 1.73
4238 4527 2.662866 TCTAGGTGTAGCGGCAATAGT 58.337 47.619 1.45 0.00 0.00 2.12
4239 4528 2.361119 TCTAGGTGTAGCGGCAATAGTG 59.639 50.000 1.45 0.00 0.00 2.74
4240 4529 0.178068 AGGTGTAGCGGCAATAGTGG 59.822 55.000 1.45 0.00 0.00 4.00
4241 4530 0.107848 GGTGTAGCGGCAATAGTGGT 60.108 55.000 1.45 0.00 0.00 4.16
4242 4531 1.287425 GTGTAGCGGCAATAGTGGTC 58.713 55.000 1.45 0.00 0.00 4.02
4243 4532 0.899019 TGTAGCGGCAATAGTGGTCA 59.101 50.000 1.45 0.00 0.00 4.02
4244 4533 1.134818 TGTAGCGGCAATAGTGGTCAG 60.135 52.381 1.45 0.00 0.00 3.51
4245 4534 0.464036 TAGCGGCAATAGTGGTCAGG 59.536 55.000 1.45 0.00 0.00 3.86
4246 4535 1.220749 GCGGCAATAGTGGTCAGGA 59.779 57.895 0.00 0.00 0.00 3.86
4247 4536 0.179045 GCGGCAATAGTGGTCAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
4248 4537 1.586422 CGGCAATAGTGGTCAGGATG 58.414 55.000 0.00 0.00 37.54 3.51
4249 4538 1.811558 CGGCAATAGTGGTCAGGATGG 60.812 57.143 0.00 0.00 36.16 3.51
4250 4539 1.212935 GGCAATAGTGGTCAGGATGGT 59.787 52.381 0.00 0.00 36.16 3.55
4251 4540 2.292267 GCAATAGTGGTCAGGATGGTG 58.708 52.381 0.00 0.00 36.16 4.17
4252 4541 2.923121 CAATAGTGGTCAGGATGGTGG 58.077 52.381 0.00 0.00 36.16 4.61
4253 4542 0.839946 ATAGTGGTCAGGATGGTGGC 59.160 55.000 0.00 0.00 36.16 5.01
4254 4543 0.252696 TAGTGGTCAGGATGGTGGCT 60.253 55.000 0.00 0.00 36.16 4.75
4255 4544 1.136329 AGTGGTCAGGATGGTGGCTT 61.136 55.000 0.00 0.00 36.16 4.35
4256 4545 0.251341 GTGGTCAGGATGGTGGCTTT 60.251 55.000 0.00 0.00 36.16 3.51
4257 4546 0.251297 TGGTCAGGATGGTGGCTTTG 60.251 55.000 0.00 0.00 36.16 2.77
4258 4547 0.967380 GGTCAGGATGGTGGCTTTGG 60.967 60.000 0.00 0.00 36.16 3.28
4259 4548 0.251341 GTCAGGATGGTGGCTTTGGT 60.251 55.000 0.00 0.00 36.16 3.67
4260 4549 0.482446 TCAGGATGGTGGCTTTGGTT 59.518 50.000 0.00 0.00 36.16 3.67
4261 4550 1.133199 TCAGGATGGTGGCTTTGGTTT 60.133 47.619 0.00 0.00 36.16 3.27
4262 4551 1.001181 CAGGATGGTGGCTTTGGTTTG 59.999 52.381 0.00 0.00 0.00 2.93
4263 4552 1.133199 AGGATGGTGGCTTTGGTTTGA 60.133 47.619 0.00 0.00 0.00 2.69
4264 4553 1.901833 GGATGGTGGCTTTGGTTTGAT 59.098 47.619 0.00 0.00 0.00 2.57
4265 4554 2.094026 GGATGGTGGCTTTGGTTTGATC 60.094 50.000 0.00 0.00 0.00 2.92
4266 4555 0.958091 TGGTGGCTTTGGTTTGATCG 59.042 50.000 0.00 0.00 0.00 3.69
4267 4556 1.243902 GGTGGCTTTGGTTTGATCGA 58.756 50.000 0.00 0.00 0.00 3.59
4268 4557 1.818674 GGTGGCTTTGGTTTGATCGAT 59.181 47.619 0.00 0.00 0.00 3.59
4269 4558 2.415893 GGTGGCTTTGGTTTGATCGATG 60.416 50.000 0.54 0.00 0.00 3.84
4270 4559 2.228822 GTGGCTTTGGTTTGATCGATGT 59.771 45.455 0.54 0.00 0.00 3.06
4340 5735 2.895680 GGTCGATGCAGAGGCTGA 59.104 61.111 0.00 0.00 41.91 4.26
4417 5812 4.035102 GGTGTGGTGGGGGAGAGC 62.035 72.222 0.00 0.00 0.00 4.09
4418 5813 4.394712 GTGTGGTGGGGGAGAGCG 62.395 72.222 0.00 0.00 0.00 5.03
4472 5867 5.805994 CAGAATTCTCTGGTAACGGTAGTTC 59.194 44.000 4.57 0.00 44.72 3.01
4499 5894 5.286082 GCACGTACATAAATGCCTTTCAAAG 59.714 40.000 0.00 0.00 31.71 2.77
4551 5947 9.023967 GGTTTATATGTGAATGTTGATTGAAGC 57.976 33.333 0.00 0.00 0.00 3.86
4604 6002 5.242838 TGCCTGATTTTGGTCGAAAAGTTAT 59.757 36.000 0.00 0.00 36.97 1.89
4605 6003 6.431543 TGCCTGATTTTGGTCGAAAAGTTATA 59.568 34.615 0.00 0.00 36.97 0.98
4661 6059 4.851639 AGCACTGTTTTGATCCTCCTAT 57.148 40.909 0.00 0.00 0.00 2.57
4664 6062 5.663106 AGCACTGTTTTGATCCTCCTATAGA 59.337 40.000 0.00 0.00 0.00 1.98
4665 6063 5.755861 GCACTGTTTTGATCCTCCTATAGAC 59.244 44.000 0.00 0.00 0.00 2.59
4666 6064 6.630413 GCACTGTTTTGATCCTCCTATAGACA 60.630 42.308 0.00 0.00 0.00 3.41
4667 6065 6.758886 CACTGTTTTGATCCTCCTATAGACAC 59.241 42.308 0.00 0.00 0.00 3.67
4670 6068 6.440647 TGTTTTGATCCTCCTATAGACACTGT 59.559 38.462 0.00 0.00 0.00 3.55
4671 6069 6.471233 TTTGATCCTCCTATAGACACTGTG 57.529 41.667 6.19 6.19 0.00 3.66
4672 6070 4.474394 TGATCCTCCTATAGACACTGTGG 58.526 47.826 13.09 0.00 0.00 4.17
4675 6073 2.101582 CCTCCTATAGACACTGTGGTGC 59.898 54.545 13.09 1.24 46.57 5.01
4676 6074 2.760650 CTCCTATAGACACTGTGGTGCA 59.239 50.000 13.09 0.00 46.57 4.57
4677 6075 3.374764 TCCTATAGACACTGTGGTGCAT 58.625 45.455 13.09 2.67 46.57 3.96
4678 6076 3.774766 TCCTATAGACACTGTGGTGCATT 59.225 43.478 13.09 0.00 46.57 3.56
4679 6077 4.959839 TCCTATAGACACTGTGGTGCATTA 59.040 41.667 13.09 0.00 46.57 1.90
4680 6078 5.602561 TCCTATAGACACTGTGGTGCATTAT 59.397 40.000 13.09 3.67 46.57 1.28
4681 6079 6.780522 TCCTATAGACACTGTGGTGCATTATA 59.219 38.462 13.09 4.51 46.57 0.98
4682 6080 7.289084 TCCTATAGACACTGTGGTGCATTATAA 59.711 37.037 13.09 0.00 46.57 0.98
4683 6081 8.097038 CCTATAGACACTGTGGTGCATTATAAT 58.903 37.037 13.09 0.00 46.57 1.28
4687 6085 8.383318 AGACACTGTGGTGCATTATAATAATC 57.617 34.615 13.09 0.00 46.57 1.75
4688 6086 7.992608 AGACACTGTGGTGCATTATAATAATCA 59.007 33.333 13.09 0.00 46.57 2.57
4689 6087 8.696043 ACACTGTGGTGCATTATAATAATCAT 57.304 30.769 13.09 0.00 46.57 2.45
4690 6088 9.791801 ACACTGTGGTGCATTATAATAATCATA 57.208 29.630 13.09 0.00 46.57 2.15
4708 6106 5.555190 TCATATTTTCTCGAATACGCACG 57.445 39.130 0.00 0.00 39.58 5.34
4709 6107 5.275494 TCATATTTTCTCGAATACGCACGA 58.725 37.500 0.00 0.00 39.58 4.35
