Multiple sequence alignment - TraesCS2D01G234400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G234400 chr2D 100.000 6002 0 0 1 6002 215827670 215833671 0.000000e+00 11084.0
1 TraesCS2D01G234400 chr2D 93.291 313 19 2 1 311 640638710 640639022 1.520000e-125 460.0
2 TraesCS2D01G234400 chr2D 84.058 69 9 2 767 834 644672778 644672711 1.400000e-06 65.8
3 TraesCS2D01G234400 chr2A 98.282 3143 41 4 818 3959 306145863 306148993 0.000000e+00 5493.0
4 TraesCS2D01G234400 chr2A 96.481 1165 17 12 4299 5449 306149298 306150452 0.000000e+00 1903.0
5 TraesCS2D01G234400 chr2A 96.334 491 17 1 5512 6002 306150455 306150944 0.000000e+00 806.0
6 TraesCS2D01G234400 chr2A 98.421 190 3 0 3956 4145 306149116 306149305 9.640000e-88 335.0
7 TraesCS2D01G234400 chr2A 100.000 35 0 0 4565 4599 306149627 306149661 1.400000e-06 65.8
8 TraesCS2D01G234400 chr2B 98.084 3132 53 2 828 3959 272670523 272673647 0.000000e+00 5445.0
9 TraesCS2D01G234400 chr2B 93.362 1145 30 4 4302 5413 272673771 272674902 0.000000e+00 1652.0
10 TraesCS2D01G234400 chr2B 98.134 268 5 0 5623 5890 272674903 272675170 9.110000e-128 468.0
11 TraesCS2D01G234400 chr2B 97.938 97 2 0 5906 6002 272681401 272681497 1.030000e-37 169.0
12 TraesCS2D01G234400 chr2B 85.294 68 6 3 767 831 711316663 711316729 3.880000e-07 67.6
13 TraesCS2D01G234400 chr2B 84.286 70 8 2 767 834 17586042 17585974 1.400000e-06 65.8
14 TraesCS2D01G234400 chr7B 87.662 462 44 9 313 768 490711850 490711396 5.330000e-145 525.0
15 TraesCS2D01G234400 chr7B 87.907 215 19 3 5411 5625 477049511 477049718 4.650000e-61 246.0
16 TraesCS2D01G234400 chr7B 94.000 50 1 2 783 832 604108731 604108684 2.320000e-09 75.0
17 TraesCS2D01G234400 chr7B 86.567 67 8 1 767 832 412341357 412341291 8.340000e-09 73.1
18 TraesCS2D01G234400 chr7B 93.617 47 2 1 784 829 89956342 89956388 1.080000e-07 69.4
19 TraesCS2D01G234400 chr7B 84.058 69 7 4 767 832 619662583 619662650 5.020000e-06 63.9
20 TraesCS2D01G234400 chr7A 87.179 468 45 12 313 772 174272061 174272521 8.920000e-143 518.0
21 TraesCS2D01G234400 chr7A 98.907 183 2 0 3958 4140 563515845 563515663 1.610000e-85 327.0
22 TraesCS2D01G234400 chr7A 98.039 153 3 0 4146 4298 428822173 428822325 3.570000e-67 267.0
23 TraesCS2D01G234400 chr7A 85.507 69 9 1 767 835 27258402 27258335 3.000000e-08 71.3
24 TraesCS2D01G234400 chr7A 84.848 66 9 1 767 832 58654336 58654400 1.400000e-06 65.8
25 TraesCS2D01G234400 chr5D 86.994 469 50 6 313 772 391292630 391293096 8.920000e-143 518.0
26 TraesCS2D01G234400 chr5D 86.200 471 51 11 313 775 102028679 102028215 1.160000e-136 497.0
27 TraesCS2D01G234400 chr5D 93.291 313 19 2 1 311 550194552 550194240 1.520000e-125 460.0
28 TraesCS2D01G234400 chr5D 98.907 183 2 0 3958 4140 503225013 503224831 1.610000e-85 327.0
29 TraesCS2D01G234400 chr5D 98.052 154 3 0 4146 4299 257502136 257502289 9.920000e-68 268.0
30 TraesCS2D01G234400 chr5D 89.394 66 7 0 767 832 520081676 520081741 3.850000e-12 84.2
31 TraesCS2D01G234400 chr7D 86.780 469 47 11 313 772 635087480 635087942 5.370000e-140 508.0
32 TraesCS2D01G234400 chr7D 85.987 471 54 8 313 775 238938947 238938481 1.500000e-135 494.0
33 TraesCS2D01G234400 chr7D 94.249 313 16 2 1 311 164483839 164484151 1.510000e-130 477.0
34 TraesCS2D01G234400 chr7D 93.291 313 19 2 1 311 635086853 635087165 1.520000e-125 460.0
35 TraesCS2D01G234400 chr7D 98.734 158 1 1 4143 4299 617790748 617790591 4.580000e-71 279.0
36 TraesCS2D01G234400 chr7D 87.892 223 23 3 5411 5633 34482514 34482296 5.970000e-65 259.0
37 TraesCS2D01G234400 chr1A 86.667 465 50 9 313 768 494310154 494309693 6.940000e-139 505.0
38 TraesCS2D01G234400 chr1A 98.907 183 2 0 3958 4140 278527445 278527627 1.610000e-85 327.0
39 TraesCS2D01G234400 chr1A 89.252 214 20 3 5411 5624 559234356 559234146 1.280000e-66 265.0
40 TraesCS2D01G234400 chr1A 88.837 215 21 3 5412 5626 559234146 559234357 1.660000e-65 261.0
41 TraesCS2D01G234400 chr1A 95.092 163 6 2 4136 4298 99618355 99618515 7.720000e-64 255.0
42 TraesCS2D01G234400 chr6D 86.258 473 50 10 313 775 404320844 404320377 3.230000e-137 499.0
43 TraesCS2D01G234400 chr6D 93.930 313 17 2 1 311 404321471 404321159 7.040000e-129 472.0
44 TraesCS2D01G234400 chr6D 93.291 313 19 2 1 311 58106299 58106611 1.520000e-125 460.0
45 TraesCS2D01G234400 chr6D 98.907 183 2 0 3958 4140 168264464 168264282 1.610000e-85 327.0
46 TraesCS2D01G234400 chr6D 98.710 155 2 0 4144 4298 450831963 450832117 5.930000e-70 276.0
47 TraesCS2D01G234400 chr6D 84.475 219 29 3 5411 5627 8003502 8003717 1.690000e-50 211.0
48 TraesCS2D01G234400 chr6D 91.489 47 4 0 783 829 389334122 389334076 1.400000e-06 65.8
49 TraesCS2D01G234400 chr1D 85.835 473 56 9 313 775 476808527 476808998 5.400000e-135 492.0
50 TraesCS2D01G234400 chr1D 98.693 153 2 0 4146 4298 418199432 418199584 7.670000e-69 272.0
51 TraesCS2D01G234400 chr1D 85.333 225 24 5 5411 5626 455075278 455075502 2.180000e-54 224.0
52 TraesCS2D01G234400 chr1D 91.489 47 2 2 783 829 250749325 250749281 5.020000e-06 63.9
53 TraesCS2D01G234400 chr1D 88.235 51 3 3 782 831 465150942 465150894 2.340000e-04 58.4
54 TraesCS2D01G234400 chr3D 93.930 313 17 2 1 311 526969338 526969650 7.040000e-129 472.0
55 TraesCS2D01G234400 chr3D 93.291 313 19 2 1 311 572089450 572089762 1.520000e-125 460.0
56 TraesCS2D01G234400 chr3D 100.000 153 0 0 4146 4298 26165847 26165695 3.540000e-72 283.0
57 TraesCS2D01G234400 chr3D 86.667 60 6 2 775 833 414776347 414776405 1.400000e-06 65.8
58 TraesCS2D01G234400 chr3D 90.196 51 4 1 784 833 435313345 435313295 1.400000e-06 65.8
59 TraesCS2D01G234400 chr4D 93.291 313 19 2 1 311 70339373 70339685 1.520000e-125 460.0
60 TraesCS2D01G234400 chr4D 86.364 66 7 2 767 831 505533194 505533258 3.000000e-08 71.3
61 TraesCS2D01G234400 chr4D 97.143 35 1 0 798 832 39156319 39156285 6.500000e-05 60.2
62 TraesCS2D01G234400 chr4D 89.583 48 3 2 783 829 483455968 483456014 6.500000e-05 60.2
63 TraesCS2D01G234400 chr4D 92.683 41 2 1 794 833 337057245 337057285 2.340000e-04 58.4
64 TraesCS2D01G234400 chr4D 85.714 56 4 4 775 829 489954844 489954896 8.400000e-04 56.5
65 TraesCS2D01G234400 chr4D 94.286 35 2 0 798 832 488340371 488340337 3.000000e-03 54.7
66 TraesCS2D01G234400 chrUn 98.907 183 2 0 3958 4140 352978466 352978284 1.610000e-85 327.0
67 TraesCS2D01G234400 chrUn 100.000 30 0 0 805 834 455755287 455755258 8.400000e-04 56.5
68 TraesCS2D01G234400 chr3A 98.907 183 2 0 3958 4140 66010827 66011009 1.610000e-85 327.0
69 TraesCS2D01G234400 chr3A 98.907 183 2 0 3958 4140 495098507 495098325 1.610000e-85 327.0
70 TraesCS2D01G234400 chr3A 98.907 183 2 0 3958 4140 750740321 750740503 1.610000e-85 327.0
71 TraesCS2D01G234400 chr3A 98.039 153 2 1 4146 4298 593355867 593355716 1.280000e-66 265.0
72 TraesCS2D01G234400 chr5B 99.355 155 1 0 4145 4299 291786853 291787007 1.270000e-71 281.0
73 TraesCS2D01G234400 chr5B 88.235 51 4 2 782 831 491945359 491945408 6.500000e-05 60.2
74 TraesCS2D01G234400 chr5A 86.638 232 24 4 5404 5635 59700885 59701109 3.590000e-62 250.0
75 TraesCS2D01G234400 chr5A 86.977 215 21 5 5412 5626 466949264 466949471 1.010000e-57 235.0
76 TraesCS2D01G234400 chr5A 83.333 66 9 2 767 831 535564075 535564139 6.500000e-05 60.2
