Multiple sequence alignment - TraesCS2D01G234800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G234800 chr2D 100.000 6999 0 0 1 6999 218372081 218379079 0.000000e+00 12925.0
1 TraesCS2D01G234800 chr2D 93.869 473 29 0 1 473 636781643 636781171 0.000000e+00 713.0
2 TraesCS2D01G234800 chr2A 98.708 4257 45 6 2751 6999 324294656 324290402 0.000000e+00 7548.0
3 TraesCS2D01G234800 chr2A 94.989 2215 52 20 570 2754 324297716 324295531 0.000000e+00 3421.0
4 TraesCS2D01G234800 chr2B 95.930 3612 86 25 2788 6348 331228611 331232212 0.000000e+00 5799.0
5 TraesCS2D01G234800 chr2B 91.507 2084 71 40 653 2656 331226415 331228472 0.000000e+00 2771.0
6 TraesCS2D01G234800 chr2B 96.088 639 19 5 6362 6999 331243774 331244407 0.000000e+00 1037.0
7 TraesCS2D01G234800 chr2B 95.890 73 3 0 598 670 331226325 331226397 1.230000e-22 119.0
8 TraesCS2D01G234800 chr4D 95.717 467 20 0 3 469 87953142 87953608 0.000000e+00 752.0
9 TraesCS2D01G234800 chr4D 94.503 473 26 0 1 473 459878999 459878527 0.000000e+00 730.0
10 TraesCS2D01G234800 chr7D 94.958 476 24 0 1 476 94463088 94462613 0.000000e+00 747.0
11 TraesCS2D01G234800 chr7D 94.861 467 21 1 1 467 577643046 577642583 0.000000e+00 726.0
12 TraesCS2D01G234800 chr7D 94.658 468 24 1 1 468 605607245 605607711 0.000000e+00 725.0
13 TraesCS2D01G234800 chr5D 95.503 467 21 0 1 467 473094393 473094859 0.000000e+00 747.0
14 TraesCS2D01G234800 chr5D 94.647 467 22 1 1 467 275152759 275152296 0.000000e+00 721.0
15 TraesCS2D01G234800 chr5D 93.407 91 6 0 468 558 285670617 285670527 1.220000e-27 135.0
16 TraesCS2D01G234800 chr3A 94.872 468 21 1 1 468 706119095 706118631 0.000000e+00 728.0
17 TraesCS2D01G234800 chr3A 94.565 92 3 2 470 560 450697965 450697875 2.630000e-29 141.0
18 TraesCS2D01G234800 chr1B 94.624 93 4 1 467 558 642653334 642653426 7.320000e-30 143.0
19 TraesCS2D01G234800 chr5A 94.565 92 4 1 468 558 282466073 282465982 2.630000e-29 141.0
20 TraesCS2D01G234800 chr5A 93.407 91 6 0 468 558 11886481 11886391 1.220000e-27 135.0
21 TraesCS2D01G234800 chr6D 94.444 90 4 1 468 556 65995198 65995109 3.400000e-28 137.0
22 TraesCS2D01G234800 chr5B 93.478 92 5 1 468 558 17065769 17065860 1.220000e-27 135.0
23 TraesCS2D01G234800 chr5B 93.478 92 5 1 468 558 17362726 17362817 1.220000e-27 135.0
24 TraesCS2D01G234800 chr5B 93.478 92 5 1 468 558 17443235 17443326 1.220000e-27 135.0
25 TraesCS2D01G234800 chr3D 92.308 52 2 2 1844 1895 75957831 75957782 9.740000e-09 73.1
26 TraesCS2D01G234800 chr3D 87.719 57 4 3 1842 1895 593643222 593643278 5.860000e-06 63.9
27 TraesCS2D01G234800 chr1D 86.567 67 5 4 1833 1897 125864324 125864388 3.500000e-08 71.3
28 TraesCS2D01G234800 chr6A 86.792 53 4 3 1843 1895 26622779 26622730 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G234800 chr2D 218372081 218379079 6998 False 12925.000000 12925 100.000000 1 6999 1 chr2D.!!$F1 6998
1 TraesCS2D01G234800 chr2A 324290402 324297716 7314 True 5484.500000 7548 96.848500 570 6999 2 chr2A.!!$R1 6429
2 TraesCS2D01G234800 chr2B 331226325 331232212 5887 False 2896.333333 5799 94.442333 598 6348 3 chr2B.!!$F2 5750
3 TraesCS2D01G234800 chr2B 331243774 331244407 633 False 1037.000000 1037 96.088000 6362 6999 1 chr2B.!!$F1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 421 0.035152 ACAATTCGCATCTGAGGGCA 60.035 50.000 5.18 0.00 0.00 5.36 F
425 426 0.036732 TCGCATCTGAGGGCAAAACT 59.963 50.000 5.18 0.00 0.00 2.66 F
432 433 0.106769 TGAGGGCAAAACTGAGCACA 60.107 50.000 0.00 0.00 36.38 4.57 F
456 457 0.178992 CACCACTGAGGGCAAAAGGA 60.179 55.000 0.00 0.00 43.89 3.36 F
602 603 0.318955 ATGCGTTGGTCTTTTGCTGC 60.319 50.000 0.00 0.00 0.00 5.25 F
2578 2702 0.387929 TTCGATTCGATTCCTCGGGG 59.612 55.000 9.96 0.00 45.10 5.73 F
2710 2840 1.929494 TCCTTGGTAGATGGGCCAAAT 59.071 47.619 11.89 4.39 43.29 2.32 F
3317 4368 3.137544 TGGCCTCAGAGTTTTCCTTACAA 59.862 43.478 3.32 0.00 0.00 2.41 F
4924 5990 4.222145 GGAACAGTACTCACCATTGGTCTA 59.778 45.833 5.04 0.00 31.02 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2098 2.289631 TGATTGAGACGTCCACTGCAAT 60.290 45.455 13.01 13.7 0.00 3.56 R
2628 2758 7.255312 CGGAATCATATAGGAGTATCAGGTAGC 60.255 44.444 0.00 0.0 36.25 3.58 R
2671 2801 8.107095 ACCAAGGAATCAACTTTGCTACTATTA 58.893 33.333 0.00 0.0 0.00 0.98 R
2674 2804 5.876357 ACCAAGGAATCAACTTTGCTACTA 58.124 37.500 0.00 0.0 0.00 1.82 R
2889 3940 7.225538 ACCACTGATATTCTGAAATAAGAAGCG 59.774 37.037 0.00 0.0 39.47 4.68 R
3676 4739 0.249573 CCCGGCCGTGAATAATACGT 60.250 55.000 26.12 0.0 39.76 3.57 R
4327 5393 2.213499 CGAACTTGCCTTGTCTTCAGT 58.787 47.619 0.00 0.0 0.00 3.41 R
5092 6188 1.136329 ATGGGTGGAGGACAAGCAGT 61.136 55.000 0.00 0.0 0.00 4.40 R
6730 7853 0.819582 CATTGGCCCAGATGGTTGTC 59.180 55.000 0.00 0.0 36.04 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.681978 GTGGCGTCGCAGGAAGGT 62.682 66.667 20.50 0.00 0.00 3.50
63 64 4.680237 TGGCGTCGCAGGAAGGTG 62.680 66.667 20.50 0.00 0.00 4.00
87 88 3.755628 GTCGCAGGTAGCCGTGGA 61.756 66.667 0.00 0.00 41.38 4.02
88 89 3.449227 TCGCAGGTAGCCGTGGAG 61.449 66.667 0.00 0.00 41.38 3.86
91 92 3.760035 CAGGTAGCCGTGGAGCGT 61.760 66.667 0.00 0.00 39.32 5.07
92 93 2.044650 AGGTAGCCGTGGAGCGTA 60.045 61.111 0.00 0.00 39.32 4.42
93 94 2.119655 AGGTAGCCGTGGAGCGTAG 61.120 63.158 0.00 0.00 39.32 3.51
94 95 2.412112 GTAGCCGTGGAGCGTAGG 59.588 66.667 0.00 0.00 39.32 3.18
106 107 3.511595 CGTAGGCGCAGGACGGTA 61.512 66.667 10.83 0.00 43.93 4.02
107 108 2.412112 GTAGGCGCAGGACGGTAG 59.588 66.667 10.83 0.00 43.93 3.18
108 109 3.524606 TAGGCGCAGGACGGTAGC 61.525 66.667 10.83 0.00 43.93 3.58
210 211 3.785859 GGCGGATGGGCAGAGTGA 61.786 66.667 0.00 0.00 41.77 3.41
211 212 2.202987 GCGGATGGGCAGAGTGAG 60.203 66.667 0.00 0.00 0.00 3.51
212 213 2.202987 CGGATGGGCAGAGTGAGC 60.203 66.667 0.00 0.00 0.00 4.26
213 214 2.729479 CGGATGGGCAGAGTGAGCT 61.729 63.158 0.00 0.00 0.00 4.09
214 215 1.395045 CGGATGGGCAGAGTGAGCTA 61.395 60.000 0.00 0.00 0.00 3.32
215 216 0.392336 GGATGGGCAGAGTGAGCTAG 59.608 60.000 0.00 0.00 0.00 3.42
216 217 1.407936 GATGGGCAGAGTGAGCTAGA 58.592 55.000 0.00 0.00 0.00 2.43
217 218 1.759445 GATGGGCAGAGTGAGCTAGAA 59.241 52.381 0.00 0.00 0.00 2.10
218 219 1.871418 TGGGCAGAGTGAGCTAGAAT 58.129 50.000 0.00 0.00 0.00 2.40
219 220 1.759445 TGGGCAGAGTGAGCTAGAATC 59.241 52.381 0.00 0.00 0.00 2.52
220 221 1.069978 GGGCAGAGTGAGCTAGAATCC 59.930 57.143 0.00 0.00 0.00 3.01
221 222 2.038659 GGCAGAGTGAGCTAGAATCCT 58.961 52.381 0.00 0.00 0.00 3.24
222 223 3.226777 GGCAGAGTGAGCTAGAATCCTA 58.773 50.000 0.00 0.00 0.00 2.94
223 224 3.005367 GGCAGAGTGAGCTAGAATCCTAC 59.995 52.174 0.00 0.00 0.00 3.18
224 225 3.304391 GCAGAGTGAGCTAGAATCCTACG 60.304 52.174 0.00 0.00 0.00 3.51