4713 6111 3.307829 CTCGAATACGCACGAGTGT 57.692 52.632 4.12 4.12 46.90 3.55
4714 6112 2.447089 CTCGAATACGCACGAGTGTA 57.553 50.000 8.69 8.69 46.90 2.90
4721 6119 4.823790 ATACGCACGAGTGTATGTATCA 57.176 40.909 16.65 0.00 46.65 2.15
4722 6120 3.710326 ACGCACGAGTGTATGTATCAT 57.290 42.857 0.00 0.00 36.54 2.45
4723 6121 4.041740 ACGCACGAGTGTATGTATCATT 57.958 40.909 0.00 0.00 36.54 2.57
4724 6122 4.042398 ACGCACGAGTGTATGTATCATTC 58.958 43.478 0.00 0.00 36.54 2.67
4725 6123 4.041723 CGCACGAGTGTATGTATCATTCA 58.958 43.478 5.07 0.00 0.00 2.57
4726 6124 4.085568 CGCACGAGTGTATGTATCATTCAC 60.086 45.833 5.07 10.11 0.00 3.18
4727 6125 5.043903 GCACGAGTGTATGTATCATTCACT 58.956 41.667 17.26 17.26 41.18 3.41
4728 6126 6.206498 GCACGAGTGTATGTATCATTCACTA 58.794 40.000 17.26 0.00 39.08 2.74
4729 6127 6.360947 GCACGAGTGTATGTATCATTCACTAG 59.639 42.308 17.26 18.26 39.08 2.57
4730 6128 7.639945 CACGAGTGTATGTATCATTCACTAGA 58.360 38.462 23.74 0.00 39.08 2.43
4731 6129 7.800847 CACGAGTGTATGTATCATTCACTAGAG 59.199 40.741 23.74 17.06 39.08 2.43
4732 6130 7.715686 ACGAGTGTATGTATCATTCACTAGAGA 59.284 37.037 23.74 0.00 39.08 3.10
4733 6131 8.560374 CGAGTGTATGTATCATTCACTAGAGAA 58.440 37.037 17.26 5.02 39.08 2.87
4734 6132 9.891828 GAGTGTATGTATCATTCACTAGAGAAG 57.108 37.037 17.26 1.91 39.08 2.85
4735 6133 9.634021 AGTGTATGTATCATTCACTAGAGAAGA 57.366 33.333 16.26 6.63 37.55 2.87
4740 6138 9.829507 ATGTATCATTCACTAGAGAAGAAAAGG 57.170 33.333 8.59 0.00 0.00 3.11
4741 6139 9.035890 TGTATCATTCACTAGAGAAGAAAAGGA 57.964 33.333 8.59 0.00 0.00 3.36
4742 6140 9.528018 GTATCATTCACTAGAGAAGAAAAGGAG 57.472 37.037 8.59 0.00 0.00 3.69
4743 6141 7.782897 TCATTCACTAGAGAAGAAAAGGAGA 57.217 36.000 8.59 0.00 0.00 3.71
4744 6142 8.195165 TCATTCACTAGAGAAGAAAAGGAGAA 57.805 34.615 8.59 0.00 0.00 2.87
4745 6143 8.651389 TCATTCACTAGAGAAGAAAAGGAGAAA 58.349 33.333 8.59 0.00 0.00 2.52
4746 6144 8.934825 CATTCACTAGAGAAGAAAAGGAGAAAG 58.065 37.037 8.59 0.00 0.00 2.62
4747 6145 7.841282 TCACTAGAGAAGAAAAGGAGAAAGA 57.159 36.000 0.00 0.00 0.00 2.52
4748 6146 7.891561 TCACTAGAGAAGAAAAGGAGAAAGAG 58.108 38.462 0.00 0.00 0.00 2.85
4749 6147 7.039363 TCACTAGAGAAGAAAAGGAGAAAGAGG 60.039 40.741 0.00 0.00 0.00 3.69
4750 6148 4.905429 AGAGAAGAAAAGGAGAAAGAGGC 58.095 43.478 0.00 0.00 0.00 4.70
4751 6149 4.597075 AGAGAAGAAAAGGAGAAAGAGGCT 59.403 41.667 0.00 0.00 0.00 4.58
4752 6150 4.905429 AGAAGAAAAGGAGAAAGAGGCTC 58.095 43.478 6.34 6.34 0.00 4.70
4756 6154 4.153957 GGAGAAAGAGGCTCCCCA 57.846 61.111 11.71 0.00 44.96 4.96
4757 6155 2.387952 GGAGAAAGAGGCTCCCCAA 58.612 57.895 11.71 0.00 44.96 4.12
4758 6156 0.698818 GGAGAAAGAGGCTCCCCAAA 59.301 55.000 11.71 0.00 44.96 3.28
4759 6157 1.340502 GGAGAAAGAGGCTCCCCAAAG 60.341 57.143 11.71 0.00 44.96 2.77
4760 6158 0.038890 AGAAAGAGGCTCCCCAAAGC 59.961 55.000 11.71 0.00 41.73 3.51
4766 6164 4.660938 GCTCCCCAAAGCCACGGT 62.661 66.667 0.00 0.00 36.22 4.83
4767 6165 2.115266 CTCCCCAAAGCCACGGTT 59.885 61.111 0.00 0.00 0.00 4.44
4768 6166 1.377229 CTCCCCAAAGCCACGGTTA 59.623 57.895 0.00 0.00 0.00 2.85
4769 6167 0.958876 CTCCCCAAAGCCACGGTTAC 60.959 60.000 0.00 0.00 0.00 2.50
4770 6168 1.228306 CCCCAAAGCCACGGTTACA 60.228 57.895 0.00 0.00 0.00 2.41
4771 6169 0.824182 CCCCAAAGCCACGGTTACAA 60.824 55.000 0.00 0.00 0.00 2.41
4819 6217 8.788806 ACTAGATTACTTCTGGATACTCGAATG 58.211 37.037 0.00 0.00 36.49 2.67
4822 6220 9.132923 AGATTACTTCTGGATACTCGAATGTAA 57.867 33.333 0.00 0.00 31.79 2.41
4825 6223 6.034591 ACTTCTGGATACTCGAATGTAAACG 58.965 40.000 0.00 0.00 37.61 3.60
4831 6229 5.751990 GGATACTCGAATGTAAACGTCCATT 59.248 40.000 7.52 7.52 34.11 3.16
4841 6239 6.425577 TGTAAACGTCCATTTACCTTATGC 57.574 37.500 5.63 0.00 42.13 3.14
5020 6424 9.891828 GATGTAATGTGTGTGTAAAATTTCAGA 57.108 29.630 0.00 0.00 0.00 3.27
5041 6445 5.745294 CAGAATGAAATACCTTGAATTGCGG 59.255 40.000 0.00 0.00 39.69 5.69
5048 6454 1.080569 CTTGAATTGCGGGCCACAC 60.081 57.895 4.39 0.00 0.00 3.82
5211 6629 7.985634 TTCTGAAATTTCCGAAAACTGAAAG 57.014 32.000 19.07 5.30 31.80 2.62
5247 6665 9.752961 TTAAAGTTTTCAAATTAAGGCCTACAC 57.247 29.630 5.16 0.00 0.00 2.90
5259 6677 1.139095 CCTACACGAAGCTCGGTCC 59.861 63.158 9.75 0.00 45.59 4.46
5278 6719 8.246430 TCGGTCCTCATATTATATTATGGGAC 57.754 38.462 25.33 25.33 42.20 4.46
5284 6726 5.609284 TCATATTATATTATGGGACCGGGGG 59.391 44.000 6.32 0.00 31.71 5.40
5285 6727 3.581518 TTATATTATGGGACCGGGGGA 57.418 47.619 6.32 0.00 0.00 4.81
5286 6728 1.966845 ATATTATGGGACCGGGGGAG 58.033 55.000 6.32 0.00 0.00 4.30
5287 6729 0.569204 TATTATGGGACCGGGGGAGT 59.431 55.000 6.32 0.00 0.00 3.85
5288 6730 0.569204 ATTATGGGACCGGGGGAGTA 59.431 55.000 6.32 0.00 0.00 2.59
5290 6732 0.569204 TATGGGACCGGGGGAGTATT 59.431 55.000 6.32 0.00 0.00 1.89
5365 6807 7.596248 CACTTAAAATGATGGAGTGTTTCCTTG 59.404 37.037 0.00 0.00 46.92 3.61
5558 7000 4.985409 GCACAAGTACATATACTCCAGCTC 59.015 45.833 0.00 0.00 41.00 4.09
5701 7144 7.496920 TGTTCCATATGCTATCTTTCAGTCTTG 59.503 37.037 0.00 0.00 0.00 3.02
5728 7171 0.299895 GCTCTGTCGACATTGATGCG 59.700 55.000 20.40 5.49 0.00 4.73