77 TraesCS2D01G234400 chr4A 90.741 108 5 4 4123 4227 238397458 238397563 8.110000e-29 139.0
78 TraesCS2D01G234400 chr4A 87.692 65 6 2 770 833 450856596 450856533 2.320000e-09 75.0
79 TraesCS2D01G234400 chr3B 85.135 74 6 4 767 838 720238784 720238714 3.000000e-08 71.3
80 TraesCS2D01G234400 chr6A 100.000 34 0 0 798 831 577761900 577761867 5.020000e-06 63.9
81 TraesCS2D01G234400 chr6A 91.111 45 2 2 789 832 574247629 574247586 6.500000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G234400 chr2D 215827670 215833671 6001 False 11084.000000 11084 100.000000 1 6002 1 chr2D.!!$F1 6001
1 TraesCS2D01G234400 chr2A 306145863 306150944 5081 False 1720.560000 5493 97.903600 818 6002 5 chr2A.!!$F1 5184
2 TraesCS2D01G234400 chr2B 272670523 272675170 4647 False 2521.666667 5445 96.526667 828 5890 3 chr2B.!!$F3 5062
3 TraesCS2D01G234400 chr7D 635086853 635087942 1089 False 484.000000 508 90.035500 1 772 2 chr7D.!!$F2 771
4 TraesCS2D01G234400 chr6D 404320377 404321471 1094 True 485.500000 499 90.094000 1 775 2 chr6D.!!$R3 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 885 0.032416 ATCTAGCGGTAGTGGGTGGT 60.032 55.000 20.32 0.0 0.00 4.16 F
640 956 0.034896 AGGCGAATCTGGACGTTTGT 59.965 50.000 0.00 0.0 0.00 2.83 F
1500 1816 0.036952 ATGCCTTCCGTGTCACTGAG 60.037 55.000 0.65 0.0 0.00 3.35 F
1510 1826 2.143925 GTGTCACTGAGTTTGTAGCCC 58.856 52.381 0.00 0.0 0.00 5.19 F
2452 2768 4.696877 TGATTGATGAGCGTTCTGAATGTT 59.303 37.500 11.01 5.1 0.00 2.71 F
4180 4622 0.248949 GTAAGGCGACCTAAGGCGAG 60.249 60.000 4.41 0.0 39.33 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1816 0.313987 GGTTGTGCTGGGCTACAAAC 59.686 55.000 0.0 0.0 38.40 2.93 R
1948 2264 1.412710 GAGTGGGTGATTATGCTCCGA 59.587 52.381 0.0 0.0 0.00 4.55 R
2605 2921 3.777106 TGCAGACAAGAACTCCATCTT 57.223 42.857 0.0 0.0 40.23 2.40 R
3596 3912 0.044855 ACCTACAATCTGCCCCCTCT 59.955 55.000 0.0 0.0 0.00 3.69 R
4223 4665 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.0 0.0 0.00 6.13 R
5474 5963 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.0 0.0 37.69 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.152118 AGGTCCTGTGTGGCCACTA 60.152 57.895 34.75 22.67 42.34 2.74
23 24 2.221299 TCCTGTGTGGCCACTACCC 61.221 63.158 34.75 20.16 42.34 3.69
40 41 0.038166 CCCCAAGTACCACACTGCAT 59.962 55.000 0.00 0.00 37.63 3.96
62 63 1.209127 CCTTTGGCGCCTTTGTACG 59.791 57.895 29.70 8.61 0.00 3.67
115 116 2.618442 TCCAATGCATGCAGTCGATA 57.382 45.000 26.69 6.34 0.00 2.92
132 133 2.034685 CGATACTTCCAAGCATCCGAGA 59.965 50.000 0.00 0.00 0.00 4.04
140 141 3.019564 CCAAGCATCCGAGAAAATCCTT 58.980 45.455 0.00 0.00 0.00 3.36
152 153 4.572909 AGAAAATCCTTTTGCTGCATTCC 58.427 39.130 1.84 0.00 28.91 3.01
172 173 2.901975 TGCTAGGATCCGAGCAGTT 58.098 52.632 36.92 8.96 46.65 3.16
173 174 0.747255 TGCTAGGATCCGAGCAGTTC 59.253 55.000 36.92 15.57 46.65 3.01
174 175 1.036707 GCTAGGATCCGAGCAGTTCT 58.963 55.000 34.20 5.82 42.81 3.01
176 177 2.544903 GCTAGGATCCGAGCAGTTCTTC 60.545 54.545 34.20 8.71 42.81 2.87
177 178 1.561643 AGGATCCGAGCAGTTCTTCA 58.438 50.000 5.98 0.00 0.00 3.02
179 180 2.003301 GGATCCGAGCAGTTCTTCAAC 58.997 52.381 0.00 0.00 0.00 3.18
180 181 2.612972 GGATCCGAGCAGTTCTTCAACA 60.613 50.000 0.00 0.00 34.60 3.33
225 228 2.572333 AAACACTGCCACCACTGCCT 62.572 55.000 0.00 0.00 0.00 4.75
284 287 1.227234 CATGCGCCCATAGTCGTCA 60.227 57.895 4.18 0.00 0.00 4.35
329 645 1.500108 CTCCATGAGATGCTCTTCGC 58.500 55.000 0.00 0.00 39.77 4.70
338 654 4.070552 GCTCTTCGCCCTGGACGT 62.071 66.667 1.51 0.00 0.00 4.34
365 681 2.668120 GCTTCCTCCTCCAGCAGCT 61.668 63.158 0.00 0.00 33.45 4.24
366 682 1.989620 CTTCCTCCTCCAGCAGCTT 59.010 57.895 0.00 0.00 0.00 3.74
367 683 0.107752 CTTCCTCCTCCAGCAGCTTC 60.108 60.000 0.00 0.00 0.00 3.86
368 684 1.892819 TTCCTCCTCCAGCAGCTTCG 61.893 60.000 0.00 0.00 0.00 3.79
369 685 2.654079 CCTCCTCCAGCAGCTTCGT 61.654 63.158 0.00 0.00 0.00 3.85
370 686 1.447489 CTCCTCCAGCAGCTTCGTG 60.447 63.158 0.00 0.00 0.00 4.35
371 687 1.881903 CTCCTCCAGCAGCTTCGTGA 61.882 60.000 0.00 0.00 0.00 4.35
372 688 1.447489 CCTCCAGCAGCTTCGTGAG 60.447 63.158 0.00 0.00 0.00 3.51
383 699 2.358369 TCGTGAGCGACTCCTCGT 60.358 61.111 14.93 0.00 42.81 4.18
384 700 1.964891 TCGTGAGCGACTCCTCGTT 60.965 57.895 14.93 0.00 42.81 3.85
385 701 1.797933 CGTGAGCGACTCCTCGTTG 60.798 63.158 4.73 0.00 42.33 4.10
386 702 1.286260 GTGAGCGACTCCTCGTTGT 59.714 57.895 4.73 0.00 42.33 3.32
387 703 0.729816 GTGAGCGACTCCTCGTTGTC 60.730 60.000 4.73 0.00 42.33 3.18
388 704 0.889638 TGAGCGACTCCTCGTTGTCT 60.890 55.000 4.73 0.00 42.33 3.41
389 705 0.455295 GAGCGACTCCTCGTTGTCTG 60.455 60.000 0.00 0.00 42.33 3.51
390 706 0.889638 AGCGACTCCTCGTTGTCTGA 60.890 55.000 0.00 0.00 42.33 3.27
391 707 0.455295 GCGACTCCTCGTTGTCTGAG 60.455 60.000 0.00 0.00 42.33 3.35
392 708 0.875728 CGACTCCTCGTTGTCTGAGT 59.124 55.000 0.00 0.00 40.60 3.41
393 709 1.135916 CGACTCCTCGTTGTCTGAGTC 60.136 57.143 8.14 8.14 46.46 3.36
394 710 1.200484 GACTCCTCGTTGTCTGAGTCC 59.800 57.143 7.16 0.00 45.01 3.85
395 711 1.248486 CTCCTCGTTGTCTGAGTCCA 58.752 55.000 0.00 0.00 0.00 4.02
396 712 0.959553 TCCTCGTTGTCTGAGTCCAC 59.040 55.000 0.00 0.00 0.00 4.02
397 713 0.038159 CCTCGTTGTCTGAGTCCACC 60.038 60.000 0.00 0.00 0.00 4.61
398 714 0.387367 CTCGTTGTCTGAGTCCACCG 60.387 60.000 0.00 0.00 0.00 4.94
399 715 2.022129 CGTTGTCTGAGTCCACCGC 61.022 63.158 0.00 0.00 0.00 5.68
400 716 1.668151 GTTGTCTGAGTCCACCGCC 60.668 63.158 0.00 0.00 0.00 6.13
401 717 3.220999 TTGTCTGAGTCCACCGCCG 62.221 63.158 0.00 0.00 0.00 6.46
402 718 3.371063 GTCTGAGTCCACCGCCGA 61.371 66.667 0.00 0.00 0.00 5.54
403 719 3.062466 TCTGAGTCCACCGCCGAG 61.062 66.667 0.00 0.00 0.00 4.63
404 720 4.803426 CTGAGTCCACCGCCGAGC 62.803 72.222 0.00 0.00 0.00 5.03
406 722 4.803426 GAGTCCACCGCCGAGCAG 62.803 72.222 0.00 0.00 0.00 4.24
410 726 4.680237 CCACCGCCGAGCAGACAA 62.680 66.667 0.00 0.00 0.00 3.18
411 727 2.664851 CACCGCCGAGCAGACAAA 60.665 61.111 0.00 0.00 0.00 2.83
412 728 2.034879 CACCGCCGAGCAGACAAAT 61.035 57.895 0.00 0.00 0.00 2.32
413 729 1.741770 ACCGCCGAGCAGACAAATC 60.742 57.895 0.00 0.00 0.00 2.17
414 730 2.697425 CGCCGAGCAGACAAATCG 59.303 61.111 0.00 0.00 36.24 3.34
415 731 2.401195 GCCGAGCAGACAAATCGC 59.599 61.111 0.00 0.00 35.18 4.58
416 732 3.093278 CCGAGCAGACAAATCGCC 58.907 61.111 0.00 0.00 35.18 5.54
417 733 2.697425 CGAGCAGACAAATCGCCG 59.303 61.111 0.00 0.00 0.00 6.46
418 734 1.805539 CGAGCAGACAAATCGCCGA 60.806 57.895 0.00 0.00 0.00 5.54
419 735 1.351430 CGAGCAGACAAATCGCCGAA 61.351 55.000 0.00 0.00 0.00 4.30
420 736 0.095417 GAGCAGACAAATCGCCGAAC 59.905 55.000 0.00 0.00 0.00 3.95
421 737 0.602638 AGCAGACAAATCGCCGAACA 60.603 50.000 0.00 0.00 0.00 3.18
422 738 0.452784 GCAGACAAATCGCCGAACAC 60.453 55.000 0.00 0.00 0.00 3.32
423 739 0.165944 CAGACAAATCGCCGAACACC 59.834 55.000 0.00 0.00 0.00 4.16
424 740 0.034896 AGACAAATCGCCGAACACCT 59.965 50.000 0.00 0.00 0.00 4.00
425 741 0.165944 GACAAATCGCCGAACACCTG 59.834 55.000 0.00 0.00 0.00 4.00
426 742 1.234615 ACAAATCGCCGAACACCTGG 61.235 55.000 0.00 0.00 0.00 4.45
448 764 2.972505 CGTGGTGGGTGCACAGTC 60.973 66.667 20.43 8.12 0.00 3.51
449 765 2.972505 GTGGTGGGTGCACAGTCG 60.973 66.667 20.43 0.00 0.00 4.18
450 766 3.157949 TGGTGGGTGCACAGTCGA 61.158 61.111 20.43 2.13 0.00 4.20
