Multiple sequence alignment - TraesCS2D01G234600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G234600 chr2D 100.000 3411 0 0 1 3411 216326095 216329505 0.000000e+00 6300.0
1 TraesCS2D01G234600 chr2D 100.000 2055 0 0 3767 5821 216329861 216331915 0.000000e+00 3795.0
2 TraesCS2D01G234600 chr2D 90.576 191 11 4 40 227 626271198 626271012 4.510000e-61 246.0
3 TraesCS2D01G234600 chr2D 100.000 82 0 0 1857 1938 216327869 216327950 1.010000e-32 152.0
4 TraesCS2D01G234600 chr2D 100.000 82 0 0 1775 1856 216327951 216328032 1.010000e-32 152.0
5 TraesCS2D01G234600 chr2A 95.565 1443 39 11 1857 3287 304982001 304980572 0.000000e+00 2287.0
6 TraesCS2D01G234600 chr2A 91.941 1365 68 25 3778 5111 304980106 304978753 0.000000e+00 1873.0
7 TraesCS2D01G234600 chr2A 96.467 1019 26 5 839 1856 304982929 304981920 0.000000e+00 1674.0
8 TraesCS2D01G234600 chr2A 84.767 558 48 15 5119 5675 304978697 304978176 5.170000e-145 525.0
9 TraesCS2D01G234600 chr2A 97.600 125 3 0 3287 3411 304980259 304980135 1.270000e-51 215.0
10 TraesCS2D01G234600 chr2B 95.112 1207 47 6 3770 4966 332334628 332335832 0.000000e+00 1892.0
11 TraesCS2D01G234600 chr2B 94.752 1010 27 9 864 1856 332331498 332332498 0.000000e+00 1548.0
12 TraesCS2D01G234600 chr2B 97.769 762 14 2 1857 2615 332332417 332333178 0.000000e+00 1310.0
13 TraesCS2D01G234600 chr2B 91.677 793 27 19 2597 3383 332333196 332333955 0.000000e+00 1062.0
14 TraesCS2D01G234600 chr2B 90.944 519 44 2 5154 5672 332335919 332336434 0.000000e+00 695.0
15 TraesCS2D01G234600 chr2B 97.260 73 2 0 5165 5237 572553315 572553387 2.200000e-24 124.0
16 TraesCS2D01G234600 chr1D 92.206 834 49 5 4 835 193661736 193660917 0.000000e+00 1166.0
17 TraesCS2D01G234600 chr1D 91.692 662 42 7 181 838 470916226 470915574 0.000000e+00 905.0
18 TraesCS2D01G234600 chr3D 93.702 778 36 10 43 815 608919197 608919966 0.000000e+00 1153.0
19 TraesCS2D01G234600 chr5A 89.667 871 52 15 1 847 651525632 651524776 0.000000e+00 1075.0
20 TraesCS2D01G234600 chr3A 89.461 835 59 4 4 838 140966286 140967091 0.000000e+00 1027.0
21 TraesCS2D01G234600 chr3A 95.072 629 26 5 4 631 21271956 21271332 0.000000e+00 985.0
22 TraesCS2D01G234600 chr3A 91.282 195 16 1 649 843 21271099 21270906 1.240000e-66 265.0
23 TraesCS2D01G234600 chr3A 79.856 139 22 5 383 518 38335724 38335859 4.800000e-16 97.1
24 TraesCS2D01G234600 chr7D 93.902 574 31 3 267 838 568816017 568815446 0.000000e+00 863.0
25 TraesCS2D01G234600 chr7D 93.305 239 6 5 3 231 568816258 568816020 1.550000e-90 344.0
26 TraesCS2D01G234600 chr7D 85.586 111 11 5 5131 5236 26835610 26835720 1.710000e-20 111.0
27 TraesCS2D01G234600 chr7D 89.655 87 8 1 5152 5237 428711455 428711369 6.170000e-20 110.0
28 TraesCS2D01G234600 chr7D 97.143 35 1 0 5072 5106 82851618 82851584 6.300000e-05 60.2
29 TraesCS2D01G234600 chr6A 95.066 304 12 3 49 351 121884624 121884925 5.280000e-130 475.0
30 TraesCS2D01G234600 chr6A 97.015 67 2 0 1 67 121884554 121884620 4.770000e-21 113.0
31 TraesCS2D01G234600 chr3B 92.606 284 20 1 559 842 752208074 752207792 1.950000e-109 407.0
32 TraesCS2D01G234600 chr3B 90.104 192 11 5 40 227 125545192 125545005 5.830000e-60 243.0
33 TraesCS2D01G234600 chr3B 88.710 62 5 2 5 65 39673219 39673279 2.250000e-09 75.0
34 TraesCS2D01G234600 chr4A 92.391 276 20 1 564 838 27191863 27191588 5.470000e-105 392.0
35 TraesCS2D01G234600 chr4A 91.459 281 21 3 559 838 713105392 713105114 3.290000e-102 383.0
36 TraesCS2D01G234600 chr4A 91.743 109 9 0 1197 1305 680370195 680370303 1.010000e-32 152.0
37 TraesCS2D01G234600 chr4D 91.743 109 9 0 1197 1305 473809695 473809803 1.010000e-32 152.0
38 TraesCS2D01G234600 chr4B 91.743 109 9 0 1197 1305 596372806 596372914 1.010000e-32 152.0
39 TraesCS2D01G234600 chr4B 86.885 122 11 3 5114 5234 476352787 476352670 1.320000e-26 132.0
40 TraesCS2D01G234600 chr6D 95.714 70 2 1 5166 5234 86805716 86805785 1.710000e-20 111.0
41 TraesCS2D01G234600 chr6D 83.200 125 18 3 5118 5240 465955930 465956053 1.710000e-20 111.0
42 TraesCS2D01G234600 chr6D 86.316 95 11 2 5152 5245 131608815 131608722 1.030000e-17 102.0
43 TraesCS2D01G234600 chr1B 91.837 49 4 0 5064 5112 485672690 485672738 1.050000e-07 69.4
44 TraesCS2D01G234600 chr7A 97.059 34 1 0 5064 5097 459622979 459622946 2.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G234600 chr2D 216326095 216331915 5820 False 2599.75 6300 100.0000 1 5821 4 chr2D.!!$F1 5820
1 TraesCS2D01G234600 chr2A 304978176 304982929 4753 True 1314.80 2287 93.2680 839 5675 5 chr2A.!!$R1 4836
2 TraesCS2D01G234600 chr2B 332331498 332336434 4936 False 1301.40 1892 94.0508 864 5672 5 chr2B.!!$F2 4808
3 TraesCS2D01G234600 chr1D 193660917 193661736 819 True 1166.00 1166 92.2060 4 835 1 chr1D.!!$R1 831
4 TraesCS2D01G234600 chr1D 470915574 470916226 652 True 905.00 905 91.6920 181 838 1 chr1D.!!$R2 657
5 TraesCS2D01G234600 chr3D 608919197 608919966 769 False 1153.00 1153 93.7020 43 815 1 chr3D.!!$F1 772
6 TraesCS2D01G234600 chr5A 651524776 651525632 856 True 1075.00 1075 89.6670 1 847 1 chr5A.!!$R1 846
7 TraesCS2D01G234600 chr3A 140966286 140967091 805 False 1027.00 1027 89.4610 4 838 1 chr3A.!!$F2 834
8 TraesCS2D01G234600 chr3A 21270906 21271956 1050 True 625.00 985 93.1770 4 843 2 chr3A.!!$R1 839
9 TraesCS2D01G234600 chr7D 568815446 568816258 812 True 603.50 863 93.6035 3 838 2 chr7D.!!$R3 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 282 0.250467 ACCAATTGACGACTGCAGCT 60.250 50.0 15.27 0.23 0.00 4.24 F
238 283 0.445436 CCAATTGACGACTGCAGCTC 59.555 55.0 15.27 9.81 0.00 4.09 F
1869 2218 0.622665 ATGCCAGCCTAGCTTTGACT 59.377 50.0 0.00 0.00 36.40 3.41 F
1890 2239 0.179034 GCTGGAGAATTCTGGCGGAT 60.179 55.0 14.00 0.00 0.00 4.18 F
1892 2241 0.911769 TGGAGAATTCTGGCGGATGT 59.088 50.0 14.00 0.00 0.00 3.06 F
3233 3638 1.148310 ACAATTCTTCGCAGACCACG 58.852 50.0 0.00 0.00 34.32 4.94 F
3368 4086 1.560505 ATTTGTCCCCACATTCCAGC 58.439 50.0 0.00 0.00 30.55 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1849 0.033601 ATCGCACCAAGCCCCAAATA 60.034 50.000 0.00 0.00 41.38 1.40 R
1871 2220 0.179034 ATCCGCCAGAATTCTCCAGC 60.179 55.000 4.57 8.19 0.00 4.85 R