5809 7261 2.947652 GCATGCATGTATGTGGTCTTCT 59.052 45.455 26.79 0.00 0.00 2.85
5868 10786 3.572682 TCTCAGTACAATCCACACGTCTT 59.427 43.478 0.00 0.00 0.00 3.01
5901 10820 3.320541 TGTGCAATCCCCACTACAAAAAG 59.679 43.478 0.00 0.00 34.38 2.27
5940 10859 9.797642 TTAGAACAGTTGTATATATACTCCCGA 57.202 33.333 20.80 0.82 34.41 5.14
6022 10942 7.595819 ACTTATTCCAAATTCACAGGTTCAA 57.404 32.000 0.00 0.00 0.00 2.69
6030 10950 5.774498 AATTCACAGGTTCAAAAGGAGAC 57.226 39.130 0.00 0.00 0.00 3.36
6044 10964 1.375326 GAGACCCCGCCTTCTTTGT 59.625 57.895 0.00 0.00 0.00 2.83
6051 10971 1.308998 CCGCCTTCTTTGTGTCAACT 58.691 50.000 0.00 0.00 0.00 3.16
6054 10974 3.303791 CCGCCTTCTTTGTGTCAACTAAC 60.304 47.826 0.00 0.00 0.00 2.34
6055 10975 3.560068 CGCCTTCTTTGTGTCAACTAACT 59.440 43.478 0.00 0.00 0.00 2.24
6056 10976 4.318831 CGCCTTCTTTGTGTCAACTAACTC 60.319 45.833 0.00 0.00 0.00 3.01
6057 10977 4.574828 GCCTTCTTTGTGTCAACTAACTCA 59.425 41.667 0.00 0.00 0.00 3.41
6058 10978 5.239525 GCCTTCTTTGTGTCAACTAACTCAT 59.760 40.000 0.00 0.00 0.00 2.90
6059 10979 6.662616 CCTTCTTTGTGTCAACTAACTCATG 58.337 40.000 0.00 0.00 0.00 3.07
6060 10980 6.483307 CCTTCTTTGTGTCAACTAACTCATGA 59.517 38.462 0.00 0.00 0.00 3.07
6061 10981 7.173907 CCTTCTTTGTGTCAACTAACTCATGAT 59.826 37.037 0.00 0.00 0.00 2.45
6062 10982 7.425577 TCTTTGTGTCAACTAACTCATGATG 57.574 36.000 0.00 0.00 0.00 3.07
6063 10983 6.427853 TCTTTGTGTCAACTAACTCATGATGG 59.572 38.462 0.00 0.00 0.00 3.51
6231 11161 0.324943 GAGCACCTAGAAGTTGGCCA 59.675 55.000 0.00 0.00 0.00 5.36
6239 11169 3.515901 CCTAGAAGTTGGCCACTAAGAGT 59.484 47.826 3.88 0.00 32.94 3.24
6268 11198 3.096092 AGCAAAGTCAAACCACTTCCAA 58.904 40.909 0.00 0.00 35.45 3.53
6321 11251 1.092345 GGACCTCATCTGGAAAGCGC 61.092 60.000 0.00 0.00 0.00 5.92
6322 11252 0.391661 GACCTCATCTGGAAAGCGCA 60.392 55.000 11.47 0.00 0.00 6.09
6340 11270 1.679032 GCAGGTGCCCGAGAAAGTTAT 60.679 52.381 0.00 0.00 34.31 1.89
6354 11284 7.715249 CCGAGAAAGTTATAATCTTTGGATGGA 59.285 37.037 14.01 0.00 35.62 3.41
6355 11285 8.768955 CGAGAAAGTTATAATCTTTGGATGGAG 58.231 37.037 14.01 0.00 35.62 3.86
6361 11291 2.725221 ATCTTTGGATGGAGAGTGGC 57.275 50.000 0.00 0.00 0.00 5.01
6372 11302 2.301870 TGGAGAGTGGCGACAAATACTT 59.698 45.455 0.00 0.00 46.06 2.24
6389 11319 5.874895 ATACTTTGGCTACGAAGGAAAAC 57.125 39.130 0.00 0.00 41.57 2.43
6390 11320 3.547746 ACTTTGGCTACGAAGGAAAACA 58.452 40.909 0.00 0.00 41.57 2.83
6412 11342 5.178797 CAAACACAGAAGAACCCTCGATAT 58.821 41.667 0.00 0.00 0.00 1.63
6429 11359 4.126437 CGATATGGATGGCACTTGTGTAA 58.874 43.478 0.00 0.00 0.00 2.41
6453 11383 2.012673 CATCAAGTGCTCCCTTAGTGC 58.987 52.381 0.00 0.00 35.49 4.40
6459 11389 1.541588 GTGCTCCCTTAGTGCTTTTGG 59.458 52.381 0.00 0.00 35.94 3.28
6503 11433 7.378728 GGTTAAAAGACTAATGTGTTTGTGAGC 59.621 37.037 0.00 0.00 39.22 4.26
6524 11454 4.589374 AGCATACACAGGAGTAATAGTCCC 59.411 45.833 10.39 0.00 38.51 4.46
6526 11456 5.773680 GCATACACAGGAGTAATAGTCCCTA 59.226 44.000 10.39 0.00 38.51 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.181010 CCTGATCGGGCCAGGGTG 62.181 72.222 7.89 0.00 45.66 4.61
103 104 4.657824 ACTGGGTGTCGTTCCGCG 62.658 66.667 0.00 0.00 43.01 6.46
108 109 4.265056 GGGGCACTGGGTGTCGTT 62.265 66.667 0.00 0.00 39.27 3.85
113 114 4.039092 CTCCTGGGGCACTGGGTG 62.039 72.222 13.18 2.68 38.62 4.61
132 135 7.792032 TCCTATAAAGAATGTTGGAGTACCTG 58.208 38.462 0.00 0.00 37.04 4.00
201 204 2.835764 AGGGTGGAGTTATCGTTGCTAA 59.164 45.455 0.00 0.00 0.00 3.09
207 210 2.100989 GAGTGAGGGTGGAGTTATCGT 58.899 52.381 0.00 0.00 0.00 3.73
211 214 3.544698 AAGAGAGTGAGGGTGGAGTTA 57.455 47.619 0.00 0.00 0.00 2.24
242 245 1.660575 GGATCCATCGGCGTACACG 60.661 63.158 6.95 0.00 43.27 4.49
249 252 3.118956 CCACTATAGAAGGATCCATCGGC 60.119 52.174 15.82 0.00 0.00 5.54
255 258 2.353208 CGCAGCCACTATAGAAGGATCC 60.353 54.545 16.70 2.48 0.00 3.36
292 295 5.188751 AGCTTGACAAGAAAGATAGCTAGGT 59.811 40.000 19.51 0.00 35.87 3.08
298 301 7.276218 CAGAGAAGAGCTTGACAAGAAAGATAG 59.724 40.741 19.51 0.00 0.00 2.08
302 305 5.295950 TCAGAGAAGAGCTTGACAAGAAAG 58.704 41.667 19.51 0.00 0.00 2.62
312 315 2.955660 CGGAGGTATCAGAGAAGAGCTT 59.044 50.000 0.00 0.00 0.00 3.74
315 318 2.302260 TGCGGAGGTATCAGAGAAGAG 58.698 52.381 0.00 0.00 0.00 2.85
317 320 2.690497 TCTTGCGGAGGTATCAGAGAAG 59.310 50.000 0.00 0.00 0.00 2.85
325 328 3.769844 TCTCTTCTTTCTTGCGGAGGTAT 59.230 43.478 0.00 0.00 0.00 2.73
391 394 9.856488 GCAGAGATAGTCATACGGAAATTTATA 57.144 33.333 0.00 0.00 0.00 0.98
400 403 4.068599 TCTCTGCAGAGATAGTCATACGG 58.931 47.826 36.94 12.76 45.48 4.02
416 419 5.447010 GCATTCCGCATTATAATCTCTCTGC 60.447 44.000 0.00 0.00 41.79 4.26
418 421 4.867047 CGCATTCCGCATTATAATCTCTCT 59.133 41.667 0.00 0.00 42.60 3.10
440 444 3.866883 AGAAACATAAACATTGCCCCG 57.133 42.857 0.00 0.00 0.00 5.73
672 676 5.901276 AGTTATTCCCATCCAAAGCATGATT 59.099 36.000 0.00 0.00 0.00 2.57
730 734 2.770164 ATTCTTGACTTGGTCCCTCG 57.230 50.000 0.00 0.00 0.00 4.63
782 786 3.818787 CCATGCGCACCTCTTGGC 61.819 66.667 14.90 0.00 36.63 4.52
808 812 6.002062 AGGTTGAAAAGAAATTAGCACTCG 57.998 37.500 0.00 0.00 0.00 4.18