451 767 2.347490 GGTGGGTGCACAGTCGAT 59.653 61.111 20.43 0.00 0.00 3.59
452 768 1.188871 TGGTGGGTGCACAGTCGATA 61.189 55.000 20.43 0.00 0.00 2.92
453 769 0.178068 GGTGGGTGCACAGTCGATAT 59.822 55.000 20.43 0.00 0.00 1.63
454 770 1.571919 GTGGGTGCACAGTCGATATC 58.428 55.000 20.43 0.00 0.00 1.63
455 771 0.464036 TGGGTGCACAGTCGATATCC 59.536 55.000 20.43 7.61 0.00 2.59
456 772 0.249911 GGGTGCACAGTCGATATCCC 60.250 60.000 20.43 2.12 0.00 3.85
457 773 0.753262 GGTGCACAGTCGATATCCCT 59.247 55.000 20.43 0.00 0.00 4.20
458 774 1.269831 GGTGCACAGTCGATATCCCTC 60.270 57.143 20.43 0.00 0.00 4.30
459 775 1.040646 TGCACAGTCGATATCCCTCC 58.959 55.000 0.00 0.00 0.00 4.30
460 776 0.318762 GCACAGTCGATATCCCTCCC 59.681 60.000 0.00 0.00 0.00 4.30
461 777 2.002505 CACAGTCGATATCCCTCCCT 57.997 55.000 0.00 0.00 0.00 4.20
462 778 1.615883 CACAGTCGATATCCCTCCCTG 59.384 57.143 0.00 0.00 0.00 4.45
463 779 0.605589 CAGTCGATATCCCTCCCTGC 59.394 60.000 0.00 0.00 0.00 4.85
464 780 0.896019 AGTCGATATCCCTCCCTGCG 60.896 60.000 0.00 0.00 0.00 5.18
465 781 2.262915 CGATATCCCTCCCTGCGC 59.737 66.667 0.00 0.00 0.00 6.09
466 782 2.262915 GATATCCCTCCCTGCGCG 59.737 66.667 0.00 0.00 0.00 6.86
467 783 3.302347 GATATCCCTCCCTGCGCGG 62.302 68.421 9.96 9.96 0.00 6.46
487 803 3.488090 GGAGCGCCGGAAAACTCG 61.488 66.667 5.05 0.00 0.00 4.18
488 804 4.148645 GAGCGCCGGAAAACTCGC 62.149 66.667 5.05 10.20 46.95 5.03
492 808 3.431725 GCCGGAAAACTCGCCCAG 61.432 66.667 5.05 0.00 0.00 4.45
493 809 2.746277 CCGGAAAACTCGCCCAGG 60.746 66.667 0.00 0.00 0.00 4.45
494 810 2.345991 CGGAAAACTCGCCCAGGA 59.654 61.111 0.00 0.00 0.00 3.86
495 811 1.302192 CGGAAAACTCGCCCAGGAA 60.302 57.895 0.00 0.00 0.00 3.36
496 812 1.298859 CGGAAAACTCGCCCAGGAAG 61.299 60.000 0.00 0.00 0.00 3.46
497 813 0.960861 GGAAAACTCGCCCAGGAAGG 60.961 60.000 0.00 0.00 37.03 3.46
498 814 0.250770 GAAAACTCGCCCAGGAAGGT 60.251 55.000 0.00 0.00 34.66 3.50
499 815 0.537371 AAAACTCGCCCAGGAAGGTG 60.537 55.000 0.00 0.00 38.86 4.00
500 816 1.415672 AAACTCGCCCAGGAAGGTGA 61.416 55.000 0.00 0.00 44.15 4.02
501 817 1.201429 AACTCGCCCAGGAAGGTGAT 61.201 55.000 0.00 0.00 45.19 3.06
502 818 1.153289 CTCGCCCAGGAAGGTGATG 60.153 63.158 0.00 0.00 45.19 3.07
503 819 2.124570 CGCCCAGGAAGGTGATGG 60.125 66.667 0.00 0.00 39.99 3.51
504 820 2.669133 CGCCCAGGAAGGTGATGGA 61.669 63.158 0.00 0.00 39.99 3.41
505 821 1.225704 GCCCAGGAAGGTGATGGAG 59.774 63.158 0.00 0.00 36.09 3.86
506 822 1.274703 GCCCAGGAAGGTGATGGAGA 61.275 60.000 0.00 0.00 36.09 3.71
507 823 0.835941 CCCAGGAAGGTGATGGAGAG 59.164 60.000 0.00 0.00 36.09 3.20
508 824 0.835941 CCAGGAAGGTGATGGAGAGG 59.164 60.000 0.00 0.00 36.09 3.69
509 825 1.577736 CAGGAAGGTGATGGAGAGGT 58.422 55.000 0.00 0.00 0.00 3.85
510 826 1.912043 CAGGAAGGTGATGGAGAGGTT 59.088 52.381 0.00 0.00 0.00 3.50
511 827 1.912043 AGGAAGGTGATGGAGAGGTTG 59.088 52.381 0.00 0.00 0.00 3.77
512 828 1.680249 GGAAGGTGATGGAGAGGTTGC 60.680 57.143 0.00 0.00 0.00 4.17
513 829 0.329596 AAGGTGATGGAGAGGTTGCC 59.670 55.000 0.00 0.00 0.00 4.52
514 830 1.450312 GGTGATGGAGAGGTTGCCG 60.450 63.158 0.00 0.00 0.00 5.69
515 831 1.296715 GTGATGGAGAGGTTGCCGT 59.703 57.895 0.00 0.00 0.00 5.68
516 832 1.021390 GTGATGGAGAGGTTGCCGTG 61.021 60.000 0.00 0.00 0.00 4.94
517 833 1.450312 GATGGAGAGGTTGCCGTGG 60.450 63.158 0.00 0.00 0.00 4.94
518 834 3.628646 ATGGAGAGGTTGCCGTGGC 62.629 63.158 3.30 3.30 42.35 5.01
520 836 4.373116 GAGAGGTTGCCGTGGCGA 62.373 66.667 6.37 0.60 45.51 5.54
521 837 3.876589 GAGAGGTTGCCGTGGCGAA 62.877 63.158 1.47 0.00 45.51 4.70
522 838 2.975799 GAGGTTGCCGTGGCGAAA 60.976 61.111 1.47 0.00 45.51 3.46
523 839 3.249973 GAGGTTGCCGTGGCGAAAC 62.250 63.158 1.47 4.00 45.51 2.78
524 840 4.337060 GGTTGCCGTGGCGAAACC 62.337 66.667 15.00 15.00 45.51 3.27
525 841 4.337060 GTTGCCGTGGCGAAACCC 62.337 66.667 1.47 0.00 45.51 4.11
526 842 4.572571 TTGCCGTGGCGAAACCCT 62.573 61.111 6.37 0.00 45.51 4.34
528 844 4.699522 GCCGTGGCGAAACCCTCT 62.700 66.667 0.00 0.00 37.83 3.69
529 845 2.032071 CCGTGGCGAAACCCTCTT 59.968 61.111 0.00 0.00 37.83 2.85
530 846 1.599797 CCGTGGCGAAACCCTCTTT 60.600 57.895 0.00 0.00 37.83 2.52
531 847 1.170290 CCGTGGCGAAACCCTCTTTT 61.170 55.000 0.00 0.00 37.83 2.27
532 848 0.666374 CGTGGCGAAACCCTCTTTTT 59.334 50.000 0.00 0.00 37.83 1.94
546 862 3.688086 TTTTTCGGCGGGGAATGG 58.312 55.556 7.21 0.00 0.00 3.16
547 863 2.641277 TTTTTCGGCGGGGAATGGC 61.641 57.895 7.21 0.00 0.00 4.40
552 868 2.034221 GGCGGGGAATGGCCTATC 59.966 66.667 3.32 1.43 45.93 2.08
553 869 2.529744 GGCGGGGAATGGCCTATCT 61.530 63.158 3.32 0.00 45.93 1.98
554 870 1.198759 GGCGGGGAATGGCCTATCTA 61.199 60.000 3.32 0.00 45.93 1.98
555 871 0.250513 GCGGGGAATGGCCTATCTAG 59.749 60.000 3.32 0.00 36.66 2.43
556 872 0.250513 CGGGGAATGGCCTATCTAGC 59.749 60.000 3.32 0.00 36.66 3.42
557 873 0.250513 GGGGAATGGCCTATCTAGCG 59.749 60.000 3.32 0.00 36.66 4.26
558 874 0.250513 GGGAATGGCCTATCTAGCGG 59.749 60.000 3.32 0.00 36.66 5.52
559 875 0.977395 GGAATGGCCTATCTAGCGGT 59.023 55.000 3.32 0.00 0.00 5.68
560 876 2.176889 GGAATGGCCTATCTAGCGGTA 58.823 52.381 3.32 0.00 0.00 4.02
561 877 2.166664 GGAATGGCCTATCTAGCGGTAG 59.833 54.545 15.51 15.51 0.00 3.18
562 878 2.606751 ATGGCCTATCTAGCGGTAGT 57.393 50.000 20.32 10.92 0.00 2.73
563 879 1.617322 TGGCCTATCTAGCGGTAGTG 58.383 55.000 20.32 11.92 0.00 2.74
564 880 0.889306 GGCCTATCTAGCGGTAGTGG 59.111 60.000 20.32 19.54 0.00 4.00
565 881 0.889306 GCCTATCTAGCGGTAGTGGG 59.111 60.000 20.32 18.11 0.00 4.61
566 882 1.822457 GCCTATCTAGCGGTAGTGGGT 60.822 57.143 20.32 8.69 0.00 4.51
567 883 1.887198 CCTATCTAGCGGTAGTGGGTG 59.113 57.143 20.32 8.26 0.00 4.61
568 884 1.887198 CTATCTAGCGGTAGTGGGTGG 59.113 57.143 20.32 5.14 0.00 4.61
569 885 0.032416 ATCTAGCGGTAGTGGGTGGT 60.032 55.000 20.32 0.00 0.00 4.16
570 886 0.968901 TCTAGCGGTAGTGGGTGGTG 60.969 60.000 20.32 0.00 0.00 4.17
571 887 1.956629 CTAGCGGTAGTGGGTGGTGG 61.957 65.000 13.51 0.00 0.00 4.61
572 888 4.404098 GCGGTAGTGGGTGGTGGG 62.404 72.222 0.00 0.00 0.00 4.61
573 889 4.404098 CGGTAGTGGGTGGTGGGC 62.404 72.222 0.00 0.00 0.00 5.36
574 890 4.404098 GGTAGTGGGTGGTGGGCG 62.404 72.222 0.00 0.00 0.00 6.13
575 891 4.404098 GTAGTGGGTGGTGGGCGG 62.404 72.222 0.00 0.00 0.00 6.13
633 949 2.768344 GGGGGAGGCGAATCTGGA 60.768 66.667 0.00 0.00 0.00 3.86
634 950 2.506472 GGGGAGGCGAATCTGGAC 59.494 66.667 0.00 0.00 0.00 4.02
635 951 2.107141 GGGAGGCGAATCTGGACG 59.893 66.667 0.00 0.00 0.00 4.79
636 952 2.722201 GGGAGGCGAATCTGGACGT 61.722 63.158 0.00 0.00 0.00 4.34
637 953 1.218316 GGAGGCGAATCTGGACGTT 59.782 57.895 0.00 0.00 0.00 3.99
638 954 0.391263 GGAGGCGAATCTGGACGTTT 60.391 55.000 0.00 0.00 0.00 3.60
639 955 0.721718 GAGGCGAATCTGGACGTTTG 59.278 55.000 0.00 0.00 0.00 2.93
640 956 0.034896 AGGCGAATCTGGACGTTTGT 59.965 50.000 0.00 0.00 0.00 2.83
641 957 0.442699 GGCGAATCTGGACGTTTGTC 59.557 55.000 0.00 0.00 44.72 3.18
642 958 1.429463 GCGAATCTGGACGTTTGTCT 58.571 50.000 0.00 0.00 44.83 3.41
643 959 1.798813 GCGAATCTGGACGTTTGTCTT 59.201 47.619 0.00 0.00 44.83 3.01
644 960 2.411547 GCGAATCTGGACGTTTGTCTTG 60.412 50.000 0.00 0.00 44.83 3.02
645 961 3.057019 CGAATCTGGACGTTTGTCTTGA 58.943 45.455 0.00 0.00 44.83 3.02