3245 3650 0.811915 AGTGAGACGGTGAAGGATCG 59.188 55.000 0.00 0.00 0.00 3.69 R
3836 4840 1.156736 CGTTGCCTTACTTGACCCAG 58.843 55.000 0.00 0.00 0.00 4.45 R
3884 4888 8.491958 ACTCTTTTTCCCTTAACTTCTTGTCTA 58.508 33.333 0.00 0.00 0.00 2.59 R
4613 5626 0.032678 ACTCAACTGCCGTGAGACAG 59.967 55.000 13.55 0.00 39.86 3.51 R
5086 6136 0.725117 GCGGTGTTACTACATGCCAC 59.275 55.000 0.00 0.00 36.50 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 162 3.444034 TGGTTCACATCCAAAAACAACGA 59.556 39.130 0.00 0.00 31.50 3.85
234 279 3.129462 TGAAAAACCAATTGACGACTGCA 59.871 39.130 7.12 0.00 0.00 4.41
235 280 3.354089 AAAACCAATTGACGACTGCAG 57.646 42.857 13.48 13.48 0.00 4.41
236 281 0.593128 AACCAATTGACGACTGCAGC 59.407 50.000 15.27 5.81 0.00 5.25
237 282 0.250467 ACCAATTGACGACTGCAGCT 60.250 50.000 15.27 0.23 0.00 4.24
238 283 0.445436 CCAATTGACGACTGCAGCTC 59.555 55.000 15.27 9.81 0.00 4.09
239 284 1.150827 CAATTGACGACTGCAGCTCA 58.849 50.000 15.27 9.44 0.00 4.26
240 285 1.136141 CAATTGACGACTGCAGCTCAC 60.136 52.381 15.27 4.10 0.00 3.51
241 286 0.671781 ATTGACGACTGCAGCTCACC 60.672 55.000 15.27 5.93 0.00 4.02
242 287 2.433318 GACGACTGCAGCTCACCC 60.433 66.667 15.27 0.00 0.00 4.61
243 288 4.363990 ACGACTGCAGCTCACCCG 62.364 66.667 15.27 10.27 0.00 5.28
265 310 1.439644 GCCGGAAAGTTGCAACCAA 59.560 52.632 25.62 0.00 0.00 3.67
509 603 3.429272 CCGGTGATGTAATTTGCTGCAAT 60.429 43.478 16.77 4.73 0.00 3.56
685 1016 1.494960 GAGAGAGATGGGGCTGAAGT 58.505 55.000 0.00 0.00 0.00 3.01
735 1066 2.597510 GTTGTGTGAGGCCCACCC 60.598 66.667 18.24 10.04 45.09 4.61
985 1318 1.091537 GCTAATAAACGGCAGGCACA 58.908 50.000 0.00 0.00 0.00 4.57
1116 1449 3.798511 CCGCCCTTCCCCCTTCTC 61.799 72.222 0.00 0.00 0.00 2.87
1117 1450 3.798511 CGCCCTTCCCCCTTCTCC 61.799 72.222 0.00 0.00 0.00 3.71
1118 1451 2.614013 GCCCTTCCCCCTTCTCCA 60.614 66.667 0.00 0.00 0.00 3.86
1119 1452 2.985116 GCCCTTCCCCCTTCTCCAC 61.985 68.421 0.00 0.00 0.00 4.02
1158 1491 1.616187 GGACCCGATCCCGATCTGATA 60.616 57.143 3.35 0.00 42.46 2.15
1515 1849 3.144506 CATGTGTGTCCAGCTCTTCTTT 58.855 45.455 0.00 0.00 0.00 2.52
1529 1863 4.089361 CTCTTCTTTATTTGGGGCTTGGT 58.911 43.478 0.00 0.00 0.00 3.67
1560 1894 6.878923 CCATGGTTACAGTATTTGAGACTTGA 59.121 38.462 2.57 0.00 0.00 3.02
1736 2085 0.833287 ATGGTGTCTTCCCAGGATCG 59.167 55.000 0.00 0.00 34.92 3.69
1740 2089 0.904865 TGTCTTCCCAGGATCGCAGT 60.905 55.000 0.00 0.00 0.00 4.40
1765 2114 2.424474 TGGTGACAAATGTGCCCAC 58.576 52.632 0.00 1.45 37.44 4.61
1823 2172 3.074412 GGCGGATGTAATGTAGGGAATG 58.926 50.000 0.00 0.00 0.00 2.67
1824 2173 3.244422 GGCGGATGTAATGTAGGGAATGA 60.244 47.826 0.00 0.00 0.00 2.57
1825 2174 4.565652 GGCGGATGTAATGTAGGGAATGAT 60.566 45.833 0.00 0.00 0.00 2.45
1826 2175 5.338056 GGCGGATGTAATGTAGGGAATGATA 60.338 44.000 0.00 0.00 0.00 2.15
1827 2176 5.812642 GCGGATGTAATGTAGGGAATGATAG 59.187 44.000 0.00 0.00 0.00 2.08
1828 2177 5.812642 CGGATGTAATGTAGGGAATGATAGC 59.187 44.000 0.00 0.00 0.00 2.97
1829 2178 6.351371 CGGATGTAATGTAGGGAATGATAGCT 60.351 42.308 0.00 0.00 0.00 3.32
1830 2179 7.147897 CGGATGTAATGTAGGGAATGATAGCTA 60.148 40.741 0.00 0.00 0.00 3.32
1831 2180 8.540388 GGATGTAATGTAGGGAATGATAGCTAA 58.460 37.037 0.00 0.00 0.00 3.09
1835 2184 9.517609 GTAATGTAGGGAATGATAGCTAATACG 57.482 37.037 0.00 0.00 0.00 3.06
1836 2185 7.719871 ATGTAGGGAATGATAGCTAATACGT 57.280 36.000 0.00 0.00 0.00 3.57
1837 2186 8.818622 ATGTAGGGAATGATAGCTAATACGTA 57.181 34.615 0.00 0.00 0.00 3.57
1838 2187 8.048534 TGTAGGGAATGATAGCTAATACGTAC 57.951 38.462 0.00 2.94 0.00 3.67
1839 2188 6.192234 AGGGAATGATAGCTAATACGTACG 57.808 41.667 15.01 15.01 0.00 3.67
1840 2189 5.942236 AGGGAATGATAGCTAATACGTACGA 59.058 40.000 24.41 6.04 0.00 3.43
1841 2190 6.093771 AGGGAATGATAGCTAATACGTACGAG 59.906 42.308 24.41 9.94 0.00 4.18
1842 2191 6.128063 GGGAATGATAGCTAATACGTACGAGT 60.128 42.308 24.41 6.82 0.00 4.18
1843 2192 7.303998 GGAATGATAGCTAATACGTACGAGTT 58.696 38.462 24.41 17.31 0.00 3.01
1844 2193 7.270793 GGAATGATAGCTAATACGTACGAGTTG 59.729 40.741 24.41 8.30 0.00 3.16
1845 2194 6.609237 TGATAGCTAATACGTACGAGTTGT 57.391 37.500 24.41 4.84 0.00 3.32
1846 2195 7.019774 TGATAGCTAATACGTACGAGTTGTT 57.980 36.000 24.41 6.93 0.00 2.83
1847 2196 7.475015 TGATAGCTAATACGTACGAGTTGTTT 58.525 34.615 24.41 8.08 0.00 2.83
1848 2197 7.641411 TGATAGCTAATACGTACGAGTTGTTTC 59.359 37.037 24.41 8.53 0.00 2.78
1849 2198 5.702865 AGCTAATACGTACGAGTTGTTTCA 58.297 37.500 24.41 0.04 0.00 2.69
1850 2199 6.151691 AGCTAATACGTACGAGTTGTTTCAA 58.848 36.000 24.41 0.00 0.00 2.69
1851 2200 6.810182 AGCTAATACGTACGAGTTGTTTCAAT 59.190 34.615 24.41 0.00 0.00 2.57
1852 2201 6.892951 GCTAATACGTACGAGTTGTTTCAATG 59.107 38.462 24.41 0.00 0.00 2.82
1853 2202 3.515071 ACGTACGAGTTGTTTCAATGC 57.485 42.857 24.41 0.00 0.00 3.56
1854 2203 2.222445 ACGTACGAGTTGTTTCAATGCC 59.778 45.455 24.41 0.00 0.00 4.40
1855 2204 2.222213 CGTACGAGTTGTTTCAATGCCA 59.778 45.455 10.44 0.00 0.00 4.92
1856 2205 3.664276 CGTACGAGTTGTTTCAATGCCAG 60.664 47.826 10.44 0.00 0.00 4.85
1857 2206 1.001378 ACGAGTTGTTTCAATGCCAGC 60.001 47.619 0.00 0.00 0.00 4.85
1858 2207 1.666888 CGAGTTGTTTCAATGCCAGCC 60.667 52.381 0.00 0.00 0.00 4.85
1859 2208 1.615392 GAGTTGTTTCAATGCCAGCCT 59.385 47.619 0.00 0.00 0.00 4.58
1860 2209 2.819608 GAGTTGTTTCAATGCCAGCCTA 59.180 45.455 0.00 0.00 0.00 3.93
1861 2210 2.821969 AGTTGTTTCAATGCCAGCCTAG 59.178 45.455 0.00 0.00 0.00 3.02
1862 2211 1.176527 TGTTTCAATGCCAGCCTAGC 58.823 50.000 0.00 0.00 0.00 3.42
1863 2212 1.272092 TGTTTCAATGCCAGCCTAGCT 60.272 47.619 0.00 0.00 40.77 3.32
1864 2213 1.821136 GTTTCAATGCCAGCCTAGCTT 59.179 47.619 0.00 0.00 36.40 3.74
1865 2214 2.220653 TTCAATGCCAGCCTAGCTTT 57.779 45.000 0.00 0.00 36.40 3.51
1866 2215 1.466856 TCAATGCCAGCCTAGCTTTG 58.533 50.000 4.71 4.71 43.20 2.77
1867 2216 1.004628 TCAATGCCAGCCTAGCTTTGA 59.995 47.619 8.89 8.89 46.18 2.69
1868 2217 1.133790 CAATGCCAGCCTAGCTTTGAC 59.866 52.381 5.06 0.00 44.06 3.18
1869 2218 0.622665 ATGCCAGCCTAGCTTTGACT 59.377 50.000 0.00 0.00 36.40 3.41
1870 2219 0.401738 TGCCAGCCTAGCTTTGACTT 59.598 50.000 0.00 0.00 36.40 3.01