838 842 2.913617 AGAAACAAGGGAAGGTAGAGGG 59.086 50.000 0.00 0.00 0.00 4.30
969 974 1.886542 CTTCAAAGCCCCCTACACAAC 59.113 52.381 0.00 0.00 0.00 3.32
971 976 1.073284 GTCTTCAAAGCCCCCTACACA 59.927 52.381 0.00 0.00 0.00 3.72
992 997 7.602753 AGATAAAGAGGTAACCATTTTTGTGC 58.397 34.615 0.00 0.00 37.17 4.57
1007 1012 9.449719 GAGAGAAGAGGTAGATAGATAAAGAGG 57.550 40.741 0.00 0.00 0.00 3.69
1045 1050 9.566432 GAGAGAGAAATAAAGAGAGAGAGAGAT 57.434 37.037 0.00 0.00 0.00 2.75
1156 1167 1.702886 ACTTGATCTTGCAGTCGTCG 58.297 50.000 0.00 0.00 0.00 5.12
1159 1170 2.343843 CGAGAACTTGATCTTGCAGTCG 59.656 50.000 0.00 0.00 0.00 4.18
1299 1310 1.979155 CACTCGTCAGCTGGGAGGA 60.979 63.158 27.91 15.72 32.11 3.71
1414 1425 5.831525 ACACATCACAATCATGAATAGGCAT 59.168 36.000 0.00 0.00 30.82 4.40
1453 1465 3.362706 AGTTGATGGACTAAGGCTACGA 58.637 45.455 0.00 0.00 0.00 3.43
1485 1497 5.172205 GGTAAGTTGATGGACTGAGAAGTC 58.828 45.833 0.00 0.00 38.04 3.01
1518 1530 6.514541 GCCTCTTACAGGGTAAGTTGTTTTTC 60.515 42.308 13.95 0.00 43.70 2.29
1952 1964 5.593679 AGCTACACACACGGAGTTATTAT 57.406 39.130 0.00 0.00 41.61 1.28
1978 1990 2.710377 AGCAATGATTGTAGTGCCGAA 58.290 42.857 7.05 0.00 42.18 4.30
1996 2008 8.406172 TCAAAACAACAAACTTATGAAGAAGC 57.594 30.769 0.00 0.00 0.00 3.86
2047 2059 6.258160 CGATCAAGAAAACTTATGGCGAAAT 58.742 36.000 0.00 0.00 0.00 2.17
2052 2064 4.355543 TGCGATCAAGAAAACTTATGGC 57.644 40.909 0.00 0.00 0.00 4.40
2431 2475 3.053395 AGGCCTCTTGCAATATCAAAGGA 60.053 43.478 0.00 0.00 43.89 3.36
2452 2496 5.047802 ACTTTGTAGTGCCATTGATCCAAAG 60.048 40.000 0.00 0.00 41.83 2.77
2465 2509 6.687604 ACCATCCATAAAAACTTTGTAGTGC 58.312 36.000 0.00 0.00 34.01 4.40
2788 2863 8.533569 AATTGTCGGTTTGGAAGGATTAATAT 57.466 30.769 0.00 0.00 0.00 1.28
2802 2878 6.542370 ACTGCTTAGCATATAATTGTCGGTTT 59.458 34.615 7.58 0.00 38.13 3.27
2857 2933 5.727434 TCTATTTTGGAACGAAGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
2858 2934 6.155565 TCATCTATTTTGGAACGAAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
2859 2935 4.903045 TCTATTTTGGAACGAAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
2860 2936 5.294552 GTCATCTATTTTGGAACGAAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
2861 2937 5.183228 GTCATCTATTTTGGAACGAAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
2862 2938 4.335594 GGTCATCTATTTTGGAACGAAGGG 59.664 45.833 0.00 0.00 0.00 3.95
2863 2939 4.335594 GGGTCATCTATTTTGGAACGAAGG 59.664 45.833 0.00 0.00 0.00 3.46
2864 2940 4.941263 TGGGTCATCTATTTTGGAACGAAG 59.059 41.667 0.00 0.00 0.00 3.79
2865 2941 4.698304 GTGGGTCATCTATTTTGGAACGAA 59.302 41.667 0.00 0.00 0.00 3.85
2866 2942 4.019681 AGTGGGTCATCTATTTTGGAACGA 60.020 41.667 0.00 0.00 0.00 3.85
2867 2943 4.261801 AGTGGGTCATCTATTTTGGAACG 58.738 43.478 0.00 0.00 0.00 3.95
2868 2944 6.590234 AAAGTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2869 2945 7.466804 ACTAAAGTGGGTCATCTATTTTGGAA 58.533 34.615 0.00 0.00 0.00 3.53
2870 2946 7.027874 ACTAAAGTGGGTCATCTATTTTGGA 57.972 36.000 0.00 0.00 0.00 3.53
2871 2947 7.827236 TGTACTAAAGTGGGTCATCTATTTTGG 59.173 37.037 0.00 0.00 0.00 3.28
2872 2948 8.786826 TGTACTAAAGTGGGTCATCTATTTTG 57.213 34.615 0.00 0.00 0.00 2.44
2873 2949 9.802039 TTTGTACTAAAGTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2874 2950 9.449719 CTTTGTACTAAAGTGGGTCATCTATTT 57.550 33.333 0.00 0.00 0.00 1.40
2875 2951 8.603304 ACTTTGTACTAAAGTGGGTCATCTATT 58.397 33.333 17.21 0.00 38.88 1.73
2876 2952 8.147244 ACTTTGTACTAAAGTGGGTCATCTAT 57.853 34.615 17.21 0.00 38.88 1.98
2877 2953 7.549147 ACTTTGTACTAAAGTGGGTCATCTA 57.451 36.000 17.21 0.00 38.88 1.98
2878 2954 6.435292 ACTTTGTACTAAAGTGGGTCATCT 57.565 37.500 17.21 0.00 38.88 2.90
2879 2955 6.708949 TCAACTTTGTACTAAAGTGGGTCATC 59.291 38.462 18.10 0.00 40.10 2.92
2880 2956 6.597562 TCAACTTTGTACTAAAGTGGGTCAT 58.402 36.000 18.10 5.18 40.10 3.06
2881 2957 5.991861 TCAACTTTGTACTAAAGTGGGTCA 58.008 37.500 18.10 3.97 40.10 4.02
2882 2958 6.053650 ACTCAACTTTGTACTAAAGTGGGTC 58.946 40.000 18.10 0.00 40.10 4.46
2883 2959 5.997843 ACTCAACTTTGTACTAAAGTGGGT 58.002 37.500 18.10 15.48 40.10 4.51
2884 2960 6.053005 TGACTCAACTTTGTACTAAAGTGGG 58.947 40.000 18.10 15.07 40.10 4.61
2885 2961 7.657761 AGATGACTCAACTTTGTACTAAAGTGG 59.342 37.037 18.10 16.20 40.10 4.00
2886 2962 8.594881 AGATGACTCAACTTTGTACTAAAGTG 57.405 34.615 18.10 13.82 40.10 3.16
2892 2968 9.778741 TCAAAATAGATGACTCAACTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
2895 2971 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
2896 2972 9.734620 TGTTTCAAAATAGATGACTCAACTTTG 57.265 29.630 0.00 0.00 0.00 2.77
2897 2973 9.956720 CTGTTTCAAAATAGATGACTCAACTTT 57.043 29.630 0.00 0.00 29.67 2.66
2898 2974 9.342308 TCTGTTTCAAAATAGATGACTCAACTT 57.658 29.630 0.00 0.00 32.24 2.66
2899 2975 8.908786 TCTGTTTCAAAATAGATGACTCAACT 57.091 30.769 0.00 0.00 32.24 3.16
2900 2976 8.233190 CCTCTGTTTCAAAATAGATGACTCAAC 58.767 37.037 2.91 0.00 35.92 3.18
2901 2977 7.391554 CCCTCTGTTTCAAAATAGATGACTCAA 59.608 37.037 2.91 0.00 35.92 3.02
2902 2978 6.881065 CCCTCTGTTTCAAAATAGATGACTCA 59.119 38.462 2.91 0.00 35.92 3.41