225 226 4.130857 CAGAGTGAGCTAGAATCCTACGA 58.869 47.826 0.00 0.00 0.00 3.43
226 227 4.576873 CAGAGTGAGCTAGAATCCTACGAA 59.423 45.833 0.00 0.00 0.00 3.85
227 228 5.240623 CAGAGTGAGCTAGAATCCTACGAAT 59.759 44.000 0.00 0.00 0.00 3.34
228 229 5.240623 AGAGTGAGCTAGAATCCTACGAATG 59.759 44.000 0.00 0.00 0.00 2.67
229 230 5.133941 AGTGAGCTAGAATCCTACGAATGA 58.866 41.667 0.00 0.00 0.00 2.57
230 231 5.772672 AGTGAGCTAGAATCCTACGAATGAT 59.227 40.000 0.00 0.00 0.00 2.45
231 232 6.266558 AGTGAGCTAGAATCCTACGAATGATT 59.733 38.462 0.00 0.00 34.02 2.57
232 233 6.926272 GTGAGCTAGAATCCTACGAATGATTT 59.074 38.462 0.00 0.00 31.56 2.17
233 234 6.925718 TGAGCTAGAATCCTACGAATGATTTG 59.074 38.462 0.00 0.00 31.56 2.32
234 235 6.226787 AGCTAGAATCCTACGAATGATTTGG 58.773 40.000 0.00 0.00 31.56 3.28
235 236 5.409826 GCTAGAATCCTACGAATGATTTGGG 59.590 44.000 0.00 0.00 31.56 4.12
236 237 4.718961 AGAATCCTACGAATGATTTGGGG 58.281 43.478 0.00 0.00 31.56 4.96
237 238 4.412199 AGAATCCTACGAATGATTTGGGGA 59.588 41.667 10.34 10.34 31.56 4.81
238 239 5.073691 AGAATCCTACGAATGATTTGGGGAT 59.926 40.000 13.04 13.04 34.48 3.85
239 240 4.788925 TCCTACGAATGATTTGGGGATT 57.211 40.909 5.62 0.00 0.00 3.01
240 241 5.124036 TCCTACGAATGATTTGGGGATTT 57.876 39.130 5.62 0.00 0.00 2.17
241 242 6.255294 TCCTACGAATGATTTGGGGATTTA 57.745 37.500 5.62 0.00 0.00 1.40
242 243 6.296026 TCCTACGAATGATTTGGGGATTTAG 58.704 40.000 5.62 0.00 0.00 1.85
243 244 6.062095 CCTACGAATGATTTGGGGATTTAGT 58.938 40.000 0.00 0.00 0.00 2.24
244 245 6.546034 CCTACGAATGATTTGGGGATTTAGTT 59.454 38.462 0.00 0.00 0.00 2.24
245 246 6.207691 ACGAATGATTTGGGGATTTAGTTG 57.792 37.500 0.00 0.00 0.00 3.16
246 247 5.043248 CGAATGATTTGGGGATTTAGTTGC 58.957 41.667 0.00 0.00 0.00 4.17
247 248 5.394005 CGAATGATTTGGGGATTTAGTTGCA 60.394 40.000 0.00 0.00 0.00 4.08
248 249 4.799564 TGATTTGGGGATTTAGTTGCAC 57.200 40.909 0.00 0.00 0.00 4.57
249 250 3.192422 TGATTTGGGGATTTAGTTGCACG 59.808 43.478 0.00 0.00 0.00 5.34
250 251 1.540267 TTGGGGATTTAGTTGCACGG 58.460 50.000 0.00 0.00 0.00 4.94
251 252 0.322997 TGGGGATTTAGTTGCACGGG 60.323 55.000 0.00 0.00 0.00 5.28
252 253 1.663379 GGGGATTTAGTTGCACGGGC 61.663 60.000 0.34 0.34 41.68 6.13
253 254 1.663379 GGGATTTAGTTGCACGGGCC 61.663 60.000 7.46 0.00 40.13 5.80
254 255 0.679960 GGATTTAGTTGCACGGGCCT 60.680 55.000 7.46 0.00 40.13 5.19
255 256 1.407712 GGATTTAGTTGCACGGGCCTA 60.408 52.381 7.46 0.00 40.13 3.93
256 257 1.669265 GATTTAGTTGCACGGGCCTAC 59.331 52.381 7.46 5.37 40.13 3.18
257 258 0.397187 TTTAGTTGCACGGGCCTACA 59.603 50.000 7.46 0.00 40.13 2.74
258 259 0.616371 TTAGTTGCACGGGCCTACAT 59.384 50.000 7.46 0.00 40.13 2.29
259 260 0.107897 TAGTTGCACGGGCCTACATG 60.108 55.000 7.46 0.00 40.13 3.21
260 261 1.674322 GTTGCACGGGCCTACATGT 60.674 57.895 7.46 2.69 40.13 3.21
261 262 1.376683 TTGCACGGGCCTACATGTC 60.377 57.895 7.46 0.00 40.13 3.06
262 263 2.118233 TTGCACGGGCCTACATGTCA 62.118 55.000 7.46 0.00 40.13 3.58
263 264 1.815421 GCACGGGCCTACATGTCAG 60.815 63.158 0.00 0.00 0.00 3.51
264 265 1.815421 CACGGGCCTACATGTCAGC 60.815 63.158 0.00 6.54 0.00 4.26
265 266 1.990060 ACGGGCCTACATGTCAGCT 60.990 57.895 16.89 0.00 0.00 4.24
266 267 1.227380 CGGGCCTACATGTCAGCTC 60.227 63.158 16.89 13.33 0.00 4.09
267 268 1.147153 GGGCCTACATGTCAGCTCC 59.853 63.158 16.89 13.14 0.00 4.70
268 269 1.227380 GGCCTACATGTCAGCTCCG 60.227 63.158 16.89 0.00 0.00 4.63
269 270 1.227380 GCCTACATGTCAGCTCCGG 60.227 63.158 0.00 0.00 0.00 5.14
270 271 1.676678 GCCTACATGTCAGCTCCGGA 61.677 60.000 2.93 2.93 0.00 5.14
271 272 0.103208 CCTACATGTCAGCTCCGGAC 59.897 60.000 0.00 0.00 35.83 4.79
272 273 0.103208 CTACATGTCAGCTCCGGACC 59.897 60.000 0.00 0.00 34.36 4.46
273 274 1.327690 TACATGTCAGCTCCGGACCC 61.328 60.000 0.00 0.00 34.36 4.46
274 275 2.284625 ATGTCAGCTCCGGACCCA 60.285 61.111 0.00 0.00 34.36 4.51
275 276 2.660064 ATGTCAGCTCCGGACCCAC 61.660 63.158 0.00 0.00 34.36 4.61
276 277 4.436998 GTCAGCTCCGGACCCACG 62.437 72.222 0.00 0.00 0.00 4.94
277 278 4.988716 TCAGCTCCGGACCCACGT 62.989 66.667 0.00 0.00 0.00 4.49
278 279 4.436998 CAGCTCCGGACCCACGTC 62.437 72.222 0.00 0.00 38.38 4.34
287 288 4.295119 ACCCACGTCCACGCAGTC 62.295 66.667 0.00 0.00 41.61 3.51
290 291 4.293648 CACGTCCACGCAGTCCCA 62.294 66.667 0.00 0.00 41.61 4.37
291 292 3.311110 ACGTCCACGCAGTCCCAT 61.311 61.111 0.00 0.00 41.61 4.00
292 293 2.815211 CGTCCACGCAGTCCCATG 60.815 66.667 0.00 0.00 41.61 3.66
293 294 2.347490 GTCCACGCAGTCCCATGT 59.653 61.111 0.00 0.00 41.61 3.21
294 295 2.034879 GTCCACGCAGTCCCATGTG 61.035 63.158 0.00 0.00 41.61 3.21
295 296 2.032528 CCACGCAGTCCCATGTGT 59.967 61.111 0.00 0.00 41.61 3.72
296 297 1.188871 TCCACGCAGTCCCATGTGTA 61.189 55.000 0.00 0.00 41.61 2.90
297 298 0.321210 CCACGCAGTCCCATGTGTAA 60.321 55.000 0.00 0.00 41.61 2.41
298 299 1.078709 CACGCAGTCCCATGTGTAAG 58.921 55.000 0.00 0.00 41.61 2.34
299 300 0.673644 ACGCAGTCCCATGTGTAAGC 60.674 55.000 0.00 0.00 41.93 3.09
300 301 0.391661 CGCAGTCCCATGTGTAAGCT 60.392 55.000 0.00 0.00 0.00 3.74
301 302 1.373570 GCAGTCCCATGTGTAAGCTC 58.626 55.000 0.00 0.00 0.00 4.09
302 303 2.014068 GCAGTCCCATGTGTAAGCTCC 61.014 57.143 0.00 0.00 0.00 4.70
303 304 0.537188 AGTCCCATGTGTAAGCTCCG 59.463 55.000 0.00 0.00 0.00 4.63
304 305 0.462047 GTCCCATGTGTAAGCTCCGG 60.462 60.000 0.00 0.00 0.00 5.14
305 306 1.153168 CCCATGTGTAAGCTCCGGG 60.153 63.158 0.00 0.00 0.00 5.73
306 307 1.819632 CCATGTGTAAGCTCCGGGC 60.820 63.158 0.00 3.80 42.19 6.13
307 308 1.819632 CATGTGTAAGCTCCGGGCC 60.820 63.158 0.00 0.00 43.05 5.80
308 309 3.043999 ATGTGTAAGCTCCGGGCCC 62.044 63.158 13.57 13.57 43.05 5.80
309 310 3.712907 GTGTAAGCTCCGGGCCCA 61.713 66.667 24.92 0.93 43.05 5.36
310 311 3.712907 TGTAAGCTCCGGGCCCAC 61.713 66.667 24.92 11.21 43.05 4.61
311 312 3.712907 GTAAGCTCCGGGCCCACA 61.713 66.667 24.92 5.95 43.05 4.17
312 313 2.931105 TAAGCTCCGGGCCCACAA 60.931 61.111 24.92 4.90 43.05 3.33
313 314 3.262448 TAAGCTCCGGGCCCACAAC 62.262 63.158 24.92 8.31 43.05 3.32
318 319 3.642503 CCGGGCCCACAACCACTA 61.643 66.667 24.92 0.00 0.00 2.74
319 320 2.432563 CGGGCCCACAACCACTAA 59.567 61.111 24.92 0.00 0.00 2.24
320 321 1.969589 CGGGCCCACAACCACTAAC 60.970 63.158 24.92 0.00 0.00 2.34
321 322 1.969589 GGGCCCACAACCACTAACG 60.970 63.158 19.95 0.00 0.00 3.18
322 323 2.622962 GGCCCACAACCACTAACGC 61.623 63.158 0.00 0.00 0.00 4.84
323 324 2.622962 GCCCACAACCACTAACGCC 61.623 63.158 0.00 0.00 0.00 5.68
324 325 2.322081 CCCACAACCACTAACGCCG 61.322 63.158 0.00 0.00 0.00 6.46
325 326 2.322081 CCACAACCACTAACGCCGG 61.322 63.158 0.00 0.00 0.00 6.13
326 327 2.667199 ACAACCACTAACGCCGGC 60.667 61.111 19.07 19.07 0.00 6.13
327 328 3.784412 CAACCACTAACGCCGGCG 61.784 66.667 44.88 44.88 46.03 6.46