1871 2220 0.807496 GCCAGCCTAGCTTTGACTTG 59.193 55.000 0.00 0.00 36.40 3.16
1872 2221 0.807496 CCAGCCTAGCTTTGACTTGC 59.193 55.000 0.00 0.00 36.40 4.01
1873 2222 1.612726 CCAGCCTAGCTTTGACTTGCT 60.613 52.381 0.00 0.00 36.40 3.91
1874 2223 1.467734 CAGCCTAGCTTTGACTTGCTG 59.532 52.381 0.00 0.00 40.08 4.41
1875 2224 0.807496 GCCTAGCTTTGACTTGCTGG 59.193 55.000 0.00 0.00 40.08 4.85
1876 2225 1.611673 GCCTAGCTTTGACTTGCTGGA 60.612 52.381 0.00 0.00 39.63 3.86
1877 2226 2.354259 CCTAGCTTTGACTTGCTGGAG 58.646 52.381 0.00 0.00 39.63 3.86
1878 2227 2.027745 CCTAGCTTTGACTTGCTGGAGA 60.028 50.000 0.00 0.00 39.63 3.71
1879 2228 2.645838 AGCTTTGACTTGCTGGAGAA 57.354 45.000 0.00 0.00 38.21 2.87
1880 2229 3.151912 AGCTTTGACTTGCTGGAGAAT 57.848 42.857 0.00 0.00 38.21 2.40
1881 2230 3.494332 AGCTTTGACTTGCTGGAGAATT 58.506 40.909 0.00 0.00 38.21 2.17
1882 2231 3.505293 AGCTTTGACTTGCTGGAGAATTC 59.495 43.478 0.00 0.00 38.21 2.17
1883 2232 3.505293 GCTTTGACTTGCTGGAGAATTCT 59.495 43.478 7.95 7.95 0.00 2.40
1884 2233 4.615452 GCTTTGACTTGCTGGAGAATTCTG 60.615 45.833 14.00 0.00 0.00 3.02
1885 2234 3.063510 TGACTTGCTGGAGAATTCTGG 57.936 47.619 14.00 4.11 0.00 3.86
1886 2235 1.742268 GACTTGCTGGAGAATTCTGGC 59.258 52.381 14.00 14.11 0.00 4.85
1887 2236 0.731417 CTTGCTGGAGAATTCTGGCG 59.269 55.000 14.00 1.45 0.00 5.69
1888 2237 0.677731 TTGCTGGAGAATTCTGGCGG 60.678 55.000 14.00 1.57 0.00 6.13
1889 2238 1.221840 GCTGGAGAATTCTGGCGGA 59.778 57.895 14.00 0.00 0.00 5.54
1890 2239 0.179034 GCTGGAGAATTCTGGCGGAT 60.179 55.000 14.00 0.00 0.00 4.18
1891 2240 1.590932 CTGGAGAATTCTGGCGGATG 58.409 55.000 14.00 0.00 0.00 3.51
1892 2241 0.911769 TGGAGAATTCTGGCGGATGT 59.088 50.000 14.00 0.00 0.00 3.06
1893 2242 2.103094 CTGGAGAATTCTGGCGGATGTA 59.897 50.000 14.00 0.00 0.00 2.29
1894 2243 2.503765 TGGAGAATTCTGGCGGATGTAA 59.496 45.455 14.00 0.00 0.00 2.41
1895 2244 3.136443 TGGAGAATTCTGGCGGATGTAAT 59.864 43.478 14.00 0.00 0.00 1.89
1896 2245 3.499918 GGAGAATTCTGGCGGATGTAATG 59.500 47.826 14.00 0.00 0.00 1.90
2151 2501 7.116736 TGAGCCTCTTCATATGTATATCGGTA 58.883 38.462 1.90 0.00 0.00 4.02
2168 2518 6.786967 ATCGGTATACCTACAACAGACTTT 57.213 37.500 19.68 0.00 0.00 2.66
2661 3057 5.034554 TGATTTCTGATGTCGCAAAGTTC 57.965 39.130 0.00 0.00 0.00 3.01
2687 3083 7.070571 CCAAATTTTACTGGCATTCCCCTTATA 59.929 37.037 0.00 0.00 0.00 0.98
2689 3085 9.890915 AAATTTTACTGGCATTCCCCTTATATA 57.109 29.630 0.00 0.00 0.00 0.86
2911 3310 8.857098 GTTACTAGGTCACATGTGATATCCTAA 58.143 37.037 29.44 20.66 42.18 2.69
2962 3361 7.913297 TGCAGTTCTATTGTTTTGTGTAACTTC 59.087 33.333 0.00 0.00 38.04 3.01
3055 3454 8.068977 CACTATTCTGATTATTCTGCTTTGAGC 58.931 37.037 0.00 0.00 42.82 4.26
3141 3543 1.982612 TCAGAGTTTCAGACGCATCG 58.017 50.000 0.00 0.00 0.00 3.84
3169 3571 3.653113 CGTGAATTTATCGCATGCGTTAC 59.347 43.478 36.50 22.12 38.52 2.50
3212 3617 8.609176 CAATTTTCATGGCCTTAATTGAAGATG 58.391 33.333 15.45 3.48 38.05 2.90
3233 3638 1.148310 ACAATTCTTCGCAGACCACG 58.852 50.000 0.00 0.00 34.32 4.94
3245 3650 2.476185 GCAGACCACGTGATATTTGTGC 60.476 50.000 19.30 11.60 32.32 4.57
3368 4086 1.560505 ATTTGTCCCCACATTCCAGC 58.439 50.000 0.00 0.00 30.55 4.85
3390 4108 4.083003 GCGAAGTCCAAATTGAACCATGTA 60.083 41.667 0.00 0.00 0.00 2.29
3804 4808 9.247126 CAAACAATGTTGAAAATCAGTACATCA 57.753 29.630 0.00 0.00 29.35 3.07
3836 4840 3.244976 CATCCGGTTGAGTTTGATTTGC 58.755 45.455 6.68 0.00 0.00 3.68
3912 4916 6.890268 ACAAGAAGTTAAGGGAAAAAGAGTGT 59.110 34.615 0.00 0.00 0.00 3.55
3939 4943 4.413851 TGTAATATTACTGGCATGGGGTCA 59.586 41.667 22.82 0.00 34.77 4.02
3943 4947 2.917713 TACTGGCATGGGGTCAATTT 57.082 45.000 0.00 0.00 0.00 1.82
3948 4952 1.839354 GGCATGGGGTCAATTTGGATT 59.161 47.619 0.00 0.00 0.00 3.01
3958 4962 6.088173 GGGTCAATTTGGATTTAACACGTAC 58.912 40.000 0.00 0.00 0.00 3.67
3977 4983 6.310467 CACGTACACAGTGTAATTGAGCTATT 59.690 38.462 15.24 0.00 34.21 1.73
4170 5176 5.181245 CCTCGGTGTGATGTTTATTGAAACT 59.819 40.000 2.56 0.00 44.52 2.66
4257 5268 2.887151 AGCTGGCTTTGGTCATAGTT 57.113 45.000 0.00 0.00 0.00 2.24
4260 5271 3.507622 AGCTGGCTTTGGTCATAGTTTTC 59.492 43.478 0.00 0.00 0.00 2.29
4301 5312 3.251004 GCAGCGGAATAGGGTTATTCTTG 59.749 47.826 7.10 5.51 43.07 3.02
4380 5393 1.600636 CCAGGCTCTGTTCCGCAAA 60.601 57.895 0.00 0.00 0.00 3.68
4595 5608 3.108376 CCTACCTTACTGCTTCCCTCTT 58.892 50.000 0.00 0.00 0.00 2.85
4613 5626 2.834549 TCTTGGTCTCAGGAGGATTGAC 59.165 50.000 0.00 0.00 0.00 3.18
4679 5692 7.414098 CGAGAACCATTTTCGTTGGAAAGATAT 60.414 37.037 0.00 0.00 42.72 1.63
4804 5818 9.131791 AGTTAGTGATTGGTTTATGTTTCAACT 57.868 29.630 0.00 0.00 0.00 3.16
4962 6006 5.329399 AGTGCTTGGTTTATGGTTCCAATA 58.671 37.500 0.00 0.00 39.91 1.90
4969 6013 7.639113 TGGTTTATGGTTCCAATAACAGATC 57.361 36.000 15.81 0.00 0.00 2.75
4987 6031 2.396157 CGCCAGGCCTACCGAAAAC 61.396 63.158 16.81 0.00 42.76 2.43
4991 6035 0.794473 CAGGCCTACCGAAAACGAAC 59.206 55.000 3.98 0.00 42.76 3.95
5001 6045 3.002965 ACCGAAAACGAACTCAATTCACC 59.997 43.478 0.00 0.00 37.12 4.02
5003 6052 3.250040 CGAAAACGAACTCAATTCACCCT 59.750 43.478 0.00 0.00 37.12 4.34
5006 6055 5.592104 AAACGAACTCAATTCACCCTTTT 57.408 34.783 0.00 0.00 37.12 2.27
5007 6056 4.568152 ACGAACTCAATTCACCCTTTTG 57.432 40.909 0.00 0.00 37.12 2.44
5051 6101 3.758554 GGATCAACAATTGCTACACCTGT 59.241 43.478 5.05 0.00 0.00 4.00
5058 6108 5.509498 ACAATTGCTACACCTGTGGATAAT 58.491 37.500 5.05 0.00 34.19 1.28
5062 6112 6.509418 TTGCTACACCTGTGGATAATTTTC 57.491 37.500 1.91 0.00 34.19 2.29
5068 6118 4.716287 CACCTGTGGATAATTTTCCCCAAT 59.284 41.667 11.86 0.00 34.67 3.16
5076 6126 8.704668 GTGGATAATTTTCCCCAATTGATAAGT 58.295 33.333 7.12 0.00 34.67 2.24
5077 6127 8.703743 TGGATAATTTTCCCCAATTGATAAGTG 58.296 33.333 7.12 0.00 34.67 3.16
5078 6128 8.704668 GGATAATTTTCCCCAATTGATAAGTGT 58.295 33.333 7.12 0.00 0.00 3.55
5081 6131 5.975693 TTTCCCCAATTGATAAGTGTCAC 57.024 39.130 7.12 0.00 0.00 3.67
5082 6132 4.649267 TCCCCAATTGATAAGTGTCACA 57.351 40.909 7.12 0.00 0.00 3.58
5083 6133 4.331968 TCCCCAATTGATAAGTGTCACAC 58.668 43.478 7.12 0.00 34.10 3.82
5084 6134 3.126858 CCCCAATTGATAAGTGTCACACG 59.873 47.826 7.12 0.00 39.64 4.49