2903 2979 7.106239 TCCCTCTGTTTCAAAATAGATGACTC 58.894 38.462 2.91 0.00 35.92 3.36
2904 2980 7.020827 TCCCTCTGTTTCAAAATAGATGACT 57.979 36.000 2.91 0.00 35.92 3.41
2905 2981 6.881602 ACTCCCTCTGTTTCAAAATAGATGAC 59.118 38.462 2.91 0.00 35.92 3.06
2906 2982 7.020827 ACTCCCTCTGTTTCAAAATAGATGA 57.979 36.000 2.91 3.20 35.92 2.92
2907 2983 8.260818 TCTACTCCCTCTGTTTCAAAATAGATG 58.739 37.037 2.91 1.27 35.92 2.90
2908 2984 8.380742 TCTACTCCCTCTGTTTCAAAATAGAT 57.619 34.615 2.91 0.00 35.92 1.98
2909 2985 7.792364 TCTACTCCCTCTGTTTCAAAATAGA 57.208 36.000 2.56 2.56 35.32 1.98
2910 2986 7.550906 CCTTCTACTCCCTCTGTTTCAAAATAG 59.449 40.741 0.00 0.00 0.00 1.73
2911 2987 7.394816 CCTTCTACTCCCTCTGTTTCAAAATA 58.605 38.462 0.00 0.00 0.00 1.40
2912 2988 6.241645 CCTTCTACTCCCTCTGTTTCAAAAT 58.758 40.000 0.00 0.00 0.00 1.82
2913 2989 5.456186 CCCTTCTACTCCCTCTGTTTCAAAA 60.456 44.000 0.00 0.00 0.00 2.44
2914 2990 4.041691 CCCTTCTACTCCCTCTGTTTCAAA 59.958 45.833 0.00 0.00 0.00 2.69
2915 2991 3.583086 CCCTTCTACTCCCTCTGTTTCAA 59.417 47.826 0.00 0.00 0.00 2.69
2916 2992 3.173965 CCCTTCTACTCCCTCTGTTTCA 58.826 50.000 0.00 0.00 0.00 2.69
2917 2993 3.442076 TCCCTTCTACTCCCTCTGTTTC 58.558 50.000 0.00 0.00 0.00 2.78
2918 2994 3.562108 TCCCTTCTACTCCCTCTGTTT 57.438 47.619 0.00 0.00 0.00 2.83
2919 2995 3.648739 GATCCCTTCTACTCCCTCTGTT 58.351 50.000 0.00 0.00 0.00 3.16
2920 2996 2.423660 CGATCCCTTCTACTCCCTCTGT 60.424 54.545 0.00 0.00 0.00 3.41
2921 2997 2.235016 CGATCCCTTCTACTCCCTCTG 58.765 57.143 0.00 0.00 0.00 3.35
2922 2998 1.146152 CCGATCCCTTCTACTCCCTCT 59.854 57.143 0.00 0.00 0.00 3.69
2923 2999 1.623163 CCGATCCCTTCTACTCCCTC 58.377 60.000 0.00 0.00 0.00 4.30
2924 3000 0.188834 CCCGATCCCTTCTACTCCCT 59.811 60.000 0.00 0.00 0.00 4.20
2925 3001 0.832559 CCCCGATCCCTTCTACTCCC 60.833 65.000 0.00 0.00 0.00 4.30
2926 3002 0.832559 CCCCCGATCCCTTCTACTCC 60.833 65.000 0.00 0.00 0.00 3.85
2927 3003 0.105607 ACCCCCGATCCCTTCTACTC 60.106 60.000 0.00 0.00 0.00 2.59
2928 3004 0.342313 AACCCCCGATCCCTTCTACT 59.658 55.000 0.00 0.00 0.00 2.57
3151 3228 1.903404 CCTCAAACCACACCCCTGC 60.903 63.158 0.00 0.00 0.00 4.85
3152 3229 1.228552 CCCTCAAACCACACCCCTG 60.229 63.158 0.00 0.00 0.00 4.45
3160 3237 2.832838 TCTATCAGCTCCCTCAAACCA 58.167 47.619 0.00 0.00 0.00 3.67
3191 3268 4.285863 TCTCAAAACATTCCCCAAACACT 58.714 39.130 0.00 0.00 0.00 3.55
3262 3367 1.280142 CGACGAGACTCCGGCTATG 59.720 63.158 0.00 0.00 34.92 2.23
3264 3369 3.200593 GCGACGAGACTCCGGCTA 61.201 66.667 0.00 0.00 34.92 3.93
3299 3430 2.043953 CCAGCCCTACCTTTGCCC 60.044 66.667 0.00 0.00 0.00 5.36
3383 3523 4.501714 CGTTGCCGCCCGTAGCTA 62.502 66.667 0.00 0.00 40.39 3.32
3496 3653 0.474660 ATCCCCAGATCCAGGCTACC 60.475 60.000 0.00 0.00 0.00 3.18
3499 3656 4.328208 GATCCCCAGATCCAGGCT 57.672 61.111 0.00 0.00 42.78 4.58
3659 3818 3.401033 TCACCGATTGTCTTGTCACAT 57.599 42.857 0.00 0.00 0.00 3.21
3705 3883 2.484203 GACGCTAAGAGACGCCGT 59.516 61.111 0.00 0.00 0.00 5.68
3729 3917 6.261603 ACATGTTGTGATGATGCCTACAATAG 59.738 38.462 0.00 0.00 35.72 1.73
3735 3923 3.197265 CGACATGTTGTGATGATGCCTA 58.803 45.455 0.00 0.00 0.00 3.93
3743 3931 0.790207 GCGACACGACATGTTGTGAT 59.210 50.000 40.36 28.07 45.59 3.06
3747 3935 1.139989 AGAAGCGACACGACATGTTG 58.860 50.000 11.78 11.78 43.56 3.33
3772 3960 0.252103 TAGGGTTTCCTCGGAGCAGT 60.252 55.000 0.00 0.00 43.66 4.40
3889 4079 2.409948 GGTAGAAACCATGCTGCTCT 57.590 50.000 0.00 0.00 45.98 4.09
3945 4136 1.272781 GCCTCGTCATCGAAACTCTG 58.727 55.000 0.00 0.00 45.61 3.35
3955 4146 0.179037 CATCCACATGGCCTCGTCAT 60.179 55.000 3.32 0.00 34.44 3.06
3977 4168 2.756691 GCCACCATCCTGCATGCA 60.757 61.111 21.29 21.29 0.00 3.96
4021 4212 2.871453 TCTCGCTATGCCATACTACCA 58.129 47.619 0.00 0.00 0.00 3.25
4033 4224 6.877855 AGTTATCAATGCATTCATCTCGCTAT 59.122 34.615 9.53 0.00 31.27 2.97
4055 4246 2.711547 AGCTGACCCTTCTTTGGTAGTT 59.288 45.455 0.00 0.00 35.85 2.24
4061 4252 3.347077 AGATCAGCTGACCCTTCTTTG 57.653 47.619 20.97 0.00 0.00 2.77
4067 4258 2.428890 CGTTCTAAGATCAGCTGACCCT 59.571 50.000 20.97 16.28 0.00 4.34
4071 4277 2.732282 CGCACGTTCTAAGATCAGCTGA 60.732 50.000 20.79 20.79 0.00 4.26
4081 4287 0.948623 ACTGCATGCGCACGTTCTAA 60.949 50.000 14.90 0.00 45.36 2.10
4111 4317 1.005687 ACCAACCGGTCTAGCTAGACT 59.994 52.381 39.29 25.11 44.71 3.24
4188 4477 3.071837 TGCCCTCACCGCGTATCA 61.072 61.111 4.92 0.00 0.00 2.15
4189 4478 2.585247 GTGCCCTCACCGCGTATC 60.585 66.667 4.92 0.00 37.24 2.24
4190 4479 4.508128 CGTGCCCTCACCGCGTAT 62.508 66.667 4.92 0.00 40.04 3.06
4196 4485 4.408821 TGATGGCGTGCCCTCACC 62.409 66.667 13.88 0.00 40.04 4.02
4197 4486 2.821366 CTGATGGCGTGCCCTCAC 60.821 66.667 13.88 1.59 36.15 3.51
4198 4487 2.410322 AAACTGATGGCGTGCCCTCA 62.410 55.000 16.41 16.41 38.19 3.86
4199 4488 1.244019 AAAACTGATGGCGTGCCCTC 61.244 55.000 8.69 8.85 34.56 4.30
4200 4489 1.228552 AAAACTGATGGCGTGCCCT 60.229 52.632 8.69 0.00 34.56 5.19
4201 4490 1.212751 GAAAACTGATGGCGTGCCC 59.787 57.895 8.69 0.00 34.56 5.36
4202 4491 1.398390 CTAGAAAACTGATGGCGTGCC 59.602 52.381 3.30 3.30 0.00 5.01