340 341 4.143333 CGGCGGACGGAATGGACT 62.143 66.667 0.00 0.00 39.42 3.85
341 342 2.202892 GGCGGACGGAATGGACTC 60.203 66.667 0.00 0.00 0.00 3.36
342 343 2.577059 GCGGACGGAATGGACTCA 59.423 61.111 0.00 0.00 0.00 3.41
343 344 1.079405 GCGGACGGAATGGACTCAA 60.079 57.895 0.00 0.00 0.00 3.02
344 345 0.672401 GCGGACGGAATGGACTCAAA 60.672 55.000 0.00 0.00 0.00 2.69
345 346 2.012051 GCGGACGGAATGGACTCAAAT 61.012 52.381 0.00 0.00 0.00 2.32
346 347 2.740580 GCGGACGGAATGGACTCAAATA 60.741 50.000 0.00 0.00 0.00 1.40
347 348 3.728845 CGGACGGAATGGACTCAAATAT 58.271 45.455 0.00 0.00 0.00 1.28
348 349 3.494626 CGGACGGAATGGACTCAAATATG 59.505 47.826 0.00 0.00 0.00 1.78
349 350 3.815401 GGACGGAATGGACTCAAATATGG 59.185 47.826 0.00 0.00 0.00 2.74
350 351 3.214328 ACGGAATGGACTCAAATATGGC 58.786 45.455 0.00 0.00 0.00 4.40
351 352 2.554032 CGGAATGGACTCAAATATGGCC 59.446 50.000 0.00 0.00 0.00 5.36
352 353 3.565307 GGAATGGACTCAAATATGGCCA 58.435 45.455 8.56 8.56 0.00 5.36
353 354 4.154942 GGAATGGACTCAAATATGGCCAT 58.845 43.478 24.45 24.45 37.71 4.40
354 355 4.590222 GGAATGGACTCAAATATGGCCATT 59.410 41.667 26.37 12.30 45.77 3.16
355 356 5.070847 GGAATGGACTCAAATATGGCCATTT 59.929 40.000 26.37 14.18 43.84 2.32
356 357 5.540400 ATGGACTCAAATATGGCCATTTG 57.460 39.130 26.37 23.20 44.00 2.32
357 358 3.705579 TGGACTCAAATATGGCCATTTGG 59.294 43.478 26.37 18.27 43.22 3.28
369 370 2.332063 CCATTTGGCCTCGTCATAGT 57.668 50.000 3.32 0.00 0.00 2.12
370 371 3.469008 CCATTTGGCCTCGTCATAGTA 57.531 47.619 3.32 0.00 0.00 1.82
371 372 3.804036 CCATTTGGCCTCGTCATAGTAA 58.196 45.455 3.32 0.00 0.00 2.24
372 373 3.560068 CCATTTGGCCTCGTCATAGTAAC 59.440 47.826 3.32 0.00 0.00 2.50
373 374 4.442706 CATTTGGCCTCGTCATAGTAACT 58.557 43.478 3.32 0.00 0.00 2.24
374 375 3.520290 TTGGCCTCGTCATAGTAACTG 57.480 47.619 3.32 0.00 0.00 3.16
375 376 2.453521 TGGCCTCGTCATAGTAACTGT 58.546 47.619 3.32 0.00 0.00 3.55
376 377 2.165641 TGGCCTCGTCATAGTAACTGTG 59.834 50.000 3.32 0.00 0.00 3.66
377 378 2.194271 GCCTCGTCATAGTAACTGTGC 58.806 52.381 0.00 0.00 0.00 4.57
378 379 2.416836 GCCTCGTCATAGTAACTGTGCA 60.417 50.000 0.00 0.00 0.00 4.57
379 380 3.738281 GCCTCGTCATAGTAACTGTGCAT 60.738 47.826 0.00 0.00 0.00 3.96
380 381 3.798878 CCTCGTCATAGTAACTGTGCATG 59.201 47.826 0.00 0.00 0.00 4.06
381 382 3.780902 TCGTCATAGTAACTGTGCATGG 58.219 45.455 0.00 0.00 0.00 3.66
382 383 3.445805 TCGTCATAGTAACTGTGCATGGA 59.554 43.478 0.00 0.00 0.00 3.41
383 384 3.551890 CGTCATAGTAACTGTGCATGGAC 59.448 47.826 10.90 10.90 0.00 4.02
384 385 4.678044 CGTCATAGTAACTGTGCATGGACT 60.678 45.833 18.75 0.64 0.00 3.85
385 386 5.449999 CGTCATAGTAACTGTGCATGGACTA 60.450 44.000 18.75 1.60 0.00 2.59
386 387 5.980116 GTCATAGTAACTGTGCATGGACTAG 59.020 44.000 18.75 15.27 0.00 2.57
387 388 5.891551 TCATAGTAACTGTGCATGGACTAGA 59.108 40.000 18.75 0.00 0.00 2.43
388 389 4.727507 AGTAACTGTGCATGGACTAGAG 57.272 45.455 18.75 10.03 0.00 2.43
389 390 3.449018 AGTAACTGTGCATGGACTAGAGG 59.551 47.826 18.75 6.19 0.00 3.69
390 391 0.539051 ACTGTGCATGGACTAGAGGC 59.461 55.000 18.75 0.00 0.00 4.70
391 392 0.538584 CTGTGCATGGACTAGAGGCA 59.461 55.000 18.75 0.00 0.00 4.75
392 393 0.983467 TGTGCATGGACTAGAGGCAA 59.017 50.000 18.75 0.00 36.08 4.52
393 394 1.350684 TGTGCATGGACTAGAGGCAAA 59.649 47.619 18.75 0.00 36.08 3.68
394 395 2.224744 TGTGCATGGACTAGAGGCAAAA 60.225 45.455 18.75 0.00 36.08 2.44
395 396 2.162408 GTGCATGGACTAGAGGCAAAAC 59.838 50.000 10.51 0.00 36.08 2.43
396 397 2.040278 TGCATGGACTAGAGGCAAAACT 59.960 45.455 0.00 0.00 0.00 2.66
397 398 2.421424 GCATGGACTAGAGGCAAAACTG 59.579 50.000 0.00 0.00 0.00 3.16
398 399 3.869912 GCATGGACTAGAGGCAAAACTGA 60.870 47.826 0.00 0.00 0.00 3.41
399 400 3.685139 TGGACTAGAGGCAAAACTGAG 57.315 47.619 0.00 0.00 0.00 3.35
400 401 2.289694 TGGACTAGAGGCAAAACTGAGC 60.290 50.000 0.00 0.00 0.00 4.26
401 402 2.289694 GGACTAGAGGCAAAACTGAGCA 60.290 50.000 0.00 0.00 0.00 4.26
402 403 2.739379 GACTAGAGGCAAAACTGAGCAC 59.261 50.000 0.00 0.00 0.00 4.40
403 404 2.104792 ACTAGAGGCAAAACTGAGCACA 59.895 45.455 0.00 0.00 0.00 4.57
404 405 2.057137 AGAGGCAAAACTGAGCACAA 57.943 45.000 0.00 0.00 0.00 3.33
405 406 2.590821 AGAGGCAAAACTGAGCACAAT 58.409 42.857 0.00 0.00 0.00 2.71
406 407 2.961062 AGAGGCAAAACTGAGCACAATT 59.039 40.909 0.00 0.00 0.00 2.32
407 408 3.005155 AGAGGCAAAACTGAGCACAATTC 59.995 43.478 0.00 0.00 0.00 2.17
408 409 2.053627 GGCAAAACTGAGCACAATTCG 58.946 47.619 0.00 0.00 0.00 3.34
409 410 1.453148 GCAAAACTGAGCACAATTCGC 59.547 47.619 0.00 0.00 0.00 4.70
410 411 2.730069 CAAAACTGAGCACAATTCGCA 58.270 42.857 0.00 0.00 0.00 5.10
411 412 3.311106 CAAAACTGAGCACAATTCGCAT 58.689 40.909 0.00 0.00 0.00 4.73
412 413 2.907910 AACTGAGCACAATTCGCATC 57.092 45.000 0.00 0.00 0.00 3.91
413 414 2.105006 ACTGAGCACAATTCGCATCT 57.895 45.000 0.00 0.00 0.00 2.90
414 415 1.736126 ACTGAGCACAATTCGCATCTG 59.264 47.619 0.00 2.00 0.00 2.90
415 416 2.004733 CTGAGCACAATTCGCATCTGA 58.995 47.619 0.00 0.00 0.00 3.27
416 417 2.004733 TGAGCACAATTCGCATCTGAG 58.995 47.619 0.00 0.00 0.00 3.35
417 418 1.329906 GAGCACAATTCGCATCTGAGG 59.670 52.381 0.00 0.00 0.00 3.86
418 419 0.379669 GCACAATTCGCATCTGAGGG 59.620 55.000 0.00 0.00 0.00 4.30
419 420 0.379669 CACAATTCGCATCTGAGGGC 59.620 55.000 0.00 0.00 0.00 5.19
420 421 0.035152 ACAATTCGCATCTGAGGGCA 60.035 50.000 5.18 0.00 0.00 5.36
421 422 1.097232 CAATTCGCATCTGAGGGCAA 58.903 50.000 5.18 0.25 0.00 4.52
422 423 1.473677 CAATTCGCATCTGAGGGCAAA 59.526 47.619 5.18 0.00 0.00 3.68
423 424 1.838112 ATTCGCATCTGAGGGCAAAA 58.162 45.000 5.18 0.00 0.00 2.44
424 425 0.881118 TTCGCATCTGAGGGCAAAAC 59.119 50.000 5.18 0.00 0.00 2.43
425 426 0.036732 TCGCATCTGAGGGCAAAACT 59.963 50.000 5.18 0.00 0.00 2.66
426 427 0.169672 CGCATCTGAGGGCAAAACTG 59.830 55.000 5.18 0.00 0.00 3.16
427 428 1.538047 GCATCTGAGGGCAAAACTGA 58.462 50.000 0.00 0.00 0.00 3.41
428 429 1.471684 GCATCTGAGGGCAAAACTGAG 59.528 52.381 0.00 0.00 0.00 3.35
429 430 1.471684 CATCTGAGGGCAAAACTGAGC 59.528 52.381 0.00 0.00 0.00 4.26
430 431 0.473755 TCTGAGGGCAAAACTGAGCA 59.526 50.000 0.00 0.00 0.00 4.26
431 432 0.595095 CTGAGGGCAAAACTGAGCAC 59.405 55.000 0.00 0.00 0.00 4.40
432 433 0.106769 TGAGGGCAAAACTGAGCACA 60.107 50.000 0.00 0.00 36.38 4.57
433 434 0.312102 GAGGGCAAAACTGAGCACAC 59.688 55.000 0.00 0.00 36.38 3.82
434 435 1.008538 GGGCAAAACTGAGCACACG 60.009 57.895 0.00 0.00 33.42 4.49
435 436 1.008538 GGCAAAACTGAGCACACGG 60.009 57.895 0.00 0.00 0.00 4.94
436 437 1.444119 GGCAAAACTGAGCACACGGA 61.444 55.000 0.00 0.00 0.00 4.69
437 438 0.317020 GCAAAACTGAGCACACGGAC 60.317 55.000 0.00 0.00 0.00 4.79
438 439 1.013596 CAAAACTGAGCACACGGACA 58.986 50.000 0.00 0.00 0.00 4.02