646 962 3.120991 CGAATCTGGACGTTTGTCTTGAC 60.121 47.826 0.00 0.00 44.83 3.18
647 963 3.753294 ATCTGGACGTTTGTCTTGACT 57.247 42.857 0.00 0.00 44.83 3.41
648 964 3.536956 TCTGGACGTTTGTCTTGACTT 57.463 42.857 0.00 0.00 44.83 3.01
649 965 3.869065 TCTGGACGTTTGTCTTGACTTT 58.131 40.909 0.00 0.00 44.83 2.66
650 966 4.258543 TCTGGACGTTTGTCTTGACTTTT 58.741 39.130 0.00 0.00 44.83 2.27
651 967 4.331717 TCTGGACGTTTGTCTTGACTTTTC 59.668 41.667 0.00 0.00 44.83 2.29
652 968 3.062909 TGGACGTTTGTCTTGACTTTTCG 59.937 43.478 0.00 4.99 44.83 3.46
653 969 3.027029 GACGTTTGTCTTGACTTTTCGC 58.973 45.455 0.00 0.00 42.08 4.70
654 970 2.223180 ACGTTTGTCTTGACTTTTCGCC 60.223 45.455 2.35 0.00 0.00 5.54
655 971 2.031683 CGTTTGTCTTGACTTTTCGCCT 59.968 45.455 2.35 0.00 0.00 5.52
656 972 3.363178 GTTTGTCTTGACTTTTCGCCTG 58.637 45.455 2.35 0.00 0.00 4.85
657 973 2.613026 TGTCTTGACTTTTCGCCTGA 57.387 45.000 2.35 0.00 0.00 3.86
658 974 2.210116 TGTCTTGACTTTTCGCCTGAC 58.790 47.619 2.35 0.00 0.00 3.51
659 975 2.210116 GTCTTGACTTTTCGCCTGACA 58.790 47.619 0.00 0.00 0.00 3.58
660 976 2.221981 GTCTTGACTTTTCGCCTGACAG 59.778 50.000 0.00 0.00 0.00 3.51
661 977 2.158957 TCTTGACTTTTCGCCTGACAGT 60.159 45.455 0.93 0.00 0.00 3.55
662 978 1.581934 TGACTTTTCGCCTGACAGTG 58.418 50.000 0.93 0.00 0.00 3.66
663 979 1.134521 TGACTTTTCGCCTGACAGTGT 60.135 47.619 0.00 0.00 0.00 3.55
664 980 1.261619 GACTTTTCGCCTGACAGTGTG 59.738 52.381 0.00 0.23 0.00 3.82
665 981 0.588252 CTTTTCGCCTGACAGTGTGG 59.412 55.000 0.00 0.00 0.00 4.17
666 982 1.444119 TTTTCGCCTGACAGTGTGGC 61.444 55.000 13.41 13.41 42.94 5.01
667 983 3.825160 TTCGCCTGACAGTGTGGCC 62.825 63.158 16.71 0.00 43.42 5.36
669 985 4.269523 GCCTGACAGTGTGGCCCA 62.270 66.667 12.58 0.00 40.71 5.36
670 986 2.033141 CCTGACAGTGTGGCCCAG 59.967 66.667 0.00 1.11 0.00 4.45
671 987 2.519622 CCTGACAGTGTGGCCCAGA 61.520 63.158 0.00 0.00 0.00 3.86
672 988 1.302033 CTGACAGTGTGGCCCAGAC 60.302 63.158 2.06 2.06 0.00 3.51
673 989 2.357517 GACAGTGTGGCCCAGACG 60.358 66.667 5.24 3.53 32.70 4.18
674 990 3.161450 ACAGTGTGGCCCAGACGT 61.161 61.111 5.24 4.17 32.70 4.34
675 991 2.666190 CAGTGTGGCCCAGACGTG 60.666 66.667 5.24 1.06 32.70 4.49
676 992 3.941188 AGTGTGGCCCAGACGTGG 61.941 66.667 5.24 0.00 44.56 4.94
683 999 4.410400 CCCAGACGTGGCTTCCCC 62.410 72.222 0.00 0.00 43.44 4.81
684 1000 3.322466 CCAGACGTGGCTTCCCCT 61.322 66.667 0.00 0.00 36.89 4.79
685 1001 2.750350 CAGACGTGGCTTCCCCTT 59.250 61.111 0.00 0.00 0.00 3.95
686 1002 1.376037 CAGACGTGGCTTCCCCTTC 60.376 63.158 0.00 0.00 0.00 3.46
687 1003 2.046217 GACGTGGCTTCCCCTTCC 60.046 66.667 0.00 0.00 0.00 3.46
688 1004 3.952628 GACGTGGCTTCCCCTTCCG 62.953 68.421 0.00 0.00 0.00 4.30
694 1010 4.162690 CTTCCCCTTCCGCCGGAG 62.163 72.222 5.05 0.00 31.21 4.63
734 1050 4.410400 CTGGGTTCGGCCTGGGAC 62.410 72.222 0.00 0.00 37.43 4.46
785 1101 2.558821 CGGCATCGGCGTGAAAAA 59.441 55.556 6.85 0.00 46.33 1.94
800 1116 1.229076 AAAAAGTCGCCCTGTGGGT 59.771 52.632 4.42 0.00 46.51 4.51
801 1117 0.822121 AAAAAGTCGCCCTGTGGGTC 60.822 55.000 4.42 0.00 46.51 4.46
802 1118 1.705997 AAAAGTCGCCCTGTGGGTCT 61.706 55.000 4.42 0.00 46.51 3.85
803 1119 2.397413 AAAGTCGCCCTGTGGGTCTG 62.397 60.000 4.42 0.00 46.51 3.51
804 1120 3.626924 GTCGCCCTGTGGGTCTGT 61.627 66.667 4.42 0.00 46.51 3.41
805 1121 2.847234 TCGCCCTGTGGGTCTGTT 60.847 61.111 4.42 0.00 46.51 3.16
806 1122 2.669569 CGCCCTGTGGGTCTGTTG 60.670 66.667 4.42 0.00 46.51 3.33
807 1123 2.282462 GCCCTGTGGGTCTGTTGG 60.282 66.667 4.42 0.00 46.51 3.77
808 1124 2.436109 CCCTGTGGGTCTGTTGGG 59.564 66.667 0.00 0.00 38.25 4.12
809 1125 2.436109 CCTGTGGGTCTGTTGGGG 59.564 66.667 0.00 0.00 0.00 4.96
810 1126 2.436109 CTGTGGGTCTGTTGGGGG 59.564 66.667 0.00 0.00 0.00 5.40
811 1127 3.868200 CTGTGGGTCTGTTGGGGGC 62.868 68.421 0.00 0.00 0.00 5.80
858 1174 2.094675 CATCCATGACCAAGACCAACC 58.905 52.381 0.00 0.00 0.00 3.77
1067 1383 1.392710 CCGACTACCTCCGGCTCATT 61.393 60.000 0.00 0.00 39.22 2.57
1500 1816 0.036952 ATGCCTTCCGTGTCACTGAG 60.037 55.000 0.65 0.00 0.00 3.35
1506 1822 3.491964 CCTTCCGTGTCACTGAGTTTGTA 60.492 47.826 0.65 0.00 0.00 2.41
1510 1826 2.143925 GTGTCACTGAGTTTGTAGCCC 58.856 52.381 0.00 0.00 0.00 5.19
1599 1915 4.764336 CACACCATTGCCGCTGCG 62.764 66.667 16.34 16.34 41.78 5.18
1948 2264 7.412853 ACATACCGGGTTGCTAAATTTATTT 57.587 32.000 4.31 0.00 0.00 1.40
2452 2768 4.696877 TGATTGATGAGCGTTCTGAATGTT 59.303 37.500 11.01 5.10 0.00 2.71
2605 2921 5.047731 CAGTGTCTCTTTGACTGTGAGGATA 60.048 44.000 0.00 0.00 45.54 2.59
2841 3157 5.592104 TCTTCAAGCGTTATGAGACCATA 57.408 39.130 0.00 0.00 34.31 2.74
3755 4071 4.047627 TCTAGTCATGTGAGGACTTCCA 57.952 45.455 0.00 0.00 42.77 3.53
3788 4104 0.696143 TGGGGAGAAGACCACCACAA 60.696 55.000 0.00 0.00 33.94 3.33
3877 4193 8.058667 TGTTAGGAGATACGAGATTGTGTTAA 57.941 34.615 0.00 0.00 0.00 2.01
4042 4484 3.358118 TGTAGACACATGGATCCGTACA 58.642 45.455 6.04 3.41 0.00 2.90
4047 4489 3.031013 ACACATGGATCCGTACATCTCA 58.969 45.455 6.04 0.00 0.00 3.27
4142 4584 8.407064 AGAGAAAAGAGAAATCATGATCAATGC 58.593 33.333 9.06 0.00 36.11 3.56
4143 4585 8.294954 AGAAAAGAGAAATCATGATCAATGCT 57.705 30.769 9.06 0.00 36.11 3.79
4144 4586 8.191446 AGAAAAGAGAAATCATGATCAATGCTG 58.809 33.333 9.06 0.00 36.11 4.41
4145 4587 5.440234 AGAGAAATCATGATCAATGCTGC 57.560 39.130 9.06 0.00 36.11 5.25
4146 4588 4.887655 AGAGAAATCATGATCAATGCTGCA 59.112 37.500 9.06 4.13 36.11 4.41
4147 4589 5.536538 AGAGAAATCATGATCAATGCTGCAT 59.463 36.000 9.81 9.81 36.11 3.96
4148 4590 6.040955 AGAGAAATCATGATCAATGCTGCATT 59.959 34.615 21.48 21.48 36.11 3.56
4159 4601 4.714851 CAATGCTGCATTGTTTTTAAGGC 58.285 39.130 35.48 0.00 44.12 4.35
4160 4602 2.402305 TGCTGCATTGTTTTTAAGGCG 58.598 42.857 0.00 0.00 39.98 5.52
4161 4603 1.726248 GCTGCATTGTTTTTAAGGCGG 59.274 47.619 0.00 0.00 44.20 6.13
4162 4604 2.866065 GCTGCATTGTTTTTAAGGCGGT 60.866 45.455 5.96 0.00 43.52 5.68
4163 4605 3.612955 GCTGCATTGTTTTTAAGGCGGTA 60.613 43.478 5.96 0.00 43.52 4.02
4164 4606 4.551388 CTGCATTGTTTTTAAGGCGGTAA 58.449 39.130 0.00 0.00 39.98 2.85
4165 4607 4.551388 TGCATTGTTTTTAAGGCGGTAAG 58.449 39.130 0.00 0.00 39.98 2.34
4166 4608 3.924073 GCATTGTTTTTAAGGCGGTAAGG 59.076 43.478 0.00 0.00 0.00 2.69
4174 4616 2.894919 GGCGGTAAGGCGACCTAA 59.105 61.111 9.52 0.00 37.34 2.69
4175 4617 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.00 37.34 2.18
4176 4618 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.00 37.34 2.69
4177 4619 1.227176 CGGTAAGGCGACCTAAGGC 60.227 63.158 9.52 0.00 37.34 4.35
4178 4620 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.00 39.33 5.52
4179 4621 1.669999 GGTAAGGCGACCTAAGGCGA 61.670 60.000 4.41 0.00 39.33 5.54
4180 4622 0.248949 GTAAGGCGACCTAAGGCGAG 60.249 60.000 4.41 0.00 39.33 5.03
4181 4623 2.012902 TAAGGCGACCTAAGGCGAGC 62.013 60.000 4.41 0.00 39.33 5.03
4182 4624 4.143333 GGCGACCTAAGGCGAGCA 62.143 66.667 4.41 0.00 0.00 4.26
4183 4625 2.886124 GCGACCTAAGGCGAGCAC 60.886 66.667 4.41 0.00 0.00 4.40
4184 4626 2.202756 CGACCTAAGGCGAGCACC 60.203 66.667 0.00 0.00 0.00 5.01
4185 4627 2.978824 GACCTAAGGCGAGCACCA 59.021 61.111 0.00 0.00 0.00 4.17
4186 4628 1.448013 GACCTAAGGCGAGCACCAC 60.448 63.158 0.00 0.00 0.00 4.16
4187 4629 2.125106 CCTAAGGCGAGCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