4203 4492 1.398390 CCTAGAAAACTGATGGCGTGC 59.602 52.381 0.00 0.00 0.00 5.34
4204 4493 2.416547 CACCTAGAAAACTGATGGCGTG 59.583 50.000 0.00 0.00 0.00 5.34
4205 4494 2.038557 ACACCTAGAAAACTGATGGCGT 59.961 45.455 0.00 0.00 0.00 5.68
4206 4495 2.699954 ACACCTAGAAAACTGATGGCG 58.300 47.619 0.00 0.00 0.00 5.69
4207 4496 3.623510 GCTACACCTAGAAAACTGATGGC 59.376 47.826 0.00 0.00 0.00 4.40
4208 4497 3.865745 CGCTACACCTAGAAAACTGATGG 59.134 47.826 0.00 0.00 0.00 3.51
4209 4498 3.865745 CCGCTACACCTAGAAAACTGATG 59.134 47.826 0.00 0.00 0.00 3.07
4210 4499 3.679083 GCCGCTACACCTAGAAAACTGAT 60.679 47.826 0.00 0.00 0.00 2.90
4211 4500 2.353406 GCCGCTACACCTAGAAAACTGA 60.353 50.000 0.00 0.00 0.00 3.41
4212 4501 2.000447 GCCGCTACACCTAGAAAACTG 59.000 52.381 0.00 0.00 0.00 3.16
4213 4502 1.621814 TGCCGCTACACCTAGAAAACT 59.378 47.619 0.00 0.00 0.00 2.66
4214 4503 2.088950 TGCCGCTACACCTAGAAAAC 57.911 50.000 0.00 0.00 0.00 2.43
4215 4504 2.843401 TTGCCGCTACACCTAGAAAA 57.157 45.000 0.00 0.00 0.00 2.29
4216 4505 3.449737 ACTATTGCCGCTACACCTAGAAA 59.550 43.478 0.00 0.00 0.00 2.52
4217 4506 3.028850 ACTATTGCCGCTACACCTAGAA 58.971 45.455 0.00 0.00 0.00 2.10
4218 4507 2.361119 CACTATTGCCGCTACACCTAGA 59.639 50.000 0.00 0.00 0.00 2.43
4219 4508 2.545952 CCACTATTGCCGCTACACCTAG 60.546 54.545 0.00 0.00 0.00 3.02
4220 4509 1.411246 CCACTATTGCCGCTACACCTA 59.589 52.381 0.00 0.00 0.00 3.08
4221 4510 0.178068 CCACTATTGCCGCTACACCT 59.822 55.000 0.00 0.00 0.00 4.00
4222 4511 0.107848 ACCACTATTGCCGCTACACC 60.108 55.000 0.00 0.00 0.00 4.16
4223 4512 1.287425 GACCACTATTGCCGCTACAC 58.713 55.000 0.00 0.00 0.00 2.90
4224 4513 0.899019 TGACCACTATTGCCGCTACA 59.101 50.000 0.00 0.00 0.00 2.74
4225 4514 1.571919 CTGACCACTATTGCCGCTAC 58.428 55.000 0.00 0.00 0.00 3.58
4226 4515 0.464036 CCTGACCACTATTGCCGCTA 59.536 55.000 0.00 0.00 0.00 4.26
4227 4516 1.221840 CCTGACCACTATTGCCGCT 59.778 57.895 0.00 0.00 0.00 5.52
4228 4517 0.179045 ATCCTGACCACTATTGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
4229 4518 1.586422 CATCCTGACCACTATTGCCG 58.414 55.000 0.00 0.00 0.00 5.69
4230 4519 1.212935 ACCATCCTGACCACTATTGCC 59.787 52.381 0.00 0.00 0.00 4.52
4231 4520 2.292267 CACCATCCTGACCACTATTGC 58.708 52.381 0.00 0.00 0.00 3.56
4232 4521 2.923121 CCACCATCCTGACCACTATTG 58.077 52.381 0.00 0.00 0.00 1.90
4233 4522 1.212935 GCCACCATCCTGACCACTATT 59.787 52.381 0.00 0.00 0.00 1.73
4234 4523 0.839946 GCCACCATCCTGACCACTAT 59.160 55.000 0.00 0.00 0.00 2.12
4235 4524 0.252696 AGCCACCATCCTGACCACTA 60.253 55.000 0.00 0.00 0.00 2.74
4236 4525 1.136329 AAGCCACCATCCTGACCACT 61.136 55.000 0.00 0.00 0.00 4.00
4237 4526 0.251341 AAAGCCACCATCCTGACCAC 60.251 55.000 0.00 0.00 0.00 4.16
4238 4527 0.251297 CAAAGCCACCATCCTGACCA 60.251 55.000 0.00 0.00 0.00 4.02
4239 4528 0.967380 CCAAAGCCACCATCCTGACC 60.967 60.000 0.00 0.00 0.00 4.02
4240 4529 0.251341 ACCAAAGCCACCATCCTGAC 60.251 55.000 0.00 0.00 0.00 3.51
4241 4530 0.482446 AACCAAAGCCACCATCCTGA 59.518 50.000 0.00 0.00 0.00 3.86
4242 4531 1.001181 CAAACCAAAGCCACCATCCTG 59.999 52.381 0.00 0.00 0.00 3.86
4243 4532 1.133199 TCAAACCAAAGCCACCATCCT 60.133 47.619 0.00 0.00 0.00 3.24
4244 4533 1.337118 TCAAACCAAAGCCACCATCC 58.663 50.000 0.00 0.00 0.00 3.51
4245 4534 2.415893 CGATCAAACCAAAGCCACCATC 60.416 50.000 0.00 0.00 0.00 3.51
4246 4535 1.545582 CGATCAAACCAAAGCCACCAT 59.454 47.619 0.00 0.00 0.00 3.55
4247 4536 0.958091 CGATCAAACCAAAGCCACCA 59.042 50.000 0.00 0.00 0.00 4.17
4248 4537 1.243902 TCGATCAAACCAAAGCCACC 58.756 50.000 0.00 0.00 0.00 4.61
4249 4538 2.228822 ACATCGATCAAACCAAAGCCAC 59.771 45.455 0.00 0.00 0.00 5.01
4250 4539 2.513753 ACATCGATCAAACCAAAGCCA 58.486 42.857 0.00 0.00 0.00 4.75
4251 4540 4.900635 ATACATCGATCAAACCAAAGCC 57.099 40.909 0.00 0.00 0.00 4.35
4252 4541 5.516339 CCAAATACATCGATCAAACCAAAGC 59.484 40.000 0.00 0.00 0.00 3.51
4253 4542 6.620678 ACCAAATACATCGATCAAACCAAAG 58.379 36.000 0.00 0.00 0.00 2.77
4254 4543 6.432783 AGACCAAATACATCGATCAAACCAAA 59.567 34.615 0.00 0.00 0.00 3.28
4255 4544 5.943416 AGACCAAATACATCGATCAAACCAA 59.057 36.000 0.00 0.00 0.00 3.67
4256 4545 5.353956 CAGACCAAATACATCGATCAAACCA 59.646 40.000 0.00 0.00 0.00 3.67
4257 4546 5.354234 ACAGACCAAATACATCGATCAAACC 59.646 40.000 0.00 0.00 0.00 3.27
4258 4547 6.422776 ACAGACCAAATACATCGATCAAAC 57.577 37.500 0.00 0.00 0.00 2.93
4259 4548 7.304735 CAAACAGACCAAATACATCGATCAAA 58.695 34.615 0.00 0.00 0.00 2.69
4260 4549 6.128035 CCAAACAGACCAAATACATCGATCAA 60.128 38.462 0.00 0.00 0.00 2.57
4261 4550 5.353956 CCAAACAGACCAAATACATCGATCA 59.646 40.000 0.00 0.00 0.00 2.92
4262 4551 5.730568 GCCAAACAGACCAAATACATCGATC 60.731 44.000 0.00 0.00 0.00 3.69
4263 4552 4.096382 GCCAAACAGACCAAATACATCGAT 59.904 41.667 0.00 0.00 0.00 3.59
4264 4553 3.438781 GCCAAACAGACCAAATACATCGA 59.561 43.478 0.00 0.00 0.00 3.59
4265 4554 3.440173 AGCCAAACAGACCAAATACATCG 59.560 43.478 0.00 0.00 0.00 3.84
4266 4555 6.095440 ACATAGCCAAACAGACCAAATACATC 59.905 38.462 0.00 0.00 0.00 3.06
4267 4556 5.951747 ACATAGCCAAACAGACCAAATACAT 59.048 36.000 0.00 0.00 0.00 2.29