439 440 1.014352 AAAACTGAGCACACGGACAC 58.986 50.000 0.00 0.00 0.00 3.67
440 441 0.814010 AAACTGAGCACACGGACACC 60.814 55.000 0.00 0.00 0.00 4.16
441 442 1.966901 AACTGAGCACACGGACACCA 61.967 55.000 0.00 0.00 0.00 4.17
442 443 1.956170 CTGAGCACACGGACACCAC 60.956 63.158 0.00 0.00 0.00 4.16
443 444 2.369257 CTGAGCACACGGACACCACT 62.369 60.000 0.00 0.00 0.00 4.00
444 445 1.956170 GAGCACACGGACACCACTG 60.956 63.158 0.00 0.00 0.00 3.66
445 446 2.108157 GCACACGGACACCACTGA 59.892 61.111 0.00 0.00 0.00 3.41
446 447 1.956170 GCACACGGACACCACTGAG 60.956 63.158 0.00 0.00 0.00 3.35
447 448 1.300931 CACACGGACACCACTGAGG 60.301 63.158 0.00 0.00 45.67 3.86
448 449 2.343758 CACGGACACCACTGAGGG 59.656 66.667 0.00 0.00 43.89 4.30
449 450 3.626924 ACGGACACCACTGAGGGC 61.627 66.667 0.00 0.00 43.89 5.19
450 451 3.625897 CGGACACCACTGAGGGCA 61.626 66.667 0.00 0.00 43.89 5.36
451 452 2.836154 GGACACCACTGAGGGCAA 59.164 61.111 0.00 0.00 43.89 4.52
452 453 1.150536 GGACACCACTGAGGGCAAA 59.849 57.895 0.00 0.00 43.89 3.68
453 454 0.467290 GGACACCACTGAGGGCAAAA 60.467 55.000 0.00 0.00 43.89 2.44
454 455 0.954452 GACACCACTGAGGGCAAAAG 59.046 55.000 0.00 0.00 43.89 2.27
455 456 0.468029 ACACCACTGAGGGCAAAAGG 60.468 55.000 0.00 0.00 43.89 3.11
456 457 0.178992 CACCACTGAGGGCAAAAGGA 60.179 55.000 0.00 0.00 43.89 3.36
457 458 0.779997 ACCACTGAGGGCAAAAGGAT 59.220 50.000 0.00 0.00 43.89 3.24
458 459 1.992557 ACCACTGAGGGCAAAAGGATA 59.007 47.619 0.00 0.00 43.89 2.59
459 460 2.378547 ACCACTGAGGGCAAAAGGATAA 59.621 45.455 0.00 0.00 43.89 1.75
460 461 3.011708 ACCACTGAGGGCAAAAGGATAAT 59.988 43.478 0.00 0.00 43.89 1.28
461 462 4.026052 CCACTGAGGGCAAAAGGATAATT 58.974 43.478 0.00 0.00 0.00 1.40
462 463 5.200483 CCACTGAGGGCAAAAGGATAATTA 58.800 41.667 0.00 0.00 0.00 1.40
463 464 5.656416 CCACTGAGGGCAAAAGGATAATTAA 59.344 40.000 0.00 0.00 0.00 1.40
464 465 6.405842 CCACTGAGGGCAAAAGGATAATTAAC 60.406 42.308 0.00 0.00 0.00 2.01
465 466 5.656859 ACTGAGGGCAAAAGGATAATTAACC 59.343 40.000 3.60 3.60 0.00 2.85
466 467 4.959839 TGAGGGCAAAAGGATAATTAACCC 59.040 41.667 8.09 3.96 34.91 4.11
467 468 5.220872 AGGGCAAAAGGATAATTAACCCT 57.779 39.130 8.09 6.12 40.37 4.34
468 469 5.599751 AGGGCAAAAGGATAATTAACCCTT 58.400 37.500 13.69 13.69 42.56 3.95
469 470 5.661312 AGGGCAAAAGGATAATTAACCCTTC 59.339 40.000 17.65 9.33 42.56 3.46
470 471 5.661312 GGGCAAAAGGATAATTAACCCTTCT 59.339 40.000 17.65 6.53 39.21 2.85
471 472 6.156256 GGGCAAAAGGATAATTAACCCTTCTT 59.844 38.462 17.65 12.89 39.21 2.52
472 473 7.311046 GGGCAAAAGGATAATTAACCCTTCTTT 60.311 37.037 17.65 10.16 39.21 2.52
473 474 7.549134 GGCAAAAGGATAATTAACCCTTCTTTG 59.451 37.037 17.65 18.18 39.21 2.77
474 475 8.094548 GCAAAAGGATAATTAACCCTTCTTTGT 58.905 33.333 20.94 9.03 39.21 2.83
478 479 9.475620 AAGGATAATTAACCCTTCTTTGTAAGG 57.524 33.333 13.69 0.00 44.87 2.69
479 480 8.621073 AGGATAATTAACCCTTCTTTGTAAGGT 58.379 33.333 8.09 0.00 43.94 3.50
480 481 8.900781 GGATAATTAACCCTTCTTTGTAAGGTC 58.099 37.037 0.24 0.00 43.94 3.85
481 482 9.682465 GATAATTAACCCTTCTTTGTAAGGTCT 57.318 33.333 0.00 0.00 43.94 3.85
483 484 8.777578 AATTAACCCTTCTTTGTAAGGTCTTT 57.222 30.769 0.00 0.00 43.94 2.52
484 485 8.777578 ATTAACCCTTCTTTGTAAGGTCTTTT 57.222 30.769 0.00 0.00 43.94 2.27
485 486 6.465439 AACCCTTCTTTGTAAGGTCTTTTG 57.535 37.500 0.00 0.00 43.94 2.44
486 487 5.516044 ACCCTTCTTTGTAAGGTCTTTTGT 58.484 37.500 0.00 0.00 43.94 2.83
487 488 5.359860 ACCCTTCTTTGTAAGGTCTTTTGTG 59.640 40.000 0.00 0.00 43.94 3.33
488 489 5.592688 CCCTTCTTTGTAAGGTCTTTTGTGA 59.407 40.000 0.00 0.00 43.94 3.58
489 490 6.096282 CCCTTCTTTGTAAGGTCTTTTGTGAA 59.904 38.462 0.00 0.00 43.94 3.18
490 491 7.201911 CCCTTCTTTGTAAGGTCTTTTGTGAAT 60.202 37.037 0.00 0.00 43.94 2.57
491 492 8.846211 CCTTCTTTGTAAGGTCTTTTGTGAATA 58.154 33.333 0.00 0.00 41.06 1.75
524 525 4.750460 GCATGCATTGCCCAGATG 57.250 55.556 14.21 4.34 46.15 2.90
525 526 1.594293 GCATGCATTGCCCAGATGC 60.594 57.895 14.21 13.74 46.15 3.91
528 529 3.929002 GCATTGCCCAGATGCAGA 58.071 55.556 0.00 0.00 46.96 4.26
529 530 1.734137 GCATTGCCCAGATGCAGAG 59.266 57.895 0.00 0.00 46.96 3.35
530 531 1.735376 GCATTGCCCAGATGCAGAGG 61.735 60.000 0.00 0.00 46.96 3.69
531 532 1.455217 ATTGCCCAGATGCAGAGGC 60.455 57.895 11.10 11.10 43.21 4.70
532 533 2.923634 ATTGCCCAGATGCAGAGGCC 62.924 60.000 14.36 0.00 45.14 5.19
534 535 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
535 536 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
536 537 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
542 543 3.330720 CAGAGGCCGGGGGTCTTT 61.331 66.667 2.18 0.00 38.01 2.52
543 544 3.009714 AGAGGCCGGGGGTCTTTC 61.010 66.667 2.18 0.00 38.01 2.62
544 545 3.009714 GAGGCCGGGGGTCTTTCT 61.010 66.667 2.18 0.00 38.01 2.52
545 546 3.009714 AGGCCGGGGGTCTTTCTC 61.010 66.667 2.18 0.00 31.15 2.87
546 547 4.111053 GGCCGGGGGTCTTTCTCC 62.111 72.222 2.18 0.00 35.52 3.71
547 548 3.009714 GCCGGGGGTCTTTCTCCT 61.010 66.667 2.18 0.00 36.78 3.69
548 549 2.603652 GCCGGGGGTCTTTCTCCTT 61.604 63.158 2.18 0.00 36.78 3.36
549 550 2.075837 CCGGGGGTCTTTCTCCTTT 58.924 57.895 0.00 0.00 36.78 3.11
550 551 0.404426 CCGGGGGTCTTTCTCCTTTT 59.596 55.000 0.00 0.00 36.78 2.27
551 552 1.203013 CCGGGGGTCTTTCTCCTTTTT 60.203 52.381 0.00 0.00 36.78 1.94
552 553 2.040679 CCGGGGGTCTTTCTCCTTTTTA 59.959 50.000 0.00 0.00 36.78 1.52
553 554 3.499021 CCGGGGGTCTTTCTCCTTTTTAA 60.499 47.826 0.00 0.00 36.78 1.52
554 555 4.146564 CGGGGGTCTTTCTCCTTTTTAAA 58.853 43.478 0.00 0.00 36.78 1.52
555 556 4.585581 CGGGGGTCTTTCTCCTTTTTAAAA 59.414 41.667 0.00 0.00 36.78 1.52
556 557 5.069383 CGGGGGTCTTTCTCCTTTTTAAAAA 59.931 40.000 12.62 12.62 36.78 1.94
576 577 5.446143 AAAACACACACACACAAAGAAGA 57.554 34.783 0.00 0.00 0.00 2.87
577 578 5.446143 AAACACACACACACAAAGAAGAA 57.554 34.783 0.00 0.00 0.00 2.52
578 579 5.446143 AACACACACACACAAAGAAGAAA 57.554 34.783 0.00 0.00 0.00 2.52
592 593 5.767816 AAGAAGAAAAACTATGCGTTGGT 57.232 34.783 0.00 0.00 35.61 3.67
601 602 2.226437 ACTATGCGTTGGTCTTTTGCTG 59.774 45.455 0.00 0.00 0.00 4.41
602 603 0.318955 ATGCGTTGGTCTTTTGCTGC 60.319 50.000 0.00 0.00 0.00 5.25
705 741 1.595929 ACCCAACAACCACGCTACG 60.596 57.895 0.00 0.00 0.00 3.51
706 742 2.554272 CCAACAACCACGCTACGC 59.446 61.111 0.00 0.00 0.00 4.42
707 743 1.959226 CCAACAACCACGCTACGCT 60.959 57.895 0.00 0.00 0.00 5.07
708 744 0.668096 CCAACAACCACGCTACGCTA 60.668 55.000 0.00 0.00 0.00 4.26
709 745 0.437295 CAACAACCACGCTACGCTAC 59.563 55.000 0.00 0.00 0.00 3.58
710 746 0.668401 AACAACCACGCTACGCTACC 60.668 55.000 0.00 0.00 0.00 3.18
711 747 1.808390 CAACCACGCTACGCTACCC 60.808 63.158 0.00 0.00 0.00 3.69
712 748 2.277591 AACCACGCTACGCTACCCA 61.278 57.895 0.00 0.00 0.00 4.51