4188 4630 2.125106 CTAAGGCGAGCACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
4189 4631 4.077184 TAAGGCGAGCACCACCCG 62.077 66.667 0.00 0.00 0.00 5.28
4196 4638 3.775654 AGCACCACCCGCTCTAGC 61.776 66.667 0.00 0.00 33.35 3.42
4236 4678 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
4237 4679 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
4238 4680 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
4239 4681 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
4240 4682 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
4241 4683 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
4242 4684 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
4243 4685 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
4244 4686 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
4245 4687 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
4246 4688 1.600413 GGCATATTTGTAAGGCGCTGC 60.600 52.381 7.64 4.69 0.00 5.25
4281 4723 1.596934 CTAAGCGTCCAAGGCAGGA 59.403 57.895 0.00 0.00 34.64 3.86
4295 4737 2.785713 GCAGGACGCCTTAAAAACAA 57.214 45.000 0.00 0.00 32.94 2.83
4299 4741 2.625790 AGGACGCCTTAAAAACAATGCA 59.374 40.909 0.00 0.00 0.00 3.96
4300 4742 3.068873 AGGACGCCTTAAAAACAATGCAA 59.931 39.130 0.00 0.00 0.00 4.08
4663 5120 9.924650 TCTTTAAGTTATAACTGGTTCTGACTC 57.075 33.333 18.70 0.00 39.66 3.36
5185 5673 5.877012 CAGTTGGAGAAGAGCTGCTAAATTA 59.123 40.000 0.15 0.00 35.71 1.40
5313 5801 8.352752 TCATGACGAGTACATATGAAATTCAC 57.647 34.615 10.38 2.30 0.00 3.18
5441 5930 2.749865 CCACAATGTAGTGCGCCCG 61.750 63.158 4.18 0.00 38.18 6.13
5457 5946 3.515286 CGCGCTTCCCGAGGTCTA 61.515 66.667 5.56 0.00 40.02 2.59
5458 5947 2.890371 GCGCTTCCCGAGGTCTAA 59.110 61.111 0.00 0.00 40.02 2.10
5459 5948 1.227002 GCGCTTCCCGAGGTCTAAG 60.227 63.158 0.00 0.00 40.02 2.18
5460 5949 1.946475 GCGCTTCCCGAGGTCTAAGT 61.946 60.000 0.00 0.00 40.02 2.24
5461 5950 0.531200 CGCTTCCCGAGGTCTAAGTT 59.469 55.000 0.00 0.00 40.02 2.66
5462 5951 1.067071 CGCTTCCCGAGGTCTAAGTTT 60.067 52.381 0.00 0.00 40.02 2.66
5463 5952 2.347731 GCTTCCCGAGGTCTAAGTTTG 58.652 52.381 0.00 0.00 0.00 2.93
5464 5953 2.028385 GCTTCCCGAGGTCTAAGTTTGA 60.028 50.000 0.00 0.00 0.00 2.69
5465 5954 3.586892 CTTCCCGAGGTCTAAGTTTGAC 58.413 50.000 8.72 8.72 0.00 3.18
5482 5971 8.582433 AAGTTTGACCATAAATTTAACCAACG 57.418 30.769 1.21 0.00 0.00 4.10
5483 5972 7.942990 AGTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
5484 5973 8.079809 AGTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 0.00 0.00 4.18
5485 5974 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
5486 5975 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
5487 5976 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
5488 5977 5.122711 ACCATAAATTTAACCAACGAGACCG 59.877 40.000 1.21 0.00 42.50 4.79
5489 5978 5.352016 CCATAAATTTAACCAACGAGACCGA 59.648 40.000 1.21 0.00 39.50 4.69
5490 5979 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
5491 5980 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
5492 5981 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
5493 5982 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
5494 5983 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
5517 6006 3.016736 CGGGAGCAAAAATCATACCACT 58.983 45.455 0.00 0.00 0.00 4.00
5536 6025 5.095490 CCACTGAATTCGTATTTTTGCTCC 58.905 41.667 0.04 0.00 0.00 4.70
5538 6027 4.764823 ACTGAATTCGTATTTTTGCTCCCA 59.235 37.500 0.04 0.00 0.00 4.37
5552 6041 0.321122 CTCCCACTGCAGTTGGTCTC 60.321 60.000 30.32 0.00 33.02 3.36
5611 6100 1.002366 GTGAGCGCTCTACATTGTGG 58.998 55.000 35.27 0.00 0.00 4.17
5620 6109 3.813443 CTCTACATTGTGGAATGGAGGG 58.187 50.000 4.33 0.34 46.90 4.30
5700 6189 4.274459 GCTAAACAGCATCCTTATGGACAG 59.726 45.833 0.00 0.00 46.51 3.51
5855 6345 9.365311 CAGTTTAATTAGTGTTTACGTCACAAG 57.635 33.333 8.39 0.00 38.16 3.16
5890 6380 0.106769 TGTCCTTGCTGCCTTGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
5911 6401 7.933577 TGTTGAACTGTGATCTCAAATTCTAGT 59.066 33.333 16.43 2.03 31.21 2.57
5918 6408 9.743057 CTGTGATCTCAAATTCTAGTTAGTAGG 57.257 37.037 0.00 0.00 0.00 3.18
5920 6410 7.654116 GTGATCTCAAATTCTAGTTAGTAGGGC 59.346 40.741 0.00 0.00 0.00 5.19
5953 6443 6.149973 TGCCTTCAGTAATCTTGAAGACAATG 59.850 38.462 14.66 0.00 40.89 2.82
5974 6464 8.100791 ACAATGTTCTTATCTTGGTAGCTACAA 58.899 33.333 24.75 11.99 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.349542 TGCAGTGTGGTACTTGGGGT 61.350 55.000 0.00 0.00 37.60 4.95
23 24 1.453155 GGATGCAGTGTGGTACTTGG 58.547 55.000 0.00 0.00 37.60 3.61
62 63 1.005450 TCCATTTGCTTGGTAGGGGAC 59.995 52.381 1.68 0.00 38.01 4.46
115 116 2.859165 TTTCTCGGATGCTTGGAAGT 57.141 45.000 0.00 0.00 0.00 3.01
152 153 1.007964 CTGCTCGGATCCTAGCACG 60.008 63.158 31.38 23.42 43.56 5.34
172 173 1.003003 TGCGATCACCCATGTTGAAGA 59.997 47.619 0.00 0.00 0.00 2.87
173 174 1.452110 TGCGATCACCCATGTTGAAG 58.548 50.000 0.00 0.00 0.00 3.02
174 175 1.811965 CTTGCGATCACCCATGTTGAA 59.188 47.619 0.00 0.00 0.00 2.69
176 177 1.167851 ACTTGCGATCACCCATGTTG 58.832 50.000 0.00 0.00 0.00 3.33
177 178 2.779755 TACTTGCGATCACCCATGTT 57.220 45.000 0.00 0.00 0.00 2.71
179 180 3.614159 CAATACTTGCGATCACCCATG 57.386 47.619 0.00 0.00 0.00 3.66
225 228 5.182487 TGAGTGTTTCTACAAGTTCTGCAA 58.818 37.500 0.00 0.00 35.69 4.08
284 287 0.250513 GAGCTCCCGGTGATTCACTT 59.749 55.000 16.02 0.00 34.40 3.16
329 645 4.873129 CGATGCCGACGTCCAGGG 62.873 72.222 10.58 6.80 38.22 4.45
338 654 3.849951 GGAGGAAGCCGATGCCGA 61.850 66.667 0.00 0.00 38.69 5.54
374 690 2.622546 GACTCAGACAACGAGGAGTC 57.377 55.000 5.06 5.06 46.39 3.36
375 691 1.249407 GGACTCAGACAACGAGGAGT 58.751 55.000 0.00 0.00 42.90 3.85
376 692 1.068194 GTGGACTCAGACAACGAGGAG 60.068 57.143 0.00 0.00 34.66 3.69
377 693 0.959553 GTGGACTCAGACAACGAGGA 59.040 55.000 0.00 0.00 34.66 3.71
378 694 0.038159 GGTGGACTCAGACAACGAGG 60.038 60.000 0.00 0.00 34.66 4.63
379 695 3.498676 GGTGGACTCAGACAACGAG 57.501 57.895 0.00 0.00 36.53 4.18
381 697 4.245054 CGGTGGACTCAGACAACG 57.755 61.111 0.00 0.00 41.70 4.10
382 698 1.668151 GGCGGTGGACTCAGACAAC 60.668 63.158 0.00 0.00 0.00 3.32
383 699 2.741092 GGCGGTGGACTCAGACAA 59.259 61.111 0.00 0.00 0.00 3.18
384 700 3.680786 CGGCGGTGGACTCAGACA 61.681 66.667 0.00 0.00 0.00 3.41
385 701 3.343788 CTCGGCGGTGGACTCAGAC 62.344 68.421 7.21 0.00 0.00 3.51
386 702 3.062466 CTCGGCGGTGGACTCAGA 61.062 66.667 7.21 0.00 0.00 3.27
387 703 4.803426 GCTCGGCGGTGGACTCAG 62.803 72.222 7.21 0.00 0.00 3.35
389 705 4.803426 CTGCTCGGCGGTGGACTC 62.803 72.222 7.21 0.00 0.00 3.36
393 709 4.680237 TTGTCTGCTCGGCGGTGG 62.680 66.667 7.21 0.00 36.18 4.61
394 710 1.970917 GATTTGTCTGCTCGGCGGTG 61.971 60.000 7.21 1.17 36.18 4.94
395 711 1.741770 GATTTGTCTGCTCGGCGGT 60.742 57.895 7.21 0.00 36.18 5.68
396 712 2.802667 CGATTTGTCTGCTCGGCGG 61.803 63.158 7.21 0.00 36.06 6.13
397 713 2.697425 CGATTTGTCTGCTCGGCG 59.303 61.111 0.00 0.00 0.00 6.46
398 714 2.401195 GCGATTTGTCTGCTCGGC 59.599 61.111 0.00 0.00 33.17 5.54
399 715 2.802667 CGGCGATTTGTCTGCTCGG 61.803 63.158 0.00 0.00 33.17 4.63
400 716 1.351430 TTCGGCGATTTGTCTGCTCG 61.351 55.000 11.76 0.00 35.57 5.03
401 717 0.095417 GTTCGGCGATTTGTCTGCTC 59.905 55.000 11.76 0.00 0.00 4.26