4268 4557 5.182950 CACATAGCCAAACAGACCAAATACA 59.817 40.000 0.00 0.00 0.00 2.29
4269 4558 5.393027 CCACATAGCCAAACAGACCAAATAC 60.393 44.000 0.00 0.00 0.00 1.89
4270 4559 4.704540 CCACATAGCCAAACAGACCAAATA 59.295 41.667 0.00 0.00 0.00 1.40
4387 5782 2.618241 CACCACACCCCAAATATGATCG 59.382 50.000 0.00 0.00 0.00 3.69
4389 5784 2.359143 CCCACCACACCCCAAATATGAT 60.359 50.000 0.00 0.00 0.00 2.45
4417 5812 1.904287 AGTATCTCTAGCAGCCCTCG 58.096 55.000 0.00 0.00 0.00 4.63
4418 5813 5.946972 TGTAATAGTATCTCTAGCAGCCCTC 59.053 44.000 0.00 0.00 31.67 4.30
4472 5867 2.201732 AGGCATTTATGTACGTGCTCG 58.798 47.619 6.63 6.63 43.34 5.03
4604 6002 7.115805 GTCGAATGAACACACACTACAAATCTA 59.884 37.037 0.00 0.00 0.00 1.98
4605 6003 5.989168 TCGAATGAACACACACTACAAATCT 59.011 36.000 0.00 0.00 0.00 2.40
4613 6011 2.158957 AGGTGTCGAATGAACACACACT 60.159 45.455 8.48 0.00 41.93 3.55
4661 6059 9.489084 GATTATTATAATGCACCACAGTGTCTA 57.511 33.333 8.28 0.00 46.35 2.59
4664 6062 8.696043 ATGATTATTATAATGCACCACAGTGT 57.304 30.769 8.28 0.00 46.35 3.55
4682 6080 8.373256 CGTGCGTATTCGAGAAAATATGATTAT 58.627 33.333 0.00 0.00 39.71 1.28
4683 6081 7.592164 TCGTGCGTATTCGAGAAAATATGATTA 59.408 33.333 0.00 0.00 39.71 1.75
4684 6082 6.419710 TCGTGCGTATTCGAGAAAATATGATT 59.580 34.615 0.00 0.00 39.71 2.57
4685 6083 5.918576 TCGTGCGTATTCGAGAAAATATGAT 59.081 36.000 0.00 0.00 39.71 2.45
4686 6084 5.275494 TCGTGCGTATTCGAGAAAATATGA 58.725 37.500 0.00 0.00 39.71 2.15
4687 6085 5.555190 TCGTGCGTATTCGAGAAAATATG 57.445 39.130 0.00 0.00 39.71 1.78
4696 6094 2.096335 ACATACACTCGTGCGTATTCGA 59.904 45.455 0.00 0.00 39.71 3.71
4697 6095 2.447250 ACATACACTCGTGCGTATTCG 58.553 47.619 0.00 0.00 40.37 3.34
4698 6096 5.209977 TGATACATACACTCGTGCGTATTC 58.790 41.667 0.00 0.00 29.57 1.75
4699 6097 5.177725 TGATACATACACTCGTGCGTATT 57.822 39.130 0.00 0.00 29.57 1.89
4700 6098 4.823790 TGATACATACACTCGTGCGTAT 57.176 40.909 0.00 2.65 31.03 3.06
4701 6099 4.823790 ATGATACATACACTCGTGCGTA 57.176 40.909 0.00 0.00 0.00 4.42
4702 6100 3.710326 ATGATACATACACTCGTGCGT 57.290 42.857 0.00 0.00 0.00 5.24
4703 6101 4.041723 TGAATGATACATACACTCGTGCG 58.958 43.478 0.00 0.00 0.00 5.34
4704 6102 5.043903 AGTGAATGATACATACACTCGTGC 58.956 41.667 0.00 0.00 37.24 5.34
4705 6103 7.639945 TCTAGTGAATGATACATACACTCGTG 58.360 38.462 0.00 0.00 41.17 4.35
4706 6104 7.715686 TCTCTAGTGAATGATACATACACTCGT 59.284 37.037 0.00 0.00 41.17 4.18
4707 6105 8.089115 TCTCTAGTGAATGATACATACACTCG 57.911 38.462 0.00 0.00 41.17 4.18
4708 6106 9.891828 CTTCTCTAGTGAATGATACATACACTC 57.108 37.037 7.65 0.00 41.17 3.51
4709 6107 9.634021 TCTTCTCTAGTGAATGATACATACACT 57.366 33.333 7.65 0.00 42.94 3.55
4714 6112 9.829507 CCTTTTCTTCTCTAGTGAATGATACAT 57.170 33.333 7.65 0.00 0.00 2.29
4715 6113 9.035890 TCCTTTTCTTCTCTAGTGAATGATACA 57.964 33.333 7.65 0.00 0.00 2.29
4716 6114 9.528018 CTCCTTTTCTTCTCTAGTGAATGATAC 57.472 37.037 7.65 0.00 0.00 2.24
4717 6115 9.480861 TCTCCTTTTCTTCTCTAGTGAATGATA 57.519 33.333 7.65 1.88 0.00 2.15
4718 6116 8.372877 TCTCCTTTTCTTCTCTAGTGAATGAT 57.627 34.615 7.65 0.00 0.00 2.45
4719 6117 7.782897 TCTCCTTTTCTTCTCTAGTGAATGA 57.217 36.000 7.65 5.45 0.00 2.57
4720 6118 8.839310 TTTCTCCTTTTCTTCTCTAGTGAATG 57.161 34.615 7.65 3.44 0.00 2.67
4721 6119 8.875168 TCTTTCTCCTTTTCTTCTCTAGTGAAT 58.125 33.333 7.65 0.00 0.00 2.57
4722 6120 8.251383 TCTTTCTCCTTTTCTTCTCTAGTGAA 57.749 34.615 7.02 7.02 0.00 3.18
4723 6121 7.039363 CCTCTTTCTCCTTTTCTTCTCTAGTGA 60.039 40.741 0.00 0.00 0.00 3.41
4724 6122 7.096551 CCTCTTTCTCCTTTTCTTCTCTAGTG 58.903 42.308 0.00 0.00 0.00 2.74
4725 6123 6.295632 GCCTCTTTCTCCTTTTCTTCTCTAGT 60.296 42.308 0.00 0.00 0.00 2.57
4726 6124 6.070824 AGCCTCTTTCTCCTTTTCTTCTCTAG 60.071 42.308 0.00 0.00 0.00 2.43
4727 6125 5.782845 AGCCTCTTTCTCCTTTTCTTCTCTA 59.217 40.000 0.00 0.00 0.00 2.43
4728 6126 4.597075 AGCCTCTTTCTCCTTTTCTTCTCT 59.403 41.667 0.00 0.00 0.00 3.10
4729 6127 4.905429 AGCCTCTTTCTCCTTTTCTTCTC 58.095 43.478 0.00 0.00 0.00 2.87
4730 6128 4.263287 GGAGCCTCTTTCTCCTTTTCTTCT 60.263 45.833 2.01 0.00 45.13 2.85
4731 6129 4.006989 GGAGCCTCTTTCTCCTTTTCTTC 58.993 47.826 2.01 0.00 45.13 2.87
4732 6130 4.027674 GGAGCCTCTTTCTCCTTTTCTT 57.972 45.455 2.01 0.00 45.13 2.52
4733 6131 3.712016 GGAGCCTCTTTCTCCTTTTCT 57.288 47.619 2.01 0.00 45.13 2.52
4740 6138 1.952839 GCTTTGGGGAGCCTCTTTCTC 60.953 57.143 0.00 0.00 36.66 2.87
4741 6139 0.038890 GCTTTGGGGAGCCTCTTTCT 59.961 55.000 0.00 0.00 36.66 2.52
4742 6140 2.572733 GCTTTGGGGAGCCTCTTTC 58.427 57.895 0.00 0.00 36.66 2.62
4743 6141 4.852388 GCTTTGGGGAGCCTCTTT 57.148 55.556 0.00 0.00 36.66 2.52
4749 6147 2.757980 TAACCGTGGCTTTGGGGAGC 62.758 60.000 0.00 0.00 41.96 4.70
4750 6148 0.958876 GTAACCGTGGCTTTGGGGAG 60.959 60.000 0.00 0.00 0.00 4.30
4751 6149 1.073548 GTAACCGTGGCTTTGGGGA 59.926 57.895 0.00 0.00 0.00 4.81
4752 6150 0.824182 TTGTAACCGTGGCTTTGGGG 60.824 55.000 0.00 0.00 0.00 4.96
4753 6151 0.596082 CTTGTAACCGTGGCTTTGGG 59.404 55.000 0.00 0.00 0.00 4.12
4754 6152 0.039527 GCTTGTAACCGTGGCTTTGG 60.040 55.000 0.00 0.00 0.00 3.28