713 749 2.104331 CCACGCTACGCTACCCAG 59.896 66.667 0.00 0.00 0.00 4.45
761 797 2.865551 CACAGCCAAACAATGTGTTTCC 59.134 45.455 3.43 0.00 46.61 3.13
836 887 4.077188 GTTGTCCGCAGCGAGCAC 62.077 66.667 18.75 10.41 46.13 4.40
847 898 4.814900 CGAGCACGCTGGATAGTT 57.185 55.556 0.00 0.00 0.00 2.24
851 902 1.153628 GCACGCTGGATAGTTCGGT 60.154 57.895 0.00 0.00 0.00 4.69
904 955 3.518998 GCATGCTGCCTGCCTGAG 61.519 66.667 17.59 0.00 39.22 3.35
995 1048 0.819582 GGTGTCTTTGGCCATGATGG 59.180 55.000 6.09 7.21 41.55 3.51
1017 1070 7.862274 TGGATGGATGATAGATAGTTCAAGT 57.138 36.000 0.00 0.00 0.00 3.16
1059 1112 8.197988 TCTTCTTCGCTAATTCTTTATTGGAC 57.802 34.615 0.00 0.00 0.00 4.02
1209 1278 4.764823 GGATTCACCATCACAACTGGTTTA 59.235 41.667 0.00 0.00 44.67 2.01
1211 1280 3.482436 TCACCATCACAACTGGTTTACC 58.518 45.455 0.00 0.00 44.67 2.85
1212 1281 3.117851 TCACCATCACAACTGGTTTACCA 60.118 43.478 1.01 1.01 44.67 3.25
1397 1484 9.638239 TGAAAAAGCTACATATGATTTTTGGTC 57.362 29.630 10.38 6.58 34.25 4.02
1823 1924 7.038799 TGTTAGGTTCTAAAACTCGATAACCCT 60.039 37.037 0.00 0.00 37.65 4.34
1883 1985 3.790437 CACCCTCGGCCTCTGCAT 61.790 66.667 0.00 0.00 40.13 3.96
1938 2044 1.856629 TAGGACCTAACCCGTTCCAG 58.143 55.000 0.00 0.00 0.00 3.86
1988 2098 3.635836 TGTTGATTTGCAATCCTGTGTGA 59.364 39.130 0.00 0.00 39.03 3.58
2481 2605 0.392863 TTCATGGGCATCACCACGAG 60.393 55.000 0.00 0.00 44.72 4.18
2578 2702 0.387929 TTCGATTCGATTCCTCGGGG 59.612 55.000 9.96 0.00 45.10 5.73
2665 2795 7.132805 TCCTATATGATTCCGTGGATTCCTAT 58.867 38.462 3.95 9.73 0.00 2.57
2666 2796 8.286620 TCCTATATGATTCCGTGGATTCCTATA 58.713 37.037 3.95 10.20 0.00 1.31
2667 2797 8.361139 CCTATATGATTCCGTGGATTCCTATAC 58.639 40.741 3.95 0.00 0.00 1.47
2668 2798 7.979786 ATATGATTCCGTGGATTCCTATACT 57.020 36.000 3.95 0.00 0.00 2.12
2670 2800 6.585695 TGATTCCGTGGATTCCTATACTAC 57.414 41.667 3.95 0.00 0.00 2.73
2671 2801 6.312529 TGATTCCGTGGATTCCTATACTACT 58.687 40.000 3.95 0.00 0.00 2.57
2672 2802 7.464273 TGATTCCGTGGATTCCTATACTACTA 58.536 38.462 3.95 0.00 0.00 1.82
2673 2803 7.946219 TGATTCCGTGGATTCCTATACTACTAA 59.054 37.037 3.95 0.00 0.00 2.24
2674 2804 8.896722 ATTCCGTGGATTCCTATACTACTAAT 57.103 34.615 3.95 0.00 0.00 1.73
2710 2840 1.929494 TCCTTGGTAGATGGGCCAAAT 59.071 47.619 11.89 4.39 43.29 2.32
2715 2845 5.188751 CCTTGGTAGATGGGCCAAATTAAAA 59.811 40.000 11.89 0.78 43.29 1.52
2897 3948 8.896320 TTTCTAAATACATATGCCGCTTCTTA 57.104 30.769 1.58 0.00 0.00 2.10
3317 4368 3.137544 TGGCCTCAGAGTTTTCCTTACAA 59.862 43.478 3.32 0.00 0.00 2.41
4924 5990 4.222145 GGAACAGTACTCACCATTGGTCTA 59.778 45.833 5.04 0.00 31.02 2.59
5092 6188 2.612604 GTGTACACGCACACATATCCA 58.387 47.619 10.84 0.00 46.55 3.41
5635 6731 3.062639 GGATATCTTATGCGGATGTTGCG 59.937 47.826 0.00 0.00 34.24 4.85
6295 7414 8.797266 TGTGATAGTTATAAGAGCATTACACG 57.203 34.615 0.00 0.00 0.00 4.49
6476 7598 5.363517 GTGTCTGAAAAATGTAACTCGTCG 58.636 41.667 0.00 0.00 0.00 5.12
6534 7656 9.882996 CTGATAATTAATTCTTTGCGCTCATTA 57.117 29.630 9.73 1.27 0.00 1.90
6626 7749 7.117812 GTGAAGAAATGGAAACTCGTTCTCATA 59.882 37.037 0.00 0.00 36.40 2.15
6782 7905 5.442391 TGCCCTTATACCATAAAGGACAAC 58.558 41.667 2.69 0.00 44.27 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.681978 ACCTTCCTGCGACGCCAC 62.682 66.667 18.69 0.00 0.00 5.01
46 47 4.680237 CACCTTCCTGCGACGCCA 62.680 66.667 18.69 4.55 0.00 5.69
70 71 3.701604 CTCCACGGCTACCTGCGAC 62.702 68.421 0.00 0.00 44.05 5.19
71 72 3.449227 CTCCACGGCTACCTGCGA 61.449 66.667 0.00 0.00 44.05 5.10
89 90 3.465296 CTACCGTCCTGCGCCTACG 62.465 68.421 16.44 16.44 44.07 3.51
90 91 2.412112 CTACCGTCCTGCGCCTAC 59.588 66.667 4.18 0.00 39.71 3.18
91 92 3.524606 GCTACCGTCCTGCGCCTA 61.525 66.667 4.18 0.00 39.71 3.93
193 194 3.746949 CTCACTCTGCCCATCCGCC 62.747 68.421 0.00 0.00 0.00 6.13
194 195 2.202987 CTCACTCTGCCCATCCGC 60.203 66.667 0.00 0.00 0.00 5.54
195 196 1.395045 TAGCTCACTCTGCCCATCCG 61.395 60.000 0.00 0.00 0.00 4.18
196 197 0.392336 CTAGCTCACTCTGCCCATCC 59.608 60.000 0.00 0.00 0.00 3.51
197 198 1.407936 TCTAGCTCACTCTGCCCATC 58.592 55.000 0.00 0.00 0.00 3.51
198 199 1.871418 TTCTAGCTCACTCTGCCCAT 58.129 50.000 0.00 0.00 0.00 4.00
199 200 1.759445 GATTCTAGCTCACTCTGCCCA 59.241 52.381 0.00 0.00 0.00 5.36
200 201 1.069978 GGATTCTAGCTCACTCTGCCC 59.930 57.143 0.00 0.00 0.00 5.36
201 202 2.038659 AGGATTCTAGCTCACTCTGCC 58.961 52.381 0.00 0.00 0.00 4.85
202 203 3.304391 CGTAGGATTCTAGCTCACTCTGC 60.304 52.174 0.00 0.00 0.00 4.26
203 204 4.130857 TCGTAGGATTCTAGCTCACTCTG 58.869 47.826 0.00 0.00 0.00 3.35
204 205 4.425180 TCGTAGGATTCTAGCTCACTCT 57.575 45.455 0.00 0.00 0.00 3.24
205 206 5.239744 TCATTCGTAGGATTCTAGCTCACTC 59.760 44.000 0.00 0.00 0.00 3.51
206 207 5.133941 TCATTCGTAGGATTCTAGCTCACT 58.866 41.667 0.00 0.00 0.00 3.41
207 208 5.440234 TCATTCGTAGGATTCTAGCTCAC 57.560 43.478 0.00 0.00 0.00 3.51
208 209 6.656632 AATCATTCGTAGGATTCTAGCTCA 57.343 37.500 0.00 0.00 29.22 4.26
209 210 6.367422 CCAAATCATTCGTAGGATTCTAGCTC 59.633 42.308 2.38 0.00 33.92 4.09
210 211 6.226787 CCAAATCATTCGTAGGATTCTAGCT 58.773 40.000 2.38 0.00 33.92 3.32
211 212 5.409826 CCCAAATCATTCGTAGGATTCTAGC 59.590 44.000 2.38 0.00 33.92 3.42
212 213 5.934625 CCCCAAATCATTCGTAGGATTCTAG 59.065 44.000 2.38 0.00 33.92 2.43
213 214 5.605069 TCCCCAAATCATTCGTAGGATTCTA 59.395 40.000 2.38 0.00 33.92 2.10
214 215 4.412199 TCCCCAAATCATTCGTAGGATTCT 59.588 41.667 2.38 0.00 33.92 2.40
215 216 4.714632 TCCCCAAATCATTCGTAGGATTC 58.285 43.478 2.38 0.00 33.92 2.52
216 217 4.788925 TCCCCAAATCATTCGTAGGATT 57.211 40.909 0.00 0.00 36.40 3.01
217 218 5.324832 AATCCCCAAATCATTCGTAGGAT 57.675 39.130 0.00 0.00 34.36 3.24
218 219 4.788925 AATCCCCAAATCATTCGTAGGA 57.211 40.909 0.00 0.00 0.00 2.94
219 220 6.062095 ACTAAATCCCCAAATCATTCGTAGG 58.938 40.000 0.00 0.00 0.00 3.18
220 221 7.417612 CAACTAAATCCCCAAATCATTCGTAG 58.582 38.462 0.00 0.00 0.00 3.51
221 222 6.183360 GCAACTAAATCCCCAAATCATTCGTA 60.183 38.462 0.00 0.00 0.00 3.43
222 223 5.394115 GCAACTAAATCCCCAAATCATTCGT 60.394 40.000 0.00 0.00 0.00 3.85
223 224 5.043248 GCAACTAAATCCCCAAATCATTCG 58.957 41.667 0.00 0.00 0.00 3.34
224 225 5.812127 GTGCAACTAAATCCCCAAATCATTC 59.188 40.000 0.00 0.00 0.00 2.67
225 226 5.624281 CGTGCAACTAAATCCCCAAATCATT 60.624 40.000 0.00 0.00 31.75 2.57
226 227 4.142182 CGTGCAACTAAATCCCCAAATCAT 60.142 41.667 0.00 0.00 31.75 2.45
227 228 3.192422 CGTGCAACTAAATCCCCAAATCA 59.808 43.478 0.00 0.00 31.75 2.57
228 229 3.428862 CCGTGCAACTAAATCCCCAAATC 60.429 47.826 0.00 0.00 31.75 2.17
229 230 2.495669 CCGTGCAACTAAATCCCCAAAT 59.504 45.455 0.00 0.00 31.75 2.32
230 231 1.889829 CCGTGCAACTAAATCCCCAAA 59.110 47.619 0.00 0.00 31.75 3.28
231 232 1.540267 CCGTGCAACTAAATCCCCAA 58.460 50.000 0.00 0.00 31.75 4.12