5085 6135 3.751175 CCCAATTGATAAGTGTCACACGT 59.249 43.478 7.12 1.06 39.64 4.49
5086 6136 4.378356 CCCAATTGATAAGTGTCACACGTG 60.378 45.833 15.48 15.48 39.64 4.49
5100 6150 2.156891 CACACGTGTGGCATGTAGTAAC 59.843 50.000 35.65 0.00 42.10 2.50
5104 6154 1.730064 GTGTGGCATGTAGTAACACCG 59.270 52.381 0.00 0.00 38.78 4.94
5106 6156 0.611200 TGGCATGTAGTAACACCGCT 59.389 50.000 0.00 0.00 38.78 5.52
5111 6161 3.179830 CATGTAGTAACACCGCTCTGAC 58.820 50.000 0.00 0.00 38.78 3.51
5112 6162 1.542915 TGTAGTAACACCGCTCTGACC 59.457 52.381 0.00 0.00 0.00 4.02
5113 6163 1.135170 GTAGTAACACCGCTCTGACCC 60.135 57.143 0.00 0.00 0.00 4.46
5114 6164 1.079336 GTAACACCGCTCTGACCCC 60.079 63.158 0.00 0.00 0.00 4.95
5115 6165 2.288025 TAACACCGCTCTGACCCCC 61.288 63.158 0.00 0.00 0.00 5.40
5117 6167 2.363795 CACCGCTCTGACCCCCTA 60.364 66.667 0.00 0.00 0.00 3.53
5177 6275 6.329496 TGCCATGCTTTATAACTAAAGTTGC 58.671 36.000 5.62 1.01 43.81 4.17
5181 6279 8.629158 CCATGCTTTATAACTAAAGTTGCCATA 58.371 33.333 5.62 0.00 43.81 2.74
5237 6335 1.279271 GTGTGGCACTTATCAGGGTCT 59.721 52.381 19.83 0.00 0.00 3.85
5272 6370 4.760204 GGAACTAACTTACATGCTGGTGTT 59.240 41.667 0.00 0.00 33.62 3.32
5403 6501 6.094325 ACACAAAACTCAAAATGTCCGTTCTA 59.906 34.615 0.00 0.00 0.00 2.10
5449 6547 2.630158 AGCAACATGAGAGCTGTGATC 58.370 47.619 0.00 0.00 37.20 2.92
5477 6575 1.858458 CGTTGCATCTATGGTGGTACG 59.142 52.381 0.00 0.00 0.00 3.67
5478 6576 2.480587 CGTTGCATCTATGGTGGTACGA 60.481 50.000 0.00 0.00 0.00 3.43
5490 6588 2.288886 GGTGGTACGAGCAGAAAGACTT 60.289 50.000 1.87 0.00 0.00 3.01
5491 6589 3.057033 GGTGGTACGAGCAGAAAGACTTA 60.057 47.826 1.87 0.00 0.00 2.24
5492 6590 4.553323 GTGGTACGAGCAGAAAGACTTAA 58.447 43.478 0.00 0.00 0.00 1.85
5493 6591 4.621886 GTGGTACGAGCAGAAAGACTTAAG 59.378 45.833 0.00 0.00 0.00 1.85
5555 6655 0.102300 TCATCCGCATACAGTGACCG 59.898 55.000 0.00 0.00 0.00 4.79
5569 6669 0.331278 TGACCGGGCAATCCTCAAAT 59.669 50.000 8.12 0.00 0.00 2.32
5586 6686 5.655532 CCTCAAATTTCCTCATTCACATCCT 59.344 40.000 0.00 0.00 0.00 3.24
5601 6701 9.498176 CATTCACATCCTTGTATCTCATATTCA 57.502 33.333 0.00 0.00 33.76 2.57
5606 6706 8.300286 ACATCCTTGTATCTCATATTCAGTACG 58.700 37.037 0.00 0.00 33.16 3.67
5607 6707 7.215719 TCCTTGTATCTCATATTCAGTACGG 57.784 40.000 0.00 0.00 0.00 4.02
5662 6762 4.753516 ACCATGTAGATCATCAAACCGA 57.246 40.909 0.00 0.00 34.09 4.69
5672 6772 6.406370 AGATCATCAAACCGACATAGAAACA 58.594 36.000 0.00 0.00 0.00 2.83
5675 6775 6.227522 TCATCAAACCGACATAGAAACAGAA 58.772 36.000 0.00 0.00 0.00 3.02
5676 6776 6.368791 TCATCAAACCGACATAGAAACAGAAG 59.631 38.462 0.00 0.00 0.00 2.85
5677 6777 5.849510 TCAAACCGACATAGAAACAGAAGA 58.150 37.500 0.00 0.00 0.00 2.87
5678 6778 5.926542 TCAAACCGACATAGAAACAGAAGAG 59.073 40.000 0.00 0.00 0.00 2.85
5679 6779 3.851098 ACCGACATAGAAACAGAAGAGC 58.149 45.455 0.00 0.00 0.00 4.09
5680 6780 3.190874 CCGACATAGAAACAGAAGAGCC 58.809 50.000 0.00 0.00 0.00 4.70
5681 6781 3.118956 CCGACATAGAAACAGAAGAGCCT 60.119 47.826 0.00 0.00 0.00 4.58
5682 6782 4.499183 CGACATAGAAACAGAAGAGCCTT 58.501 43.478 0.00 0.00 0.00 4.35
5683 6783 4.564769 CGACATAGAAACAGAAGAGCCTTC 59.435 45.833 6.79 6.79 0.00 3.46
5684 6784 4.499183 ACATAGAAACAGAAGAGCCTTCG 58.501 43.478 8.66 7.06 0.00 3.79
5685 6785 1.802069 AGAAACAGAAGAGCCTTCGC 58.198 50.000 8.66 0.00 0.00 4.70
5686 6786 0.799393 GAAACAGAAGAGCCTTCGCC 59.201 55.000 8.66 0.00 34.57 5.54
5687 6787 0.606673 AAACAGAAGAGCCTTCGCCC 60.607 55.000 8.66 0.00 34.57 6.13
5688 6788 1.484444 AACAGAAGAGCCTTCGCCCT 61.484 55.000 8.66 0.00 34.57 5.19
5689 6789 1.153469 CAGAAGAGCCTTCGCCCTC 60.153 63.158 8.66 0.00 34.57 4.30
5690 6790 1.610673 AGAAGAGCCTTCGCCCTCA 60.611 57.895 8.66 0.00 34.57 3.86
5691 6791 1.153469 GAAGAGCCTTCGCCCTCAG 60.153 63.158 0.09 0.00 34.57 3.35
5692 6792 3.322318 AAGAGCCTTCGCCCTCAGC 62.322 63.158 0.00 0.00 34.57 4.26
5693 6793 4.087892 GAGCCTTCGCCCTCAGCA 62.088 66.667 0.00 0.00 44.04 4.41
5694 6794 4.400961 AGCCTTCGCCCTCAGCAC 62.401 66.667 0.00 0.00 44.04 4.40
5696 6796 3.710722 CCTTCGCCCTCAGCACCT 61.711 66.667 0.00 0.00 44.04 4.00
5697 6797 2.348998 CTTCGCCCTCAGCACCTT 59.651 61.111 0.00 0.00 44.04 3.50
5698 6798 1.743252 CTTCGCCCTCAGCACCTTC 60.743 63.158 0.00 0.00 44.04 3.46
5699 6799 3.254024 TTCGCCCTCAGCACCTTCC 62.254 63.158 0.00 0.00 44.04 3.46
5700 6800 3.710722 CGCCCTCAGCACCTTCCT 61.711 66.667 0.00 0.00 44.04 3.36
5701 6801 2.270527 GCCCTCAGCACCTTCCTC 59.729 66.667 0.00 0.00 42.97 3.71
5702 6802 2.993853 CCCTCAGCACCTTCCTCC 59.006 66.667 0.00 0.00 0.00 4.30
5703 6803 1.614824 CCCTCAGCACCTTCCTCCT 60.615 63.158 0.00 0.00 0.00 3.69
5704 6804 1.621672 CCCTCAGCACCTTCCTCCTC 61.622 65.000 0.00 0.00 0.00 3.71
5705 6805 1.621672 CCTCAGCACCTTCCTCCTCC 61.622 65.000 0.00 0.00 0.00 4.30
5706 6806 0.617249 CTCAGCACCTTCCTCCTCCT 60.617 60.000 0.00 0.00 0.00 3.69
5707 6807 0.616111 TCAGCACCTTCCTCCTCCTC 60.616 60.000 0.00 0.00 0.00 3.71
5708 6808 1.306568 AGCACCTTCCTCCTCCTCC 60.307 63.158 0.00 0.00 0.00 4.30
5709 6809 1.306568 GCACCTTCCTCCTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
5710 6810 1.334384 GCACCTTCCTCCTCCTCCTC 61.334 65.000 0.00 0.00 0.00 3.71
5711 6811 0.689412 CACCTTCCTCCTCCTCCTCC 60.689 65.000 0.00 0.00 0.00 4.30
5712 6812 0.858139 ACCTTCCTCCTCCTCCTCCT 60.858 60.000 0.00 0.00 0.00 3.69
5713 6813 0.105709 CCTTCCTCCTCCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
5714 6814 0.933700 CTTCCTCCTCCTCCTCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
5715 6815 0.930726 TTCCTCCTCCTCCTCCTCTC 59.069 60.000 0.00 0.00 0.00 3.20
5716 6816 0.996762 TCCTCCTCCTCCTCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
5717 6817 1.292941 CCTCCTCCTCCTCCTCTCCA 61.293 65.000 0.00 0.00 0.00 3.86
5718 6818 0.185901 CTCCTCCTCCTCCTCTCCAG 59.814 65.000 0.00 0.00 0.00 3.86
5719 6819 1.232792 CCTCCTCCTCCTCTCCAGG 59.767 68.421 0.00 0.00 42.01 4.45
5720 6820 1.457455 CTCCTCCTCCTCTCCAGGC 60.457 68.421 0.00 0.00 40.12 4.85
5721 6821 2.445654 CCTCCTCCTCTCCAGGCC 60.446 72.222 0.00 0.00 40.12 5.19
5722 6822 2.445654 CTCCTCCTCTCCAGGCCC 60.446 72.222 0.00 0.00 40.12 5.80