4755 6153 0.665835 TGCTTGTAACCGTGGCTTTG 59.334 50.000 0.00 0.00 0.00 2.77
4756 6154 1.616159 ATGCTTGTAACCGTGGCTTT 58.384 45.000 0.00 0.00 0.00 3.51
4757 6155 1.616159 AATGCTTGTAACCGTGGCTT 58.384 45.000 0.00 0.00 0.00 4.35
4758 6156 2.483014 TAATGCTTGTAACCGTGGCT 57.517 45.000 0.00 0.00 0.00 4.75
4759 6157 4.886247 TTATAATGCTTGTAACCGTGGC 57.114 40.909 0.00 0.00 0.00 5.01
4760 6158 8.779303 TGATTATTATAATGCTTGTAACCGTGG 58.221 33.333 8.28 0.00 0.00 4.94
4796 6194 7.589958 ACATTCGAGTATCCAGAAGTAATCT 57.410 36.000 0.00 0.00 39.68 2.40
4819 6217 6.425577 TGCATAAGGTAAATGGACGTTTAC 57.574 37.500 15.42 15.42 41.56 2.01
4822 6220 6.826741 AGTTATGCATAAGGTAAATGGACGTT 59.173 34.615 19.41 0.00 0.00 3.99
5020 6424 4.680440 GCCCGCAATTCAAGGTATTTCATT 60.680 41.667 0.00 0.00 0.00 2.57
5054 6460 5.316167 TGTTTCATGCTTACAGTCCTTGAT 58.684 37.500 0.00 0.00 0.00 2.57
5187 6605 7.543756 ACTTTCAGTTTTCGGAAATTTCAGAA 58.456 30.769 24.16 24.16 41.49 3.02
5188 6606 7.095695 ACTTTCAGTTTTCGGAAATTTCAGA 57.904 32.000 19.49 17.62 41.49 3.27
5198 6616 5.485662 AAGTCAGAACTTTCAGTTTTCGG 57.514 39.130 0.00 0.00 43.28 4.30
5247 6665 2.802787 AATATGAGGACCGAGCTTCG 57.197 50.000 0.00 0.00 40.07 3.79
5259 6677 6.239887 CCCCCGGTCCCATAATATAATATGAG 60.240 46.154 9.05 0.00 35.69 2.90
5278 6719 5.258841 GGGAAATTAATAATACTCCCCCGG 58.741 45.833 16.63 0.00 37.27 5.73
5365 6807 7.600752 GTGTCAGGAGACCTATATTATTGAAGC 59.399 40.741 0.00 0.00 44.33 3.86
5558 7000 7.722795 TGGATATATTCATTGTACGTTGTGG 57.277 36.000 0.00 0.00 0.00 4.17
5632 7074 1.674057 CGAGAGGTATCCCATGCCC 59.326 63.158 0.00 0.00 35.38 5.36
5701 7144 1.112113 TGTCGACAGAGCTTATCCCC 58.888 55.000 15.76 0.00 0.00 4.81
5728 7171 8.856490 AACAACGGAATTAAGAAATCATATGC 57.144 30.769 0.00 0.00 0.00 3.14
5793 7237 4.260497 CGCATTGAGAAGACCACATACATG 60.260 45.833 0.00 0.00 0.00 3.21
5809 7261 5.687770 TTTCATCTTTTCAGACGCATTGA 57.312 34.783 0.00 0.00 0.00 2.57
5868 10786 8.392631 AGTGGGGATTGCACATAGATTATATA 57.607 34.615 0.00 0.00 0.00 0.86
5878 10796 2.897271 TTGTAGTGGGGATTGCACAT 57.103 45.000 0.00 0.00 0.00 3.21
5879 10797 2.666272 TTTGTAGTGGGGATTGCACA 57.334 45.000 0.00 0.00 0.00 4.57
5917 10836 8.108551 AGTCGGGAGTATATATACAACTGTTC 57.891 38.462 22.00 11.05 35.74 3.18
5992 10912 6.095440 CCTGTGAATTTGGAATAAGTACCCTG 59.905 42.308 0.00 0.00 0.00 4.45
6022 10942 1.134438 AAGAAGGCGGGGTCTCCTTT 61.134 55.000 0.00 0.00 42.37 3.11
6030 10950 0.821711 TTGACACAAAGAAGGCGGGG 60.822 55.000 0.00 0.00 0.00 5.73
6040 10960 5.048782 GCCATCATGAGTTAGTTGACACAAA 60.049 40.000 0.09 0.00 0.00 2.83
6044 10964 4.020307 TCAGCCATCATGAGTTAGTTGACA 60.020 41.667 0.09 0.00 0.00 3.58
6051 10971 4.987963 ATCCATCAGCCATCATGAGTTA 57.012 40.909 0.09 0.00 0.00 2.24
6054 10974 3.518303 TCCTATCCATCAGCCATCATGAG 59.482 47.826 0.09 0.00 0.00 2.90
6055 10975 3.518303 CTCCTATCCATCAGCCATCATGA 59.482 47.826 0.00 0.00 0.00 3.07
6056 10976 3.263681 ACTCCTATCCATCAGCCATCATG 59.736 47.826 0.00 0.00 0.00 3.07
6057 10977 3.263681 CACTCCTATCCATCAGCCATCAT 59.736 47.826 0.00 0.00 0.00 2.45
6058 10978 2.636403 CACTCCTATCCATCAGCCATCA 59.364 50.000 0.00 0.00 0.00 3.07
6059 10979 2.027377 CCACTCCTATCCATCAGCCATC 60.027 54.545 0.00 0.00 0.00 3.51
6060 10980 1.983691 CCACTCCTATCCATCAGCCAT 59.016 52.381 0.00 0.00 0.00 4.40
6061 10981 1.062198 TCCACTCCTATCCATCAGCCA 60.062 52.381 0.00 0.00 0.00 4.75
6062 10982 1.722034 TCCACTCCTATCCATCAGCC 58.278 55.000 0.00 0.00 0.00 4.85
6063 10983 2.546795 CGTTCCACTCCTATCCATCAGC 60.547 54.545 0.00 0.00 0.00 4.26
6116 11046 3.194329 TCCTGCATATCTCGTCATCATCC 59.806 47.826 0.00 0.00 0.00 3.51
6150 11080 3.069318 GTCCTCCGCCTCCGAAGT 61.069 66.667 0.00 0.00 36.29 3.01
6170 11100 5.973899 TGTTTTCATAGTGCCAAGCAATA 57.026 34.783 0.00 0.00 43.03 1.90
6221 11151 3.330267 CTGACTCTTAGTGGCCAACTTC 58.670 50.000 7.24 0.00 40.56 3.01
6231 11161 1.930251 TGCTGGAGCTGACTCTTAGT 58.070 50.000 0.00 0.00 42.98 2.24
6239 11169 1.949525 GTTTGACTTTGCTGGAGCTGA 59.050 47.619 0.00 0.00 42.66 4.26
6268 11198 4.079730 GGTCATTTGGGTCCCTAGAAGAAT 60.080 45.833 10.00 0.00 0.00 2.40
6321 11251 8.544009 AAAGATTATAACTTTCTCGGGCACCTG 61.544 40.741 7.03 0.00 38.68 4.00
6322 11252 6.578439 AAAGATTATAACTTTCTCGGGCACCT 60.578 38.462 7.03 0.00 38.68 4.00
6340 11270 3.432186 CGCCACTCTCCATCCAAAGATTA 60.432 47.826 0.00 0.00 0.00 1.75
6372 11302 3.695060 TGTTTGTTTTCCTTCGTAGCCAA 59.305 39.130 0.00 0.00 0.00 4.52
6389 11319 2.833794 TCGAGGGTTCTTCTGTGTTTG 58.166 47.619 0.00 0.00 0.00 2.93
6390 11320 3.771577 ATCGAGGGTTCTTCTGTGTTT 57.228 42.857 0.00 0.00 0.00 2.83
6412 11342 2.949177 ACTTACACAAGTGCCATCCA 57.051 45.000 0.00 0.00 43.50 3.41
6453 11383 9.014297 ACCTATTTGTCTTCAATACTCCAAAAG 57.986 33.333 0.00 0.00 33.32 2.27
6481 11411 6.449635 TGCTCACAAACACATTAGTCTTTT 57.550 33.333 0.00 0.00 0.00 2.27
6483 11413 6.710295 TGTATGCTCACAAACACATTAGTCTT 59.290 34.615 0.00 0.00 0.00 3.01
6484 11414 6.147821 GTGTATGCTCACAAACACATTAGTCT 59.852 38.462 0.00 0.00 41.43 3.24
6503 11433 7.834881 TTAGGGACTATTACTCCTGTGTATG 57.165 40.000 0.00 0.00 42.38 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.