232 233 0.322997 CCCGTGCAACTAAATCCCCA 60.323 55.000 0.00 0.00 31.75 4.96
233 234 1.663379 GCCCGTGCAACTAAATCCCC 61.663 60.000 0.00 0.00 37.47 4.81
234 235 1.663379 GGCCCGTGCAACTAAATCCC 61.663 60.000 0.00 0.00 40.13 3.85
235 236 0.679960 AGGCCCGTGCAACTAAATCC 60.680 55.000 0.00 0.00 40.13 3.01
236 237 1.669265 GTAGGCCCGTGCAACTAAATC 59.331 52.381 0.00 0.00 40.13 2.17
237 238 1.003812 TGTAGGCCCGTGCAACTAAAT 59.996 47.619 0.00 0.00 40.13 1.40
238 239 0.397187 TGTAGGCCCGTGCAACTAAA 59.603 50.000 0.00 0.00 40.13 1.85
239 240 0.616371 ATGTAGGCCCGTGCAACTAA 59.384 50.000 0.00 0.00 40.13 2.24
240 241 0.107897 CATGTAGGCCCGTGCAACTA 60.108 55.000 0.00 0.00 40.13 2.24
241 242 1.377202 CATGTAGGCCCGTGCAACT 60.377 57.895 0.00 0.00 40.13 3.16
242 243 1.644786 GACATGTAGGCCCGTGCAAC 61.645 60.000 0.00 0.00 40.13 4.17
243 244 1.376683 GACATGTAGGCCCGTGCAA 60.377 57.895 0.00 0.00 40.13 4.08
244 245 2.267642 GACATGTAGGCCCGTGCA 59.732 61.111 0.00 0.00 40.13 4.57
245 246 1.815421 CTGACATGTAGGCCCGTGC 60.815 63.158 0.00 0.00 0.00 5.34
246 247 1.815421 GCTGACATGTAGGCCCGTG 60.815 63.158 0.00 0.00 0.00 4.94
247 248 1.961180 GAGCTGACATGTAGGCCCGT 61.961 60.000 15.90 1.83 0.00 5.28
248 249 1.227380 GAGCTGACATGTAGGCCCG 60.227 63.158 15.90 0.00 0.00 6.13
249 250 1.147153 GGAGCTGACATGTAGGCCC 59.853 63.158 15.90 13.36 0.00 5.80
250 251 1.227380 CGGAGCTGACATGTAGGCC 60.227 63.158 15.90 0.00 0.00 5.19
251 252 1.227380 CCGGAGCTGACATGTAGGC 60.227 63.158 12.80 12.80 0.00 3.93
252 253 0.103208 GTCCGGAGCTGACATGTAGG 59.897 60.000 3.06 0.00 32.91 3.18
253 254 0.103208 GGTCCGGAGCTGACATGTAG 59.897 60.000 26.19 0.00 34.36 2.74
254 255 1.327690 GGGTCCGGAGCTGACATGTA 61.328 60.000 31.09 0.00 34.36 2.29
255 256 2.660064 GGGTCCGGAGCTGACATGT 61.660 63.158 31.09 0.00 34.36 3.21
256 257 2.187946 GGGTCCGGAGCTGACATG 59.812 66.667 31.09 0.00 34.36 3.21
257 258 2.284625 TGGGTCCGGAGCTGACAT 60.285 61.111 31.09 0.00 34.36 3.06
258 259 3.311110 GTGGGTCCGGAGCTGACA 61.311 66.667 31.09 18.96 34.36 3.58
259 260 4.436998 CGTGGGTCCGGAGCTGAC 62.437 72.222 31.09 24.80 0.00 3.51
260 261 4.988716 ACGTGGGTCCGGAGCTGA 62.989 66.667 31.09 16.66 0.00 4.26
261 262 4.436998 GACGTGGGTCCGGAGCTG 62.437 72.222 31.09 22.67 37.19 4.24
269 270 4.295119 ACTGCGTGGACGTGGGTC 62.295 66.667 0.00 0.00 42.66 4.46
270 271 4.295119 GACTGCGTGGACGTGGGT 62.295 66.667 0.00 0.00 42.22 4.51
273 274 3.589654 ATGGGACTGCGTGGACGTG 62.590 63.158 0.00 0.00 42.22 4.49
274 275 3.311110 ATGGGACTGCGTGGACGT 61.311 61.111 0.52 0.00 42.22 4.34
275 276 2.815211 CATGGGACTGCGTGGACG 60.815 66.667 0.00 0.00 43.27 4.79
276 277 2.034879 CACATGGGACTGCGTGGAC 61.035 63.158 0.00 0.00 0.00 4.02
277 278 1.188871 TACACATGGGACTGCGTGGA 61.189 55.000 0.00 0.00 33.62 4.02
278 279 0.321210 TTACACATGGGACTGCGTGG 60.321 55.000 0.00 0.00 33.62 4.94
279 280 1.078709 CTTACACATGGGACTGCGTG 58.921 55.000 0.00 0.00 35.48 5.34
280 281 0.673644 GCTTACACATGGGACTGCGT 60.674 55.000 0.00 0.00 0.00 5.24
281 282 0.391661 AGCTTACACATGGGACTGCG 60.392 55.000 0.00 0.00 0.00 5.18
282 283 1.373570 GAGCTTACACATGGGACTGC 58.626 55.000 0.00 2.02 0.00 4.40
283 284 1.740380 CGGAGCTTACACATGGGACTG 60.740 57.143 0.00 0.00 0.00 3.51
284 285 0.537188 CGGAGCTTACACATGGGACT 59.463 55.000 0.00 0.00 0.00 3.85
285 286 0.462047 CCGGAGCTTACACATGGGAC 60.462 60.000 0.00 0.00 0.00 4.46
286 287 1.622607 CCCGGAGCTTACACATGGGA 61.623 60.000 0.73 0.00 37.35 4.37
287 288 1.153168 CCCGGAGCTTACACATGGG 60.153 63.158 0.73 0.00 0.00 4.00
288 289 1.819632 GCCCGGAGCTTACACATGG 60.820 63.158 0.73 0.00 38.99 3.66
289 290 1.819632 GGCCCGGAGCTTACACATG 60.820 63.158 0.73 0.00 43.05 3.21
290 291 2.590092 GGCCCGGAGCTTACACAT 59.410 61.111 0.73 0.00 43.05 3.21
291 292 3.712907 GGGCCCGGAGCTTACACA 61.713 66.667 5.69 0.00 43.05 3.72
292 293 3.712907 TGGGCCCGGAGCTTACAC 61.713 66.667 19.37 0.00 43.05 2.90
293 294 3.712907 GTGGGCCCGGAGCTTACA 61.713 66.667 19.37 3.36 43.05 2.41
294 295 3.262448 TTGTGGGCCCGGAGCTTAC 62.262 63.158 19.37 8.41 43.05 2.34
295 296 2.931105 TTGTGGGCCCGGAGCTTA 60.931 61.111 19.37 0.00 43.05 3.09
296 297 4.660938 GTTGTGGGCCCGGAGCTT 62.661 66.667 19.37 0.00 43.05 3.74
301 302 3.198953 TTAGTGGTTGTGGGCCCGG 62.199 63.158 19.37 0.00 0.00 5.73
302 303 1.969589 GTTAGTGGTTGTGGGCCCG 60.970 63.158 19.37 0.00 0.00 6.13
303 304 1.969589 CGTTAGTGGTTGTGGGCCC 60.970 63.158 17.59 17.59 0.00 5.80
304 305 2.622962 GCGTTAGTGGTTGTGGGCC 61.623 63.158 0.00 0.00 0.00 5.80
305 306 2.622962 GGCGTTAGTGGTTGTGGGC 61.623 63.158 0.00 0.00 0.00 5.36
306 307 2.322081 CGGCGTTAGTGGTTGTGGG 61.322 63.158 0.00 0.00 0.00 4.61
307 308 2.322081 CCGGCGTTAGTGGTTGTGG 61.322 63.158 6.01 0.00 0.00 4.17
308 309 2.961669 GCCGGCGTTAGTGGTTGTG 61.962 63.158 12.58 0.00 0.00 3.33
309 310 2.667199 GCCGGCGTTAGTGGTTGT 60.667 61.111 12.58 0.00 0.00 3.32
310 311 3.784412 CGCCGGCGTTAGTGGTTG 61.784 66.667 39.71 8.63 34.35 3.77
323 324 4.143333 AGTCCATTCCGTCCGCCG 62.143 66.667 0.00 0.00 0.00 6.46
324 325 2.202892 GAGTCCATTCCGTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
325 326 0.672401 TTTGAGTCCATTCCGTCCGC 60.672 55.000 0.00 0.00 0.00 5.54
326 327 2.024176 ATTTGAGTCCATTCCGTCCG 57.976 50.000 0.00 0.00 0.00 4.79
327 328 3.815401 CCATATTTGAGTCCATTCCGTCC 59.185 47.826 0.00 0.00 0.00 4.79
328 329 3.251004 GCCATATTTGAGTCCATTCCGTC 59.749 47.826 0.00 0.00 0.00 4.79
329 330 3.214328 GCCATATTTGAGTCCATTCCGT 58.786 45.455 0.00 0.00 0.00 4.69
330 331 2.554032 GGCCATATTTGAGTCCATTCCG 59.446 50.000 0.00 0.00 0.00 4.30
331 332 3.565307 TGGCCATATTTGAGTCCATTCC 58.435 45.455 0.00 0.00 0.00 3.01
332 333 5.796424 AATGGCCATATTTGAGTCCATTC 57.204 39.130 21.15 0.00 39.34 2.67
333 334 5.163280 CCAAATGGCCATATTTGAGTCCATT 60.163 40.000 26.46 8.85 46.13 3.16
334 335 4.345837 CCAAATGGCCATATTTGAGTCCAT 59.654 41.667 26.46 3.09 46.13 3.41
335 336 3.705579 CCAAATGGCCATATTTGAGTCCA 59.294 43.478 26.46 0.00 46.13 4.02
336 337 4.326504 CCAAATGGCCATATTTGAGTCC 57.673 45.455 26.46 0.00 46.13 3.85
350 351 2.332063 ACTATGACGAGGCCAAATGG 57.668 50.000 5.01 0.00 38.53 3.16
351 352 4.271049 CAGTTACTATGACGAGGCCAAATG 59.729 45.833 5.01 0.00 0.00 2.32
352 353 4.081087 ACAGTTACTATGACGAGGCCAAAT 60.081 41.667 5.01 0.00 0.00 2.32
353 354 3.259876 ACAGTTACTATGACGAGGCCAAA 59.740 43.478 5.01 0.00 0.00 3.28
354 355 2.829720 ACAGTTACTATGACGAGGCCAA 59.170 45.455 5.01 0.00 0.00 4.52
355 356 2.165641 CACAGTTACTATGACGAGGCCA 59.834 50.000 5.01 0.00 0.00 5.36
356 357 2.810650 CACAGTTACTATGACGAGGCC 58.189 52.381 0.00 0.00 0.00 5.19
357 358 2.194271 GCACAGTTACTATGACGAGGC 58.806 52.381 0.00 0.00 0.00 4.70
358 359 3.503827 TGCACAGTTACTATGACGAGG 57.496 47.619 0.00 0.00 0.00 4.63