5723 6823 2.955246 TCCTCCTCTCCAGGCCCT 60.955 66.667 0.00 0.00 40.12 5.19
5724 6824 2.767496 CCTCCTCTCCAGGCCCTG 60.767 72.222 2.91 2.91 40.12 4.45
5725 6825 2.040278 CTCCTCTCCAGGCCCTGT 59.960 66.667 10.47 0.00 40.12 4.00
5726 6826 1.614824 CTCCTCTCCAGGCCCTGTT 60.615 63.158 10.47 0.00 40.12 3.16
5727 6827 1.613630 TCCTCTCCAGGCCCTGTTC 60.614 63.158 10.47 0.00 40.12 3.18
5728 6828 2.674220 CCTCTCCAGGCCCTGTTCC 61.674 68.421 10.47 0.00 30.98 3.62
5729 6829 2.610859 TCTCCAGGCCCTGTTCCC 60.611 66.667 10.47 0.00 0.00 3.97
5730 6830 3.732849 CTCCAGGCCCTGTTCCCC 61.733 72.222 10.47 0.00 0.00 4.81
5753 6853 3.791586 GCCCTGAGCTCCCTGTCC 61.792 72.222 12.15 0.00 38.99 4.02
5754 6854 2.040278 CCCTGAGCTCCCTGTCCT 59.960 66.667 12.15 0.00 0.00 3.85
5755 6855 2.063378 CCCTGAGCTCCCTGTCCTC 61.063 68.421 12.15 0.00 0.00 3.71
5756 6856 1.001503 CCTGAGCTCCCTGTCCTCT 59.998 63.158 12.15 0.00 0.00 3.69
5757 6857 1.329171 CCTGAGCTCCCTGTCCTCTG 61.329 65.000 12.15 0.00 0.00 3.35
5758 6858 1.958902 CTGAGCTCCCTGTCCTCTGC 61.959 65.000 12.15 0.00 0.00 4.26
5759 6859 3.073735 AGCTCCCTGTCCTCTGCG 61.074 66.667 0.00 0.00 0.00 5.18
5760 6860 3.071206 GCTCCCTGTCCTCTGCGA 61.071 66.667 0.00 0.00 0.00 5.10
5761 6861 2.430610 GCTCCCTGTCCTCTGCGAT 61.431 63.158 0.00 0.00 0.00 4.58
5762 6862 1.739049 CTCCCTGTCCTCTGCGATC 59.261 63.158 0.00 0.00 0.00 3.69
5763 6863 1.743321 CTCCCTGTCCTCTGCGATCC 61.743 65.000 0.00 0.00 0.00 3.36
5764 6864 2.415010 CCTGTCCTCTGCGATCCG 59.585 66.667 0.00 0.00 0.00 4.18
5765 6865 2.121538 CCTGTCCTCTGCGATCCGA 61.122 63.158 0.00 0.00 0.00 4.55
5766 6866 1.459455 CCTGTCCTCTGCGATCCGAT 61.459 60.000 0.00 0.00 0.00 4.18
5767 6867 0.387202 CTGTCCTCTGCGATCCGATT 59.613 55.000 0.00 0.00 0.00 3.34
5768 6868 0.385751 TGTCCTCTGCGATCCGATTC 59.614 55.000 0.00 0.00 0.00 2.52
5769 6869 0.661780 GTCCTCTGCGATCCGATTCG 60.662 60.000 0.00 0.00 41.99 3.34
5777 6877 2.285319 CGATCCGATTCGCAATGAAC 57.715 50.000 0.00 0.00 40.00 3.18
5778 6878 1.395944 CGATCCGATTCGCAATGAACG 60.396 52.381 0.00 0.00 40.00 3.95
5779 6879 0.304705 ATCCGATTCGCAATGAACGC 59.695 50.000 0.00 0.00 40.00 4.84
5780 6880 0.739462 TCCGATTCGCAATGAACGCT 60.739 50.000 0.00 0.00 40.00 5.07
5781 6881 0.096976 CCGATTCGCAATGAACGCTT 59.903 50.000 0.00 0.00 40.00 4.68
5782 6882 1.174352 CGATTCGCAATGAACGCTTG 58.826 50.000 0.00 0.00 40.00 4.01
5783 6883 0.909843 GATTCGCAATGAACGCTTGC 59.090 50.000 0.00 0.00 44.32 4.01
5784 6884 0.523072 ATTCGCAATGAACGCTTGCT 59.477 45.000 6.13 0.00 45.32 3.91
5785 6885 0.110238 TTCGCAATGAACGCTTGCTC 60.110 50.000 6.13 0.00 45.32 4.26
5786 6886 0.950555 TCGCAATGAACGCTTGCTCT 60.951 50.000 6.13 0.00 45.32 4.09
5787 6887 0.791983 CGCAATGAACGCTTGCTCTG 60.792 55.000 6.13 0.00 45.32 3.35
5788 6888 1.069378 GCAATGAACGCTTGCTCTGC 61.069 55.000 0.68 0.00 44.36 4.26
5789 6889 0.455633 CAATGAACGCTTGCTCTGCC 60.456 55.000 0.00 0.00 0.00 4.85
5790 6890 1.589716 AATGAACGCTTGCTCTGCCC 61.590 55.000 0.00 0.00 0.00 5.36
5791 6891 2.359230 GAACGCTTGCTCTGCCCT 60.359 61.111 0.00 0.00 0.00 5.19
5792 6892 2.670934 AACGCTTGCTCTGCCCTG 60.671 61.111 0.00 0.00 0.00 4.45
5793 6893 3.182590 AACGCTTGCTCTGCCCTGA 62.183 57.895 0.00 0.00 0.00 3.86
5794 6894 2.124819 CGCTTGCTCTGCCCTGAT 60.125 61.111 0.00 0.00 0.00 2.90
5795 6895 1.144716 CGCTTGCTCTGCCCTGATA 59.855 57.895 0.00 0.00 0.00 2.15
5796 6896 0.879400 CGCTTGCTCTGCCCTGATAG 60.879 60.000 0.00 0.00 0.00 2.08
5797 6897 0.179936 GCTTGCTCTGCCCTGATAGT 59.820 55.000 0.00 0.00 0.00 2.12
5798 6898 1.950828 CTTGCTCTGCCCTGATAGTG 58.049 55.000 0.00 0.00 0.00 2.74
5799 6899 1.209019 CTTGCTCTGCCCTGATAGTGT 59.791 52.381 0.00 0.00 0.00 3.55
5800 6900 0.538584 TGCTCTGCCCTGATAGTGTG 59.461 55.000 0.00 0.00 0.00 3.82
5801 6901 0.813210 GCTCTGCCCTGATAGTGTGC 60.813 60.000 0.00 0.00 0.00 4.57
5802 6902 0.829333 CTCTGCCCTGATAGTGTGCT 59.171 55.000 0.00 0.00 0.00 4.40
5803 6903 1.209019 CTCTGCCCTGATAGTGTGCTT 59.791 52.381 0.00 0.00 0.00 3.91
5804 6904 1.065926 TCTGCCCTGATAGTGTGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
5805 6905 0.983467 TGCCCTGATAGTGTGCTTGA 59.017 50.000 0.00 0.00 0.00 3.02
5806 6906 1.339055 TGCCCTGATAGTGTGCTTGAC 60.339 52.381 0.00 0.00 0.00 3.18
5807 6907 1.645034 CCCTGATAGTGTGCTTGACG 58.355 55.000 0.00 0.00 0.00 4.35
5808 6908 1.204704 CCCTGATAGTGTGCTTGACGA 59.795 52.381 0.00 0.00 0.00 4.20
5809 6909 2.534298 CCTGATAGTGTGCTTGACGAG 58.466 52.381 0.00 0.00 0.00 4.18
5810 6910 2.534298 CTGATAGTGTGCTTGACGAGG 58.466 52.381 0.00 0.00 0.00 4.63
5811 6911 1.893137 TGATAGTGTGCTTGACGAGGT 59.107 47.619 0.00 0.00 0.00 3.85
5812 6912 2.094700 TGATAGTGTGCTTGACGAGGTC 60.095 50.000 0.00 0.00 0.00 3.85
5813 6913 0.240145 TAGTGTGCTTGACGAGGTCG 59.760 55.000 0.00 0.00 46.33 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 37 1.227943 AGCAGCTCAAAAGGCGACA 60.228 52.632 0.00 0.00 34.52 4.35
244 289 3.291383 TTGCAACTTTCCGGCCGG 61.291 61.111 39.13 39.13 0.00 6.13
245 290 2.050442 GTTGCAACTTTCCGGCCG 60.050 61.111 21.04 21.04 0.00 6.13
246 291 2.022240 TTGGTTGCAACTTTCCGGCC 62.022 55.000 27.64 10.32 0.00 6.13
247 292 0.033366 ATTGGTTGCAACTTTCCGGC 59.967 50.000 27.64 10.78 0.00 6.13
248 293 1.339610 TCATTGGTTGCAACTTTCCGG 59.660 47.619 27.64 13.34 0.00 5.14
249 294 2.393764 GTCATTGGTTGCAACTTTCCG 58.606 47.619 27.64 13.47 0.00 4.30
250 295 2.102252 TGGTCATTGGTTGCAACTTTCC 59.898 45.455 27.64 19.73 0.00 3.13
251 296 3.451141 TGGTCATTGGTTGCAACTTTC 57.549 42.857 27.64 12.92 0.00 2.62
299 378 1.527380 TTTTTCGCCGGGTGAAGCT 60.527 52.632 21.13 0.00 33.52 3.74
509 603 1.250154 CCCGCTGCCATGAAAAAGGA 61.250 55.000 0.00 0.00 0.00 3.36
541 635 1.757699 GTTAGGGGACTGCCTGACTAG 59.242 57.143 0.00 0.00 43.88 2.57
764 1096 1.376424 CGCTGGCTCCAGTGTCAAT 60.376 57.895 18.67 0.00 46.14 2.57
800 1132 4.612412 ACGCCGGCCGAACTTTCA 62.612 61.111 30.73 0.00 41.02 2.69
985 1318 3.599285 TTGCGCGTCCCCGAGATTT 62.599 57.895 8.43 0.00 35.78 2.17
1515 1849 0.033601 ATCGCACCAAGCCCCAAATA 60.034 50.000 0.00 0.00 41.38 1.40
1529 1863 4.415881 AATACTGTAACCATGGATCGCA 57.584 40.909 21.47 8.81 0.00 5.10
1619 1953 1.333636 ACTTCCTCAGCCAGGGATCG 61.334 60.000 0.00 0.00 43.67 3.69