402 718 0.602638 TGTTCGGCGATTTGTCTGCT 60.603 50.000 11.76 0.00 0.00 4.24
403 719 0.452784 GTGTTCGGCGATTTGTCTGC 60.453 55.000 11.76 0.00 0.00 4.26
404 720 0.165944 GGTGTTCGGCGATTTGTCTG 59.834 55.000 11.76 0.00 0.00 3.51
405 721 0.034896 AGGTGTTCGGCGATTTGTCT 59.965 50.000 11.76 2.33 0.00 3.41
406 722 0.165944 CAGGTGTTCGGCGATTTGTC 59.834 55.000 11.76 0.00 0.00 3.18
407 723 1.234615 CCAGGTGTTCGGCGATTTGT 61.235 55.000 11.76 0.00 0.00 2.83
408 724 1.501741 CCAGGTGTTCGGCGATTTG 59.498 57.895 11.76 5.09 0.00 2.32
409 725 2.332654 GCCAGGTGTTCGGCGATTT 61.333 57.895 11.76 0.00 38.82 2.17
410 726 2.746277 GCCAGGTGTTCGGCGATT 60.746 61.111 11.76 0.00 38.82 3.34
431 747 2.972505 GACTGTGCACCCACCACG 60.973 66.667 15.69 0.00 41.35 4.94
432 748 2.731691 ATCGACTGTGCACCCACCAC 62.732 60.000 15.69 0.00 41.35 4.16
433 749 1.188871 TATCGACTGTGCACCCACCA 61.189 55.000 15.69 0.00 41.35 4.17
434 750 0.178068 ATATCGACTGTGCACCCACC 59.822 55.000 15.69 0.00 41.35 4.61
435 751 1.571919 GATATCGACTGTGCACCCAC 58.428 55.000 15.69 4.31 42.40 4.61
436 752 0.464036 GGATATCGACTGTGCACCCA 59.536 55.000 15.69 0.00 0.00 4.51
437 753 0.249911 GGGATATCGACTGTGCACCC 60.250 60.000 15.69 4.32 0.00 4.61
438 754 0.753262 AGGGATATCGACTGTGCACC 59.247 55.000 15.69 0.00 0.00 5.01
439 755 1.269831 GGAGGGATATCGACTGTGCAC 60.270 57.143 10.75 10.75 0.00 4.57
440 756 1.040646 GGAGGGATATCGACTGTGCA 58.959 55.000 3.56 0.00 0.00 4.57
441 757 0.318762 GGGAGGGATATCGACTGTGC 59.681 60.000 3.56 0.00 0.00 4.57
442 758 1.615883 CAGGGAGGGATATCGACTGTG 59.384 57.143 3.56 0.00 0.00 3.66
443 759 2.002505 CAGGGAGGGATATCGACTGT 57.997 55.000 3.56 0.00 0.00 3.55
444 760 0.605589 GCAGGGAGGGATATCGACTG 59.394 60.000 3.56 5.23 0.00 3.51
445 761 0.896019 CGCAGGGAGGGATATCGACT 60.896 60.000 0.00 0.00 0.00 4.18
446 762 1.587054 CGCAGGGAGGGATATCGAC 59.413 63.158 0.00 0.00 0.00 4.20
447 763 2.276116 GCGCAGGGAGGGATATCGA 61.276 63.158 0.30 0.00 0.00 3.59
448 764 2.262915 GCGCAGGGAGGGATATCG 59.737 66.667 0.30 0.00 0.00 2.92
449 765 2.262915 CGCGCAGGGAGGGATATC 59.737 66.667 8.75 0.00 46.37 1.63
450 766 3.314331 CCGCGCAGGGAGGGATAT 61.314 66.667 8.75 0.00 46.37 1.63
470 786 3.488090 CGAGTTTTCCGGCGCTCC 61.488 66.667 7.64 0.00 0.00 4.70
471 787 4.148645 GCGAGTTTTCCGGCGCTC 62.149 66.667 7.64 0.75 45.41 5.03
476 792 2.741486 TTCCTGGGCGAGTTTTCCGG 62.741 60.000 0.00 0.00 0.00 5.14
477 793 1.298859 CTTCCTGGGCGAGTTTTCCG 61.299 60.000 0.00 0.00 0.00 4.30
478 794 0.960861 CCTTCCTGGGCGAGTTTTCC 60.961 60.000 0.00 0.00 0.00 3.13
479 795 0.250770 ACCTTCCTGGGCGAGTTTTC 60.251 55.000 0.00 0.00 41.11 2.29
480 796 0.537371 CACCTTCCTGGGCGAGTTTT 60.537 55.000 0.00 0.00 41.11 2.43
481 797 1.073199 CACCTTCCTGGGCGAGTTT 59.927 57.895 0.00 0.00 41.11 2.66
482 798 1.201429 ATCACCTTCCTGGGCGAGTT 61.201 55.000 0.00 0.00 41.11 3.01
483 799 1.613630 ATCACCTTCCTGGGCGAGT 60.614 57.895 0.00 0.00 41.11 4.18
484 800 1.153289 CATCACCTTCCTGGGCGAG 60.153 63.158 0.00 0.00 41.11 5.03
485 801 2.669133 CCATCACCTTCCTGGGCGA 61.669 63.158 0.00 0.00 41.11 5.54
486 802 2.124570 CCATCACCTTCCTGGGCG 60.125 66.667 0.00 0.00 41.11 6.13
487 803 1.225704 CTCCATCACCTTCCTGGGC 59.774 63.158 0.00 0.00 41.11 5.36
488 804 0.835941 CTCTCCATCACCTTCCTGGG 59.164 60.000 0.00 0.00 41.11 4.45
489 805 0.835941 CCTCTCCATCACCTTCCTGG 59.164 60.000 0.00 0.00 42.93 4.45
490 806 1.577736 ACCTCTCCATCACCTTCCTG 58.422 55.000 0.00 0.00 0.00 3.86
491 807 1.912043 CAACCTCTCCATCACCTTCCT 59.088 52.381 0.00 0.00 0.00 3.36
492 808 1.680249 GCAACCTCTCCATCACCTTCC 60.680 57.143 0.00 0.00 0.00 3.46
493 809 1.680249 GGCAACCTCTCCATCACCTTC 60.680 57.143 0.00 0.00 0.00 3.46
494 810 0.329596 GGCAACCTCTCCATCACCTT 59.670 55.000 0.00 0.00 0.00 3.50
495 811 1.903877 CGGCAACCTCTCCATCACCT 61.904 60.000 0.00 0.00 0.00 4.00
496 812 1.450312 CGGCAACCTCTCCATCACC 60.450 63.158 0.00 0.00 0.00 4.02
497 813 1.021390 CACGGCAACCTCTCCATCAC 61.021 60.000 0.00 0.00 0.00 3.06
498 814 1.296392 CACGGCAACCTCTCCATCA 59.704 57.895 0.00 0.00 0.00 3.07
499 815 1.450312 CCACGGCAACCTCTCCATC 60.450 63.158 0.00 0.00 0.00 3.51
500 816 2.671070 CCACGGCAACCTCTCCAT 59.329 61.111 0.00 0.00 0.00 3.41
501 817 4.329545 GCCACGGCAACCTCTCCA 62.330 66.667 2.36 0.00 41.49 3.86
503 819 3.876589 TTCGCCACGGCAACCTCTC 62.877 63.158 9.11 0.00 42.06 3.20
504 820 3.469863 TTTCGCCACGGCAACCTCT 62.470 57.895 9.11 0.00 42.06 3.69
505 821 2.975799 TTTCGCCACGGCAACCTC 60.976 61.111 9.11 0.00 42.06 3.85
506 822 3.284449 GTTTCGCCACGGCAACCT 61.284 61.111 9.11 0.00 42.06 3.50
507 823 4.337060 GGTTTCGCCACGGCAACC 62.337 66.667 12.93 12.93 42.06 3.77
508 824 4.337060 GGGTTTCGCCACGGCAAC 62.337 66.667 9.11 5.83 42.06 4.17
509 825 4.572571 AGGGTTTCGCCACGGCAA 62.573 61.111 9.11 0.00 42.06 4.52
511 827 4.699522 AGAGGGTTTCGCCACGGC 62.700 66.667 0.00 0.00 39.65 5.68
512 828 1.170290 AAAAGAGGGTTTCGCCACGG 61.170 55.000 0.00 0.00 39.65 4.94
513 829 0.666374 AAAAAGAGGGTTTCGCCACG 59.334 50.000 0.00 0.00 39.65 4.94
529 845 2.641277 GCCATTCCCCGCCGAAAAA 61.641 57.895 0.00 0.00 0.00 1.94
530 846 3.065567 GCCATTCCCCGCCGAAAA 61.066 61.111 0.00 0.00 0.00 2.29
535 851 1.198759 TAGATAGGCCATTCCCCGCC 61.199 60.000 5.01 0.00 46.09 6.13
536 852 0.250513 CTAGATAGGCCATTCCCCGC 59.749 60.000 5.01 0.00 34.51 6.13
537 853 0.250513 GCTAGATAGGCCATTCCCCG 59.749 60.000 5.01 0.00 34.51 5.73
538 854 0.250513 CGCTAGATAGGCCATTCCCC 59.749 60.000 5.01 0.00 34.51 4.81
539 855 0.250513 CCGCTAGATAGGCCATTCCC 59.749 60.000 5.01 0.00 34.51 3.97
540 856 0.977395 ACCGCTAGATAGGCCATTCC 59.023 55.000 5.01 0.00 0.00 3.01
541 857 2.826725 ACTACCGCTAGATAGGCCATTC 59.173 50.000 5.01 0.10 0.00 2.67
542 858 2.563179 CACTACCGCTAGATAGGCCATT 59.437 50.000 5.01 0.00 0.00 3.16
543 859 2.171840 CACTACCGCTAGATAGGCCAT 58.828 52.381 5.01 0.00 0.00 4.40
544 860 1.617322 CACTACCGCTAGATAGGCCA 58.383 55.000 5.01 0.00 0.00 5.36
545 861 0.889306 CCACTACCGCTAGATAGGCC 59.111 60.000 0.00 0.00 0.00 5.19
546 862 0.889306 CCCACTACCGCTAGATAGGC 59.111 60.000 0.00 0.00 0.00 3.93
547 863 1.887198 CACCCACTACCGCTAGATAGG 59.113 57.143 0.00 0.00 0.00 2.57
548 864 1.887198 CCACCCACTACCGCTAGATAG 59.113 57.143 0.00 0.00 0.00 2.08
549 865 1.216175 ACCACCCACTACCGCTAGATA 59.784 52.381 0.00 0.00 0.00 1.98
550 866 0.032416 ACCACCCACTACCGCTAGAT 60.032 55.000 0.00 0.00 0.00 1.98
551 867 0.968901 CACCACCCACTACCGCTAGA 60.969 60.000 0.00 0.00 0.00 2.43
552 868 1.515954 CACCACCCACTACCGCTAG 59.484 63.158 0.00 0.00 0.00 3.42
553 869 1.985662 CCACCACCCACTACCGCTA 60.986 63.158 0.00 0.00 0.00 4.26
554 870 3.319198 CCACCACCCACTACCGCT 61.319 66.667 0.00 0.00 0.00 5.52
555 871 4.404098 CCCACCACCCACTACCGC 62.404 72.222 0.00 0.00 0.00 5.68
556 872 4.404098 GCCCACCACCCACTACCG 62.404 72.222 0.00 0.00 0.00 4.02
557 873 4.404098 CGCCCACCACCCACTACC 62.404 72.222 0.00 0.00 0.00 3.18
558 874 4.404098 CCGCCCACCACCCACTAC 62.404 72.222 0.00 0.00 0.00 2.73
616 932 2.768344 TCCAGATTCGCCTCCCCC 60.768 66.667 0.00 0.00 0.00 5.40
617 933 2.506472 GTCCAGATTCGCCTCCCC 59.494 66.667 0.00 0.00 0.00 4.81
618 934 2.107141 CGTCCAGATTCGCCTCCC 59.893 66.667 0.00 0.00 0.00 4.30
619 935 0.391263 AAACGTCCAGATTCGCCTCC 60.391 55.000 0.00 0.00 0.00 4.30
620 936 0.721718 CAAACGTCCAGATTCGCCTC 59.278 55.000 0.00 0.00 0.00 4.70