359 360 3.798878 CCATGCACAGTTACTATGACGAG 59.201 47.826 0.00 0.00 0.00 4.18
360 361 3.445805 TCCATGCACAGTTACTATGACGA 59.554 43.478 0.00 0.00 0.00 4.20
361 362 3.551890 GTCCATGCACAGTTACTATGACG 59.448 47.826 0.00 0.00 0.00 4.35
362 363 4.759782 AGTCCATGCACAGTTACTATGAC 58.240 43.478 0.00 0.00 0.00 3.06
363 364 5.891551 TCTAGTCCATGCACAGTTACTATGA 59.108 40.000 0.00 0.00 0.00 2.15
364 365 6.149129 TCTAGTCCATGCACAGTTACTATG 57.851 41.667 0.00 0.00 0.00 2.23
365 366 5.303078 CCTCTAGTCCATGCACAGTTACTAT 59.697 44.000 0.00 0.00 0.00 2.12
366 367 4.645136 CCTCTAGTCCATGCACAGTTACTA 59.355 45.833 0.00 0.00 0.00 1.82
367 368 3.449018 CCTCTAGTCCATGCACAGTTACT 59.551 47.826 0.00 0.00 0.00 2.24
368 369 3.786635 CCTCTAGTCCATGCACAGTTAC 58.213 50.000 0.00 0.00 0.00 2.50
369 370 2.168521 GCCTCTAGTCCATGCACAGTTA 59.831 50.000 0.00 0.00 0.00 2.24
370 371 1.065854 GCCTCTAGTCCATGCACAGTT 60.066 52.381 0.00 0.00 0.00 3.16
371 372 0.539051 GCCTCTAGTCCATGCACAGT 59.461 55.000 0.00 0.00 0.00 3.55
372 373 0.538584 TGCCTCTAGTCCATGCACAG 59.461 55.000 0.00 0.00 0.00 3.66
373 374 0.983467 TTGCCTCTAGTCCATGCACA 59.017 50.000 0.00 0.00 0.00 4.57
374 375 2.113860 TTTGCCTCTAGTCCATGCAC 57.886 50.000 0.00 0.00 0.00 4.57
375 376 2.040278 AGTTTTGCCTCTAGTCCATGCA 59.960 45.455 0.00 0.00 0.00 3.96
376 377 2.421424 CAGTTTTGCCTCTAGTCCATGC 59.579 50.000 0.00 0.00 0.00 4.06
377 378 3.937706 CTCAGTTTTGCCTCTAGTCCATG 59.062 47.826 0.00 0.00 0.00 3.66
378 379 3.620966 GCTCAGTTTTGCCTCTAGTCCAT 60.621 47.826 0.00 0.00 0.00 3.41
379 380 2.289694 GCTCAGTTTTGCCTCTAGTCCA 60.290 50.000 0.00 0.00 0.00 4.02
380 381 2.289694 TGCTCAGTTTTGCCTCTAGTCC 60.290 50.000 0.00 0.00 0.00 3.85
381 382 2.739379 GTGCTCAGTTTTGCCTCTAGTC 59.261 50.000 0.00 0.00 0.00 2.59
382 383 2.104792 TGTGCTCAGTTTTGCCTCTAGT 59.895 45.455 0.00 0.00 0.00 2.57
383 384 2.771089 TGTGCTCAGTTTTGCCTCTAG 58.229 47.619 0.00 0.00 0.00 2.43
384 385 2.928801 TGTGCTCAGTTTTGCCTCTA 57.071 45.000 0.00 0.00 0.00 2.43
385 386 2.057137 TTGTGCTCAGTTTTGCCTCT 57.943 45.000 0.00 0.00 0.00 3.69
386 387 3.311966 GAATTGTGCTCAGTTTTGCCTC 58.688 45.455 0.00 0.00 0.00 4.70
387 388 2.287788 CGAATTGTGCTCAGTTTTGCCT 60.288 45.455 0.00 0.00 0.00 4.75
388 389 2.053627 CGAATTGTGCTCAGTTTTGCC 58.946 47.619 0.00 0.00 0.00 4.52
389 390 1.453148 GCGAATTGTGCTCAGTTTTGC 59.547 47.619 8.90 8.90 0.00 3.68
390 391 2.730069 TGCGAATTGTGCTCAGTTTTG 58.270 42.857 0.00 0.00 0.00 2.44
391 392 3.254166 AGATGCGAATTGTGCTCAGTTTT 59.746 39.130 0.00 0.00 0.00 2.43
392 393 2.816087 AGATGCGAATTGTGCTCAGTTT 59.184 40.909 0.00 0.00 0.00 2.66
393 394 2.161012 CAGATGCGAATTGTGCTCAGTT 59.839 45.455 0.00 0.00 0.00 3.16
394 395 1.736126 CAGATGCGAATTGTGCTCAGT 59.264 47.619 0.00 0.00 0.00 3.41
395 396 2.004733 TCAGATGCGAATTGTGCTCAG 58.995 47.619 0.00 0.00 0.00 3.35
396 397 2.004733 CTCAGATGCGAATTGTGCTCA 58.995 47.619 0.00 0.00 0.00 4.26
397 398 1.329906 CCTCAGATGCGAATTGTGCTC 59.670 52.381 0.00 0.00 0.00 4.26
398 399 1.376543 CCTCAGATGCGAATTGTGCT 58.623 50.000 0.00 0.00 0.00 4.40
399 400 0.379669 CCCTCAGATGCGAATTGTGC 59.620 55.000 0.00 0.00 0.00 4.57
400 401 0.379669 GCCCTCAGATGCGAATTGTG 59.620 55.000 0.00 0.00 0.00 3.33
401 402 0.035152 TGCCCTCAGATGCGAATTGT 60.035 50.000 0.00 0.00 0.00 2.71
402 403 1.097232 TTGCCCTCAGATGCGAATTG 58.903 50.000 0.00 0.00 0.00 2.32
403 404 1.838112 TTTGCCCTCAGATGCGAATT 58.162 45.000 0.00 0.00 0.00 2.17
404 405 1.474077 GTTTTGCCCTCAGATGCGAAT 59.526 47.619 0.00 0.00 31.25 3.34
405 406 0.881118 GTTTTGCCCTCAGATGCGAA 59.119 50.000 0.00 0.00 0.00 4.70
406 407 0.036732 AGTTTTGCCCTCAGATGCGA 59.963 50.000 0.00 0.00 0.00 5.10
407 408 0.169672 CAGTTTTGCCCTCAGATGCG 59.830 55.000 0.00 0.00 0.00 4.73
408 409 1.471684 CTCAGTTTTGCCCTCAGATGC 59.528 52.381 0.00 0.00 0.00 3.91
409 410 1.471684 GCTCAGTTTTGCCCTCAGATG 59.528 52.381 0.00 0.00 0.00 2.90
410 411 1.074405 TGCTCAGTTTTGCCCTCAGAT 59.926 47.619 0.00 0.00 0.00 2.90
411 412 0.473755 TGCTCAGTTTTGCCCTCAGA 59.526 50.000 0.00 0.00 0.00 3.27
412 413 0.595095 GTGCTCAGTTTTGCCCTCAG 59.405 55.000 0.00 0.00 0.00 3.35
413 414 0.106769 TGTGCTCAGTTTTGCCCTCA 60.107 50.000 0.00 0.00 0.00 3.86
414 415 0.312102 GTGTGCTCAGTTTTGCCCTC 59.688 55.000 0.00 0.00 0.00 4.30
415 416 1.447317 CGTGTGCTCAGTTTTGCCCT 61.447 55.000 0.00 0.00 0.00 5.19
416 417 1.008538 CGTGTGCTCAGTTTTGCCC 60.009 57.895 0.00 0.00 0.00 5.36
417 418 1.008538 CCGTGTGCTCAGTTTTGCC 60.009 57.895 0.00 0.00 0.00 4.52
418 419 0.317020 GTCCGTGTGCTCAGTTTTGC 60.317 55.000 0.00 0.00 0.00 3.68
419 420 1.013596 TGTCCGTGTGCTCAGTTTTG 58.986 50.000 0.00 0.00 0.00 2.44
420 421 1.014352 GTGTCCGTGTGCTCAGTTTT 58.986 50.000 0.00 0.00 0.00 2.43
421 422 0.814010 GGTGTCCGTGTGCTCAGTTT 60.814 55.000 0.00 0.00 0.00 2.66
422 423 1.227556 GGTGTCCGTGTGCTCAGTT 60.228 57.895 0.00 0.00 0.00 3.16
423 424 2.421739 GGTGTCCGTGTGCTCAGT 59.578 61.111 0.00 0.00 0.00 3.41
424 425 1.956170 GTGGTGTCCGTGTGCTCAG 60.956 63.158 0.00 0.00 0.00 3.35
425 426 2.108157 GTGGTGTCCGTGTGCTCA 59.892 61.111 0.00 0.00 0.00 4.26
426 427 1.956170 CAGTGGTGTCCGTGTGCTC 60.956 63.158 0.00 0.00 0.00 4.26
427 428 2.108976 CAGTGGTGTCCGTGTGCT 59.891 61.111 0.00 0.00 0.00 4.40
428 429 1.956170 CTCAGTGGTGTCCGTGTGC 60.956 63.158 0.00 0.00 0.00 4.57
429 430 1.300931 CCTCAGTGGTGTCCGTGTG 60.301 63.158 0.00 0.00 0.00 3.82
430 431 2.507854 CCCTCAGTGGTGTCCGTGT 61.508 63.158 0.00 0.00 0.00 4.49
431 432 2.343758 CCCTCAGTGGTGTCCGTG 59.656 66.667 0.00 0.00 0.00 4.94
432 433 3.626924 GCCCTCAGTGGTGTCCGT 61.627 66.667 0.00 0.00 0.00 4.69
433 434 2.674563 TTTGCCCTCAGTGGTGTCCG 62.675 60.000 0.00 0.00 0.00 4.79
434 435 0.467290 TTTTGCCCTCAGTGGTGTCC 60.467 55.000 0.00 0.00 0.00 4.02
435 436 0.954452 CTTTTGCCCTCAGTGGTGTC 59.046 55.000 0.00 0.00 0.00 3.67
436 437 0.468029 CCTTTTGCCCTCAGTGGTGT 60.468 55.000 0.00 0.00 0.00 4.16
437 438 0.178992 TCCTTTTGCCCTCAGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
438 439 0.779997 ATCCTTTTGCCCTCAGTGGT 59.220 50.000 0.00 0.00 0.00 4.16
439 440 2.806945 TATCCTTTTGCCCTCAGTGG 57.193 50.000 0.00 0.00 0.00 4.00
440 441 6.405842 GGTTAATTATCCTTTTGCCCTCAGTG 60.406 42.308 5.46 0.00 0.00 3.66
441 442 5.656859 GGTTAATTATCCTTTTGCCCTCAGT 59.343 40.000 5.46 0.00 0.00 3.41
442 443 5.069119 GGGTTAATTATCCTTTTGCCCTCAG 59.931 44.000 11.51 0.00 0.00 3.35
443 444 4.959839 GGGTTAATTATCCTTTTGCCCTCA 59.040 41.667 11.51 0.00 0.00 3.86
444 445 5.208890 AGGGTTAATTATCCTTTTGCCCTC 58.791 41.667 11.51 0.00 39.57 4.30
445 446 5.220872 AGGGTTAATTATCCTTTTGCCCT 57.779 39.130 11.51 0.00 38.99 5.19
446 447 5.661312 AGAAGGGTTAATTATCCTTTTGCCC 59.339 40.000 16.83 8.05 40.61 5.36
447 448 6.791867 AGAAGGGTTAATTATCCTTTTGCC 57.208 37.500 16.83 8.30 40.61 4.52