1736 2085 2.645730 TTGTCACCAAACAACACTGC 57.354 45.000 0.00 0.00 34.31 4.40
1740 2089 3.257393 GCACATTTGTCACCAAACAACA 58.743 40.909 0.00 0.00 43.03 3.33
1765 2114 4.521062 AAGCTAGGCCGAGCAGCG 62.521 66.667 35.20 2.48 45.43 5.18
1823 2172 7.641411 TGAAACAACTCGTACGTATTAGCTATC 59.359 37.037 16.05 5.83 0.00 2.08
1824 2173 7.475015 TGAAACAACTCGTACGTATTAGCTAT 58.525 34.615 16.05 0.00 0.00 2.97
1825 2174 6.841119 TGAAACAACTCGTACGTATTAGCTA 58.159 36.000 16.05 0.00 0.00 3.32
1826 2175 5.702865 TGAAACAACTCGTACGTATTAGCT 58.297 37.500 16.05 0.00 0.00 3.32
1827 2176 5.997732 TGAAACAACTCGTACGTATTAGC 57.002 39.130 16.05 0.50 0.00 3.09
1828 2177 6.892951 GCATTGAAACAACTCGTACGTATTAG 59.107 38.462 16.05 7.67 0.00 1.73
1829 2178 6.183360 GGCATTGAAACAACTCGTACGTATTA 60.183 38.462 16.05 0.00 0.00 0.98
1830 2179 5.390145 GGCATTGAAACAACTCGTACGTATT 60.390 40.000 16.05 8.01 0.00 1.89
1831 2180 4.092383 GGCATTGAAACAACTCGTACGTAT 59.908 41.667 16.05 1.33 0.00 3.06
1832 2181 3.429543 GGCATTGAAACAACTCGTACGTA 59.570 43.478 16.05 0.00 0.00 3.57
1833 2182 2.222445 GGCATTGAAACAACTCGTACGT 59.778 45.455 16.05 0.00 0.00 3.57
1834 2183 2.222213 TGGCATTGAAACAACTCGTACG 59.778 45.455 9.53 9.53 0.00 3.67
1835 2184 3.810373 CTGGCATTGAAACAACTCGTAC 58.190 45.455 0.00 0.00 0.00 3.67
1836 2185 2.225491 GCTGGCATTGAAACAACTCGTA 59.775 45.455 0.00 0.00 0.00 3.43
1837 2186 1.001378 GCTGGCATTGAAACAACTCGT 60.001 47.619 0.00 0.00 0.00 4.18
1838 2187 1.666888 GGCTGGCATTGAAACAACTCG 60.667 52.381 0.00 0.00 0.00 4.18
1839 2188 1.615392 AGGCTGGCATTGAAACAACTC 59.385 47.619 3.38 0.00 0.00 3.01
1840 2189 1.708341 AGGCTGGCATTGAAACAACT 58.292 45.000 3.38 0.00 0.00 3.16
1841 2190 2.672195 GCTAGGCTGGCATTGAAACAAC 60.672 50.000 18.73 0.00 0.00 3.32
1842 2191 1.545582 GCTAGGCTGGCATTGAAACAA 59.454 47.619 18.73 0.00 0.00 2.83
1843 2192 1.176527 GCTAGGCTGGCATTGAAACA 58.823 50.000 18.73 0.00 0.00 2.83
1844 2193 1.467920 AGCTAGGCTGGCATTGAAAC 58.532 50.000 25.21 0.00 37.57 2.78
1845 2194 2.220653 AAGCTAGGCTGGCATTGAAA 57.779 45.000 25.21 0.00 39.62 2.69
1846 2195 1.820519 CAAAGCTAGGCTGGCATTGAA 59.179 47.619 29.31 0.00 39.68 2.69
1847 2196 1.004628 TCAAAGCTAGGCTGGCATTGA 59.995 47.619 30.88 30.88 42.42 2.57
1848 2197 1.133790 GTCAAAGCTAGGCTGGCATTG 59.866 52.381 27.90 27.90 39.62 2.82
1849 2198 1.005215 AGTCAAAGCTAGGCTGGCATT 59.995 47.619 25.21 16.65 39.62 3.56
1850 2199 0.622665 AGTCAAAGCTAGGCTGGCAT 59.377 50.000 25.21 10.62 39.62 4.40
1851 2200 0.401738 AAGTCAAAGCTAGGCTGGCA 59.598 50.000 25.21 0.44 39.62 4.92
1852 2201 0.807496 CAAGTCAAAGCTAGGCTGGC 59.193 55.000 15.83 15.83 39.62 4.85
1853 2202 0.807496 GCAAGTCAAAGCTAGGCTGG 59.193 55.000 0.00 0.00 39.62 4.85
1854 2203 1.467734 CAGCAAGTCAAAGCTAGGCTG 59.532 52.381 0.00 0.00 39.62 4.85
1855 2204 1.612726 CCAGCAAGTCAAAGCTAGGCT 60.613 52.381 0.00 0.00 42.56 4.58
1856 2205 0.807496 CCAGCAAGTCAAAGCTAGGC 59.193 55.000 0.00 0.00 39.50 3.93
1857 2206 2.027745 TCTCCAGCAAGTCAAAGCTAGG 60.028 50.000 0.00 0.00 39.50 3.02
1858 2207 3.325293 TCTCCAGCAAGTCAAAGCTAG 57.675 47.619 0.00 0.00 39.50 3.42
1859 2208 3.769739 TTCTCCAGCAAGTCAAAGCTA 57.230 42.857 0.00 0.00 39.50 3.32
1860 2209 2.645838 TTCTCCAGCAAGTCAAAGCT 57.354 45.000 0.00 0.00 42.94 3.74
1861 2210 3.505293 AGAATTCTCCAGCAAGTCAAAGC 59.495 43.478 0.88 0.00 0.00 3.51
1862 2211 4.082895 CCAGAATTCTCCAGCAAGTCAAAG 60.083 45.833 4.57 0.00 0.00 2.77
1863 2212 3.822735 CCAGAATTCTCCAGCAAGTCAAA 59.177 43.478 4.57 0.00 0.00 2.69
1864 2213 3.415212 CCAGAATTCTCCAGCAAGTCAA 58.585 45.455 4.57 0.00 0.00 3.18
1865 2214 2.877300 GCCAGAATTCTCCAGCAAGTCA 60.877 50.000 4.57 0.00 0.00 3.41
1866 2215 1.742268 GCCAGAATTCTCCAGCAAGTC 59.258 52.381 4.57 0.00 0.00 3.01
1867 2216 1.831580 GCCAGAATTCTCCAGCAAGT 58.168 50.000 4.57 0.00 0.00 3.16
1868 2217 0.731417 CGCCAGAATTCTCCAGCAAG 59.269 55.000 17.37 2.13 0.00 4.01
1869 2218 0.677731 CCGCCAGAATTCTCCAGCAA 60.678 55.000 17.37 0.00 0.00 3.91
1870 2219 1.078214 CCGCCAGAATTCTCCAGCA 60.078 57.895 17.37 0.00 0.00 4.41
1871 2220 0.179034 ATCCGCCAGAATTCTCCAGC 60.179 55.000 4.57 8.19 0.00 4.85
1872 2221 1.134280 ACATCCGCCAGAATTCTCCAG 60.134 52.381 4.57 0.00 0.00 3.86
1873 2222 0.911769 ACATCCGCCAGAATTCTCCA 59.088 50.000 4.57 0.00 0.00 3.86
1874 2223 2.910688 TACATCCGCCAGAATTCTCC 57.089 50.000 4.57 0.00 0.00 3.71
1875 2224 4.130118 ACATTACATCCGCCAGAATTCTC 58.870 43.478 4.57 0.00 0.00 2.87
1876 2225 4.156455 ACATTACATCCGCCAGAATTCT 57.844 40.909 0.88 0.88 0.00 2.40
1877 2226 4.452455 CCTACATTACATCCGCCAGAATTC 59.548 45.833 0.00 0.00 0.00 2.17
1878 2227 4.389374 CCTACATTACATCCGCCAGAATT 58.611 43.478 0.00 0.00 0.00 2.17
1879 2228 3.244561 CCCTACATTACATCCGCCAGAAT 60.245 47.826 0.00 0.00 0.00 2.40
1880 2229 2.104111 CCCTACATTACATCCGCCAGAA 59.896 50.000 0.00 0.00 0.00 3.02
1881 2230 1.691976 CCCTACATTACATCCGCCAGA 59.308 52.381 0.00 0.00 0.00 3.86
1882 2231 1.691976 TCCCTACATTACATCCGCCAG 59.308 52.381 0.00 0.00 0.00 4.85
1883 2232 1.796017 TCCCTACATTACATCCGCCA 58.204 50.000 0.00 0.00 0.00 5.69
1884 2233 2.922740 TTCCCTACATTACATCCGCC 57.077 50.000 0.00 0.00 0.00 6.13
1885 2234 4.002906 TCATTCCCTACATTACATCCGC 57.997 45.455 0.00 0.00 0.00 5.54
1886 2235 5.812642 GCTATCATTCCCTACATTACATCCG 59.187 44.000 0.00 0.00 0.00 4.18
1887 2236 6.951971 AGCTATCATTCCCTACATTACATCC 58.048 40.000 0.00 0.00 0.00 3.51
1891 2240 9.517609 CGTATTAGCTATCATTCCCTACATTAC 57.482 37.037 0.00 0.00 0.00 1.89
1892 2241 9.251440 ACGTATTAGCTATCATTCCCTACATTA 57.749 33.333 0.00 0.00 0.00 1.90
1893 2242 8.135382 ACGTATTAGCTATCATTCCCTACATT 57.865 34.615 0.00 0.00 0.00 2.71
1894 2243 7.719871 ACGTATTAGCTATCATTCCCTACAT 57.280 36.000 0.00 0.00 0.00 2.29
1895 2244 7.148356 CGTACGTATTAGCTATCATTCCCTACA 60.148 40.741 7.22 0.00 0.00 2.74
1896 2245 7.065085 TCGTACGTATTAGCTATCATTCCCTAC 59.935 40.741 16.05 0.00 0.00 3.18
2313 2663 7.054751 AGCCTGTTTAGGGAAGAACATAATAC 58.945 38.462 0.00 0.00 44.75 1.89
2315 2665 6.079712 AGCCTGTTTAGGGAAGAACATAAT 57.920 37.500 0.00 0.00 44.75 1.28
2661 3057 3.519107 AGGGGAATGCCAGTAAAATTTGG 59.481 43.478 0.00 0.00 37.53 3.28
2911 3310 6.875972 ATTTTGGTACATCTGGAGAGTACT 57.124 37.500 0.00 0.00 39.30 2.73