621 937 0.034896 ACAAACGTCCAGATTCGCCT 59.965 50.000 0.00 0.00 0.00 5.52
622 938 0.442699 GACAAACGTCCAGATTCGCC 59.557 55.000 0.00 0.00 0.00 5.54
623 939 1.429463 AGACAAACGTCCAGATTCGC 58.571 50.000 0.00 0.00 33.60 4.70
624 940 3.057019 TCAAGACAAACGTCCAGATTCG 58.943 45.455 0.00 0.00 33.60 3.34
625 941 4.058817 AGTCAAGACAAACGTCCAGATTC 58.941 43.478 2.72 0.00 33.60 2.52
626 942 4.073293 AGTCAAGACAAACGTCCAGATT 57.927 40.909 2.72 0.00 33.60 2.40
627 943 3.753294 AGTCAAGACAAACGTCCAGAT 57.247 42.857 2.72 0.00 33.60 2.90
628 944 3.536956 AAGTCAAGACAAACGTCCAGA 57.463 42.857 2.72 0.00 33.60 3.86
629 945 4.588278 GAAAAGTCAAGACAAACGTCCAG 58.412 43.478 2.72 0.00 33.60 3.86
630 946 3.062909 CGAAAAGTCAAGACAAACGTCCA 59.937 43.478 2.72 0.00 33.60 4.02
631 947 3.604392 CGAAAAGTCAAGACAAACGTCC 58.396 45.455 2.72 0.00 33.60 4.79
632 948 3.027029 GCGAAAAGTCAAGACAAACGTC 58.973 45.455 2.72 0.00 0.00 4.34
633 949 2.223180 GGCGAAAAGTCAAGACAAACGT 60.223 45.455 2.72 0.00 0.00 3.99
634 950 2.031683 AGGCGAAAAGTCAAGACAAACG 59.968 45.455 2.72 4.34 0.00 3.60
635 951 3.064820 TCAGGCGAAAAGTCAAGACAAAC 59.935 43.478 2.72 0.00 0.00 2.93
636 952 3.064820 GTCAGGCGAAAAGTCAAGACAAA 59.935 43.478 2.72 0.00 33.73 2.83
637 953 2.612212 GTCAGGCGAAAAGTCAAGACAA 59.388 45.455 2.72 0.00 33.73 3.18
638 954 2.210116 GTCAGGCGAAAAGTCAAGACA 58.790 47.619 2.72 0.00 33.73 3.41
639 955 2.210116 TGTCAGGCGAAAAGTCAAGAC 58.790 47.619 0.00 0.00 34.00 3.01
640 956 2.158957 ACTGTCAGGCGAAAAGTCAAGA 60.159 45.455 4.53 0.00 0.00 3.02
641 957 2.032549 CACTGTCAGGCGAAAAGTCAAG 60.033 50.000 4.53 0.00 0.00 3.02
642 958 1.939934 CACTGTCAGGCGAAAAGTCAA 59.060 47.619 4.53 0.00 0.00 3.18
643 959 1.134521 ACACTGTCAGGCGAAAAGTCA 60.135 47.619 4.53 0.00 0.00 3.41
644 960 1.261619 CACACTGTCAGGCGAAAAGTC 59.738 52.381 4.53 0.00 0.00 3.01
645 961 1.299541 CACACTGTCAGGCGAAAAGT 58.700 50.000 4.53 0.00 0.00 2.66
646 962 0.588252 CCACACTGTCAGGCGAAAAG 59.412 55.000 4.53 0.00 0.00 2.27
647 963 1.444119 GCCACACTGTCAGGCGAAAA 61.444 55.000 4.53 0.00 38.86 2.29
648 964 1.891919 GCCACACTGTCAGGCGAAA 60.892 57.895 4.53 0.00 38.86 3.46
649 965 2.280797 GCCACACTGTCAGGCGAA 60.281 61.111 4.53 0.00 38.86 4.70
653 969 2.033141 CTGGGCCACACTGTCAGG 59.967 66.667 0.00 0.00 0.00 3.86
654 970 1.302033 GTCTGGGCCACACTGTCAG 60.302 63.158 0.00 0.00 0.00 3.51
655 971 2.828868 GTCTGGGCCACACTGTCA 59.171 61.111 0.00 0.00 0.00 3.58
656 972 2.357517 CGTCTGGGCCACACTGTC 60.358 66.667 10.32 0.00 0.00 3.51
657 973 3.161450 ACGTCTGGGCCACACTGT 61.161 61.111 10.32 6.94 0.00 3.55
658 974 2.666190 CACGTCTGGGCCACACTG 60.666 66.667 10.32 6.34 0.00 3.66
659 975 3.941188 CCACGTCTGGGCCACACT 61.941 66.667 10.32 0.00 33.23 3.55
666 982 4.410400 GGGGAAGCCACGTCTGGG 62.410 72.222 0.00 0.00 38.13 4.45
667 983 2.804828 GAAGGGGAAGCCACGTCTGG 62.805 65.000 0.00 0.00 41.13 3.86
668 984 1.376037 GAAGGGGAAGCCACGTCTG 60.376 63.158 0.00 0.00 32.77 3.51
669 985 2.593956 GGAAGGGGAAGCCACGTCT 61.594 63.158 1.87 0.00 35.77 4.18
670 986 2.046217 GGAAGGGGAAGCCACGTC 60.046 66.667 0.00 0.00 34.73 4.34
671 987 4.016706 CGGAAGGGGAAGCCACGT 62.017 66.667 0.00 0.00 28.26 4.49
677 993 4.162690 CTCCGGCGGAAGGGGAAG 62.163 72.222 30.59 12.56 0.00 3.46
717 1033 4.410400 GTCCCAGGCCGAACCCAG 62.410 72.222 0.00 0.00 40.58 4.45
759 1075 4.000557 CCGATGCCGAATTCGCCG 62.001 66.667 22.36 19.14 38.22 6.46
760 1076 4.313675 GCCGATGCCGAATTCGCC 62.314 66.667 22.36 12.52 38.22 5.54
761 1077 4.649954 CGCCGATGCCGAATTCGC 62.650 66.667 22.36 17.11 38.22 4.70
762 1078 3.261951 ACGCCGATGCCGAATTCG 61.262 61.111 20.92 20.92 38.22 3.34
763 1079 1.701545 TTCACGCCGATGCCGAATTC 61.702 55.000 0.00 0.00 38.22 2.17
764 1080 1.302383 TTTCACGCCGATGCCGAATT 61.302 50.000 0.00 0.00 38.22 2.17
765 1081 1.302383 TTTTCACGCCGATGCCGAAT 61.302 50.000 0.00 0.00 38.22 3.34
766 1082 1.507974 TTTTTCACGCCGATGCCGAA 61.508 50.000 0.00 0.00 38.22 4.30
767 1083 1.961791 TTTTTCACGCCGATGCCGA 60.962 52.632 0.00 0.00 38.22 5.54
768 1084 2.558821 TTTTTCACGCCGATGCCG 59.441 55.556 0.00 0.00 0.00 5.69
782 1098 4.174305 CCCACAGGGCGACTTTTT 57.826 55.556 0.00 0.00 35.35 1.94
792 1108 2.436109 CCCCAACAGACCCACAGG 59.564 66.667 0.00 0.00 40.04 4.00
793 1109 2.436109 CCCCCAACAGACCCACAG 59.564 66.667 0.00 0.00 0.00 3.66
794 1110 3.897122 GCCCCCAACAGACCCACA 61.897 66.667 0.00 0.00 0.00 4.17
810 1126 3.934684 GAGCATCTTCAGCCGCGC 61.935 66.667 0.00 0.00 0.00 6.86
825 1141 4.514441 GGTCATGGATGAATGTGCTTAGAG 59.486 45.833 0.00 0.00 38.75 2.43
858 1174 0.530650 ATTAGCGCCATCGTGTGAGG 60.531 55.000 2.29 0.00 38.14 3.86
967 1283 2.907458 AGGGTTTGGAGGAATGAAGG 57.093 50.000 0.00 0.00 0.00 3.46
1067 1383 3.430497 CGGAGGAGGAGGGGGAGA 61.430 72.222 0.00 0.00 0.00 3.71
1173 1489 2.614013 ATTTGGGGCGAGGAGGGT 60.614 61.111 0.00 0.00 0.00 4.34
1500 1816 0.313987 GGTTGTGCTGGGCTACAAAC 59.686 55.000 0.00 0.00 38.40 2.93
1506 1822 4.603535 GGGTGGTTGTGCTGGGCT 62.604 66.667 0.00 0.00 0.00 5.19
1510 1826 3.357079 GAGCGGGTGGTTGTGCTG 61.357 66.667 0.00 0.00 37.91 4.41
1948 2264 1.412710 GAGTGGGTGATTATGCTCCGA 59.587 52.381 0.00 0.00 0.00 4.55
2605 2921 3.777106 TGCAGACAAGAACTCCATCTT 57.223 42.857 0.00 0.00 40.23 2.40
3596 3912 0.044855 ACCTACAATCTGCCCCCTCT 59.955 55.000 0.00 0.00 0.00 3.69
3755 4071 3.122480 TCTCCCCATGTTGGTGTATCAT 58.878 45.455 0.00 0.00 35.17 2.45
4042 4484 9.618890 TTCTATTGATTCTTTTCCGATTGAGAT 57.381 29.630 0.00 0.00 0.00 2.75
4047 4489 8.267894 TCTCCTTCTATTGATTCTTTTCCGATT 58.732 33.333 0.00 0.00 0.00 3.34
4124 4566 5.183014 TGCAGCATTGATCATGATTTCTC 57.817 39.130 10.14 0.00 34.31 2.87
4140 4582 2.402305 CGCCTTAAAAACAATGCAGCA 58.598 42.857 0.00 0.00 0.00 4.41
4141 4583 1.726248 CCGCCTTAAAAACAATGCAGC 59.274 47.619 0.00 0.00 0.00 5.25
4142 4584 3.025287 ACCGCCTTAAAAACAATGCAG 57.975 42.857 0.00 0.00 0.00 4.41
4143 4585 4.551388 CTTACCGCCTTAAAAACAATGCA 58.449 39.130 0.00 0.00 0.00 3.96
4144 4586 3.924073 CCTTACCGCCTTAAAAACAATGC 59.076 43.478 0.00 0.00 0.00 3.56
4145 4587 3.924073 GCCTTACCGCCTTAAAAACAATG 59.076 43.478 0.00 0.00 0.00 2.82
4146 4588 3.366577 CGCCTTACCGCCTTAAAAACAAT 60.367 43.478 0.00 0.00 0.00 2.71
4147 4589 2.030981 CGCCTTACCGCCTTAAAAACAA 60.031 45.455 0.00 0.00 0.00 2.83
4148 4590 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
4149 4591 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
4150 4592 1.805943 GTCGCCTTACCGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
4151 4593 1.441738 GTCGCCTTACCGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
4152 4594 0.391528 GGTCGCCTTACCGCCTTAAA 60.392 55.000 0.00 0.00 0.00 1.52
4153 4595 1.218854 GGTCGCCTTACCGCCTTAA 59.781 57.895 0.00 0.00 0.00 1.85
4154 4596 0.395586 TAGGTCGCCTTACCGCCTTA 60.396 55.000 3.71 0.00 44.77 2.69
4155 4597 1.259840 TTAGGTCGCCTTACCGCCTT 61.260 55.000 3.71 0.00 44.77 4.35
4156 4598 1.673808 CTTAGGTCGCCTTACCGCCT 61.674 60.000 3.71 0.00 44.77 5.52
4157 4599 1.227176 CTTAGGTCGCCTTACCGCC 60.227 63.158 3.71 0.00 44.77 6.13
4158 4600 1.227176 CCTTAGGTCGCCTTACCGC 60.227 63.158 3.71 0.00 44.77 5.68
4159 4601 1.227176 GCCTTAGGTCGCCTTACCG 60.227 63.158 0.00 0.00 44.77 4.02
4160 4602 1.227176 CGCCTTAGGTCGCCTTACC 60.227 63.158 0.00 0.00 40.06 2.85
4161 4603 0.248949 CTCGCCTTAGGTCGCCTTAC 60.249 60.000 9.56 0.00 34.61 2.34