448 449 8.094548 ACAAAGAAGGGTTAATTATCCTTTTGC 58.905 33.333 19.57 11.17 40.61 3.68
452 453 9.475620 CCTTACAAAGAAGGGTTAATTATCCTT 57.524 33.333 16.11 16.11 42.12 3.36
508 509 4.750460 GCATCTGGGCAATGCATG 57.250 55.556 7.79 3.08 46.93 4.06
512 513 1.735376 GCCTCTGCATCTGGGCAATG 61.735 60.000 12.40 0.00 44.40 2.82
513 514 1.455217 GCCTCTGCATCTGGGCAAT 60.455 57.895 12.40 0.00 44.40 3.56
514 515 2.044650 GCCTCTGCATCTGGGCAA 60.045 61.111 12.40 0.00 44.40 4.52
515 516 4.119363 GGCCTCTGCATCTGGGCA 62.119 66.667 17.30 0.00 45.68 5.36
517 518 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
518 519 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
519 520 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
525 526 3.330720 AAAGACCCCCGGCCTCTG 61.331 66.667 0.00 0.00 0.00 3.35
526 527 3.009714 GAAAGACCCCCGGCCTCT 61.010 66.667 0.00 0.00 0.00 3.69
527 528 3.009714 AGAAAGACCCCCGGCCTC 61.010 66.667 0.00 0.00 0.00 4.70
528 529 3.009714 GAGAAAGACCCCCGGCCT 61.010 66.667 0.00 0.00 0.00 5.19
529 530 4.111053 GGAGAAAGACCCCCGGCC 62.111 72.222 0.00 0.00 0.00 6.13
530 531 2.138453 AAAGGAGAAAGACCCCCGGC 62.138 60.000 0.00 0.00 0.00 6.13
531 532 0.404426 AAAAGGAGAAAGACCCCCGG 59.596 55.000 0.00 0.00 0.00 5.73
532 533 2.287977 AAAAAGGAGAAAGACCCCCG 57.712 50.000 0.00 0.00 0.00 5.73
533 534 6.488769 TTTTTAAAAAGGAGAAAGACCCCC 57.511 37.500 9.31 0.00 0.00 5.40
553 554 5.837437 TCTTCTTTGTGTGTGTGTGTTTTT 58.163 33.333 0.00 0.00 0.00 1.94
554 555 5.446143 TCTTCTTTGTGTGTGTGTGTTTT 57.554 34.783 0.00 0.00 0.00 2.43
555 556 5.446143 TTCTTCTTTGTGTGTGTGTGTTT 57.554 34.783 0.00 0.00 0.00 2.83
556 557 5.446143 TTTCTTCTTTGTGTGTGTGTGTT 57.554 34.783 0.00 0.00 0.00 3.32
557 558 5.446143 TTTTCTTCTTTGTGTGTGTGTGT 57.554 34.783 0.00 0.00 0.00 3.72
558 559 5.920273 AGTTTTTCTTCTTTGTGTGTGTGTG 59.080 36.000 0.00 0.00 0.00 3.82
559 560 6.084326 AGTTTTTCTTCTTTGTGTGTGTGT 57.916 33.333 0.00 0.00 0.00 3.72
560 561 7.253750 GCATAGTTTTTCTTCTTTGTGTGTGTG 60.254 37.037 0.00 0.00 0.00 3.82
561 562 6.751888 GCATAGTTTTTCTTCTTTGTGTGTGT 59.248 34.615 0.00 0.00 0.00 3.72
562 563 6.075415 CGCATAGTTTTTCTTCTTTGTGTGTG 60.075 38.462 0.00 0.00 0.00 3.82
563 564 5.971202 CGCATAGTTTTTCTTCTTTGTGTGT 59.029 36.000 0.00 0.00 0.00 3.72
564 565 5.971202 ACGCATAGTTTTTCTTCTTTGTGTG 59.029 36.000 0.00 0.00 35.97 3.82
565 566 6.131544 ACGCATAGTTTTTCTTCTTTGTGT 57.868 33.333 0.00 0.00 33.85 3.72
566 567 6.074888 CCAACGCATAGTTTTTCTTCTTTGTG 60.075 38.462 0.00 0.00 42.02 3.33
567 568 5.977129 CCAACGCATAGTTTTTCTTCTTTGT 59.023 36.000 0.00 0.00 42.02 2.83
568 569 5.977129 ACCAACGCATAGTTTTTCTTCTTTG 59.023 36.000 0.00 0.00 42.02 2.77
569 570 6.039382 AGACCAACGCATAGTTTTTCTTCTTT 59.961 34.615 0.00 0.00 42.02 2.52
570 571 5.531287 AGACCAACGCATAGTTTTTCTTCTT 59.469 36.000 0.00 0.00 42.02 2.52
571 572 5.063880 AGACCAACGCATAGTTTTTCTTCT 58.936 37.500 0.00 0.00 42.02 2.85
572 573 5.358298 AGACCAACGCATAGTTTTTCTTC 57.642 39.130 0.00 0.00 42.02 2.87
573 574 5.767816 AAGACCAACGCATAGTTTTTCTT 57.232 34.783 0.00 0.00 42.02 2.52
574 575 5.767816 AAAGACCAACGCATAGTTTTTCT 57.232 34.783 0.00 0.00 42.02 2.52
575 576 5.332280 GCAAAAGACCAACGCATAGTTTTTC 60.332 40.000 0.00 0.00 42.02 2.29
576 577 4.506288 GCAAAAGACCAACGCATAGTTTTT 59.494 37.500 0.00 0.00 42.02 1.94
577 578 4.048504 GCAAAAGACCAACGCATAGTTTT 58.951 39.130 0.00 0.00 42.02 2.43
578 579 3.317993 AGCAAAAGACCAACGCATAGTTT 59.682 39.130 0.00 0.00 42.02 2.66
592 593 2.867624 AGACAGATTGGCAGCAAAAGA 58.132 42.857 0.00 0.00 0.00 2.52
601 602 1.523758 ACCGTCAAAGACAGATTGGC 58.476 50.000 0.00 0.00 32.09 4.52
602 603 3.058914 GTGAACCGTCAAAGACAGATTGG 60.059 47.826 0.00 0.00 34.87 3.16
706 742 2.823147 GCTGCTGCTGCTGGGTAG 60.823 66.667 22.10 9.52 40.48 3.18
707 743 3.617143 CTGCTGCTGCTGCTGGGTA 62.617 63.158 27.67 10.07 40.48 3.69
761 797 1.358759 GTCAAGTTGTTGGGTGCGG 59.641 57.895 2.11 0.00 34.09 5.69
836 887 1.944676 GCGACCGAACTATCCAGCG 60.945 63.158 0.00 0.00 0.00 5.18
847 898 0.322636 AAGAAGAGAGGAGCGACCGA 60.323 55.000 0.00 0.00 44.74 4.69
851 902 1.740585 CGAAGAAGAAGAGAGGAGCGA 59.259 52.381 0.00 0.00 0.00 4.93
904 955 4.787598 CAAGTAGTGACCTTTGATGTTGC 58.212 43.478 0.00 0.00 0.00 4.17
1017 1070 4.421131 AGAAGAGAAGGGAGCAGACTAAA 58.579 43.478 0.00 0.00 0.00 1.85
1059 1112 2.615447 TGAGCAGTCAAACTTGAGCAAG 59.385 45.455 8.60 8.60 43.79 4.01
1209 1278 9.140874 GGACTATACTAGTAACAAATAGGTGGT 57.859 37.037 6.70 0.00 39.59 4.16
1281 1351 3.741344 CCACGATAGCCTGTTTATAGTGC 59.259 47.826 0.00 0.00 42.67 4.40
1395 1482 7.231467 AGGGAGTAGATCTAGATTGAGAAGAC 58.769 42.308 6.70 0.00 0.00 3.01
1397 1484 6.371548 CGAGGGAGTAGATCTAGATTGAGAAG 59.628 46.154 6.70 0.00 0.00 2.85
1514 1614 6.169094 ACGGATATCAGAATCAGGCAATAAG 58.831 40.000 10.01 0.00 0.00 1.73
1668 1768 3.554324 GTCACACGTCAGAAAAGTAGCAA 59.446 43.478 0.00 0.00 0.00 3.91
1883 1985 2.620585 CCTATGACTCTGCATCACTCGA 59.379 50.000 0.00 0.00 0.00 4.04
1938 2044 2.808906 AGAAAAGGGGTATGCAGACC 57.191 50.000 22.56 22.56 38.93 3.85
1988 2098 2.289631 TGATTGAGACGTCCACTGCAAT 60.290 45.455 13.01 13.70 0.00 3.56
2628 2758 7.255312 CGGAATCATATAGGAGTATCAGGTAGC 60.255 44.444 0.00 0.00 36.25 3.58
2669 2799 9.167311 CAAGGAATCAACTTTGCTACTATTAGT 57.833 33.333 1.30 1.30 0.00 2.24
2670 2800 8.616076 CCAAGGAATCAACTTTGCTACTATTAG 58.384 37.037 0.00 0.00 0.00 1.73
2671 2801 8.107095 ACCAAGGAATCAACTTTGCTACTATTA 58.893 33.333 0.00 0.00 0.00 0.98
2672 2802 6.948309 ACCAAGGAATCAACTTTGCTACTATT 59.052 34.615 0.00 0.00 0.00 1.73
2673 2803 6.485171 ACCAAGGAATCAACTTTGCTACTAT 58.515 36.000 0.00 0.00 0.00 2.12
2674 2804 5.876357 ACCAAGGAATCAACTTTGCTACTA 58.124 37.500 0.00 0.00 0.00 1.82
2889 3940 7.225538 ACCACTGATATTCTGAAATAAGAAGCG 59.774 37.037 0.00 0.00 39.47 4.68
2897 3948 3.879295 CGCCACCACTGATATTCTGAAAT 59.121 43.478 0.00 0.00 0.00 2.17
3199 4250 1.837439 ACAAAGGATGTGCCGGAGATA 59.163 47.619 5.05 0.00 41.93 1.98
3317 4368 1.208052 CACCCTCACAGACGGATCATT 59.792 52.381 0.00 0.00 0.00 2.57
3676 4739 0.249573 CCCGGCCGTGAATAATACGT 60.250 55.000 26.12 0.00 39.76 3.57
4327 5393 2.213499 CGAACTTGCCTTGTCTTCAGT 58.787 47.619 0.00 0.00 0.00 3.41
4924 5990 3.091545 CCCTATGTGGCAGTTGTCAAAT 58.908 45.455 0.00 0.00 31.55 2.32
5092 6188 1.136329 ATGGGTGGAGGACAAGCAGT 61.136 55.000 0.00 0.00 0.00 4.40
5635 6731 0.935898 CATCAAGCTCGTCTGGATGC 59.064 55.000 10.35 0.00 44.04 3.91
6295 7414 3.863142 AGCTTCAGTTTCATGATTGCC 57.137 42.857 0.00 0.00 32.72 4.52
6534 7656 4.699257 CAGGAGAGTGAAGCTGCTTATTTT 59.301 41.667 15.95 1.37 31.22 1.82
6535 7657 4.260170 CAGGAGAGTGAAGCTGCTTATTT 58.740 43.478 15.95 3.27 31.22 1.40
6730 7853 0.819582 CATTGGCCCAGATGGTTGTC 59.180 55.000 0.00 0.00 36.04 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.