3055 3454 5.532557 TCAGACTGAGTACAATCTGTTGTG 58.467 41.667 0.00 7.08 46.33 3.33
3212 3617 2.092211 CGTGGTCTGCGAAGAATTGTAC 59.908 50.000 0.00 0.00 0.00 2.90
3233 3638 4.260784 GGTGAAGGATCGCACAAATATCAC 60.261 45.833 12.19 0.00 37.83 3.06
3245 3650 0.811915 AGTGAGACGGTGAAGGATCG 59.188 55.000 0.00 0.00 0.00 3.69
3274 3679 6.213195 ACATCAAGGGAAATTCCTTAAATGCA 59.787 34.615 12.28 0.00 44.70 3.96
3327 4045 3.340034 TCAACGCCCACAAGGTTATAAG 58.660 45.455 0.00 0.00 38.26 1.73
3368 4086 4.503741 ACATGGTTCAATTTGGACTTCG 57.496 40.909 7.73 0.00 0.00 3.79
3766 4484 2.665537 ACATTGTTTGTTTGTGCGTGTG 59.334 40.909 0.00 0.00 33.74 3.82
3767 4485 2.953020 ACATTGTTTGTTTGTGCGTGT 58.047 38.095 0.00 0.00 33.74 4.49
3768 4486 3.366121 TCAACATTGTTTGTTTGTGCGTG 59.634 39.130 0.00 0.00 46.51 5.34
3775 4779 9.429359 TGTACTGATTTTCAACATTGTTTGTTT 57.571 25.926 0.00 0.00 46.51 2.83
3804 4808 3.750371 TCAACCGGATGTCAAGTCAAAT 58.250 40.909 9.46 0.00 0.00 2.32
3836 4840 1.156736 CGTTGCCTTACTTGACCCAG 58.843 55.000 0.00 0.00 0.00 4.45
3884 4888 8.491958 ACTCTTTTTCCCTTAACTTCTTGTCTA 58.508 33.333 0.00 0.00 0.00 2.59
3912 4916 6.102027 ACCCCATGCCAGTAATATTACAGTTA 59.898 38.462 24.05 10.57 36.12 2.24
3939 4943 7.136119 CACTGTGTACGTGTTAAATCCAAATT 58.864 34.615 0.00 0.00 0.00 1.82
3943 4947 4.695396 ACACTGTGTACGTGTTAAATCCA 58.305 39.130 12.53 0.00 42.56 3.41
3948 4952 6.074195 GCTCAATTACACTGTGTACGTGTTAA 60.074 38.462 19.57 6.35 42.56 2.01
4099 5105 1.382522 ATGGATACTTGCCTGTTGCG 58.617 50.000 0.00 0.00 39.92 4.85
4170 5176 7.519032 AATGTTAAAACCAGCTTTAGCACTA 57.481 32.000 4.33 0.00 45.16 2.74
4257 5268 5.652014 TGCTTTTGAGTTCCAGAAGAAGAAA 59.348 36.000 0.00 0.00 38.79 2.52
4260 5271 4.556302 GCTGCTTTTGAGTTCCAGAAGAAG 60.556 45.833 0.00 0.00 42.64 2.85
4595 5608 2.182827 CAGTCAATCCTCCTGAGACCA 58.817 52.381 0.00 0.00 0.00 4.02
4613 5626 0.032678 ACTCAACTGCCGTGAGACAG 59.967 55.000 13.55 0.00 39.86 3.51
4804 5818 5.603596 ACAAGATGGGCGACGTAAATATAA 58.396 37.500 0.00 0.00 0.00 0.98
4962 6006 1.522569 GTAGGCCTGGCGATCTGTT 59.477 57.895 17.99 0.00 0.00 3.16
4969 6013 2.046700 TTTTCGGTAGGCCTGGCG 60.047 61.111 17.99 5.22 0.00 5.69
4987 6031 3.900941 CCAAAAGGGTGAATTGAGTTCG 58.099 45.455 0.00 0.00 39.80 3.95
5001 6045 5.633182 CCGACAATTGTCAATAACCAAAAGG 59.367 40.000 32.06 18.94 44.99 3.11
5003 6052 5.533482 CCCGACAATTGTCAATAACCAAAA 58.467 37.500 32.06 0.00 44.99 2.44
5006 6055 2.490115 GCCCGACAATTGTCAATAACCA 59.510 45.455 32.06 0.00 44.99 3.67
5007 6056 2.752903 AGCCCGACAATTGTCAATAACC 59.247 45.455 32.06 16.42 44.99 2.85
5051 6101 8.703743 CACTTATCAATTGGGGAAAATTATCCA 58.296 33.333 5.42 0.00 41.55 3.41
5058 6108 5.835819 TGTGACACTTATCAATTGGGGAAAA 59.164 36.000 5.42 0.00 0.00 2.29
5062 6112 3.126858 CGTGTGACACTTATCAATTGGGG 59.873 47.826 14.42 0.00 31.34 4.96
5076 6126 1.153269 ACATGCCACACGTGTGACA 60.153 52.632 42.33 38.43 46.95 3.58
5077 6127 3.731136 ACATGCCACACGTGTGAC 58.269 55.556 42.33 34.44 46.95 3.67
5081 6131 2.156891 GTGTTACTACATGCCACACGTG 59.843 50.000 15.48 15.48 41.41 4.49
5082 6132 2.409975 GTGTTACTACATGCCACACGT 58.590 47.619 0.00 0.00 36.50 4.49
5083 6133 1.730064 GGTGTTACTACATGCCACACG 59.270 52.381 0.00 0.00 38.93 4.49
5084 6134 1.730064 CGGTGTTACTACATGCCACAC 59.270 52.381 0.00 0.00 36.50 3.82
5085 6135 1.942127 GCGGTGTTACTACATGCCACA 60.942 52.381 0.00 0.00 36.50 4.17
5086 6136 0.725117 GCGGTGTTACTACATGCCAC 59.275 55.000 0.00 0.00 36.50 5.01
5092 6142 1.542915 GGTCAGAGCGGTGTTACTACA 59.457 52.381 0.00 0.00 0.00 2.74
5100 6150 1.550130 TTTAGGGGGTCAGAGCGGTG 61.550 60.000 0.00 0.00 0.00 4.94
5125 6222 9.781834 CGTTCTGTTAGATGGCAATTTTAAATA 57.218 29.630 0.00 0.00 0.00 1.40
5126 6223 8.303876 ACGTTCTGTTAGATGGCAATTTTAAAT 58.696 29.630 0.00 0.00 0.00 1.40
5129 6226 6.811253 ACGTTCTGTTAGATGGCAATTTTA 57.189 33.333 0.00 0.00 0.00 1.52
5189 6287 3.005554 CACGAAGCAATTCTGTCCTGAT 58.994 45.455 0.00 0.00 0.00 2.90
5193 6291 3.683581 GCACGAAGCAATTCTGTCC 57.316 52.632 0.00 0.00 44.79 4.02
5263 6361 1.686052 CTAAAAAGGGCAACACCAGCA 59.314 47.619 0.00 0.00 42.05 4.41
5272 6370 6.793505 TCTAACCAAAAACTAAAAAGGGCA 57.206 33.333 0.00 0.00 0.00 5.36
5305 6403 5.010922 CAGTAATCTCTCTCCCTCCTGAATG 59.989 48.000 0.00 0.00 0.00 2.67
5373 6471 6.090088 CGGACATTTTGAGTTTTGTGTTCAAA 59.910 34.615 0.00 0.00 41.10 2.69
5449 6547 1.875514 CATAGATGCAACGTGGGGATG 59.124 52.381 0.00 0.00 0.00 3.51
5477 6575 5.418676 AGATGCTCTTAAGTCTTTCTGCTC 58.581 41.667 1.63 0.00 0.00 4.26
5478 6576 5.419239 AGATGCTCTTAAGTCTTTCTGCT 57.581 39.130 1.63 0.00 0.00 4.24
5490 6588 5.592054 CAACCTCGATTGTAGATGCTCTTA 58.408 41.667 0.00 0.00 0.00 2.10
5491 6589 4.437239 CAACCTCGATTGTAGATGCTCTT 58.563 43.478 0.00 0.00 0.00 2.85
5492 6590 3.739519 GCAACCTCGATTGTAGATGCTCT 60.740 47.826 1.06 0.00 31.83 4.09
5493 6591 2.541762 GCAACCTCGATTGTAGATGCTC 59.458 50.000 1.06 0.00 31.83 4.26
5538 6638 1.441729 CCGGTCACTGTATGCGGAT 59.558 57.895 0.00 0.00 36.38 4.18
5546 6646 2.185310 GAGGATTGCCCGGTCACTGT 62.185 60.000 0.00 0.00 40.87 3.55
5555 6655 3.099141 TGAGGAAATTTGAGGATTGCCC 58.901 45.455 0.00 0.00 35.59 5.36
5569 6669 6.962182 AGATACAAGGATGTGAATGAGGAAA 58.038 36.000 0.00 0.00 40.84 3.13
5601 6701 7.828508 TGTTTATGTCTGGATATACCGTACT 57.171 36.000 0.00 0.00 42.61 2.73
5606 6706 6.128172 GCTGCATGTTTATGTCTGGATATACC 60.128 42.308 0.00 0.00 36.65 2.73
5607 6707 6.128172 GGCTGCATGTTTATGTCTGGATATAC 60.128 42.308 0.50 0.00 36.65 1.47
5662 6762 4.499183 CGAAGGCTCTTCTGTTTCTATGT 58.501 43.478 11.56 0.00 0.00 2.29
5679 6779 3.259633 AAGGTGCTGAGGGCGAAGG 62.260 63.158 0.00 0.00 45.43 3.46
5680 6780 1.743252 GAAGGTGCTGAGGGCGAAG 60.743 63.158 0.00 0.00 45.43 3.79
5681 6781 2.347490 GAAGGTGCTGAGGGCGAA 59.653 61.111 0.00 0.00 45.43 4.70
5682 6782 3.706373 GGAAGGTGCTGAGGGCGA 61.706 66.667 0.00 0.00 45.43 5.54
5683 6783 3.672295 GAGGAAGGTGCTGAGGGCG 62.672 68.421 0.00 0.00 45.43 6.13
5684 6784 2.270527 GAGGAAGGTGCTGAGGGC 59.729 66.667 0.00 0.00 42.22 5.19
5685 6785 1.614824 AGGAGGAAGGTGCTGAGGG 60.615 63.158 0.00 0.00 0.00 4.30
5686 6786 1.621672 GGAGGAGGAAGGTGCTGAGG 61.622 65.000 0.00 0.00 0.00 3.86