4162 4604 2.012902 GCTCGCCTTAGGTCGCCTTA 62.013 60.000 9.56 0.00 34.61 2.69
4163 4605 2.893398 CTCGCCTTAGGTCGCCTT 59.107 61.111 9.56 0.00 34.61 4.35
4164 4606 3.839432 GCTCGCCTTAGGTCGCCT 61.839 66.667 9.56 3.87 37.71 5.52
4165 4607 4.143333 TGCTCGCCTTAGGTCGCC 62.143 66.667 9.56 5.02 0.00 5.54
4166 4608 2.886124 GTGCTCGCCTTAGGTCGC 60.886 66.667 9.56 6.05 0.00 5.19
4167 4609 2.202756 GGTGCTCGCCTTAGGTCG 60.203 66.667 0.00 4.42 0.00 4.79
4168 4610 1.448013 GTGGTGCTCGCCTTAGGTC 60.448 63.158 0.00 0.00 0.00 3.85
4169 4611 2.663196 GTGGTGCTCGCCTTAGGT 59.337 61.111 0.00 0.00 0.00 3.08
4170 4612 2.125106 GGTGGTGCTCGCCTTAGG 60.125 66.667 0.00 0.00 42.62 2.69
4171 4613 2.125106 GGGTGGTGCTCGCCTTAG 60.125 66.667 9.43 0.00 45.18 2.18
4172 4614 4.077184 CGGGTGGTGCTCGCCTTA 62.077 66.667 9.43 0.00 45.18 2.69
4217 4659 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
4218 4660 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
4219 4661 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
4220 4662 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
4221 4663 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
4222 4664 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
4223 4665 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
4224 4666 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
4225 4667 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
4226 4668 1.600413 GCAGCGCCTTACAAATATGCC 60.600 52.381 2.29 0.00 0.00 4.40
4227 4669 1.600413 GGCAGCGCCTTACAAATATGC 60.600 52.381 2.29 2.54 46.69 3.14
4228 4670 2.405892 GGCAGCGCCTTACAAATATG 57.594 50.000 2.29 0.00 46.69 1.78
4276 4718 2.785713 TTGTTTTTAAGGCGTCCTGC 57.214 45.000 0.00 0.00 45.38 4.85
4281 4723 3.186205 GCATTGCATTGTTTTTAAGGCGT 59.814 39.130 10.11 0.00 39.98 5.68
4282 4724 3.432933 AGCATTGCATTGTTTTTAAGGCG 59.567 39.130 11.91 0.00 39.98 5.52
4283 4725 4.213906 ACAGCATTGCATTGTTTTTAAGGC 59.786 37.500 11.91 0.00 37.81 4.35
4284 4726 5.697633 AGACAGCATTGCATTGTTTTTAAGG 59.302 36.000 11.91 0.00 0.00 2.69
4285 4727 6.774354 AGACAGCATTGCATTGTTTTTAAG 57.226 33.333 11.91 0.00 0.00 1.85
4288 4730 5.232463 CCTAGACAGCATTGCATTGTTTTT 58.768 37.500 11.91 1.21 0.00 1.94
4289 4731 4.322198 CCCTAGACAGCATTGCATTGTTTT 60.322 41.667 11.91 3.42 0.00 2.43
4290 4732 3.194116 CCCTAGACAGCATTGCATTGTTT 59.806 43.478 11.91 5.45 0.00 2.83
4291 4733 2.756760 CCCTAGACAGCATTGCATTGTT 59.243 45.455 11.91 1.32 0.00 2.83
4292 4734 2.372264 CCCTAGACAGCATTGCATTGT 58.628 47.619 11.91 7.34 0.00 2.71
4293 4735 1.066605 GCCCTAGACAGCATTGCATTG 59.933 52.381 11.91 4.20 0.00 2.82
4294 4736 1.341285 TGCCCTAGACAGCATTGCATT 60.341 47.619 11.91 0.00 33.08 3.56
4295 4737 0.256752 TGCCCTAGACAGCATTGCAT 59.743 50.000 11.91 0.00 33.08 3.96
4634 5079 9.216117 TCAGAACCAGTTATAACTTAAAGAAGC 57.784 33.333 15.60 1.19 37.08 3.86
4663 5120 8.012151 TCACAACACACACAAATTTAAACTTG 57.988 30.769 7.80 7.80 0.00 3.16
5070 5558 8.937884 CATGGAATAAATGCAATGAAGTCAAAA 58.062 29.630 0.00 0.00 30.96 2.44
5185 5673 6.665992 TGGGAGAATAAATATAGCACGAGT 57.334 37.500 0.00 0.00 0.00 4.18
5423 5912 2.749865 CGGGCGCACTACATTGTGG 61.750 63.158 8.62 0.00 38.31 4.17
5441 5930 1.227002 CTTAGACCTCGGGAAGCGC 60.227 63.158 0.00 0.00 0.00 5.92
5456 5945 9.680315 CGTTGGTTAAATTTATGGTCAAACTTA 57.320 29.630 0.00 0.00 0.00 2.24
5457 5946 8.414778 TCGTTGGTTAAATTTATGGTCAAACTT 58.585 29.630 0.00 0.00 0.00 2.66
5458 5947 7.942990 TCGTTGGTTAAATTTATGGTCAAACT 58.057 30.769 0.00 0.00 0.00 2.66
5459 5948 8.077386 TCTCGTTGGTTAAATTTATGGTCAAAC 58.923 33.333 0.00 0.00 0.00 2.93
5460 5949 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
5461 5950 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
5462 5951 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
5463 5952 6.549061 GGTCTCGTTGGTTAAATTTATGGTC 58.451 40.000 0.00 0.00 0.00 4.02
5464 5953 5.122711 CGGTCTCGTTGGTTAAATTTATGGT 59.877 40.000 0.00 0.00 0.00 3.55
5465 5954 5.352016 TCGGTCTCGTTGGTTAAATTTATGG 59.648 40.000 0.00 0.00 37.69 2.74
5466 5955 6.091713 AGTCGGTCTCGTTGGTTAAATTTATG 59.908 38.462 0.00 0.00 37.69 1.90
5467 5956 6.091713 CAGTCGGTCTCGTTGGTTAAATTTAT 59.908 38.462 0.00 0.00 37.69 1.40
5468 5957 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
5469 5958 4.212636 CAGTCGGTCTCGTTGGTTAAATTT 59.787 41.667 0.00 0.00 37.69 1.82
5470 5959 3.744426 CAGTCGGTCTCGTTGGTTAAATT 59.256 43.478 0.00 0.00 37.69 1.82
5471 5960 3.323243 CAGTCGGTCTCGTTGGTTAAAT 58.677 45.455 0.00 0.00 37.69 1.40
5472 5961 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
5473 5962 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
5474 5963 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
5475 5964 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
5476 5965 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
5477 5966 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
5489 5978 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
5490 5979 2.872337 GATTTTTGCTCCCGCCGCAG 62.872 60.000 0.00 0.00 38.80 5.18
5491 5980 2.988684 ATTTTTGCTCCCGCCGCA 60.989 55.556 0.00 0.00 35.22 5.69
5492 5981 2.202610 GATTTTTGCTCCCGCCGC 60.203 61.111 0.00 0.00 34.43 6.53
5493 5982 1.021202 TATGATTTTTGCTCCCGCCG 58.979 50.000 0.00 0.00 34.43 6.46
5494 5983 1.067060 GGTATGATTTTTGCTCCCGCC 59.933 52.381 0.00 0.00 34.43 6.13
5495 5984 1.748493 TGGTATGATTTTTGCTCCCGC 59.252 47.619 0.00 0.00 0.00 6.13
5496 5985 3.016736 AGTGGTATGATTTTTGCTCCCG 58.983 45.455 0.00 0.00 0.00 5.14
5497 5986 4.016444 TCAGTGGTATGATTTTTGCTCCC 58.984 43.478 0.00 0.00 0.00 4.30
5498 5987 5.643379 TTCAGTGGTATGATTTTTGCTCC 57.357 39.130 0.00 0.00 0.00 4.70
5499 5988 6.470235 CGAATTCAGTGGTATGATTTTTGCTC 59.530 38.462 6.22 0.00 0.00 4.26
5500 5989 6.071952 ACGAATTCAGTGGTATGATTTTTGCT 60.072 34.615 6.22 0.00 0.00 3.91
5501 5990 6.092748 ACGAATTCAGTGGTATGATTTTTGC 58.907 36.000 6.22 0.00 0.00 3.68
5502 5991 9.787532 AATACGAATTCAGTGGTATGATTTTTG 57.212 29.630 6.22 0.00 0.00 2.44
5506 5995 9.787532 CAAAAATACGAATTCAGTGGTATGATT 57.212 29.630 6.22 2.59 0.00 2.57
5507 5996 7.915397 GCAAAAATACGAATTCAGTGGTATGAT 59.085 33.333 6.22 0.00 0.00 2.45
5508 5997 7.120579 AGCAAAAATACGAATTCAGTGGTATGA 59.879 33.333 6.22 0.00 0.00 2.15
5509 5998 7.250569 AGCAAAAATACGAATTCAGTGGTATG 58.749 34.615 6.22 0.00 0.00 2.39
5510 5999 7.391148 AGCAAAAATACGAATTCAGTGGTAT 57.609 32.000 6.22 2.38 0.00 2.73
5517 6006 4.764823 AGTGGGAGCAAAAATACGAATTCA 59.235 37.500 6.22 0.00 0.00 2.57
5536 6025 0.532862 AACGAGACCAACTGCAGTGG 60.533 55.000 22.49 24.01 0.00 4.00
5538 6027 0.532862 CCAACGAGACCAACTGCAGT 60.533 55.000 15.25 15.25 0.00 4.40
5552 6041 8.582433 AAGTTTGACCATAAATTTAACCAACG 57.418 30.769 1.21 0.00 0.00 4.10
5611 6100 7.054124 TGACAAACATAATACTCCCTCCATTC 58.946 38.462 0.00 0.00 0.00 2.67
5620 6109 7.764443 TGGCTAGTTCTGACAAACATAATACTC 59.236 37.037 0.00 0.00 0.00 2.59
5920 6410 5.320549 AGATTACTGAAGGCAGCAATTTG 57.679 39.130 0.00 0.00 46.26 2.32
5931 6421 8.997323 AGAACATTGTCTTCAAGATTACTGAAG 58.003 33.333 6.28 6.28 40.07 3.02
5953 6443 8.657729 GTTTCTTGTAGCTACCAAGATAAGAAC 58.342 37.037 25.75 22.85 35.26 3.01
5974 6464 3.176924 TCTCTCTGCTACAGGGTTTCT 57.823 47.619 0.00 0.00 33.01 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.