5687 6787 0.617249 AGGAGGAGGAAGGTGCTGAG 60.617 60.000 0.00 0.00 0.00 3.35
5688 6788 0.616111 GAGGAGGAGGAAGGTGCTGA 60.616 60.000 0.00 0.00 0.00 4.26
5689 6789 1.621672 GGAGGAGGAGGAAGGTGCTG 61.622 65.000 0.00 0.00 0.00 4.41
5690 6790 1.306568 GGAGGAGGAGGAAGGTGCT 60.307 63.158 0.00 0.00 0.00 4.40
5691 6791 1.306568 AGGAGGAGGAGGAAGGTGC 60.307 63.158 0.00 0.00 0.00 5.01
5692 6792 0.689412 GGAGGAGGAGGAGGAAGGTG 60.689 65.000 0.00 0.00 0.00 4.00
5693 6793 0.858139 AGGAGGAGGAGGAGGAAGGT 60.858 60.000 0.00 0.00 0.00 3.50
5694 6794 0.105709 GAGGAGGAGGAGGAGGAAGG 60.106 65.000 0.00 0.00 0.00 3.46
5695 6795 0.933700 AGAGGAGGAGGAGGAGGAAG 59.066 60.000 0.00 0.00 0.00 3.46
5696 6796 0.930726 GAGAGGAGGAGGAGGAGGAA 59.069 60.000 0.00 0.00 0.00 3.36
5697 6797 0.996762 GGAGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
5698 6798 1.292941 TGGAGAGGAGGAGGAGGAGG 61.293 65.000 0.00 0.00 0.00 4.30
5699 6799 0.185901 CTGGAGAGGAGGAGGAGGAG 59.814 65.000 0.00 0.00 0.00 3.69
5700 6800 1.292941 CCTGGAGAGGAGGAGGAGGA 61.293 65.000 0.00 0.00 42.93 3.71
5701 6801 1.232792 CCTGGAGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 42.93 4.30
5702 6802 1.457455 GCCTGGAGAGGAGGAGGAG 60.457 68.421 0.00 0.00 42.93 3.69
5703 6803 2.693017 GCCTGGAGAGGAGGAGGA 59.307 66.667 0.00 0.00 42.93 3.71
5704 6804 2.445654 GGCCTGGAGAGGAGGAGG 60.446 72.222 0.00 0.00 42.93 4.30
5705 6805 2.445654 GGGCCTGGAGAGGAGGAG 60.446 72.222 0.84 0.00 42.93 3.69
5706 6806 2.955246 AGGGCCTGGAGAGGAGGA 60.955 66.667 4.50 0.00 42.93 3.71
5707 6807 2.767496 CAGGGCCTGGAGAGGAGG 60.767 72.222 26.34 0.00 42.93 4.30
5708 6808 1.614824 AACAGGGCCTGGAGAGGAG 60.615 63.158 35.34 10.13 42.93 3.69
5709 6809 1.613630 GAACAGGGCCTGGAGAGGA 60.614 63.158 35.34 0.00 42.93 3.71
5710 6810 2.674220 GGAACAGGGCCTGGAGAGG 61.674 68.421 35.34 11.70 43.19 3.69
5711 6811 2.674220 GGGAACAGGGCCTGGAGAG 61.674 68.421 35.34 12.49 35.51 3.20
5712 6812 2.610859 GGGAACAGGGCCTGGAGA 60.611 66.667 35.34 0.00 35.51 3.71
5713 6813 3.732849 GGGGAACAGGGCCTGGAG 61.733 72.222 35.34 13.29 35.51 3.86
5736 6836 3.791586 GGACAGGGAGCTCAGGGC 61.792 72.222 17.19 5.90 42.19 5.19
5737 6837 2.040278 AGGACAGGGAGCTCAGGG 59.960 66.667 17.19 6.12 0.00 4.45
5738 6838 1.001503 AGAGGACAGGGAGCTCAGG 59.998 63.158 17.19 6.51 0.00 3.86
5739 6839 1.958902 GCAGAGGACAGGGAGCTCAG 61.959 65.000 17.19 7.29 0.00 3.35
5740 6840 1.986757 GCAGAGGACAGGGAGCTCA 60.987 63.158 17.19 0.00 0.00 4.26
5741 6841 2.899505 GCAGAGGACAGGGAGCTC 59.100 66.667 4.71 4.71 0.00 4.09
5742 6842 2.870035 ATCGCAGAGGACAGGGAGCT 62.870 60.000 0.00 0.00 43.63 4.09
5743 6843 2.362329 GATCGCAGAGGACAGGGAGC 62.362 65.000 0.00 0.00 43.63 4.70
5744 6844 1.739049 GATCGCAGAGGACAGGGAG 59.261 63.158 0.00 0.00 43.63 4.30
5745 6845 1.758514 GGATCGCAGAGGACAGGGA 60.759 63.158 0.00 0.00 43.63 4.20
5746 6846 2.818132 GGATCGCAGAGGACAGGG 59.182 66.667 0.00 0.00 43.63 4.45
5747 6847 1.459455 ATCGGATCGCAGAGGACAGG 61.459 60.000 0.00 0.00 43.63 4.00
5748 6848 0.387202 AATCGGATCGCAGAGGACAG 59.613 55.000 0.00 0.00 43.63 3.51
5749 6849 0.385751 GAATCGGATCGCAGAGGACA 59.614 55.000 0.00 0.00 43.63 4.02
5750 6850 0.661780 CGAATCGGATCGCAGAGGAC 60.662 60.000 0.00 0.00 43.63 3.85
5751 6851 1.654774 CGAATCGGATCGCAGAGGA 59.345 57.895 0.00 0.00 43.63 3.71
5752 6852 4.235065 CGAATCGGATCGCAGAGG 57.765 61.111 0.00 0.00 43.63 3.69
5758 6858 1.395944 CGTTCATTGCGAATCGGATCG 60.396 52.381 4.35 6.43 45.41 3.69
5759 6859 1.657538 GCGTTCATTGCGAATCGGATC 60.658 52.381 4.35 0.00 35.63 3.36
5760 6860 0.304705 GCGTTCATTGCGAATCGGAT 59.695 50.000 4.35 0.00 35.63 4.18
5761 6861 0.739462 AGCGTTCATTGCGAATCGGA 60.739 50.000 4.35 0.00 35.63 4.55
5762 6862 0.096976 AAGCGTTCATTGCGAATCGG 59.903 50.000 4.35 0.00 35.63 4.18
5763 6863 1.174352 CAAGCGTTCATTGCGAATCG 58.826 50.000 0.00 0.00 35.63 3.34
5764 6864 0.909843 GCAAGCGTTCATTGCGAATC 59.090 50.000 0.00 0.00 43.15 2.52
5765 6865 3.020102 GCAAGCGTTCATTGCGAAT 57.980 47.368 0.00 0.00 43.15 3.34
5766 6866 4.531708 GCAAGCGTTCATTGCGAA 57.468 50.000 0.00 0.00 43.15 4.70
5770 6870 0.455633 GGCAGAGCAAGCGTTCATTG 60.456 55.000 0.00 0.00 0.00 2.82
5771 6871 1.589716 GGGCAGAGCAAGCGTTCATT 61.590 55.000 0.00 0.00 0.00 2.57
5772 6872 2.042831 GGGCAGAGCAAGCGTTCAT 61.043 57.895 0.00 0.00 0.00 2.57
5773 6873 2.669569 GGGCAGAGCAAGCGTTCA 60.670 61.111 0.00 0.00 0.00 3.18
5774 6874 2.359230 AGGGCAGAGCAAGCGTTC 60.359 61.111 0.00 0.00 0.00 3.95
5775 6875 2.475371 ATCAGGGCAGAGCAAGCGTT 62.475 55.000 0.00 0.00 0.00 4.84
5776 6876 1.617018 TATCAGGGCAGAGCAAGCGT 61.617 55.000 0.00 0.00 0.00 5.07
5777 6877 0.879400 CTATCAGGGCAGAGCAAGCG 60.879 60.000 0.00 0.00 0.00 4.68
5778 6878 0.179936 ACTATCAGGGCAGAGCAAGC 59.820 55.000 0.00 0.00 0.00 4.01
5779 6879 1.209019 ACACTATCAGGGCAGAGCAAG 59.791 52.381 0.00 0.00 0.00 4.01
5780 6880 1.065926 CACACTATCAGGGCAGAGCAA 60.066 52.381 0.00 0.00 0.00 3.91
5781 6881 0.538584 CACACTATCAGGGCAGAGCA 59.461 55.000 0.00 0.00 0.00 4.26
5782 6882 0.813210 GCACACTATCAGGGCAGAGC 60.813 60.000 0.00 0.00 0.00 4.09
5783 6883 0.829333 AGCACACTATCAGGGCAGAG 59.171 55.000 0.00 0.00 0.00 3.35
5784 6884 1.065926 CAAGCACACTATCAGGGCAGA 60.066 52.381 0.00 0.00 0.00 4.26
5785 6885 1.065926 TCAAGCACACTATCAGGGCAG 60.066 52.381 0.00 0.00 0.00 4.85
5786 6886 0.983467 TCAAGCACACTATCAGGGCA 59.017 50.000 0.00 0.00 0.00 5.36
5787 6887 1.373570 GTCAAGCACACTATCAGGGC 58.626 55.000 0.00 0.00 0.00 5.19
5788 6888 1.204704 TCGTCAAGCACACTATCAGGG 59.795 52.381 0.00 0.00 0.00 4.45
5789 6889 2.534298 CTCGTCAAGCACACTATCAGG 58.466 52.381 0.00 0.00 0.00 3.86
5790 6890 2.094494 ACCTCGTCAAGCACACTATCAG 60.094 50.000 0.00 0.00 0.00 2.90
5791 6891 1.893137 ACCTCGTCAAGCACACTATCA 59.107 47.619 0.00 0.00 0.00 2.15
5792 6892 2.531206 GACCTCGTCAAGCACACTATC 58.469 52.381 0.00 0.00 32.09 2.08
5793 6893 1.135373 CGACCTCGTCAAGCACACTAT 60.135 52.381 0.00 0.00 32.09 2.12
5794 6894 0.240145 CGACCTCGTCAAGCACACTA 59.760 55.000 0.00 0.00 32.09 2.74
5795 6895 1.007271 CGACCTCGTCAAGCACACT 60.007 57.895 0.00 0.00 32.09 3.55
5796 6896 3.538841 CGACCTCGTCAAGCACAC 58.461 61.111 0.00 0.00 32.09 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.